Query psy4300
Match_columns 307
No_of_seqs 159 out of 1507
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 22:03:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 97.1 0.0015 5.1E-08 40.7 6.0 42 27-69 3-44 (51)
2 2glo_A Brinker CG9653-PA; prot 96.9 0.0017 5.8E-08 42.7 5.6 43 27-70 3-49 (59)
3 2w7n_A TRFB transcriptional re 96.6 0.0037 1.3E-07 45.8 5.9 59 1-75 5-63 (101)
4 1jhg_A Trp operon repressor; c 96.4 0.0036 1.2E-07 45.8 4.7 48 29-77 35-88 (101)
5 2jn6_A Protein CGL2762, transp 96.4 0.0057 2E-07 44.3 5.7 45 27-71 3-48 (97)
6 2p7v_B Sigma-70, RNA polymeras 96.2 0.015 5.1E-07 39.1 6.6 51 28-78 4-57 (68)
7 2elh_A CG11849-PA, LD40883P; s 95.9 0.018 6.1E-07 40.9 6.0 45 27-72 20-64 (87)
8 1jko_C HIN recombinase, DNA-in 95.9 0.0072 2.5E-07 37.8 3.4 40 29-69 5-44 (52)
9 1ku3_A Sigma factor SIGA; heli 95.8 0.025 8.6E-07 38.5 6.2 50 28-77 9-62 (73)
10 1tty_A Sigma-A, RNA polymerase 95.8 0.023 7.9E-07 40.2 6.2 51 28-78 17-70 (87)
11 2o8x_A Probable RNA polymerase 95.7 0.031 1.1E-06 37.4 6.3 50 28-78 14-63 (70)
12 2jrt_A Uncharacterized protein 95.3 0.047 1.6E-06 39.5 6.3 51 27-77 30-80 (95)
13 3t72_q RNA polymerase sigma fa 95.2 0.079 2.7E-06 38.6 7.5 51 28-78 18-71 (99)
14 3hug_A RNA polymerase sigma fa 95.1 0.051 1.7E-06 38.8 6.1 49 28-77 36-84 (92)
15 1p4w_A RCSB; solution structur 95.0 0.088 3E-06 38.3 7.2 64 5-77 17-80 (99)
16 1u78_A TC3 transposase, transp 95.0 0.034 1.2E-06 42.7 5.2 44 27-71 4-47 (141)
17 1fse_A GERE; helix-turn-helix 94.9 0.072 2.5E-06 35.9 6.3 49 27-77 9-57 (74)
18 1pdn_C Protein (PRD paired); p 94.9 0.052 1.8E-06 40.6 6.1 45 27-72 15-59 (128)
19 2x48_A CAG38821; archeal virus 94.9 0.044 1.5E-06 34.9 4.8 36 32-68 18-53 (55)
20 1k78_A Paired box protein PAX5 94.8 0.056 1.9E-06 42.1 6.1 46 27-73 30-75 (149)
21 2rn7_A IS629 ORFA; helix, all 94.6 0.035 1.2E-06 40.9 4.3 44 27-70 4-54 (108)
22 1je8_A Nitrate/nitrite respons 94.5 0.086 2.9E-06 36.8 5.9 48 28-77 20-67 (82)
23 1hlv_A CENP-B, major centromer 94.4 0.065 2.2E-06 40.7 5.5 47 27-73 5-52 (131)
24 1j1v_A Chromosomal replication 94.2 0.071 2.4E-06 38.5 4.9 70 7-76 4-77 (94)
25 3c57_A Two component transcrip 94.0 0.13 4.5E-06 36.9 6.1 48 28-77 26-73 (95)
26 1s7o_A Hypothetical UPF0122 pr 93.9 0.14 4.7E-06 38.2 6.2 49 29-78 22-70 (113)
27 2jpc_A SSRB; DNA binding prote 93.7 0.093 3.2E-06 34.0 4.5 35 43-77 10-44 (61)
28 1x3u_A Transcriptional regulat 93.5 0.14 4.7E-06 35.0 5.4 46 30-77 17-62 (79)
29 3ulq_B Transcriptional regulat 92.9 0.28 9.7E-06 34.8 6.3 49 27-77 27-75 (90)
30 2k27_A Paired box protein PAX- 92.9 0.14 4.9E-06 40.3 5.2 43 27-70 23-65 (159)
31 3frw_A Putative Trp repressor 92.8 0.13 4.4E-06 37.7 4.4 30 41-70 53-82 (107)
32 1xsv_A Hypothetical UPF0122 pr 92.7 0.23 7.8E-06 37.0 5.8 49 29-78 25-73 (113)
33 3pvv_A Chromosomal replication 92.7 0.17 5.7E-06 37.0 4.9 72 6-77 7-81 (101)
34 2rnj_A Response regulator prot 92.6 0.14 4.8E-06 36.3 4.4 48 28-77 28-75 (91)
35 1iuf_A Centromere ABP1 protein 92.3 0.096 3.3E-06 40.8 3.4 51 26-76 8-66 (144)
36 1zx4_A P1 PARB, plasmid partit 92.2 0.32 1.1E-05 39.8 6.5 42 28-69 6-47 (192)
37 3kor_A Possible Trp repressor; 91.9 0.25 8.5E-06 37.0 5.0 37 32-69 62-98 (119)
38 1rp3_A RNA polymerase sigma fa 91.8 0.3 1E-05 40.6 6.2 49 28-77 186-234 (239)
39 2l1p_A DNA-binding protein SAT 91.4 0.27 9.2E-06 34.1 4.4 35 35-69 21-55 (83)
40 3tgn_A ADC operon repressor AD 91.1 0.89 3E-05 34.5 7.9 45 27-72 33-77 (146)
41 1or7_A Sigma-24, RNA polymeras 91.0 0.33 1.1E-05 39.0 5.5 48 29-77 140-187 (194)
42 2d1h_A ST1889, 109AA long hypo 90.7 0.51 1.7E-05 33.9 5.8 30 44-73 34-63 (109)
43 3hot_A Transposable element ma 90.6 8.4 0.00029 33.7 15.4 149 1-156 41-209 (345)
44 3mzy_A RNA polymerase sigma-H 90.5 0.48 1.6E-05 36.7 5.9 47 29-77 109-155 (164)
45 1uxc_A FRUR (1-57), fructose r 90.4 0.2 6.8E-06 33.3 2.9 22 48-69 2-23 (65)
46 2heo_A Z-DNA binding protein 1 90.3 0.6 2.1E-05 31.0 5.4 40 33-72 12-51 (67)
47 2cob_A LCOR protein; MLR2, KIA 90.2 0.73 2.5E-05 30.9 5.5 46 27-72 10-56 (70)
48 1r1u_A CZRA, repressor protein 90.0 1.2 4E-05 32.3 7.3 30 44-73 37-66 (106)
49 1oyi_A Double-stranded RNA-bin 89.8 0.33 1.1E-05 33.9 3.8 41 30-72 16-56 (82)
50 2qvo_A Uncharacterized protein 89.7 0.5 1.7E-05 33.6 4.9 38 36-73 17-57 (95)
51 1qgp_A Protein (double strande 89.6 0.7 2.4E-05 31.7 5.4 40 33-72 16-57 (77)
52 4dyq_A Gene 1 protein; GP1, oc 89.5 0.31 1.1E-05 37.7 3.9 42 27-69 10-52 (140)
53 1u78_A TC3 transposase, transp 89.3 2.1 7E-05 32.3 8.6 68 1-70 34-103 (141)
54 2l0k_A Stage III sporulation p 89.0 0.5 1.7E-05 33.8 4.4 36 34-69 7-43 (93)
55 3dv8_A Transcriptional regulat 88.9 0.98 3.3E-05 36.8 6.9 65 29-95 145-217 (220)
56 3oop_A LIN2960 protein; protei 88.9 0.87 3E-05 34.6 6.1 47 27-73 32-78 (143)
57 3bja_A Transcriptional regulat 88.7 0.35 1.2E-05 36.5 3.6 46 28-73 29-74 (139)
58 2pij_A Prophage PFL 6 CRO; tra 88.6 0.54 1.8E-05 30.8 4.1 27 41-68 9-35 (67)
59 3mky_B Protein SOPB; partition 88.6 0.78 2.7E-05 37.2 5.7 43 27-69 21-65 (189)
60 2cw1_A SN4M; lambda CRO fold, 88.2 0.56 1.9E-05 31.2 3.9 29 40-68 7-35 (65)
61 1y0u_A Arsenical resistance op 88.2 0.66 2.2E-05 33.0 4.6 30 44-73 41-70 (96)
62 1sfx_A Conserved hypothetical 88.1 1.3 4.3E-05 31.6 6.3 43 30-73 18-61 (109)
63 2oa4_A SIR5; structure, struct 88.1 1.3 4.4E-05 32.1 6.0 51 28-78 32-82 (101)
64 1qbj_A Protein (double-strande 88.1 1.2 4.2E-05 30.8 5.8 40 33-72 12-53 (81)
65 3g3z_A NMB1585, transcriptiona 88.0 1.4 4.9E-05 33.4 6.8 45 28-72 27-71 (145)
66 3deu_A Transcriptional regulat 87.8 0.58 2E-05 36.9 4.6 46 27-72 48-94 (166)
67 2dk5_A DNA-directed RNA polyme 87.7 1.2 3.9E-05 31.7 5.6 46 27-72 15-62 (91)
68 3bpv_A Transcriptional regulat 87.6 0.86 2.9E-05 34.2 5.3 46 28-73 25-70 (138)
69 2x4h_A Hypothetical protein SS 87.5 1.1 3.8E-05 33.9 5.9 41 33-73 15-58 (139)
70 1jgs_A Multiple antibiotic res 87.5 0.98 3.3E-05 33.9 5.5 46 28-73 30-75 (138)
71 1zyb_A Transcription regulator 87.5 1.1 3.9E-05 37.0 6.4 46 27-72 159-212 (232)
72 2jt1_A PEFI protein; solution 87.3 1.4 4.7E-05 30.3 5.6 50 1-72 1-50 (77)
73 2rdp_A Putative transcriptiona 87.3 1.1 3.8E-05 34.2 5.8 46 28-73 38-83 (150)
74 3cuo_A Uncharacterized HTH-typ 87.3 0.63 2.1E-05 32.9 4.1 27 46-72 38-64 (99)
75 3ech_A MEXR, multidrug resista 87.1 1.3 4.4E-05 33.5 6.1 46 28-73 33-78 (142)
76 3r0a_A Putative transcriptiona 87.0 1.3 4.3E-05 33.2 5.8 41 33-73 28-69 (123)
77 2lfw_A PHYR sigma-like domain; 86.9 0.44 1.5E-05 37.3 3.3 50 28-78 92-141 (157)
78 2nnn_A Probable transcriptiona 86.6 1.6 5.4E-05 32.7 6.3 45 29-73 35-79 (140)
79 2q1z_A RPOE, ECF SIGE; ECF sig 86.5 0.4 1.4E-05 38.2 2.9 48 29-77 135-182 (184)
80 3eco_A MEPR; mutlidrug efflux 86.5 0.7 2.4E-05 34.8 4.2 46 28-73 27-74 (139)
81 2gxg_A 146AA long hypothetical 86.3 1.4 4.8E-05 33.3 5.9 45 28-73 33-77 (146)
82 2l8n_A Transcriptional repress 86.2 0.27 9.1E-06 32.9 1.4 22 47-68 10-31 (67)
83 2eth_A Transcriptional regulat 86.2 1.2 4.1E-05 34.3 5.5 46 28-73 40-85 (154)
84 3nrv_A Putative transcriptiona 86.0 1.6 5.6E-05 33.1 6.2 45 29-73 37-81 (148)
85 2fbi_A Probable transcriptiona 86.0 1.5 5E-05 33.0 5.8 45 29-73 33-77 (142)
86 2lkp_A Transcriptional regulat 85.8 1.7 5.8E-05 32.0 6.0 28 45-72 44-71 (119)
87 2htj_A P fimbrial regulatory p 85.8 1.8 6.2E-05 29.6 5.7 29 45-73 13-41 (81)
88 2pex_A Transcriptional regulat 85.8 1.4 4.8E-05 33.8 5.7 47 27-73 42-88 (153)
89 1ku9_A Hypothetical protein MJ 85.8 1.5 5E-05 33.3 5.8 42 30-72 24-67 (152)
90 3bro_A Transcriptional regulat 85.7 2.1 7.2E-05 32.1 6.6 46 28-73 30-77 (141)
91 3jw4_A Transcriptional regulat 85.7 0.73 2.5E-05 35.3 4.0 46 28-73 37-84 (148)
92 2a61_A Transcriptional regulat 85.6 1.9 6.3E-05 32.6 6.3 45 29-73 30-74 (145)
93 1z91_A Organic hydroperoxide r 85.6 1.4 4.9E-05 33.4 5.6 47 27-73 35-81 (147)
94 3k0l_A Repressor protein; heli 85.4 1.9 6.4E-05 33.5 6.3 45 28-72 42-86 (162)
95 1r71_A Transcriptional repress 85.2 1.4 4.8E-05 35.5 5.5 42 27-68 33-74 (178)
96 3bdd_A Regulatory protein MARR 85.2 1.9 6.5E-05 32.3 6.1 45 29-73 28-72 (142)
97 1on2_A Transcriptional regulat 85.0 1.8 6E-05 32.9 5.9 30 44-73 20-49 (142)
98 1l9z_H Sigma factor SIGA; heli 84.9 1.3 4.6E-05 40.9 5.9 48 28-75 374-424 (438)
99 2zcw_A TTHA1359, transcription 84.8 2.5 8.4E-05 33.9 7.0 64 29-94 116-193 (202)
100 3ryp_A Catabolite gene activat 84.8 1.4 4.9E-05 35.4 5.6 44 29-72 137-193 (210)
101 2frh_A SARA, staphylococcal ac 84.6 1.4 4.6E-05 33.0 4.9 46 28-73 33-80 (127)
102 3cjn_A Transcriptional regulat 84.5 1.7 5.9E-05 33.6 5.7 46 28-73 48-93 (162)
