RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy430
(107 letters)
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 165 bits (421), Expect = 1e-51
Identities = 55/80 (68%), Positives = 69/80 (86%), Gaps = 1/80 (1%)
Query: 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP-ERKYSVWIGGSILASLSTFQQM 87
+V++GGTT++PG +R++KE+ LAPS +K+KIIAPP ERKYS WIGGSILASL TFQQM
Sbjct: 288 IVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQM 347
Query: 88 WISKQEYDESGPSIVHRKCF 107
W+SKQEY+E G S+V RKCF
Sbjct: 348 WVSKQEYEEHGSSVVERKCF 367
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 163 bits (413), Expect = 1e-50
Identities = 75/80 (93%), Positives = 79/80 (98%)
Query: 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 87
+VVLSGGTTM+PGIADRM KE+TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 297 NVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356
Query: 88 WISKQEYDESGPSIVHRKCF 107
WISK+EYDESGPSIVHRKCF
Sbjct: 357 WISKEEYDESGPSIVHRKCF 376
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 154 bits (391), Expect = 3e-47
Identities = 63/79 (79%), Positives = 74/79 (93%)
Query: 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW 88
+VLSGGTTMY G+ +R+ KE+T LAPSTMKIK++APPERKYSVWIGGSIL+SL TFQQMW
Sbjct: 300 IVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMW 359
Query: 89 ISKQEYDESGPSIVHRKCF 107
++K+EYDESGPSIVHRKCF
Sbjct: 360 VTKEEYDESGPSIVHRKCF 378
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 150 bits (382), Expect = 7e-46
Identities = 53/81 (65%), Positives = 69/81 (85%)
Query: 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 86
++VLSGG+T+ PG +R++KE+ LAP +K+K+IAPPERKYSVW+GGSILASLSTF+
Sbjct: 293 ENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFED 352
Query: 87 MWISKQEYDESGPSIVHRKCF 107
MWI+K+EY+ESG IV RKCF
Sbjct: 353 MWITKKEYEESGSQIVERKCF 373
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 129 bits (326), Expect = 4e-37
Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 86
++VL+GGT+ PG A+R+QKE+T+LAPS K+ +I PP+ W+G SILASL TFQQ
Sbjct: 364 SNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQ 423
Query: 87 MWISKQEYDESGPSIVHRKCF 107
+WI+K+EY+E GP I+ K F
Sbjct: 424 LWITKEEYEEHGPDILQEKRF 444
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 121 bits (305), Expect = 1e-34
Identities = 53/99 (53%), Positives = 70/99 (70%)
Query: 9 IEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 68
+ YS + ++VLSGGTT++PGIA+R+ E+T L PS +KI++ APP+R+
Sbjct: 277 LAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRR 336
Query: 69 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 107
+S WIGGSI +LST Q WI +QEYDE GPSIVHRKCF
Sbjct: 337 FSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 121 bits (305), Expect = 1e-34
Identities = 49/79 (62%), Positives = 62/79 (78%)
Query: 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW 88
+VLSGGTTM+ G DR+ EI AP + I+I APPERK+S +IGGSILASL+TF+++W
Sbjct: 302 IVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIW 361
Query: 89 ISKQEYDESGPSIVHRKCF 107
ISKQE+DE G I+HRK F
Sbjct: 362 ISKQEFDEYGSVILHRKTF 380
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 82.1 bits (203), Expect = 7e-20
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
Query: 23 KHFPHDVVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPE 66
+ ++VLSGG+TM+ G R+Q+++ L P + + +++ P
Sbjct: 310 RPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPR 369
Query: 67 RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 104
++Y+VW GGS+LAS F+++ +K EYDE GPSI
Sbjct: 370 QRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRY 407
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 32.6 bits (75), Expect = 0.025
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 17 ARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 76
A A V+L GG++ P + + +++ K + + +V +G +
Sbjct: 314 ADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF--------GKKPLRSIDPDEAVALGAA 365
Query: 77 ILA 79
I A
Sbjct: 366 IYA 368
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 29.4 bits (67), Expect = 0.23
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 24 HFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 66
D+ L GGT PG + +K+ + + P
Sbjct: 220 QDVEDIYLVGGTCCLPGFEEVFEKQT--------GLPVHKPQH 254
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 28.6 bits (65), Expect = 0.53
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 37 MYPGIADR-MQKEITALAPSTMKIKIIAPPERKYSVWIGGS 76
+ P A M+KE+ AL+ K + PER + +GG+
Sbjct: 163 LPPSAAGFLMEKELEALS------KALENPERPFVAILGGA 197
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 27.7 bits (61), Expect = 1.1
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 27 HDVVLSGGTTMYPGIADRMQKEITALAPS-----------TMKIKIIAPPERKYSVWIG 74
H V S G P ++D+ QK TA + T+ +++ Y++WIG
Sbjct: 214 HAVTYSAGIVQPPRMSDQNQKIETAFLMARRARSLSAERYTLFFDLVSSGNTLYAIWIG 272
>gnl|CDD|222317 pfam13684, Dak1_2, Dihydroxyacetone kinase family. This is the
kinase domain of the dihydroxyacetone kinase family.
