BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4300
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 22/288 (7%)
Query: 8 FLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCI 67
+LVE L A T R + E + L AL + + ++GD ++ +++ C+
Sbjct: 48 YLVELLGANLSRPTQRSRAIS---PETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCV 104
Query: 68 DSFLTAMSQPQIQCQYIKWPTEEESV-IIERNFRALAKFPGVIGAIDGCHIEGKFSKDIR 126
+ A+ + Q+I++P +E S+ ++ F LA PGV+G +D H+ K
Sbjct: 105 ANVTEALVERA--SQFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAED 162
Query: 127 NDYNNRKCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRIDAYGPTSLLY 186
Y NRK S+ VC L + G D VL S + + +A ++
Sbjct: 163 LSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAG-----MH 217
Query: 187 RDEYHLLGDSAYPLRTWCMVPYKNFGHMTE--EEKKYNTALSKTRVPIENVFGLIKGRWR 244
+D + LLGDS++ LRTW M P H+ E E +YN A S T IE F + R+R
Sbjct: 218 KDSW-LLGDSSFFLRTWLMTPL----HIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFR 272
Query: 245 RL---KYIDVGDPKRMAYIISAACVLHNFCYLQD-DVVEEIITHPIEN 288
L K P++ ++II A CVLHN DV +T P+E
Sbjct: 273 CLDGSKGALQYSPEKSSHIILACCVLHNISLEHGMDVWSSPMTGPMEQ 320
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 132/292 (45%), Gaps = 30/292 (10%)
Query: 8 FLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCI 67
+LVE L A T R + E + L AL + + ++GD ++ +++ C+
Sbjct: 48 YLVELLGASLSRPTQRSRAIS---PETQILAALGFYTSGSFQTRMGDAIGISQASMSRCV 104
Query: 68 DSFLTAMSQPQIQCQYIKWPTEEESV-IIERNFRALAKFPGVIGAIDGCHIEGKFSKDIR 126
+ A+ + Q+I +P +E SV ++ F LA PGVIG +D H+ K
Sbjct: 105 ANVTEALVERA--SQFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAED 162
Query: 127 NDYNNRKCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRIDAYGPTSLLY 186
Y NRK S+ VC L + G D VL S + + +A ++
Sbjct: 163 LSYVNRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFEAG-----MH 217
Query: 187 RDEYHLLGDSAYPLRTWCMVPYKNFGHMTE--EEKKYNTALSKTRVPIENVFGLIKGRWR 244
++ + LLGDS++ LRTW M P H+ E E +YN A S T IE F + R+R
Sbjct: 218 KESW-LLGDSSFFLRTWLMTPL----HIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFR 272
Query: 245 -------RLKYIDVGDPKRMAYIISAACVLHNFCYLQD-DVVEEIITHPIEN 288
L+Y P++ ++II A CVLHN DV +T P+E
Sbjct: 273 CLDGSKGALQY----SPEKSSHIILACCVLHNISLEHGMDVWSSPVTGPVEQ 320
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 129/292 (44%), Gaps = 30/292 (10%)
Query: 8 FLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCI 67
+LVE L A T R + E + L AL + + ++GD ++ +++ C+
Sbjct: 48 YLVELLGASLSRPTQRSRAIS---PETQILAALGFYTSGSFQTRMGDAIGISQASMSRCV 104
Query: 68 DSFLTAMSQPQIQCQYIKWPTEEESV-IIERNFRALAKFPGVIGAIDGCHIEGKFSKDIR 126
+ A+ + Q+I +P +E ++ ++ F LA PGVIGA+D H+ K