103 4aik_A Transcriptional regulat 84.4 1.6 5.4E-05 33.8 5.4 44 29-72 28-72 (151)
104 4hbl_A Transcriptional regulat 84.4 1.8 6.2E-05 33.1 5.7 45 28-72 37-81 (149)
105 2pg4_A Uncharacterized protein 84.3 1.1 3.8E-05 31.6 4.1 42 32-73 13-58 (95)
106 1l3l_A Transcriptional activat 84.2 4.2 0.00014 33.8 8.4 49 27-77 171-219 (234)
107 3b02_A Transcriptional regulat 84.1 3.5 0.00012 32.8 7.6 65 28-94 108-186 (195)
108 2fbh_A Transcriptional regulat 84.1 1.4 4.9E-05 33.2 5.0 45 29-73 34-79 (146)
109 3clo_A Transcriptional regulat 84.1 2 6.7E-05 36.5 6.3 48 28-77 196-243 (258)
110 2fmy_A COOA, carbon monoxide o 84.1 1.3 4.3E-05 36.2 5.0 63 29-93 136-214 (220)
111 2fa5_A Transcriptional regulat 84.0 2.3 7.9E-05 32.8 6.3 45 29-73 46-90 (162)
112 2oqg_A Possible transcriptiona 83.9 1.5 5E-05 31.9 4.8 39 33-73 23-61 (114)
113 2ao9_A Phage protein; structur 83.9 1.9 6.5E-05 33.9 5.5 42 28-69 22-71 (155)
114 2qww_A Transcriptional regulat 83.8 2 6.7E-05 32.9 5.8 44 29-72 38-81 (154)
115 3fmy_A HTH-type transcriptiona 83.8 1.1 3.8E-05 30.0 3.7 28 41-68 19-46 (73)
116 2oz6_A Virulence factor regula 83.7 1.8 6.2E-05 34.7 5.7 44 29-72 134-190 (207)
117 2p5k_A Arginine repressor; DNA 83.7 2.4 8.4E-05 27.2 5.4 36 34-69 5-47 (64)
118 1s3j_A YUSO protein; structura 83.6 1.7 6E-05 33.2 5.4 46 28-73 33-78 (155)
119 3bj6_A Transcriptional regulat 83.6 2 7E-05 32.7 5.8 46 28-73 36-81 (152)
120 2hr3_A Probable transcriptiona 83.5 2.2 7.4E-05 32.3 5.8 45 29-73 32-77 (147)
121 4ev0_A Transcription regulator 83.3 1.8 6.2E-05 35.0 5.6 65 30-96 140-212 (216)
122 1lj9_A Transcriptional regulat 83.3 1.4 4.9E-05 33.2 4.7 45 29-73 26-70 (144)
123 1tbx_A ORF F-93, hypothetical 83.2 1.4 4.7E-05 31.3 4.3 33 45-77 21-58 (99)
124 2xi8_A Putative transcription 83.2 0.96 3.3E-05 29.0 3.2 27 42-68 10-36 (66)
125 1rzs_A Antirepressor, regulato 83.2 0.43 1.5E-05 31.1 1.3 24 44-67 8-31 (61)
126 3iwz_A CAP-like, catabolite ac 83.2 2.1 7.2E-05 34.9 6.0 45 28-72 156-213 (230)
127 2q0o_A Probable transcriptiona 83.1 2.9 9.8E-05 34.9 6.9 49 27-77 173-221 (236)
128 3fx3_A Cyclic nucleotide-bindi 83.0 2.2 7.6E-05 35.1 6.1 67 27-95 149-225 (237)
129 2cfx_A HTH-type transcriptiona 83.0 2.8 9.7E-05 32.0 6.3 29 45-73 18-46 (144)
130 2hzt_A Putative HTH-type trans 82.9 1.8 6.1E-05 31.4 4.8 30 44-73 25-55 (107)
131 2bv6_A MGRA, HTH-type transcri 82.9 1.8 6E-05 32.7 5.0 45 29-73 34-78 (142)
132 3kp7_A Transcriptional regulat 82.9 2.3 7.9E-05 32.4 5.8 44 29-73 35-78 (151)
133 1l0o_C Sigma factor; bergerat 82.8 0.24 8.3E-06 41.2 0.0 45 28-73 197-241 (243)
134 2cyy_A Putative HTH-type trans 82.8 3.4 0.00012 31.8 6.8 44 30-73 5-48 (151)
135 2w25_A Probable transcriptiona 82.6 2.9 0.0001 32.1 6.3 28 45-72 20-47 (150)
136 2nyx_A Probable transcriptiona 82.6 2.3 7.9E-05 33.3 5.8 46 28-73 41-86 (168)
137 3la7_A Global nitrogen regulat 82.6 2 6.7E-05 35.8 5.6 44 29-72 162-219 (243)
138 3s2w_A Transcriptional regulat 82.6 0.74 2.5E-05 35.7 2.8 44 29-72 47-90 (159)
139 1xn7_A Hypothetical protein YH 82.4 2.2 7.4E-05 29.3 4.8 28 45-72 15-42 (78)
140 1u2w_A CADC repressor, cadmium 82.4 1.3 4.6E-05 33.0 4.1 34 40-73 48-83 (122)
141 1neq_A DNA-binding protein NER 82.3 1.4 4.7E-05 29.9 3.7 23 44-66 20-42 (74)
142 1zug_A Phage 434 CRO protein; 82.2 1.4 4.7E-05 28.8 3.7 27 42-68 12-38 (71)
143 2w48_A Sorbitol operon regulat 82.1 2.1 7.1E-05 37.6 5.8 37 36-72 11-47 (315)
144 3d0s_A Transcriptional regulat 82.1 3.5 0.00012 33.6 6.9 63 29-93 146-223 (227)
145 1r69_A Repressor protein CI; g 81.9 1.4 4.9E-05 28.5 3.7 27 42-68 10-36 (69)
146 3e6m_A MARR family transcripti 81.9 2.2 7.6E-05 33.0 5.4 45 29-73 50-94 (161)
147 2a6c_A Helix-turn-helix motif; 81.8 1.4 4.7E-05 30.2 3.7 26 43-68 28-53 (83)
148 2cg4_A Regulatory protein ASNC 81.7 3.5 0.00012 31.7 6.5 44 30-73 6-49 (152)
149 1p6r_A Penicillinase repressor 81.7 2.7 9.1E-05 28.7 5.1 43 29-72 6-53 (82)
150 1i1g_A Transcriptional regulat 81.7 2.6 8.9E-05 31.9 5.6 29 45-73 17-45 (141)
151 4ghj_A Probable transcriptiona 81.7 1.2 4E-05 32.3 3.3 37 32-68 33-71 (101)
152 3qq6_A HTH-type transcriptiona 81.6 1.4 4.9E-05 29.8 3.7 28 41-68 18-45 (78)
153 2hin_A GP39, repressor protein 81.6 1.2 4.1E-05 30.1 3.1 22 48-69 12-33 (71)
154 2dbb_A Putative HTH-type trans 81.6 3.4 0.00012 31.7 6.3 44 30-73 7-50 (151)
155 3bd1_A CRO protein; transcript 81.3 1.6 5.5E-05 29.5 3.8 25 44-69 10-34 (79)
156 3pqk_A Biofilm growth-associat 81.2 1.9 6.6E-05 30.7 4.4 30 44-73 34-63 (102)
157 2kko_A Possible transcriptiona 81.2 1.8 6E-05 31.5 4.3 30 44-73 36-65 (108)
158 2ovg_A Phage lambda CRO; trans 81.2 0.84 2.9E-05 30.3 2.2 21 48-68 15-35 (66)
159 2ofy_A Putative XRE-family tra 81.0 3.5 0.00012 28.1 5.6 34 35-68 16-49 (86)
160 3fm5_A Transcriptional regulat 81.0 2.1 7.3E-05 32.6 4.9 45 28-72 35-80 (150)
161 3omt_A Uncharacterized protein 80.8 1.4 4.8E-05 29.2 3.3 43 43-99 18-60 (73)
162 3f3x_A Transcriptional regulat 80.8 2.8 9.5E-05 31.6 5.5 44 29-73 34-77 (144)
163 2b5a_A C.BCLI; helix-turn-heli 80.8 1.6 5.5E-05 29.0 3.7 34 35-68 10-45 (77)
164 3hsr_A HTH-type transcriptiona 80.7 0.85 2.9E-05 34.6 2.5 46 28-73 32-77 (140)
165 1ub9_A Hypothetical protein PH 80.7 2.7 9.2E-05 29.5 5.1 29 45-73 29-57 (100)
166 3eus_A DNA-binding protein; st 80.7 1.7 5.9E-05 30.0 3.9 35 34-68 13-49 (86)
167 3e6c_C CPRK, cyclic nucleotide 80.7 1.5 5E-05 36.7 4.2 66 28-95 145-225 (250)
168 2p5v_A Transcriptional regulat 80.6 3.7 0.00013 32.0 6.3 45 29-73 7-51 (162)
169 2a6h_F RNA polymerase sigma fa 80.6 1.6 5.5E-05 40.2 4.6 47 29-75 360-409 (423)
170 3cdh_A Transcriptional regulat 80.5 2.4 8.2E-05 32.5 5.1 46 28-73 39-84 (155)
171 1r1t_A Transcriptional repress 80.4 2.8 9.4E-05 31.3 5.2 34 40-73 52-86 (122)
172 1okr_A MECI, methicillin resis 80.4 3.1 0.00011 30.5 5.5 44 29-73 7-55 (123)
173 2wiu_B HTH-type transcriptiona 80.4 2 6.9E-05 29.4 4.2 27 43-69 22-48 (88)
174 3jth_A Transcription activator 80.3 1.4 4.7E-05 31.3 3.3 33 41-73 30-63 (98)
175 3szt_A QCSR, quorum-sensing co 80.3 3.4 0.00012 34.5 6.4 49 27-77 173-221 (237)
176 1q1h_A TFE, transcription fact 80.2 3.1 0.00011 30.1 5.3 28 46-73 33-60 (110)
177 1gdt_A GD resolvase, protein ( 80.2 2.7 9.3E-05 33.6 5.5 38 27-68 143-180 (183)
178 2r1j_L Repressor protein C2; p 80.0 1.6 5.3E-05 28.2 3.3 26 43-68 15-40 (68)
179 1ft9_A Carbon monoxide oxidati 80.0 2 7E-05 35.0 4.8 45 29-73 132-190 (222)
180 3kz3_A Repressor protein CI; f 80.0 1.2 4.2E-05 30.2 2.8 25 44-68 23-47 (80)
181 3dkw_A DNR protein; CRP-FNR, H 79.9 2.4 8.1E-05 34.5 5.2 44 30-73 151-205 (227)
182 2f2e_A PA1607; transcription f 79.7 2.5 8.6E-05 32.6 4.9 38 40-77 30-69 (146)
183 3uj3_X DNA-invertase; helix-tu 79.6 0.37 1.3E-05 39.3 0.0 35 35-69 147-181 (193)
184 1vz0_A PARB, chromosome partit 79.6 3.2 0.00011 34.8 5.9 42 27-68 115-156 (230)
185 3kcc_A Catabolite gene activat 79.4 2.9 0.0001 35.2 5.7 44 29-72 187-243 (260)
186 1y7y_A C.AHDI; helix-turn-heli 79.3 1.9 6.6E-05 28.3 3.7 33 36-68 14-48 (74)
187 2pn6_A ST1022, 150AA long hypo 79.0 3.1 0.00011 31.9 5.3 28 46-73 17-44 (150)
188 3nqo_A MARR-family transcripti 79.0 3.6 0.00012 32.9 5.9 44 29-72 38-83 (189)
189 2ia0_A Putative HTH-type trans 79.0 4.4 0.00015 32.1 6.3 47 27-73 12-58 (171)
190 2fu4_A Ferric uptake regulatio 78.9 2.8 9.7E-05 28.5 4.5 29 45-73 32-65 (83)
191 2k9q_A Uncharacterized protein 78.8 1.7 5.9E-05 29.1 3.3 27 42-68 11-37 (77)
192 3b7h_A Prophage LP1 protein 11 78.8 2.2 7.5E-05 28.4 3.8 26 43-68 17-42 (78)
193 1fx7_A Iron-dependent represso 78.7 2.8 9.6E-05 35.0 5.2 42 32-73 7-51 (230)
194 1k78_A Paired box protein PAX5 78.6 9.4 0.00032 29.0 8.0 69 1-70 60-142 (149)
195 3bs3_A Putative DNA-binding pr 78.4 2.1 7.3E-05 28.3 3.7 27 42-68 19-45 (76)
196 2zkz_A Transcriptional repress 78.3 2.8 9.5E-05 29.9 4.5 29 45-73 40-68 (99)
197 2e1c_A Putative HTH-type trans 78.3 4.8 0.00016 31.9 6.3 46 28-73 23-68 (171)
198 1adr_A P22 C2 repressor; trans 78.2 1.9 6.3E-05 28.6 3.3 26 43-68 15-40 (76)
199 3s8q_A R-M controller protein; 78.1 2.3 7.9E-05 28.8 3.8 36 33-68 9-46 (82)
200 2gau_A Transcriptional regulat 78.1 5.5 0.00019 32.5 6.9 65 29-95 150-228 (232)
201 3f6o_A Probable transcriptiona 78.1 2 7E-05 31.7 3.8 30 44-73 29-58 (118)
202 3o9x_A Uncharacterized HTH-typ 78.1 1.9 6.6E-05 32.4 3.7 28 41-68 79-106 (133)
203 1mkm_A ICLR transcriptional re 78.1 3 0.0001 35.2 5.3 43 31-73 5-50 (249)
204 3u2r_A Regulatory protein MARR 77.9 2.8 9.6E-05 32.7 4.8 45 28-72 42-88 (168)
205 3boq_A Transcriptional regulat 77.9 2.3 7.7E-05 32.8 4.2 45 29-73 44-89 (160)