Length = 309
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 28 DVVLSGGTTMYPGIAD 43
DVV+ GG TM P D
Sbjct: 114 DVVIEGGQTMNPSTED 129
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 27.3 bits (62), Expect = 1.4
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 14 SHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 73
+H + K G M+KE+ AL K + PER + +
Sbjct: 149 AHASTVGIAKFLKP---------AAAGFL--MEKELEALG------KALENPERPFVAIL 191
Query: 74 GGS 76
GG+
Sbjct: 192 GGA 194
>gnl|CDD|132329 TIGR03286, methan_mark_15, putative methanogenesis marker protein
15. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Related proteins include the BadF/BadG/BcrA/BcrD ATPase
family (pfam01869), which includes an activator for
(R)-2-hydroxyglutaryl-CoA dehydratase [Energy
metabolism, Methanogenesis].
Length = 404
Score = 27.1 bits (60), Expect = 2.0
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80
V+L GGT++ G+ + + I+++ P +Y +G ++LAS
Sbjct: 359 VILVGGTSLIEGLVKALGD--------LLGIEVVVPEYSQYIGAVGAALLAS 402
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 26.5 bits (59), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 19 AKFTKHFPHDVVLSGGTTMYPGI 41
AK K HD+VL GG+T P +
Sbjct: 319 AKLDKSQIHDIVLVGGSTRIPKV 341
>gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional.
Length = 254
Score = 25.8 bits (57), Expect = 4.1
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 48 EITALAPSTMKIKIIAPP--ERKYSVWIGGS 76
+ AP + I PP ERK+ + S
Sbjct: 208 GWSQSAPLAELVGIRVPPQTERKHIILDNDS 238
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 26.0 bits (57), Expect = 4.7
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 37 MYPGIADRMQKEITALAPSTMKIKIIAPPERKY 69
+ PG A+R++ ++ L T K K+ PP R +
Sbjct: 953 VMPGHAERLKLKMHKLVKPTTKKKL--PPYRVH 983
>gnl|CDD|237359 PRK13352, PRK13352, thiamine biosynthesis protein ThiC;
Provisional.