Sbjct: 105 ANVTEALVERA--SQFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAED 162
Query: 127 NDYNNRKCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRIDAYGPTSLLY 186
Y NRK S+ VC L + G D VL S + + + P
Sbjct: 163 LSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMP----- 217
Query: 187 RDEYHLLGDSAYPLRTWCMVPYKNFGHMTE--EEKKYNTALSKTRVPIENVFGLIKGRWR 244
+D + LLGDS++ L TW + P H+ E E +YN A S T IE + R+R
Sbjct: 218 KDSW-LLGDSSFFLHTWLLTPL----HIPETPAEYRYNRAHSATHSVIEKTLRTLCCRFR 272
Query: 245 -------RLKYIDVGDPKRMAYIISAACVLHNFCYLQD-DVVEEIITHPIEN 288
L+Y P++ ++II A CVLHN DV +T PIE
Sbjct: 273 CLDGSKGALQY----SPEKSSHIILACCVLHNISLEHGMDVWSSPVTGPIEQ 320
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 119/271 (43%), Gaps = 25/271 (9%)
Query: 8 FLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCI 67
FLVE L A T R + E + L AL + + ++GD ++ +++ C+
Sbjct: 48 FLVELLGASLSRPTQRSRAIS---PETQILAALGFYTSGSFQTRMGDAIGISQASMSRCV 104
Query: 68 DSFLTAMSQPQIQCQYIKWPTEEESV-IIERNFRALAKFPGVIGAIDGCHIEGKFSKDIR 126
+ A+ + Q+I +P +E +V ++ F LA PGVIG D H+ K
Sbjct: 105 ANVTEALVERA--SQFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAED 162
Query: 127 NDYNNRKCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRIDAYGPTSLLY 186
Y NRK S+ VC L + G D VL S + + + P
Sbjct: 163 LSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMP----- 217
Query: 187 RDEYHLLGDSAYPLRTWCMVPYKNFGHMTEEEKKYNTALSKTRVPIENVFGLIKGRWR-- 244
+D + LLGDS++ LR+W + P T E +YN A S T IE + R+R
Sbjct: 218 KDSW-LLGDSSFFLRSWLLTPLPI--PETAAEYRYNRAHSATHSVIERTLQTLCCRFRCL 274
Query: 245 -----RLKYIDVGDPKRMAYIISAACVLHNF 270
L+Y P++ ++II A CVLHN
Sbjct: 275 DGSKGALQY----SPEKCSHIILACCVLHNI 301
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 27/278 (9%)
Query: 5 TFGF-------LVEALAAINGYETLYERGV-PFVPVEKKTLVALSYMATQLSMRKIGDQF 56
TFGF LVE L T R + P V + L AL + + K+GD
Sbjct: 38 TFGFPREFIYYLVELLKDSLLRRTQRSRAISPDVQI----LAALGFYTSGSFQSKMGDAI 93
Query: 57 NLADSTVWSCIDSFLTAMSQPQIQCQYIKWPTEEES-VIIERNFRALAKFPGVIGAIDGC 115
++ +++ C+ + A+ + + +I + +E + + F +A P V G +D
Sbjct: 94 GISQASMSRCVSNVTKALIEKAPE--FIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCA 151
Query: 116 HIEGKFSKDIRNDYNNRKCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRR 175
HI K + Y N+K S+ Q VC + LL + G D V S + +
Sbjct: 152 HIAIKAPNADDSSYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVAKL 211
Query: 176 IDAYGPTSLLYRDEYHLLGDSAYPLRTWCMVPYKNFGHMTEEEKKYNTALSKTRVPIENV 235
+ DE LLGD+ YPL+ W M P ++ + + +YN A + T ++
Sbjct: 212 FEEQEND-----DEGWLLGDNRYPLKKWLMTPVQS--PESPADYRYNLAHTTTHEIVDRT 264
Query: 236 FGLIKGRWRRLK----YIDVGDPKRMAYIISAACVLHN 269
F I+ R+R L Y+ P++ ++II A CVLHN
Sbjct: 265 FRAIQTRFRCLDGAKGYLQYS-PEKCSHIIQACCVLHN 301