206 4b8x_A SCO5413, possible MARR- 77.6 3.3 0.00011 31.7 5.1 45 28-72 31-77 (147)
207 2ewt_A BLDD, putative DNA-bind 77.6 3.1 0.00011 27.1 4.3 25 44-68 19-45 (71)
208 3t76_A VANU, transcriptional r 77.6 2.3 7.7E-05 29.9 3.7 27 42-68 33-59 (88)
209 1yyv_A Putative transcriptiona 77.5 2.9 0.0001 31.6 4.6 35 39-73 40-76 (131)
210 2wte_A CSA3; antiviral protein 77.5 4.6 0.00016 34.1 6.3 45 29-73 149-193 (244)
211 3f6w_A XRE-family like protein 77.3 2.2 7.4E-05 29.0 3.5 33 36-68 15-49 (83)
212 2fxa_A Protease production reg 77.0 4.3 0.00015 33.2 5.8 46 28-73 44-89 (207)
213 2ppx_A AGR_C_3184P, uncharacte 76.9 2.5 8.4E-05 30.0 3.8 27 42-68 39-65 (99)
214 1zs4_A Regulatory protein CII; 76.6 2 6.7E-05 30.0 3.0 39 33-72 12-50 (83)
215 3e97_A Transcriptional regulat 76.5 3.7 0.00013 33.5 5.4 61 31-93 146-221 (231)
216 2xrn_A HTH-type transcriptiona 76.3 3.4 0.00012 34.7 5.1 42 32-73 4-48 (241)
217 2fsw_A PG_0823 protein; alpha- 76.0 3.5 0.00012 29.7 4.5 35 39-73 30-66 (107)
218 2h09_A Transcriptional regulat 76.0 4.5 0.00015 31.1 5.5 30 44-73 52-81 (155)
219 2obp_A Putative DNA-binding pr 76.0 5.2 0.00018 28.6 5.2 44 29-72 13-62 (96)
220 2ef8_A C.ECOT38IS, putative tr 75.9 2.7 9.2E-05 28.4 3.7 33 36-68 11-45 (84)
221 2kpj_A SOS-response transcript 75.8 2.3 7.9E-05 29.8 3.4 33 36-68 10-44 (94)
222 1lmb_3 Protein (lambda repress 75.8 1.8 6.2E-05 30.0 2.8 26 43-68 27-52 (92)
223 3qp6_A CVIR transcriptional re 75.7 14 0.00049 31.3 9.0 48 28-77 196-243 (265)
224 2bgc_A PRFA; bacterial infecti 75.5 3.3 0.00011 34.2 4.9 66 29-96 137-219 (238)
225 4ham_A LMO2241 protein; struct 75.1 6.6 0.00023 29.6 6.0 46 27-72 10-64 (134)
226 1pdn_C Protein (PRD paired); p 75.1 5.9 0.0002 28.8 5.7 68 1-69 45-126 (128)
227 3df8_A Possible HXLR family tr 74.9 4.2 0.00014 29.6 4.7 36 38-73 31-70 (111)
228 1x57_A Endothelial differentia 74.8 3.7 0.00013 28.4 4.2 46 41-100 21-66 (91)
229 1qpz_A PURA, protein (purine n 74.2 1.8 6.1E-05 38.0 2.9 22 48-69 2-23 (340)
230 2r0q_C Putative transposon TN5 74.0 3.1 0.0001 34.1 4.2 31 39-69 168-198 (209)
231 3f6v_A Possible transcriptiona 73.7 2.5 8.5E-05 32.9 3.3 30 44-73 69-98 (151)
232 2vn2_A DNAD, chromosome replic 73.3 6.4 0.00022 29.5 5.5 45 29-73 29-78 (128)
233 2ict_A Antitoxin HIGA; helix-t 73.3 3.5 0.00012 28.7 3.8 38 30-69 7-44 (94)
234 2k02_A Ferrous iron transport 73.0 4.8 0.00016 28.2 4.3 27 45-71 15-41 (87)
235 2ijl_A AGR_C_4647P, molybdenum 73.0 6.2 0.00021 30.1 5.3 43 35-78 28-70 (135)
236 2hsg_A Glucose-resistance amyl 72.8 1.7 5.9E-05 37.9 2.5 23 47-69 3-25 (332)
237 2o0y_A Transcriptional regulat 72.7 3 0.0001 35.5 3.9 47 27-73 16-65 (260)
238 3trb_A Virulence-associated pr 72.6 2.8 9.4E-05 30.4 3.2 40 28-68 10-49 (104)
239 1z7u_A Hypothetical protein EF 72.6 7.1 0.00024 28.3 5.5 30 44-73 33-63 (112)
240 2jsc_A Transcriptional regulat 72.5 4.1 0.00014 30.0 4.2 29 44-72 32-60 (118)
241 3cec_A Putative antidote prote 72.4 2.4 8.3E-05 30.3 2.8 38 29-68 16-53 (104)
242 4fx0_A Probable transcriptiona 72.3 6.4 0.00022 30.1 5.4 27 47-73 53-79 (148)
243 1sd4_A Penicillinase repressor 72.2 6.9 0.00024 28.7 5.5 44 28-72 6-54 (126)
244 3m8j_A FOCB protein; all-alpha 72.2 19 0.00065 26.3 7.4 36 35-70 48-84 (111)
245 3vk0_A NHTF, transcriptional r 72.2 6 0.0002 28.8 5.0 40 29-68 15-56 (114)
246 3kxa_A NGO0477 protein, putati 72.2 4.1 0.00014 31.2 4.2 29 41-69 76-104 (141)
247 2b0l_A GTP-sensing transcripti 72.2 3.3 0.00011 29.9 3.5 26 48-73 45-70 (102)
248 1sfu_A 34L protein; protein/Z- 71.9 5.7 0.00019 27.0 4.3 42 30-71 11-54 (75)
249 3g5g_A Regulatory protein; tra 71.9 4 0.00014 29.1 3.8 38 31-68 24-63 (99)
250 3iyd_F RNA polymerase sigma fa 71.6 2.7 9.2E-05 40.7 3.7 51 28-78 549-602 (613)
251 3n0r_A Response regulator; sig 71.5 9.2 0.00031 32.8 6.8 67 29-97 111-177 (286)
252 2l49_A C protein; P2 bacteriop 71.5 4.1 0.00014 28.6 3.9 27 42-68 13-39 (99)
253 3plo_X DNA-invertase; resolvas 71.5 0.82 2.8E-05 37.2 0.0 38 36-73 148-185 (193)
254 2g7u_A Transcriptional regulat 71.3 5 0.00017 34.0 5.0 91 28-119 8-116 (257)
255 2g9w_A Conserved hypothetical 71.2 3.7 0.00013 31.1 3.7 44 29-72 6-54 (138)
256 3h5t_A Transcriptional regulat 71.0 2.3 7.7E-05 37.8 2.8 23 47-69 10-32 (366)
257 3op9_A PLI0006 protein; struct 70.9 4.1 0.00014 29.5 3.8 27 42-68 18-44 (114)
258 1rr7_A Middle operon regulator 70.9 5.5 0.00019 30.1 4.6 29 45-73 91-119 (129)
259 2jvl_A TRMBF1; coactivator, he 70.8 5.7 0.00019 28.7 4.5 34 35-68 34-71 (107)
260 2auw_A Hypothetical protein NE 70.6 3.3 0.00011 33.0 3.3 30 39-68 96-125 (170)
261 3mlf_A Transcriptional regulat 70.5 5 0.00017 29.2 4.2 28 41-68 31-58 (111)
262 2fe3_A Peroxide operon regulat 70.5 13 0.00044 28.4 6.8 41 33-73 24-69 (145)
263 3kjx_A Transcriptional regulat 70.4 2 6.7E-05 37.8 2.3 23 47-69 11-33 (344)
264 1z4h_A TORI, TOR inhibition pr 70.3 3.5 0.00012 27.0 3.0 24 47-70 11-34 (66)
265 2o38_A Hypothetical protein; a 70.2 4 0.00014 30.3 3.7 34 35-68 40-75 (120)
266 1b0n_A Protein (SINR protein); 70.1 4.1 0.00014 29.2 3.7 27 42-68 10-36 (111)
267 3oou_A LIN2118 protein; protei 70.0 8.8 0.0003 27.4 5.5 30 42-71 17-46 (108)
268 3f52_A CLP gene regulator (CLG 69.9 6.3 0.00021 28.7 4.7 41 28-68 21-63 (117)
269 2qq9_A Diphtheria toxin repres 69.6 5 0.00017 33.3 4.5 41 33-73 8-51 (226)
270 4a5n_A Uncharacterized HTH-typ 69.3 7.1 0.00024 29.6 4.9 35 39-73 31-67 (131)
271 2fbk_A Transcriptional regulat 69.1 6.1 0.00021 31.1 4.8 46 28-73 65-113 (181)
272 3cta_A Riboflavin kinase; stru 69.0 6.8 0.00023 32.5 5.3 27 46-72 27-53 (230)
273 2k4b_A Transcriptional regulat 69.0 4 0.00014 29.3 3.3 43 29-72 32-79 (99)
274 3tqn_A Transcriptional regulat 68.9 4.4 0.00015 29.6 3.6 25 48-72 35-59 (113)
275 3i4p_A Transcriptional regulat 68.8 7.9 0.00027 30.2 5.3 28 46-73 17-44 (162)
276 1xwr_A Regulatory protein CII; 68.6 4.2 0.00014 29.2 3.3 36 36-72 14-49 (97)
277 3ivp_A Putative transposon-rel 68.2 4.6 0.00016 29.9 3.7 27 42-68 21-47 (126)
278 1j5y_A Transcriptional regulat 68.0 7.8 0.00027 31.0 5.3 42 32-73 19-63 (187)
279 1ixc_A CBNR, LYSR-type regulat 68.0 7.2 0.00025 32.7 5.3 43 35-78 5-47 (294)
280 2eby_A Putative HTH-type trans 67.9 3.2 0.00011 30.1 2.7 26 43-68 21-46 (113)
281 2ia2_A Putative transcriptiona 67.6 4.9 0.00017 34.3 4.1 92 28-119 15-123 (265)
282 3mn2_A Probable ARAC family tr 67.1 10 0.00035 27.1 5.3 28 43-70 15-42 (108)
283 1r7j_A Conserved hypothetical 66.9 17 0.00058 25.6 6.3 43 31-73 5-47 (95)
284 3neu_A LIN1836 protein; struct 66.0 5.1 0.00017 29.9 3.5 45 28-72 10-63 (125)
285 2h8r_A Hepatocyte nuclear fact 65.7 4.5 0.00015 33.7 3.3 32 37-68 35-66 (221)
286 1uly_A Hypothetical protein PH 65.4 6.5 0.00022 31.8 4.3 29 44-72 31-59 (192)
287 2wus_R RODZ, putative uncharac 65.3 5.2 0.00018 29.3 3.3 28 42-69 16-43 (112)
288 3hrs_A Metalloregulator SCAR; 65.0 8.5 0.00029 31.6 5.0 39 35-73 6-47 (214)
289 1j9i_A GPNU1 DBD;, terminase s 64.9 2.2 7.5E-05 28.2 1.1 25 47-71 3-27 (68)
290 2v79_A DNA replication protein 64.7 15 0.0005 27.9 5.9 44 29-72 29-77 (135)
291 2di3_A Bacterial regulatory pr 64.4 15 0.0005 30.5 6.5 52 1-72 1-54 (239)
292 1ic8_A Hepatocyte nuclear fact 64.4 5.7 0.00019 32.4 3.7 27 42-68 39-65 (194)
293 3by6_A Predicted transcription 64.3 6 0.00021 29.6 3.6 45 29-73 9-62 (126)
294 3fzv_A Probable transcriptiona 64.1 8.9 0.0003 32.3 5.2 43 35-78 8-50 (306)
295 2esn_A Probable transcriptiona 63.4 8.8 0.0003 32.5 5.0 43 35-78 14-56 (310)
296 3k2z_A LEXA repressor; winged 63.1 11 0.00039 30.2 5.4 27 46-72 24-50 (196)
297 3e7l_A Transcriptional regulat 63.0 15 0.00053 23.5 5.0 26 44-69 30-55 (63)
298 1o5l_A Transcriptional regulat 62.9 1.5 5.3E-05 35.6 0.0 43 29-71 140-189 (213)
299 3r4k_A Transcriptional regulat 62.8 5.7 0.00019 33.7 3.6 87 32-119 4-110 (260)
300 1a04_A Nitrate/nitrite respons 62.1 9.5 0.00033 30.5 4.8 47 29-77 154-200 (215)
301 3fxq_A LYSR type regulator of 61.9 11 0.00038 31.9 5.4 42 36-78 7-48 (305)
302 3c3w_A Two component transcrip 61.8 10 0.00034 30.9 4.9 48 28-77 148-195 (225)
303 2o20_A Catabolite control prot 61.6 1.7 5.7E-05 38.0 0.0 23 47-69 6-28 (332)
304 3ctp_A Periplasmic binding pro 61.5 1.7 5.8E-05 38.0 0.0 22 48-69 4-25 (330)
305 3bdn_A Lambda repressor; repre 61.5 6.8 0.00023 32.4 3.8 41 29-69 6-53 (236)
306 3mq0_A Transcriptional repress 61.2 7.7 0.00026 33.2 4.2 47 28-74 24-73 (275)
307 1ntc_A Protein (nitrogen regul 61.1 12 0.00041 26.1 4.5 28 43-70 61-88 (91)
308 3bil_A Probable LACI-family tr 60.7 1.8 6.1E-05 38.3 0.0 23 47-69 9-31 (348)
309 3h5o_A Transcriptional regulat 60.4 1.8 6.2E-05 37.9 0.0 23 47-69 5-27 (339)
