RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy430
(107 letters)
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 192 bits (489), Expect = 5e-62
Identities = 75/79 (94%), Positives = 78/79 (98%)
Query: 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW 88
V+SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW
Sbjct: 297 NVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW 356
Query: 89 ISKQEYDESGPSIVHRKCF 107
I+KQEYDE+GPSIVHRKCF
Sbjct: 357 ITKQEYDEAGPSIVHRKCF 375
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 170 bits (432), Expect = 1e-52
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 23 KHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 79
H+VVL+GGT+ PG++DR+ E+ + PS +K +I+ ER+Y W+GGSIL
Sbjct: 411 ATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-LKFRILTTGHTIERQYQSWLGGSILT 469
Query: 80 SLSTFQQMWISKQEYDESGPSIVHRKCF 107
SL TF Q+W+ K+EY+E G + F
Sbjct: 470 SLGTFHQLWVGKKEYEEVGVERLLNDRF 497
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 166 bits (421), Expect = 2e-51
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 29 VVLSGGTTMYPGIADRMQKEIT----------------ALAPSTMKIKIIAPPERKYSVW 72
+VLSGG+TM+ R+Q+++ L P + +++I ++Y+VW
Sbjct: 319 IVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVW 378
Query: 73 IGGSILASLSTFQQMWISKQEYDESGPSIVHRK-CF 107
GGS+LAS F Q+ +K++Y+E GPSI F
Sbjct: 379 FGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 164 bits (417), Expect = 6e-51
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 29 VVLSGGTTMYPGIADRMQKEITALAPSTM--------------KIKIIAPPERKYSVWIG 74
+VLSGG+T++ +R+Q+++ + + + +I+ ++ +VW G
Sbjct: 330 IVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFG 389
Query: 75 GSILASLSTFQQMWISKQEYDESGPSIVHRKC 106
GS+LA F +K +Y+E G SI R
Sbjct: 390 GSLLAQTPEFGSYCHTKADYEEYGASIARRYQ 421
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 163 bits (414), Expect = 1e-50
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 12/90 (13%)
Query: 29 VVLSGGTTMYPGIADRMQKEITAL-----------APSTMKIKIIAPPERKYSVWIGGSI 77
+VLSGG+TMYPG+ R+++E+ L S KI+I PP RK+ V++GG++
Sbjct: 301 IVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAV 360
Query: 78 LASLST-FQQMWISKQEYDESGPSIVHRKC 106
LA + W+++QEY E G ++ +
Sbjct: 361 LADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 30.6 bits (69), Expect = 0.066
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79
+VV+ GG GI M +E + +II P + + +G ++ A
Sbjct: 209 NVVMVGGVARNSGIVRAMARE--------INTEIIVPDIPQLTGALGAALYA 252
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar
eltor}
Length = 390
Score = 30.0 bits (68), Expect = 0.12
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 43 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 85
+ + + A+ TM+ + ER Y + IG + A+ +
Sbjct: 16 ENLYFQSNAMECKTMERITVNLGERSYPISIGAGLFANPALLS 58
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 29.1 bits (65), Expect = 0.20
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79
DVV++GG G+ +++ + ++I P +Y+ +G ++ A
Sbjct: 211 DVVMTGGVAQNYGVRGALEEG--------LGVEIKTSPLAQYNGALGAALYA 254
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 28.0 bits (63), Expect = 0.51
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 57 MKIKIIAPPERKYSVWIGGSILASLSTF 84
MK++ P Y +++ + + T+
Sbjct: 1 MKLQT-TYPSNNYPIYVEHGAIKYIGTY 27
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase;
HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB:
2d2x_A*
Length = 368
Score = 27.7 bits (62), Expect = 0.70
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 57 MKIKIIAPPERKYSVWIGGSILASLSTF 84
M K I +R ++ G +L S+ ++
Sbjct: 1 MTTKQICFADRCFNFAFGEHVLESVESY 28
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 27.3 bits (61), Expect = 0.90
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 19 AKFTKHFPHDVVLSGGTTMYPGIADRMQK 47
AK + V + GGTT P + + +
Sbjct: 328 AKLSAEEVDFVEIIGGTTRIPTLKQSISE 356
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 1 MSEVTTSLIEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKE 48