Length = 431
Score = 25.9 bits (58), Expect = 4.9
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 27 HDVVLSGGTTMYPG-IAD 43
+DV LS G + PG IAD
Sbjct: 218 YDVTLSLGDGLRPGCIAD 235
>gnl|CDD|227283 COG4947, COG4947, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 227
Score = 25.6 bits (56), Expect = 4.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 3 EVTTSLIEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIAD 43
+ T +I SG + AR F ++ DV + + PG+AD
Sbjct: 124 HLFTKVIALSGVYDARDFFGGYYDDDVYYNSPSDYLPGLAD 164
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 25.6 bits (56), Expect = 5.3
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 1 MSEVTTSLIEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEI 49
M+E+ IE G D+ L GG M PG+ + +K++
Sbjct: 214 MAEIVARHIEGQGIT------------DLWLVGGACMQPGVEELFEKQL 250
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 25.7 bits (57), Expect = 5.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 19 AKFTKHFPHDVVLSGGTTMYPGI 41
A K ++VL GG+T P +
Sbjct: 320 ADLKKSDIDEIVLVGGSTRIPKV 342
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 25.5 bits (56), Expect = 6.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 19 AKFTKHFPHDVVLSGGTTMYPGI 41
A K H+VVL GG+T P +
Sbjct: 326 AGMDKRSVHEVVLVGGSTRIPKV 348
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 25.5 bits (56), Expect = 6.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 28 DVVLSGGTTMYPGIADRMQKE 48
D+ L GG + G AD +K+
Sbjct: 197 DLYLVGGACSFSGFADVFEKQ 217
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 25.5 bits (57), Expect = 6.4
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 29 VVLSGGTTMYPGIADRMQKEI 49
+VL+GG + G+ + + +E
Sbjct: 274 IVLTGGGALLRGLDELISEET 294
>gnl|CDD|239523 cd03431, DNA_Glycosylase_C, DNA glycosylase (MutY in bacteria and
hMYH in humans) is responsible for repairing misread
A*oxoG residues to C*G by removing the inappropriately
paired adenine base from the DNA backbone. It belongs to
the Nudix hydrolase superfamily and is important for the
repair of various genotoxic lesions. Enzymes belonging
to this superfamily requires a divalent cation, such as
Mg2+ or Mn2+ for their activity. They are also
recognized by a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V). However, DNA
glycosylase does not seem to contain this signature
motif. DNA glycosylase consists of 2 domains: the
N-terminal domain contains the catalytic properties of
the enzyme and the C-terminal domain affects substrate
(oxoG) binding and enzymatic turnover. The C-terminal
domain is highly similar to MutT, based on secondary
structure and topology, despite low sequence identity.
MutT sanitizes the nucleotide precursor pool by
hydrolyzing oxo-dGTP to oxo-dGMO and inorganic
pyrophosphate. The similarity strongly suggests that the
two proteins share a common evolutionary origin.
Length = 118
Score = 25.0 bits (55), Expect = 7.0
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 69 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 107
V++ L+ + W+ +E DE V RK
Sbjct: 77 LHVYLARLEGDLLAPDEGRWVPLEELDEYALPTVMRKIL 115
>gnl|CDD|224537 COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit
2 [Energy production and conversion].
Length = 247
Score = 25.4 bits (56), Expect = 7.0
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 55 STMKIKIIAPPERKYSVWIGGSILASLSTFQQM 87
S M+ K+I + + W+ A+ S + +
Sbjct: 202 SFMRFKVIVVSQEDFDAWVAEVKAAAASAYLAL 234
>gnl|CDD|216012 pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porphyrin)
Methylases. This family uses S-AdoMet in the
methylation of diverse substrates. This family includes
a related group of bacterial proteins of unknown
function. This family includes the methylase Dipthine
synthase.
Length = 202
Score = 25.0 bits (55), Expect = 8.6
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 62
VVL G P + + AL + +++++I
Sbjct: 77 VVLVSG---DPLVYGTGSYLVEALEAAGIEVEVI 107
>gnl|CDD|217205 pfam02730, AFOR_N, Aldehyde ferredoxin oxidoreductase, N-terminal
domain. Aldehyde ferredoxin oxidoreductase (AOR)
catalyzes the reversible oxidation of aldehydes to
their corresponding carboxylic acids with their
accompanying reduction of the redox protein ferredoxin.
This domain interacts with the tungsten cofactor.
Length = 201
Score = 25.1 bits (56), Expect = 8.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 55 STMKIKIIAPPERKYSVWIGGSILAS 80
ST +K+ PE ++GG L +
Sbjct: 10 STGTVKVEELPEELARKYLGGRGLGA 35
>gnl|CDD|216813 pfam01964, ThiC, ThiC family. ThiC is found within the thiamine
biosynthesis operon. ThiC is involved in pyrimidine
biosynthesis. The precise catalytic function of ThiC is
still not known. ThiC participates in the formation of
4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an
intermediate in the de novo pyrimidine biosynthesis.
Length = 421
Score = 25.1 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 27 HDVVLSGGTTMYPG-IAD 43
+DV LS G + PG IAD
Sbjct: 214 YDVTLSLGDGLRPGCIAD 231
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.392
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,357,801
Number of extensions: 447505
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 37
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)