310 3lfp_A CSP231I C protein; tran 60.2 9.3 0.00032 26.7 3.9 27 42-68 10-40 (98)
311 3dbi_A Sugar-binding transcrip 60.1 1.9 6.3E-05 37.8 0.0 23 47-69 4-26 (338)
312 2ek5_A Predicted transcription 60.0 7.5 0.00026 29.2 3.5 25 48-72 30-54 (129)
313 1jye_A Lactose operon represso 60.0 1.9 6.4E-05 38.1 0.0 24 47-70 4-27 (349)
314 1v4r_A Transcriptional repress 59.8 3.9 0.00013 29.2 1.8 23 48-70 37-59 (102)
315 2k9s_A Arabinose operon regula 59.6 13 0.00046 26.3 4.7 27 45-71 19-45 (107)
316 1u8b_A ADA polyprotein; protei 59.6 14 0.00049 27.4 5.0 39 33-71 78-118 (133)
317 3lsg_A Two-component response 59.3 19 0.00065 25.3 5.5 26 46-71 19-44 (103)
318 3jvd_A Transcriptional regulat 59.2 2 6.7E-05 37.7 0.0 23 47-69 7-29 (333)
319 3hhg_A Transcriptional regulat 58.6 13 0.00046 31.1 5.3 42 36-78 8-49 (306)
320 2y75_A HTH-type transcriptiona 58.6 16 0.00055 27.0 5.2 28 46-73 26-53 (129)
321 3e3m_A Transcriptional regulat 58.5 2.1 7E-05 37.9 0.0 23 47-69 13-35 (355)
322 3fym_A Putative uncharacterize 57.8 8.1 0.00028 29.0 3.3 27 42-68 12-38 (130)
323 2k27_A Paired box protein PAX- 57.5 15 0.00051 28.2 5.0 26 45-70 100-135 (159)
324 3hot_A Transposable element ma 56.5 15 0.00051 32.0 5.4 40 33-72 9-55 (345)
325 3oio_A Transcriptional regulat 56.3 11 0.00038 27.1 3.8 26 45-70 22-47 (113)
326 1yio_A Response regulatory pro 56.1 15 0.0005 29.1 4.9 47 29-77 142-188 (208)
327 3dn7_A Cyclic nucleotide bindi 55.7 2.4 8.3E-05 33.6 0.0 43 29-71 148-193 (194)
328 1p4x_A Staphylococcal accessor 55.1 18 0.00062 30.5 5.5 46 28-73 154-201 (250)
329 2o3f_A Putative HTH-type trans 55.1 14 0.00046 27.0 4.1 24 46-69 39-62 (111)
330 1z05_A Transcriptional regulat 55.0 16 0.00054 33.3 5.5 30 44-73 51-80 (429)
331 1umq_A Photosynthetic apparatu 54.9 19 0.00066 24.7 4.6 35 35-69 43-77 (81)
332 2p4w_A Transcriptional regulat 54.5 18 0.0006 29.5 5.1 29 44-72 26-54 (202)
333 1y9q_A Transcriptional regulat 54.3 11 0.00039 29.9 3.9 34 35-68 11-46 (192)
334 3b73_A PHIH1 repressor-like pr 54.1 13 0.00043 27.3 3.7 29 45-73 26-56 (111)
335 1bja_A Transcription regulator 53.5 17 0.00058 25.8 4.2 43 29-72 13-57 (95)
336 1jhf_A LEXA repressor; LEXA SO 53.4 21 0.00072 28.6 5.4 29 45-73 22-53 (202)
337 2fjr_A Repressor protein CI; g 53.4 18 0.00061 28.6 4.9 29 40-68 14-42 (189)
338 2yu3_A DNA-directed RNA polyme 52.5 39 0.0013 23.9 5.9 46 27-72 32-79 (95)
339 1g2h_A Transcriptional regulat 52.5 35 0.0012 21.6 5.3 23 47-69 34-56 (61)
340 3klo_A Transcriptional regulat 52.4 15 0.00051 29.7 4.4 44 29-74 159-202 (225)
341 1z6r_A MLC protein; transcript 52.2 18 0.0006 32.6 5.2 35 39-73 21-57 (406)
342 3isp_A HTH-type transcriptiona 51.6 14 0.00049 31.0 4.4 36 43-78 17-52 (303)
343 1bia_A BIRA bifunctional prote 51.6 21 0.00072 31.2 5.5 36 38-73 9-46 (321)
344 1l8q_A Chromosomal replication 51.3 23 0.0008 30.5 5.7 51 27-77 254-305 (324)
345 3szp_A Transcriptional regulat 51.3 17 0.00057 30.1 4.7 36 43-78 12-47 (291)
346 1bl0_A Protein (multiple antib 50.6 17 0.00057 26.9 4.1 28 44-71 25-52 (129)
347 1hsj_A Fusion protein consisti 50.3 32 0.0011 31.6 6.8 45 28-72 400-446 (487)
348 3iwf_A Transcription regulator 50.1 14 0.00048 26.8 3.4 25 46-70 35-59 (107)
349 2hoe_A N-acetylglucosamine kin 49.4 18 0.00063 32.2 4.8 30 44-73 31-60 (380)
350 2p5t_A Putative transcriptiona 49.1 3.6 0.00012 32.0 0.0 26 43-68 11-36 (158)
351 2bnm_A Epoxidase; oxidoreducta 48.7 13 0.00043 29.7 3.3 34 36-69 11-46 (198)
352 3mkl_A HTH-type transcriptiona 48.4 18 0.00063 26.2 3.9 26 44-69 21-46 (120)
353 3u1d_A Uncharacterized protein 48.3 34 0.0011 26.5 5.5 40 34-73 30-73 (151)
354 2o03_A Probable zinc uptake re 48.1 16 0.00054 27.3 3.6 27 46-72 26-57 (131)
355 2o0m_A Transcriptional regulat 47.8 3.9 0.00013 36.4 0.0 36 36-72 25-60 (345)
356 2p8t_A Hypothetical protein PH 47.7 34 0.0012 27.9 5.7 46 27-73 12-57 (200)
357 3t8r_A Staphylococcus aureus C 45.7 37 0.0013 25.7 5.4 44 30-73 6-55 (143)
358 1eto_A FIS, factor for inversi 45.7 37 0.0013 24.0 5.1 27 43-69 68-94 (98)
359 3vpr_A Transcriptional regulat 45.6 13 0.00046 28.8 3.0 25 46-70 23-47 (190)
360 1b4a_A Arginine repressor; hel 45.3 35 0.0012 26.3 5.2 26 45-70 18-48 (149)
361 3mn2_A Probable ARAC family tr 44.7 65 0.0022 22.6 6.4 40 32-71 52-95 (108)
362 2opt_A Actii protein; helical 44.6 35 0.0012 28.0 5.6 43 27-69 3-49 (234)
363 2fq4_A Transcriptional regulat 44.5 11 0.00036 29.6 2.2 22 46-67 32-53 (192)
364 1hw1_A FADR, fatty acid metabo 44.4 17 0.00059 29.9 3.6 25 48-72 33-57 (239)
365 2wv0_A YVOA, HTH-type transcri 44.4 17 0.0006 30.3 3.6 27 47-73 35-61 (243)
366 3lsg_A Two-component response 44.3 62 0.0021 22.4 6.2 39 33-71 54-94 (103)
367 3edp_A LIN2111 protein; APC883 43.8 18 0.00063 30.0 3.6 25 48-72 35-59 (236)
368 1al3_A Cys regulon transcripti 43.6 4.9 0.00017 34.7 0.0 43 36-78 6-48 (324)
369 3f8m_A GNTR-family protein tra 43.2 19 0.00065 30.2 3.6 44 29-72 12-62 (248)
370 3oou_A LIN2118 protein; protei 42.7 66 0.0022 22.6 6.2 39 33-71 56-96 (108)
371 2zcm_A Biofilm operon icaabcd 42.6 13 0.00045 28.8 2.5 43 32-74 9-55 (192)
372 1y6u_A XIS, excisionase from t 42.5 20 0.00067 23.8 2.9 24 46-69 16-39 (70)
373 2d6y_A Putative TETR family re 42.1 16 0.00054 28.9 2.9 32 46-77 28-59 (202)
374 3bwg_A Uncharacterized HTH-typ 42.0 20 0.00069 29.8 3.6 25 48-72 31-55 (239)
375 2hxi_A Putative transcriptiona 41.5 33 0.0011 28.2 5.0 43 27-69 26-72 (241)
376 3eet_A Putative GNTR-family tr 41.1 21 0.0007 30.5 3.6 45 28-72 26-79 (272)
377 2i10_A Putative TETR transcrip 41.0 17 0.00059 28.7 3.0 24 46-69 31-54 (202)
378 1xmk_A Double-stranded RNA-spe 41.0 37 0.0013 23.1 4.2 40 32-72 12-52 (79)
379 3bhq_A Transcriptional regulat 40.5 18 0.0006 28.7 3.0 25 46-70 32-56 (211)
380 2eh3_A Transcriptional regulat 40.5 13 0.00046 28.5 2.2 23 46-68 22-44 (179)
381 3ic7_A Putative transcriptiona 40.3 7 0.00024 29.2 0.4 25 48-72 37-61 (126)
382 3gzi_A Transcriptional regulat 40.2 18 0.00062 28.5 3.0 32 46-77 37-68 (218)
383 3qkx_A Uncharacterized HTH-typ 39.9 14 0.00049 28.3 2.3 32 46-77 28-59 (188)
384 2xig_A Ferric uptake regulatio 39.8 36 0.0012 26.0 4.5 29 45-73 41-74 (150)
385 2v57_A TETR family transcripti 39.5 15 0.0005 28.4 2.3 33 45-77 31-63 (190)
386 1p4x_A Staphylococcal accessor 39.4 25 0.00086 29.6 3.8 46 28-73 30-77 (250)
387 3bqz_B HTH-type transcriptiona 39.3 16 0.00055 28.2 2.5 32 46-77 22-53 (194)
388 3lwj_A Putative TETR-family tr 39.2 15 0.0005 28.7 2.2 32 46-77 32-63 (202)
389 2qtq_A Transcriptional regulat 39.0 20 0.00067 28.1 3.0 47 31-77 16-67 (213)
390 2hyt_A TETR-family transcripti 38.8 19 0.00064 28.2 2.8 29 46-74 32-60 (197)
391 1fc3_A SPO0A; response regulat 38.7 27 0.00091 26.0 3.4 33 45-77 47-79 (120)
392 3on4_A Transcriptional regulat 38.6 13 0.00044 28.6 1.8 32 46-77 30-61 (191)
393 2wui_A MEXZ, transcriptional r 38.4 15 0.00051 29.1 2.2 22 46-67 31-52 (210)
394 2nx4_A Transcriptional regulat 38.4 15 0.00052 28.7 2.2 24 46-69 30-53 (194)
395 3rkx_A Biotin-[acetyl-COA-carb 38.3 55 0.0019 28.6 6.0 30 46-75 19-48 (323)
396 2jj7_A Hemolysin II regulatory 38.3 15 0.00052 28.2 2.2 31 46-76 27-57 (186)
397 2k9s_A Arabinose operon regula 38.3 99 0.0034 21.5 6.5 39 33-71 55-95 (107)
398 3egq_A TETR family transcripti 38.3 14 0.00046 28.1 1.8 24 46-69 24-47 (170)
399 1mzb_A Ferric uptake regulatio 37.9 45 0.0016 24.9 4.8 28 46-73 34-66 (136)
400 3dew_A Transcriptional regulat 37.4 14 0.00049 28.7 1.9 31 46-76 28-58 (206)
401 3ppb_A Putative TETR family tr 37.2 16 0.00056 28.0 2.2 32 46-77 29-60 (195)
402 3anp_C Transcriptional repress 36.9 16 0.00056 28.6 2.2 24 46-69 29-52 (204)
403 4aci_A HTH-type transcriptiona 36.8 16 0.00056 28.1 2.2 32 46-77 34-65 (191)
404 3vib_A MTRR; helix-turn-helix 36.8 17 0.00057 28.8 2.2 23 46-68 30-52 (210)
405 2gqq_A Leucine-responsive regu 36.8 11 0.00037 29.3 1.0 30 44-73 25-54 (163)
406 3c2b_A Transcriptional regulat 36.6 19 0.00066 28.5 2.6 24 46-69 35-58 (221)
407 2gen_A Probable transcriptiona 36.4 19 0.00064 28.3 2.5 24 46-69 27-50 (197)
408 2dg7_A Putative transcriptiona 36.4 45 0.0015 25.7 4.8 32 46-77 27-58 (195)
409 3lhq_A Acrab operon repressor 36.3 17 0.00058 28.6 2.2 32 46-77 34-65 (220)
410 3dpj_A Transcription regulator 36.3 17 0.00059 28.1 2.2 31 46-76 28-58 (194)
411 2xdn_A HTH-type transcriptiona 36.2 16 0.00055 28.9 2.0 24 46-69 31-54 (210)
412 2f07_A YVDT; helix-turn-helix, 36.1 17 0.00059 28.5 2.2 23 46-68 30-52 (197)
413 2ibd_A Possible transcriptiona 35.9 18 0.00061 28.5 2.3 24 46-69 34-57 (204)