E+ SL + R + + P L GG + G+A +
Sbjct: 288 TQELRRSLEFF------RIQLEEASPEVGYLLGGGSKLRGLASLLTDT 329
>3gf6_A Uncharacterized bacterial lipoprotein; all-beta fold, structural
genomics, joint center for structu genomics, JCSG; HET:
MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
Length = 224
Score = 26.6 bits (58), Expect = 1.5
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 1 MSEVTTSLIEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIK 60
S++T SL G++P+ ++ + DV + R++ E+ M
Sbjct: 80 KSKLTMSLGYKDGNYPSESQVPIYTSQDVTAKYAVKL------RLKGELLVSGDEWMIDY 133
Query: 61 IIA---------PPERKYSVWI--GGSILASLSTFQQMWISKQEYDESGPS 100
+ A PP V++ GG L + +F++ YD S S
Sbjct: 134 VYAQLASLFQPYPPANFPEVFMCKGGMKLGTFDSFRRTCTFDITYDRSDLS 184
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 26.4 bits (59), Expect = 1.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 29 VVLSGGTTMYPGIADRMQKEI 49
V + GGT G ++ + +
Sbjct: 230 VYVVGGTAYLTGFSEEFSRFL 250
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 26.2 bits (58), Expect = 2.5
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 44 RMQKEI--TALAPSTMKIKIIAPPERKYSVWIGG 75
R++ + L +++ P+R S ++GG
Sbjct: 406 RLEMRVLLDVLLDRVDSLELAGEPKRVNSTFVGG 439
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 26.1 bits (58), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 44 RMQKEI--TALAPSTMKIKIIAPPERKYSVWIGG 75
MQ I + +I+++A PER S ++ G
Sbjct: 383 EMQLRILWEEILTRFSRIEVMAEPERVRSNFVRG 416
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 25.7 bits (57), Expect = 3.0
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 44 RMQKEI--TALAPSTMKIKIIAPPERKYSVWIGG 75
+++ +I L P +++ PP + ++GG
Sbjct: 384 KLEMKIFFEELLPKLKSVELSGPPRLVATNFVGG 417
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 25.9 bits (58), Expect = 3.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 19 AKFTKHFPHDVVLSGGTTMYPGI 41
+ K D+VL GG+T P +
Sbjct: 337 SGLEKKDVDDIVLVGGSTRIPKV 359
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 26.0 bits (58), Expect = 3.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 19 AKFTKHFPHDVVLSGGTTMYPGI 41
AK K ++VL GG+T P I
Sbjct: 345 AKLDKGQIQEIVLVGGSTRIPKI 367
>3u4g_A NAMN:DMB phosphoribosyltransferase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
1.90A {Pyrococcus horikoshii}
Length = 337
Score = 25.6 bits (56), Expect = 3.3
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 15 HPARAKFTKHFPHDVVLSGGTTM--YPGIADRMQKEITALAPST 56
+ F DVVL+GGT M + + ++++ +T
Sbjct: 210 IATVLGLSLGFGGDVVLAGGTQMLAVSALLKSLGEDLSRFMIAT 253
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 25.7 bits (56), Expect = 3.7
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 20 KFTKHFPHDVVLSGGT-TMYPGIADRMQKEITALAPSTMKIKII 62
+ V + G +P +RM + L P + +
Sbjct: 387 RRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLR 430
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 25.6 bits (57), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 19 AKFTKHFPHDVVLSGGTTMYPGI 41
AK K HD+VL GG+T P I
Sbjct: 324 AKLDKSQIHDIVLVGGSTRIPKI 346
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 25.2 bits (55), Expect = 4.9
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 13/69 (18%)
Query: 41 IADRMQKEIT-ALAPSTMKIK---IIAPPE--RKYSVWIGGSILAS----LSTFQQMWIS 90
I ++ L I P E + V G+ S +S + M+
Sbjct: 1005 IISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMF-- 1062
Query: 91 KQEYDESGP 99
++ + P
Sbjct: 1063 -KDRFKDEP 1070
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 24.6 bits (54), Expect = 7.9
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 9/54 (16%)
Query: 23 KHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKI-IAPPERKYSVWIGG 75
P VVL+GG P I + LA K + I
Sbjct: 326 IGIPGGVVLTGGGAKIPRINE--------LATEVFKSPVRTGCYANSDRPSIIN 371
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.392
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,618,830
Number of extensions: 85258
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 36
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)