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 41/297 (13%)
Query: 4 TTFGF-------LVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQF 56
TT+GF LV+ L A T R + E + + AL + + ++GD
Sbjct: 37 TTYGFPRPFIDYLVDLLGASLSRPTHRSRAIS---PETQIMAALGFYTSGSFQTRMGDTI 93
Query: 57 NLADSTVWSCIDSFLTAMSQPQIQCQYIKWPTEEESVI-IERNFRALAKFPGVIGAIDGC 115
++ +++ C+ + A+ + Q+I +P +E SV ++ F LA PGV+G +D
Sbjct: 94 GISQASMSRCVTNVTEALVERA--SQFISFPRDERSVQGLKDEFYNLAGVPGVLGVVDCT 151
Query: 116 HIEGKFSKDIRNDYNNRKCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRR 175
+ K Y N + S+ VC + L G D VL S++
Sbjct: 152 QVNIKAPNSEDLSYVNSRGLHSLNCLLVCDARGSLLWAETSRLGSMQDNAVLHQSEL--- 208
Query: 176 IDAYGPTSLLYRDEYH----LLGDSAYPLRTWCMVPYKNFGHMTEEEKKYNTALSKTRVP 231
S L+ + H LL D+A+ LR W M P + + + +YN A + T
Sbjct: 209 -------SGLFETKMHKQGWLLADNAFILRPWLMTPVQI--PESPSDYRYNMAHTATHSV 259
Query: 232 IENV-------FGLIKGRWRRLKYIDVGDPKRMAYIISAACVLHNFCYLQD-DVVEE 280
+E F + G L+Y P++ A I+ A C+LHN D D+V E
Sbjct: 260 MERTQRSLRLRFRCLDGSRATLQY----SPEKSAQIVLACCILHNIALQHDLDIVSE 312
>sp|A6WC59|Y2934_KINRD UPF0042 nucleotide-binding protein Krad_2934 OS=Kineococcus
radiotolerans (strain ATCC BAA-149 / DSM 14245 /
SRS30216) GN=Krad_2934 PE=3 SV=1
Length = 304
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 133 KCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRIDAYG-PTSLLYRD 188
+ + S + G NK + GCTG H + ++ ++GRR+ G P +L+RD
Sbjct: 245 ESSLSPVFDGYRRENKRYATVAFGCTGGKHRSVAMA-EELGRRLRRDGVPVRVLHRD 300
>sp|Q9T0R9|CAPSD_BPMX1 Capsid protein OS=Enterobacteria phage MX1 PE=3 SV=1
Length = 133
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 17 NGYETLYERGVPFVP-VEKKTLVALSYMATQLSMRKIGDQF-NLADSTVWSCIDSFLTAM 74
NG L E G VP +EK+ +++S + K+ + N T D +T
Sbjct: 31 NGVAALSEAGA--VPALEKRVTISVSQPSRNRKNYKVQVKIQNPTSCTASGTCDPSVTRS 88
Query: 75 SQPQIQCQYIKWPTEEESVIIERNFRALAKFPGVIGAIDGCH 116
+ + + ++ T+EE ++ +AL P +I AID +
Sbjct: 89 AYADVTFSFTQYSTDEERALVRTELKALLADPMLIDAIDNLN 130
>sp|Q8G6D8|Y705_BIFLO UPF0042 nucleotide-binding protein BL0705 OS=Bifidobacterium longum
(strain NCC 2705) GN=BL0705 PE=3 SV=3
Length = 328
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 138 MILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRIDAYGPTSLLYRDEYH 191
+ L+G +K I VGCTG H + +S ++ RR+ A+G + E H
Sbjct: 271 IALEGYAQEDKHYVTIAVGCTGGQHRSVAMS-EELARRLRAHGLNVTVSAREQH 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,210,979
Number of Sequences: 539616
Number of extensions: 4516089
Number of successful extensions: 9508
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9483
Number of HSP's gapped (non-prelim): 12
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)