414 3knw_A Putative transcriptiona 35.6 18 0.0006 28.4 2.2 32 46-77 34-65 (212)
415 3kz9_A SMCR; transcriptional r 35.6 18 0.00061 28.1 2.2 32 46-77 37-68 (206)
416 2g7s_A Transcriptional regulat 35.4 16 0.00054 28.1 1.8 32 46-77 28-59 (194)
417 1pb6_A Hypothetical transcript 35.4 19 0.00064 28.2 2.3 31 46-76 38-68 (212)
418 2rae_A Transcriptional regulat 35.1 59 0.002 25.2 5.3 50 28-77 14-68 (207)
419 3ljl_A Transcriptional regulat 35.0 14 0.00047 27.9 1.4 24 46-69 34-57 (156)
420 3sxy_A Transcriptional regulat 34.8 29 0.001 28.1 3.5 47 47-93 36-84 (218)
421 2yve_A Transcriptional regulat 34.7 19 0.00065 27.9 2.2 31 46-76 24-54 (185)
422 3bjb_A Probable transcriptiona 34.6 16 0.00055 29.0 1.8 23 46-68 42-64 (207)
423 3c7j_A Transcriptional regulat 34.5 32 0.0011 28.5 3.7 27 47-73 50-76 (237)
424 2hku_A A putative transcriptio 34.3 45 0.0015 26.2 4.5 33 45-77 38-70 (215)
425 1b9m_A Protein (mode); DNA-bin 34.3 32 0.0011 28.7 3.7 43 35-78 24-66 (265)
426 2dg8_A Putative TETR-family tr 34.2 17 0.00057 28.3 1.8 32 46-77 29-60 (193)
427 3f1b_A TETR-like transcription 34.2 20 0.00068 27.8 2.3 32 46-77 34-65 (203)
428 3frq_A Repressor protein MPHR( 34.0 17 0.0006 28.2 1.9 46 32-77 10-59 (195)
429 2oer_A Probable transcriptiona 33.9 20 0.00067 28.6 2.2 24 46-69 44-67 (214)
430 3cwr_A Transcriptional regulat 33.9 17 0.00058 28.3 1.8 24 46-69 37-60 (208)
431 2gfn_A HTH-type transcriptiona 33.8 19 0.00065 28.6 2.1 24 46-69 29-52 (209)
432 1vi0_A Transcriptional regulat 33.8 17 0.00059 28.8 1.8 25 46-70 28-52 (206)
433 1ais_B TFB TFIIB, protein (tra 33.4 62 0.0021 25.7 5.2 36 42-77 161-196 (200)
434 3oio_A Transcriptional regulat 33.3 1E+02 0.0036 21.7 6.0 39 33-71 58-98 (113)
435 2w57_A Ferric uptake regulatio 33.3 34 0.0011 26.2 3.4 28 46-73 33-65 (150)
436 3f0c_A TETR-molecule A, transc 33.3 20 0.00069 28.2 2.2 32 46-77 31-62 (216)
437 3crj_A Transcription regulator 33.2 14 0.00048 29.1 1.2 21 46-66 34-54 (199)
438 2qwt_A Transcriptional regulat 33.0 21 0.00071 28.0 2.2 32 46-77 32-63 (196)
439 3rh2_A Hypothetical TETR-like 32.9 18 0.00062 28.6 1.8 24 46-69 23-46 (212)
440 3qbm_A TETR transcriptional re 32.6 14 0.00049 28.6 1.2 24 46-69 27-50 (199)
441 2g3b_A Putative TETR-family tr 32.6 19 0.00065 28.6 1.9 30 46-75 23-52 (208)
442 2o7t_A Transcriptional regulat 32.5 19 0.00063 28.2 1.8 32 46-77 28-59 (199)
443 3vp5_A Transcriptional regulat 32.4 21 0.00073 27.8 2.2 32 46-77 32-63 (189)
444 2zb9_A Putative transcriptiona 32.4 19 0.00063 28.5 1.8 24 46-69 43-66 (214)
445 2id6_A Transcriptional regulat 32.4 19 0.00065 28.3 1.9 32 46-77 25-56 (202)
446 2np5_A Transcriptional regulat 32.4 19 0.00064 28.4 1.8 23 46-68 29-51 (203)
447 1ylf_A RRF2 family protein; st 32.1 57 0.0019 24.7 4.5 27 47-73 31-57 (149)
448 1c9b_A General transcription f 32.0 36 0.0012 27.4 3.5 34 44-77 157-190 (207)
449 1rkt_A Protein YFIR; transcrip 32.0 15 0.00051 29.0 1.2 22 46-67 32-53 (205)
450 3s5r_A Transcriptional regulat 32.0 21 0.00071 28.1 2.1 30 46-75 30-59 (216)
451 3bru_A Regulatory protein, TET 32.0 22 0.00074 28.2 2.2 32 46-77 50-81 (222)
452 2guh_A Putative TETR-family tr 32.0 25 0.00087 28.1 2.6 31 47-77 60-90 (214)
453 2lnb_A Z-DNA-binding protein 1 32.0 1.1E+02 0.0036 20.8 5.1 40 32-71 20-59 (80)
454 3dcf_A Transcriptional regulat 31.7 22 0.00076 27.9 2.2 47 31-77 31-82 (218)
455 1o57_A PUR operon repressor; p 31.6 1.8E+02 0.0061 24.9 8.1 68 33-101 6-89 (291)
456 1ui5_A A-factor receptor homol 31.6 22 0.00076 28.3 2.2 23 46-68 29-51 (215)
457 1sgm_A Putative HTH-type trans 31.6 17 0.00057 28.0 1.4 32 46-77 26-58 (191)
458 2hs5_A Putative transcriptiona 31.6 35 0.0012 28.2 3.5 46 47-92 52-99 (239)
459 3o60_A LIN0861 protein; PSI, M 31.5 23 0.00078 27.8 2.2 45 32-76 20-70 (185)
460 2g7g_A RHA04620, putative tran 31.3 36 0.0012 27.2 3.5 40 29-69 10-52 (213)
461 3b81_A Transcriptional regulat 31.3 16 0.00053 28.5 1.2 24 46-69 31-54 (203)
462 2id3_A Putative transcriptiona 31.3 26 0.0009 28.1 2.6 25 46-70 60-84 (225)
463 3loc_A HTH-type transcriptiona 31.2 18 0.0006 28.4 1.5 24 46-69 38-61 (212)
464 4hku_A LMO2814 protein, TETR t 31.2 12 0.00041 29.0 0.4 36 30-65 7-46 (178)
465 3k69_A Putative transcription 31.1 60 0.0021 25.2 4.6 26 47-72 29-54 (162)
466 3kkc_A TETR family transcripti 31.0 13 0.00045 28.3 0.6 20 46-65 32-51 (177)
467 2rek_A Putative TETR-family tr 30.9 20 0.00069 27.9 1.8 32 46-77 35-66 (199)
468 3v6g_A Probable transcriptiona 30.9 24 0.00081 28.2 2.2 25 46-70 34-58 (208)
469 3cjd_A Transcriptional regulat 30.8 21 0.00071 28.1 1.8 30 46-75 32-61 (198)
470 3cdl_A Transcriptional regulat 30.8 17 0.00058 28.6 1.3 20 46-65 29-48 (203)
471 3c19_A Uncharacterized protein 30.7 27 0.00093 28.0 2.4 28 109-146 38-65 (186)
472 2qlz_A Transcription factor PF 30.4 21 0.00073 29.7 1.9 41 33-73 12-52 (232)
473 3g7r_A Putative transcriptiona 30.3 24 0.00083 28.2 2.2 32 46-77 55-86 (221)
474 2fbq_A Probable transcriptiona 30.3 26 0.0009 28.3 2.5 24 46-69 27-50 (235)
475 1t33_A Putative transcriptiona 30.1 30 0.001 27.3 2.8 31 47-77 32-62 (224)
476 1u3e_M HNH homing endonuclease 30.1 23 0.00077 28.0 1.9 27 43-69 132-158 (174)
477 4g6q_A Putative uncharacterize 29.9 55 0.0019 25.9 4.2 30 44-73 34-64 (182)
478 3bni_A Putative TETR-family tr 29.3 26 0.00087 28.3 2.2 32 46-77 63-94 (229)
479 3ihu_A Transcriptional regulat 29.2 38 0.0013 27.5 3.3 65 28-92 13-87 (222)
480 3gbg_A TCP pilus virulence reg 29.1 1.4E+02 0.0049 24.6 7.0 28 42-69 181-208 (276)
481 3pas_A TETR family transcripti 29.1 20 0.00068 27.5 1.4 32 46-77 28-59 (195)
482 3ccy_A Putative TETR-family tr 29.1 15 0.0005 28.9 0.6 22 46-67 34-55 (203)
483 3col_A Putative transcription 29.1 16 0.00054 28.2 0.8 24 46-69 30-53 (196)
484 3mvp_A TETR/ACRR transcription 29.0 23 0.00079 27.8 1.8 31 46-76 46-76 (217)
485 2g7l_A TETR-family transcripti 28.9 36 0.0012 28.1 3.1 42 27-68 16-61 (243)
486 2fd5_A Transcriptional regulat 28.9 16 0.00054 28.0 0.8 21 46-66 27-47 (180)
487 3mnl_A KSTR, transcriptional r 28.8 20 0.00068 27.9 1.4 25 46-70 40-64 (203)
488 3lsj_A DEST; transcriptional r 28.8 23 0.00078 28.1 1.8 33 36-68 17-54 (220)
489 2zcx_A SCO7815, TETR-family tr 28.7 27 0.00092 28.4 2.2 32 46-77 43-74 (231)
490 3nxc_A HTH-type protein SLMA; 28.5 17 0.0006 28.4 1.0 45 32-76 25-75 (212)
491 2qko_A Possible transcriptiona 28.5 23 0.00078 28.0 1.7 24 46-69 48-71 (215)
492 2w53_A Repressor, SMet; antibi 28.3 19 0.00064 28.7 1.2 23 46-68 31-53 (219)
493 4a0z_A Transcription factor FA 28.3 92 0.0031 24.9 5.3 40 30-69 8-49 (190)
494 2xpw_A Tetracycline repressor 28.3 49 0.0017 26.4 3.7 39 30-68 3-45 (207)
495 3nnr_A Transcriptional regulat 28.2 24 0.00082 28.2 1.8 24 46-69 25-48 (228)
496 3mwm_A ZUR, putative metal upt 28.2 42 0.0014 25.3 3.1 28 46-73 29-61 (139)
497 3pxp_A Helix-turn-helix domain 28.1 58 0.002 28.1 4.3 24 45-68 24-47 (292)
498 3e7q_A Transcriptional regulat 28.0 19 0.00065 28.2 1.1 32 46-77 34-65 (215)
499 3l7w_A Putative uncharacterize 27.8 51 0.0017 23.4 3.4 36 38-73 13-53 (108)
500 2q24_A Putative TETR family tr 27.8 27 0.00092 27.1 2.0 28 47-74 35-62 (194)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.07 E-value=0.0015 Score=40.66 Aligned_cols=42 Identities=2% Similarity=0.097 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
...++.+++..+... +..|.++.++|..+|||.+||++++.+
T Consensus 3 ~~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 3 GSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp SCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 356888877666554 468999999999999999999998864
No 2
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=96.94 E-value=0.0017 Score=42.67 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc----HHHHHhhhCCChhhHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLS----MRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~----~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+...|++.++-+ +.++..|.+ ..++|..||||.+|+++|+...
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567899999998 788888989 9999999999999999998754
No 3
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.64 E-value=0.0037 Score=45.84 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHhhhcCcccccCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcc
Q psy4300 1 MRKTTFGFLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMS 75 (307)
Q Consensus 1 ms~~~F~~L~~~l~~~~~~~~~~~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~ 75 (307)
||.++|+.+...+ .++ +..+-++=.||-.|.++.++|..+|+|+++|+|.+.+..+...
