RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy430
         (107 letters)



>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 258

 Score =  132 bits (332), Expect = 2e-40
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 17/102 (16%)

Query: 23  KHFPHDVVLSGGTTMYPGIADRMQKEIT----------------ALAPSTMKIKIIAPPE 66
           +    ++VLSGG+TM+     R+Q+++                  L P  + +++I    
Sbjct: 153 RPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHM 212

Query: 67  RKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV-HRKCF 107
           ++Y+VW GGS+LAS   F Q+  +K++Y+E GPSI  H   F
Sbjct: 213 QRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 254


>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 225

 Score =  127 bits (320), Expect = 6e-39
 Identities = 72/81 (88%), Positives = 76/81 (93%)

Query: 23  KHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 82
           K    + V+SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS
Sbjct: 145 KDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 204

Query: 83  TFQQMWISKQEYDESGPSIVH 103
           TFQQMWI+KQEYDE+GPSIVH
Sbjct: 205 TFQQMWITKQEYDEAGPSIVH 225


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 59.4 bits (143), Expect = 6e-13
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 23  KHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 63
             F   +VLSGG+TMYPG+  R+++E+  L    +    + 
Sbjct: 142 SEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVE 182


>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 193

 Score = 32.3 bits (73), Expect = 0.005
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 17  ARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 76
             AK  K   HD+VL GG+T  P I   +Q        +    K I P E   +V  G +
Sbjct: 134 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELN----KSINPDE---AVAYGAA 186

Query: 77  ILASL 81
           + A++
Sbjct: 187 VQAAI 191


>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus
           denitrificans [TaxId: 266]}
          Length = 145

 Score = 28.5 bits (63), Expect = 0.095
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 35  TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 73
           +    G+      E+  +  + M I + A  + KY  W+
Sbjct: 98  SVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWL 136


>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 198

 Score = 27.2 bits (60), Expect = 0.38
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 16  PARAKFTKHFPHDVVLSGGTTMYPGIADRMQKE 48
              A  +     DV+L GG T  P +  ++ + 
Sbjct: 139 LQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 171


>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK
           {Escherichia coli [TaxId: 562]}
          Length = 170

 Score = 26.7 bits (58), Expect = 0.46
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 26  PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79
              VV+ G   +  G    ++  + A  P+   + ++A   R  +  +G ++LA
Sbjct: 115 CQCVVVGGSVGLAEGYLALVETYL-AQEPAAFHVDLLAAHYRHDAGLLGAALLA 167


>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 152

 Score = 26.6 bits (58), Expect = 0.53
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 39  PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 73
            GI      E+  ++ + M I +    E  Y+ W+
Sbjct: 116 EGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWL 150


>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase
           flavoprotein, N-terminal domain {Oligotropha
           carboxidovorans, formerly Pseudomonas carboxydovorans
           [TaxId: 40137]}
          Length = 177

 Score = 26.0 bits (56), Expect = 0.90
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 3/94 (3%)

Query: 17  ARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 76
           A A  TK       L+GG ++ P +  R+      +    +   +    E    V    +
Sbjct: 17  AVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMT 76

Query: 77  ILASL---STFQQMWISKQEYDESGPSIVHRKCF 107
              +L             +E          R   
Sbjct: 77  TQHALIGSDFLAAKLPIIRETSLLIADPQIRYMG 110


>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 137

 Score = 25.4 bits (55), Expect = 1.1
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 39  PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 73
           PG+      EI     S M I +   P + +  W 
Sbjct: 99  PGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWS 133


>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
           {Thermotoga maritima [TaxId: 2336]}
          Length = 196

 Score = 25.3 bits (54), Expect = 1.7
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 26  PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIG-GSILASLSTF 84
              + L+GG ++  G+   +QKE        + +     P    +V  G G +L  ++  
Sbjct: 138 ERGIFLTGGGSLLRGLDTLLQKET------GISVIRSEEPL--TAVAKGAGMVLDKVNIL 189

Query: 85  QQM 87
           +++
Sbjct: 190 KKL 192


>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
           mansoni) [TaxId: 6183]}
          Length = 237

 Score = 24.0 bits (52), Expect = 4.0
 Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 17  ARAKFTKHFPHDVVLSGGT-TMYPGIADRMQKEITALAPSTMKIKII 62
              +        V + G     +P   +RM   +  L P   +  + 
Sbjct: 174 CILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLR 220


>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
           flavoprotein ETFP {Paracoccus denitrificans [TaxId:
           266]}
          Length = 246

 Score = 23.4 bits (50), Expect = 6.3
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 9/45 (20%)

Query: 39  PGIADRMQKEITAL---------APSTMKIKIIAPPERKYSVWIG 74
           P I    +K +            AP    + +  P  RK  + +G
Sbjct: 193 PNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVG 237


>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 243

 Score = 23.3 bits (50), Expect = 7.2
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 24  HFPHDVVLSGGT-TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 82
                V + G    ++P   +R    +  L PS  +I  I   E +     G +++++++
Sbjct: 183 VMRITVGVDGSVYKLHPSFKERFHASVRRLTPSC-EITFI---ESEEGSGRGAALVSAVA 238


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,130
Number of extensions: 16025
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 17
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)