T Consensus 5 mT~~eFe~~~~~l---------------~~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 5 LTESQFQEAIQGL---------------EVG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCHHHHHHHHTTC---------------CCC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccC---------------ChH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 7889999887554 121 2346667778899999999999999999999999999877753
No 4
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=96.43 E-value=0.0036 Score=45.84 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHH-----HhcC-CcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 29 FVPVEKKTLVALSY-----MATQ-LSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 29 ~~~~~~~l~i~L~~-----L~~g-~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
-+++.++-.+.++| |..| .+|++||...|+|.|||+|+ .+.+.-+...
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~ 88 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVE 88 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHH
Confidence 57888887777775 3467 99999999999999999999 7776665554
No 5
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=96.40 E-value=0.0057 Score=44.33 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMAT-QLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~-g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
++.+|.+.++.++-.++.. |.+..++|..||||.+|+++|+.+.-
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3578899999888888877 99999999999999999999998764
No 6
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=96.21 E-value=0.015 Score=39.07 Aligned_cols=51 Identities=12% Similarity=0.362 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHH-H--hcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 28 PFVPVEKKTLVALSY-M--ATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~-L--~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
..+|+.++-.+.|+| | ..|.++.++|..+|+|.+||...+.+....|-..+
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 368999999999988 3 57999999999999999999999999998888774
No 7
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=95.87 E-value=0.018 Score=40.87 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+..++.+.+..+.-.+ ..|.+..++|..||||++|+++|+.+.-.
T Consensus 20 ~~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CSSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4578888877666555 67899999999999999999999876543
No 8
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=95.85 E-value=0.0072 Score=37.79 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.++.++. ..++..+..|.+..++|..+|||++|+++++.+
T Consensus 5 ~~~~~~~-~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQ-EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHH-HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4444433 333444678899999999999999999998753
No 9
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=95.78 E-value=0.025 Score=38.51 Aligned_cols=50 Identities=6% Similarity=0.169 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHH-h--cCCcHHHHHhhhCCChhhHHHHHHHHHHHcc-cc
Q psy4300 28 PFVPVEKKTLVALSYM-A--TQLSMRKIGDQFNLADSTVWSCIDSFLTAMS-QP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L-~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~-~~ 77 (307)
..+|+.++-.+.|+|+ . .|.++.++|..+|+|.+||.....+....|- ..
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~ 62 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHE 62 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhH
Confidence 4689999999999885 3 7899999999999999999999999988887 55
No 10
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=95.77 E-value=0.023 Score=40.23 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHH-h--cCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 28 PFVPVEKKTLVALSYM-A--TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L-~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
..+|+.++-.+.|+|+ . .|.|+.++|..+|+|.+||...+.+....|-..+
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999984 4 7899999999999999999999999998888774
No 11
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=95.68 E-value=0.031 Score=37.35 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
..+|+.++-.+.|+|+ .|.++.++|..+|+|.+||.+.+.+....|-..+
T Consensus 14 ~~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3588888888877764 6899999999999999999999999988887764
No 12
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=95.25 E-value=0.047 Score=39.50 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
....+.+.++.+++.++..+.+..++|..|+||.+++.+|...+...-...
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~~~G~~~ 80 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA 80 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTS
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHH
Confidence 567999999999999999999999999999999999999988875444444
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=95.22 E-value=0.079 Score=38.58 Aligned_cols=51 Identities=12% Similarity=0.323 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHH---hcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 28 PFVPVEKKTLVALSYM---ATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L---~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
..+|+.++-.+.|+|. ..|.++.++|..+|+|.+||.....+.+..|-..+
T Consensus 18 ~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 18 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999986 37899999999999999999999999888887763
No 14
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=95.06 E-value=0.051 Score=38.79 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..++..++-++.|+|+ .|.++.++|..+|+|.+||...+.+....|-..
T Consensus 36 ~~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp HTSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3578888888888775 689999999999999999999999887777655
No 15
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=95.00 E-value=0.088 Score=38.31 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhcCcccccCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 5 TFGFLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 5 ~F~~L~~~l~~~~~~~~~~~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
....+++.|.+. + .....++..++-.+.| +..|.++.++|..+|+|.+||...+.+...-|-..
T Consensus 17 ~~~~~l~~l~~~----~---~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 17 SVAKLLEKISAG----G---YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp HHHHHHHHHHCC----C---CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHccC----C---cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 445666666554 1 1146799988877666 45899999999999999999999999887777655
No 16
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=94.96 E-value=0.034 Score=42.68 Aligned_cols=44 Identities=2% Similarity=0.072 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
...++.+++..+...+ ..|.+..++|..+|+|.+||++++.+..
T Consensus 4 ~~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 4 GSALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp SCCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred cccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHccc
Confidence 4678888887766654 7899999999999999999999998753
No 17
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=94.92 E-value=0.072 Score=35.92 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
...++..++-.+.+ +..|.++.++|..+|+|.+||+..+.+....+...
T Consensus 9 ~~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 9 KPLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 46788888877777 38899999999999999999999999988777655
No 18
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=94.89 E-value=0.052 Score=40.62 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...++.+.+..+...+ ..|.+..++|..||+|.+||++++.+...
T Consensus 15 ~~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3478898888776655 58999999999999999999999998754
No 19
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=94.88 E-value=0.044 Score=34.88 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 32 VEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 32 ~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
++..-.+... +..|.++.++|..+|+|++||++++.
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4444333333 57899999999999999999999875
No 20
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.76 E-value=0.056 Score=42.15 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...++.+.+..+...+ ..|.+..++|..||+|.+||++++.++...
T Consensus 30 ~~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 30 GRPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3578999988887766 579999999999999999999999987653
No 21
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=94.63 E-value=0.035 Score=40.89 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhcC-------CcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQ-------LSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g-------~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+..+|.+.++.++..++..| .+..++|..||||.+|+++|+...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999888888765 799999999999999999998875
No 22
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=94.46 E-value=0.086 Score=36.76 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..++..++-.+.| + ..|.++.++|..+|+|.+||...+.+....|-..
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5688988888877 3 7899999999999999999999999988877665
No 23
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=94.38 E-value=0.065 Score=40.75 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHH-HHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMR-KIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~-~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+..++.+.++-+.-.+..+|.+.. ++|..||||++|++++++.--..
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhh
Confidence 568999999998887767776665 99999999999999999975543
No 24
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=94.15 E-value=0.071 Score=38.46 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=52.5
Q ss_pred HHHHHHHhhhcCcccc---cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhh-CCChhhHHHHHHHHHHHccc
Q psy4300 7 GFLVEALAAINGYETL---YERGVPFVPVEKKTLVALSYMATQLSMRKIGDQF-NLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 7 ~~L~~~l~~~~~~~~~---~~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~f-gvs~stv~r~v~~~~~~l~~ 76 (307)
+.|.+.+...++.-.. +..+...+...-+++|.|.+--++.|+.++|..| |.+.|||...++++-..+..
T Consensus 4 ~~I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 4 DNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 4455555555432111 1223457888899999999999999999999999 89999999999998887654
No 25
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=93.96 E-value=0.13 Score=36.93 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..++..++-++.|. ..|.++.++|..+|+|.+||...+.+...-|-..
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 56899998888884 8899999999999999999999999998888766
No 26
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=93.85 E-value=0.14 Score=38.21 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
.+|+.++-++.|+|+ .|.++.++|..+|+|.+||.+.+.+....|-..+
T Consensus 22 ~L~~~~r~vl~l~y~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 477888877776665 6899999999999999999999999988887764
No 27
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=93.66 E-value=0.093 Score=33.98 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=31.2
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+..|.++.++|..+|+|.+||...+.+...-+-..
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999887766554
No 28
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=93.54 E-value=0.14 Score=35.03 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 30 VPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+++.++-.+.| + ..|.++.++|..+|+|.+||...+.+...-+-..
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 56667766666 3 7899999999999999999999999988777654
No 29
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=92.89 E-value=0.28 Score=34.81 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
...++..++-.+.|. ..|.++.++|..+|+|.+||...+.+...-+--.
T Consensus 27 ~~~Lt~rE~~Vl~l~--~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 27 QDVLTPRECLILQEV--EKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp --CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 567888888766664 4999999999999999999999999987776554
No 30
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=92.86 E-value=0.14 Score=40.28 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
...++.+.+..+...+ ..|.+..++|..||+|++||++++++.
T Consensus 23 ~~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp SCSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3578898888776655 689999999999999999999999865
No 31
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=92.79 E-value=0.13 Score=37.74 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=25.9
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
.+|..|.+|++++...|+|.+||+|+-+..
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 358999999999999999999999965543
No 32
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=92.70 E-value=0.23 Score=36.97 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
.+|+.++-++.|+| ..|.++.++|..+|+|.+||...+.+....|-..+
T Consensus 25 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47788887777765 46899999999999999999999999988887764
No 33
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=92.70 E-value=0.17 Score=36.99 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhcCccccc---CCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 6 FGFLVEALAAINGYETLY---ERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 6 F~~L~~~l~~~~~~~~~~---~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.+.|.+.+...++.-... ..+...+...-|++|.|.+=-++.|+.++|..||...|||...++++-..+.+-
T Consensus 7 ~~~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~d 81 (101)
T 3pvv_A 7 AATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAER 81 (101)
T ss_dssp HHHHHHHHHHHTTCCHHHHHSSCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHhCCCCCchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Confidence 456666666654332111 122456778889999999988999999999999999999999999998877664
No 34
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=92.62 E-value=0.14 Score=36.32 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..++..++-.+.| +..|.++.++|..+|+|.+||...+.+....|-..
T Consensus 28 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4578888877777 37899999999999999999999999988777665
No 35
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=92.26 E-value=0.096 Score=40.83 Aligned_cols=51 Identities=8% Similarity=0.184 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHH--HhcCCcHHHHHh----hh--CCChhhHHHHHHHHHHHccc
Q psy4300 26 GVPFVPVEKKTLVALSY--MATQLSMRKIGD----QF--NLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 26 ~~~~~~~~~~l~i~L~~--L~~g~~~~~l~~----~f--gvs~stv~r~v~~~~~~l~~ 76 (307)
.+..++.++++.+..++ -..+.+..+||. .| +||+|||+++++.=-..+..
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~~ 66 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDN 66 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTTT
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhhh
Confidence 36889999999999998 345689999999 99 99999999999986555433
No 36
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=92.25 E-value=0.32 Score=39.82 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
...+..+.=.-..+++..|.++.++|..+|||+++|+|.+..
T Consensus 6 ke~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 456676666666677889999999999999999999998875
No 37
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=91.88 E-value=0.25 Score=36.98 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 32 VEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 32 ~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
..++ .-++..|..|.+|++|+...|+|.+||+|+-+.
T Consensus 62 Ls~R-~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 62 LSQR-LQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHH-HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344 455677899999999999999999999995543
No 38
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=91.84 E-value=0.3 Score=40.62 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..+|+.++-++.|+|+ .|.++.++|..+|+|.+||.+.+.+....|-..
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5689999999999886 589999999999999999999999888777655
No 39
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=91.44 E-value=0.27 Score=34.06 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+-.-|..+..|.++.+||...|||++|++.+++.
T Consensus 21 ~~~~kLK~il~GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 21 TVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHcC
Confidence 34445555555999999999999999999988763
No 40
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=91.09 E-value=0.89 Score=34.53 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...+++.+...+...+ .++.+..+||..+|++++|+++.+++...
T Consensus 33 ~~~lt~~~~~iL~~l~-~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 33 EVALTNTQEHILMLLS-EESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp SSCCCHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH-hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467776654444333 34499999999999999999999998764
No 41
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=90.99 E-value=0.33 Score=39.03 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.+|+.++-++.|+|+ .|.|+.++|..+|+|.+||...+.+....|-..
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 467777777777776 589999999999999999999999988877666
No 42
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.68 E-value=0.51 Score=33.88 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=26.7
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+.+..+|+..+|+|++|+++.++.....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567899999999999999999999988654
No 43
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=90.55 E-value=8.4 Score=33.73 Aligned_cols=149 Identities=9% Similarity=-0.041 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHhhhc-Cc-ccccCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 1 MRKTTFGFLVEALAAIN-GY-ETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 1 ms~~~F~~L~~~l~~~~-~~-~~~~~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
++++|+.+.+...+.-. .. ...+.++...++. +++.- +.--....+.+.++..++||.+||.+++++. .+...
T Consensus 41 vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~-~v~~~~~~t~~~ia~~l~vs~~tV~r~L~~~--g~~~k- 115 (345)
T 3hot_A 41 PTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQA-LLDEDDAQTQKQLAEQLEVSQQAVSNRLREM--GKIQK- 115 (345)
T ss_dssp CCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHH-HHHHCSCCCHHHHHHHTTSCHHHHHHHHHHT--TCEEE-
T ss_pred CcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHH-HHHhCccchHHHHHHHHCCCHHHHHHHHHHh--CCeee-
Confidence 46788888887765421 01 1111222344554 33332 2233445789999999999999999999982 22222
Q ss_pred ccccccc-CCChHHHH---HHHHHHHH---hhCCCCcceeecceeEEeecCCCCccccc-----------cccCCcceeE
Q psy4300 79 IQCQYIK-WPTEEESV---IIERNFRA---LAKFPGVIGAIDGCHIEGKFSKDIRNDYN-----------NRKCTQSMIL 140 (307)
Q Consensus 79 ~~~~~i~-~P~~~~~~---~~~~~f~~---~~~~p~~~g~iDgt~i~i~~P~~~~~~y~-----------~~k~~~s~~~ 140 (307)
...... .-+..... ........ ...+++-+-..|-+.+....+... ..|. ...+...+.+
T Consensus 116 -~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~~-~~w~~~g~~~~~~~~~~~~~~~~~v 193 (345)
T 3hot_A 116 -VGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRK-KSYVDPGQPATSTARPNRFGKKTML 193 (345)
T ss_dssp -ECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCCC-EEEECSSSCCCCEECCCTTCCEEEE
T ss_pred -ccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccce-eeeccCCCCCCCCcCccCcCCcEEE
Confidence 222221 11222111 11111111 124667778899998876422111 1111 1112335667
Q ss_pred EeeeCCCcceEeeeec
Q psy4300 141 QGVCTSNKLLTNIHVG 156 (307)
Q Consensus 141 q~v~d~~g~i~~v~~~ 156 (307)
.++.+.+|.+.+....
T Consensus 194 ~~~~~~~g~~~~~~~~ 209 (345)
T 3hot_A 194 CVWWDQSGVIYYELLK 209 (345)
T ss_dssp EEEEESSSEEEEEEEC
T ss_pred EEEEcccCceeeEecC
Confidence 7778888866555553
No 44
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=90.52 E-value=0.48 Score=36.67 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.+|+.++-++. + +-.|.++.++|..+|+|.+||...+.+....|-..
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 57777777766 3 55799999999999999999999999887777665
No 45
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=90.35 E-value=0.2 Score=33.34 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.7
Q ss_pred cHHHHHhhhCCChhhHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+..+||...|||++||+++++.
T Consensus 2 T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999998863
No 46
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=90.32 E-value=0.6 Score=31.02 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 33 ~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+++++-.|.--....+..+||..+|+|++||++.+.....
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555555543223579999999999999999999988765
No 47
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=90.22 E-value=0.73 Score=30.91 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQ-LSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g-~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+..--.++.|..++.-+++| +|....|..|||..||+..-++.-..
T Consensus 10 ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~ 56 (70)
T 2cob_A 10 RYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLG 56 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhhcc
Confidence 44456788999999999999 89999999999999998877765433
No 48
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=89.99 E-value=1.2 Score=32.30 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.5
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+.+..+++..+|+|++|+++.++.....
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKSV 66 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456799999999999999999999998763
No 49
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=89.84 E-value=0.33 Score=33.91 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
-+..++++..|. ..|.+..+||..+|+|+++|.+.+.....
T Consensus 16 ~~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 16 AEIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp HHHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345666665555 56799999999999999999999888744
No 50
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=89.67 E-value=0.5 Score=33.60 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred HHHHHHHHhcC---CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 36 TLVALSYMATQ---LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 36 l~i~L~~L~~g---~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
++..|..-..+ .+..+|+..++++++|+++++++....
T Consensus 17 iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 57 (95)
T 2qvo_A 17 ILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEA 57 (95)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444444445 899999999999999999999988764
No 51
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.61 E-value=0.7 Score=31.72 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhc--CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMAT--QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 33 ~~~l~i~L~~L~~--g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+.+++-+|.-.+. +.+..+||..+|+|++||.+.+.+...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566666665552 579999999999999999999988754
No 52
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=89.53 E-value=0.31 Score=37.71 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCC-ChhhHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNL-ADSTVWSCIDS 69 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgv-s~stv~r~v~~ 69 (307)
.+.++. +..--.+.+++.|.+.+.++..+|| |++|+++++++
T Consensus 10 Ptk~t~-e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 10 PSDYMP-EVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp CCSCCT-THHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CCCCCH-HHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 344444 3444577788999999999999999 99999999987
No 53
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=89.28 E-value=2.1 Score=32.26 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHhhhcCcccccCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhhC--CChhhHHHHHHHH
Q psy4300 1 MRKTTFGFLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFN--LADSTVWSCIDSF 70 (307)
Q Consensus 1 ms~~~F~~L~~~l~~~~~~~~~~~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fg--vs~stv~r~v~~~ 70 (307)
++++|+.+.+...... +.... .+..+.++.++...+.-.......+...|+..+| +|.+||++++++.
T Consensus 34 is~~Tv~r~~~~~~~~-g~~~~-~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 34 RSRHCIRVYLKDPVSY-GTSKR-APRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CCHHHHHHHHHSGGGT-TCCCC-CCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred cCHHHHHHHHHccccc-CCcCC-CCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 3566766666655433 11111 2334567776654443333344589999999999 8999999999863
No 54
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=88.97 E-value=0.5 Score=33.82 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-hcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 34 KKTLVALSYM-ATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 34 ~~l~i~L~~L-~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
++.-..+.+| ..+.+..++|..+|||.+||+|.++.
T Consensus 7 ~R~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 7 ERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3333344444 44689999999999999999999875
No 55
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=88.93 E-value=0.98 Score=36.75 Aligned_cols=65 Identities=8% Similarity=0.106 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhc-------CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMAT-------QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEESVII 95 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~-------g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~~~~ 95 (307)
..+++++++-+|..+.. ..+..++|...|+|+.|++|+++++... +... ....|.-.+.+.++.+
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d~~~L~~~ 217 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKL--SRGKITILDSKRLETL 217 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEESCHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--CCCEEEEeCHHHHHHH
Confidence 46799999999998865 6789999999999999999999998654 3333 4555555565555443
No 56
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=88.91 E-value=0.87 Score=34.55 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...+++.+...+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 32 ~~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 78 (143)
T 3oop_A 32 SYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp TSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 34677766655554444578899999999999999999999987653
No 57
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=88.66 E-value=0.35 Score=36.46 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+++..++++++|+++.+++....
T Consensus 29 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 29 YDISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp GTCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 3577655544444344556899999999999999999999988764
No 58
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=88.61 E-value=0.54 Score=30.79 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=23.2
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.....| ++..+|...|+|+++++++++
T Consensus 9 ~~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 9 YLEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 344567 999999999999999999984
No 59
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=88.56 E-value=0.78 Score=37.23 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhcC--CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQ--LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g--~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+++|..++=.-.+..|.+| .++.++|..+|+|++.|+|+++-
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 57899999999999999887 89999999999999999999984
No 60
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=88.21 E-value=0.56 Score=31.15 Aligned_cols=29 Identities=7% Similarity=0.109 Sum_probs=23.0
Q ss_pred HHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 40 LSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 40 L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
|..+....++..+|..+|||+++||++++
T Consensus 7 Lk~l~~~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 7 LKKFVEDKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp HHHHHTTSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHH
Confidence 33333344999999999999999999874
No 61
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=88.20 E-value=0.66 Score=32.98 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=26.5
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+.+..+|+..+|+|++|+++.++.....
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567899999999999999999999887654
No 62
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=88.12 E-value=1.3 Score=31.60 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCHHH-HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 30 VPVEK-KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 30 ~~~~~-~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
++..+ +++..| .-..+.+..+|+..+|++++|+++.++.....
T Consensus 18 l~~~~~~il~~l-~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 18 FKPSDVRIYSLL-LERGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCHHHHHHHHHH-HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH-HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34433 344444 33467899999999999999999999998765
No 63
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=88.08 E-value=1.3 Score=32.15 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
+......++.++.....++.|+.+.+..|+||.+++.+|...+-..-.+.|
T Consensus 32 rRWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~~G~~aL 82 (101)
T 2oa4_A 32 RRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDAL 82 (101)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHh
Confidence 456666899999999999999999999999999999999998876666664
No 64
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.05 E-value=1.2 Score=30.85 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 33 ~~~l~i~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+++++-.|.-.+ ...+..+||..+|+|++||.+.+.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455555555443 2478999999999999999998888754
No 65
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=87.98 E-value=1.4 Score=33.37 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+++.+-..+...+-..+.+..+|+..++++++|+++.+++...
T Consensus 27 ~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467777655555555566799999999999999999999998765
No 66
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=87.84 E-value=0.58 Score=36.90 Aligned_cols=46 Identities=4% Similarity=-0.018 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYM-ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L-~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...++..+-.++...+- ..+.+..+|+..++++++|+++.+++...
T Consensus 48 ~~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 48 PLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 34677766443333332 45689999999999999999999998765
No 67
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=87.75 E-value=1.2 Score=31.73 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...++..+.+.+.+.+-+ .|.+.++|+...+++++|+.+++++...
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456777777766666653 3899999999999999999999988754
No 68
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.65 E-value=0.86 Score=34.20 Aligned_cols=46 Identities=4% Similarity=0.018 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+...+...+-..+.+..+++..+|++++|+++.+++....
T Consensus 25 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 25 LNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp GTCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3566655544444444567899999999999999999999987653
No 69
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=87.48 E-value=1.1 Score=33.91 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH---hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 33 EKKTLVALSYM---ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 33 ~~~l~i~L~~L---~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...++..|+.+ ..+.+..++|..+|++++|+++.+++....
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 34555566665 345799999999999999999999988664
No 70
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=87.48 E-value=0.98 Score=33.92 Aligned_cols=46 Identities=4% Similarity=0.028 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+++..+|++++|+++.+++....
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp TTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 4577766544444444567899999999999999999999998765
No 71
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=87.45 E-value=1.1 Score=36.96 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhc--------CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMAT--------QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~--------g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
....+++++++-+|..++. ..+..+||...|+++.|++|+++++..
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~ 212 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQD 212 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4567899999999988753 258999999999999999999998753
No 72
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=87.31 E-value=1.4 Score=30.31 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHhhhcCcccccCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 1 MRKTTFGFLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 1 ms~~~F~~L~~~l~~~~~~~~~~~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
|+++....|++.|+..+. ... +...+.++||..||+|.+||.+.+.....
T Consensus 1 ~~~~r~~~IL~~I~~~i~---~~~-------------------g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQN---MDD-------------------GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp CCCTHHHHHHHHHHHHHH---HHT-------------------TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---hcc-------------------CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667777777777766521 000 12357899999999999999888877654
No 73
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=87.27 E-value=1.1 Score=34.18 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 38 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 4577755444433333557899999999999999999999988764
No 74
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=87.27 E-value=0.63 Score=32.92 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=24.8
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+.+..+|+..+|+|++|+++.++....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 589999999999999999999998865
No 75
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=87.12 E-value=1.3 Score=33.55 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+-..+...+-..+.+..+||..+|++++|+++.+++....
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 5677777655555555568999999999999999999999987663
No 76
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=86.95 E-value=1.3 Score=33.25 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMATQ-LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 33 ~~~l~i~L~~L~~g-~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+.+++..|..-... .+..+|+..+++|+|||+|.+..+...
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444444433323 699999999999999999999998764
No 77
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=86.89 E-value=0.44 Score=37.26 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
..+|+.++-++.|.|+. |.++.++|..+|+|.+||...+.+....|-..+
T Consensus 92 ~~Lp~~~r~vl~L~~~~-g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAME-GFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTTSSS-CCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56888888888776654 799999999999999999999999988888875
No 78
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=86.60 E-value=1.6 Score=32.71 Aligned_cols=45 Identities=4% Similarity=-0.022 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+...+...+-..+.+..+++..+|++++|+++.+++....
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 677766544444444457899999999999999999999998764
No 79
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=86.51 E-value=0.4 Score=38.21 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.+|+.++-++.|+|+ .|.++.++|..+|+|.+||...+.+....|-..
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 477778888877776 579999999999999999999999887766543
No 80
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=86.46 E-value=0.7 Score=34.85 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+-..+...+-. .+.+..+||..++++++|+++.+++....
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 34666554433333333 37899999999999999999999988663
No 81
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=86.31 E-value=1.4 Score=33.32 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+ ..+.+..+|+..+|++++|+++.+++....
T Consensus 33 ~~l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TTCCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 457775554444444 778999999999999999999999987654
No 82
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=86.21 E-value=0.27 Score=32.93 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=19.7
Q ss_pred CcHHHHHhhhCCChhhHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+..+||...|||++||+++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5789999999999999999764
No 83
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.17 E-value=1.2 Score=34.31 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 40 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 40 SDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp HHSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3466655444433333457899999999999999999999988764
No 84
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=86.01 E-value=1.6 Score=33.12 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+++.+-..+...+-..+.+..+||..++++++|+++.+++....
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 677766655555455558999999999999999999999988765
No 85
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.97 E-value=1.5 Score=32.98 Aligned_cols=45 Identities=2% Similarity=0.040 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+...+...+-..+.+..+++..++++++|+++.+++....
T Consensus 33 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 466665544444444557899999999999999999999998764
No 86
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=85.79 E-value=1.7 Score=31.97 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=26.2
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.+.+..+++..+|+|++|+++.++....
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4789999999999999999999999877
No 87
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.77 E-value=1.8 Score=29.56 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=24.9
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...+..+||..+|+|++|+++.++.....
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35789999999999999999998887543
No 88
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=85.76 E-value=1.4 Score=33.79 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...++..+...+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 42 ~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 42 ALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp TTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 34677766554444444567899999999999999999999887553
No 89
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=85.75 E-value=1.5 Score=33.27 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=32.4
Q ss_pred CCHH-HHHHHHHHHH-hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 30 VPVE-KKTLVALSYM-ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 30 ~~~~-~~l~i~L~~L-~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
++.. .+++..| ++ ..+.+..+|+..+|+++||+++.++....
T Consensus 24 l~~~~~~il~~L-~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 24 LNKSVGAVYAIL-YLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp CCHHHHHHHHHH-HHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHH-HHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5554 4455555 54 46789999999999999999999988754
No 90
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.70 E-value=2.1 Score=32.06 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhc--CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMAT--QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~--g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-.. +.+..+|+..++++++|+++.+++....
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 356765544333333333 6899999999999999999999988764
No 91
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=85.65 E-value=0.73 Score=35.25 Aligned_cols=46 Identities=7% Similarity=0.153 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+-..+...+-. .+.+..+||..++++++|+++.+++....
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 45777654444433334 68999999999999999999999987664
No 92
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.60 E-value=1.9 Score=32.58 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+...+...+-..+.+..+++..++++++|+++.+++....
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 466655444443334567899999999999999999999987764
No 93
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=85.58 E-value=1.4 Score=33.37 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...++..+...+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 35 ~~~l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 35 KLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp TTCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 34577765544433333457899999999999999999999887654
No 94
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=85.38 E-value=1.9 Score=33.52 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+++.+-.++...+-..+.+..+||..+|++++|+++.+++...
T Consensus 42 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457776655555444456799999999999999999999998765
No 95
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=85.21 E-value=1.4 Score=35.53 Aligned_cols=42 Identities=5% Similarity=-0.087 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+..+++-++...+...+..|.+...+|..+|+|+++|++++.
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 578999999999899999999999999999999999998765
No 96
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=85.16 E-value=1.9 Score=32.31 Aligned_cols=45 Identities=4% Similarity=0.109 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+...+...+-..+.+..+++..+++|++|+++.+++....
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 466655443333333457899999999999999999999887653
No 97
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=85.04 E-value=1.8 Score=32.90 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=26.3
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+.+..+||..+|+|++|+++.+++....
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~ 49 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKD 49 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 356899999999999999999999987653
No 98
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=84.95 E-value=1.3 Score=40.94 Aligned_cols=48 Identities=8% Similarity=0.179 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHH-h--cCCcHHHHHhhhCCChhhHHHHHHHHHHHcc
Q psy4300 28 PFVPVEKKTLVALSYM-A--TQLSMRKIGDQFNLADSTVWSCIDSFLTAMS 75 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L-~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~ 75 (307)
..++..++-.+.|+|. . .+.++.+||..+|||+.+|..+..+.+.-|-
T Consensus 374 ~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 374 SKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred HhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3588888899999884 3 6799999999999999999999999888776
No 99
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=84.84 E-value=2.5 Score=33.92 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhc-------------CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHHHH
Q psy4300 29 FVPVEKKTLVALSYMAT-------------QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEESVI 94 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~-------------g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~~~ 94 (307)
..+++++|+-+|..|+. ..+..+||...|+|+.|++|+++++... +... ....|...+.+.+..
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d~~~L~~ 193 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRS--GYGKIQLLDLKGLKE 193 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEESCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--CCCEEEEeCHHHHHH
Confidence 46799999999998853 2688999999999999999999998754 4443 555666666555443
No 100
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=84.81 E-value=1.4 Score=35.44 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhc-------------CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMAT-------------QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~-------------g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+++++++-+|..++. ..+..++|...|+|+.|++|+++++..
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46799999999998854 257899999999999999999998754
No 101
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=84.61 E-value=1.4 Score=33.04 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+-..+...+-. .+.+..+|+..++++++|+++.+++....
T Consensus 33 ~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45777655444433334 56899999999999999999999987653
No 102
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=84.50 E-value=1.7 Score=33.60 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+|+..+|++++|+++.+++....
T Consensus 48 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 48 LGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp HTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 3467665544444444557899999999999999999999987654
No 103
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=84.42 E-value=1.6 Score=33.83 Aligned_cols=44 Identities=9% Similarity=0.167 Sum_probs=32.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEK-KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~-~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.+++.+ .++..|.....+.+..+||..++++++|+++++++...
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 466655 33444444455678899999999999999999988754
No 104
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.40 E-value=1.8 Score=33.07 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+++.+-..+...+-..+.+..+|+..++++++|+++.+++...
T Consensus 37 ~~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TTCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457776655544444457789999999999999999999988754
No 105
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=84.29 E-value=1.1 Score=31.65 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHh-c--CCcHHHHHhhhCCChhh-HHHHHHHHHHH
Q psy4300 32 VEKKTLVALSYMA-T--QLSMRKIGDQFNLADST-VWSCIDSFLTA 73 (307)
Q Consensus 32 ~~~~l~i~L~~L~-~--g~~~~~l~~~fgvs~st-v~r~v~~~~~~ 73 (307)
...+.+.+|..+. + +.+..+|+..++++++| +++.+++....
T Consensus 13 ~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 13 HLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 4444555555553 2 58999999999999999 99999998765
No 106
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=84.22 E-value=4.2 Score=33.80 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
...++..++-.+.| +..|.++.++|...|+|.+||...+.+...-|-..
T Consensus 171 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 171 AAWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 45799988877655 57999999999999999999999999887776554
No 107
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=84.12 E-value=3.5 Score=32.80 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHhc-------------CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHHH
Q psy4300 28 PFVPVEKKTLVALSYMAT-------------QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEESV 93 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~-------------g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~~ 93 (307)
...+++++|+-+|..|.. ..+..++|...|+|+.|++|+++++... +... ....|...+.+.+.
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d~~~L~ 185 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIAT--AYRRVYLLDLAALE 185 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE--ETTEEEECCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--cCCEEEEeCHHHHH
Confidence 457899999999998753 2578999999999999999999998743 4444 44556666655444
Q ss_pred H
Q psy4300 94 I 94 (307)
Q Consensus 94 ~ 94 (307)
.
T Consensus 186 ~ 186 (195)
T 3b02_A 186 R 186 (195)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.11 E-value=1.4 Score=33.25 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=33.0
Q ss_pred CCCHHH-HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEK-KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~-~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+++.+ .++..|..-..+.+..+|+..+|++++|+++.+++....
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 355443 344444244557899999999999999999999988764
No 109
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=84.11 E-value=2 Score=36.52 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..+|..++-++.|. ..|.++.++|...|+|.+||...+.+....|-..
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 57999999999996 4999999999999999999999999988877665
No 110
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=84.05 E-value=1.3 Score=36.20 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHhc--------------CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccc-cccccCCChHHH
Q psy4300 29 FVPVEKKTLVALSYMAT--------------QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQ-CQYIKWPTEEES 92 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~--------------g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~-~~~i~~P~~~~~ 92 (307)
..+++++++-+|..+.. ..+..++|...|+|+.|++|+++++... +... . ...|...+.+.+
T Consensus 136 ~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~~~~~i~i~d~~~L 213 (220)
T 2fmy_A 136 FKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILER--VNQRTLLLKDLQKL 213 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--SSSSEEEESCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE--cCCCEEEEcCHHHH
Confidence 45789999999988753 4789999999999999999999998643 3333 3 445555555444
Q ss_pred H
Q psy4300 93 V 93 (307)
Q Consensus 93 ~ 93 (307)
.
T Consensus 214 ~ 214 (220)
T 2fmy_A 214 K 214 (220)
T ss_dssp H
T ss_pred H
Confidence 3
No 111
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=83.99 E-value=2.3 Score=32.80 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+...+...+-..+.+..+|+..+|++++|+++.+++....
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 466655443333333567999999999999999999999987654
No 112
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=83.91 E-value=1.5 Score=31.90 Aligned_cols=39 Identities=8% Similarity=0.155 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 33 ~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++..| -..+.+..+|+..+|+|++|+++.++.....
T Consensus 23 r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~~ 61 (114)
T 2oqg_A 23 RWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQAC 61 (114)
T ss_dssp HHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444444 3456899999999999999999999998654
No 113
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=83.87 E-value=1.9 Score=33.86 Aligned_cols=42 Identities=7% Similarity=0.187 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhc--------CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMAT--------QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~--------g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.++.+.+..+.+.-... |.+..++|...|||++|+++|.+.
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 457888888876543322 789999999999999999999983
No 114
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=83.83 E-value=2 Score=32.90 Aligned_cols=44 Identities=9% Similarity=0.305 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.+++.+...+...+-..+.+..+|+..++++++|+++.+++...
T Consensus 38 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46775544443333345689999999999999999999988765
No 115
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=83.77 E-value=1.1 Score=29.99 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=24.2
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+-..|.++.++|...|||++|+++|-+
T Consensus 19 ~R~~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 19 VRKKLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3456799999999999999999998754
No 116
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=83.73 E-value=1.8 Score=34.70 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhc-------------CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMAT-------------QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~-------------g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+++++++-+|..|.. ..+..+||...|+|+.|++|+++++..
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46799999999988754 258899999999999999999998764
No 117
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=83.71 E-value=2.4 Score=27.16 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHHHHHHHHh--cCCcHHHHHhhh-----CCChhhHHHHHHH
Q psy4300 34 KKTLVALSYMA--TQLSMRKIGDQF-----NLADSTVWSCIDS 69 (307)
Q Consensus 34 ~~l~i~L~~L~--~g~~~~~l~~~f-----gvs~stv~r~v~~ 69 (307)
++..+.+..+. ...+..+|+..+ +||.+||+|.+++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 44444444443 347889999999 9999999999983
No 118
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.62 E-value=1.7 Score=33.20 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp TTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4577766544444444557899999999999999999999987654
No 119
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=83.62 E-value=2 Score=32.67 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+...+...+-..+.+..+|+..+|++++|+++.+++....
T Consensus 36 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3567665544444444557899999999999999999999987654
No 120
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.49 E-value=2.2 Score=32.32 Aligned_cols=45 Identities=4% Similarity=0.021 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHH-hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYM-ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L-~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+-..+...+- ..+.+..+|+..+|++++|+++.+++....
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 455544333322233 457899999999999999999999988764
No 121
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=83.32 E-value=1.8 Score=34.96 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHhc-------CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMAT-------QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEESVIIE 96 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~-------g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~~~~~ 96 (307)
.+++++++-+|..+.. ..+..++|...|+++.|++|+++++... +... ....|...+.+.++.++
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL--GPGTVEVREAALLEEIA 212 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--cCCEEEEeCHHHHHHHh
Confidence 4688999999987742 2589999999999999999999998654 3333 55556666665554443
No 122
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=83.28 E-value=1.4 Score=33.21 Aligned_cols=45 Identities=9% Similarity=0.044 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+...+...+-..+.+..+++..++++++|+++.+++....
T Consensus 26 ~lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 455544433333333456899999999999999999999887653
No 123
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=83.25 E-value=1.4 Score=31.29 Aligned_cols=33 Identities=6% Similarity=0.272 Sum_probs=27.9
Q ss_pred cCCcHHHH----HhhhCCChhhHHHHHHHHHH-Hcccc
Q psy4300 45 TQLSMRKI----GDQFNLADSTVWSCIDSFLT-AMSQP 77 (307)
Q Consensus 45 ~g~~~~~l----~~~fgvs~stv~r~v~~~~~-~l~~~ 77 (307)
.+.+..+| +..++++++|+++.+++... -+...
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEE
Confidence 46889999 89999999999999999888 44443
No 124
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=83.24 E-value=0.96 Score=29.04 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=23.4
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+-..|.++.++|...|+|++|++++.+
T Consensus 10 r~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 10 REKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345789999999999999999998765
No 125
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=83.20 E-value=0.43 Score=31.09 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.6
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCI 67 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v 67 (307)
..+.++.++|..+|||++||+++.
T Consensus 8 ~~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 8 DHFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HHcCCHHHHHHHhCCCHHHHHHHH
Confidence 344589999999999999999974
No 126
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=83.17 E-value=2.1 Score=34.93 Aligned_cols=45 Identities=9% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhcC-------------CcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQ-------------LSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g-------------~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...+++++++-+|..+... .+..++|...|+++.|++|+++++..
T Consensus 156 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 156 AFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3468999999999988542 47899999999999999999998754
No 127
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=83.10 E-value=2.9 Score=34.88 Aligned_cols=49 Identities=6% Similarity=0.030 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
...++..++-.+.| +..|.++.++|...|+|.+||...+.+...-|-..
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 35699988877655 57999999999999999999999999887766554
No 128
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=83.05 E-value=2.2 Score=35.09 Aligned_cols=67 Identities=4% Similarity=-0.092 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHhc----------CCcHHHHHhhhCCChhhHHHHHHHHHHHccccccccccccCCChHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMAT----------QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQIQCQYIKWPTEEESVII 95 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~----------g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l~~~~~i~~P~~~~~~~~ 95 (307)
....+++++++-+|..+.. ..+..++|...|+++.|++|+++++...=... ....|.-.+.+.+..+
T Consensus 149 l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~~--~~~~i~I~d~~~L~~~ 225 (237)
T 3fx3_A 149 LKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTV--KRNHAEIEDIALLRDY 225 (237)
T ss_dssp CCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEEC--CTTEEEESCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEe--eCCEEEEcCHHHHHHH
Confidence 3568899999999999853 24588999999999999999999876554433 5555665555544433
No 129
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=83.02 E-value=2.8 Score=32.03 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.4
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...++.+||..+|+|++|+++.+++..+.
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999887653
No 130
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=82.88 E-value=1.8 Score=31.41 Aligned_cols=30 Identities=3% Similarity=0.058 Sum_probs=25.8
Q ss_pred hcCCcHHHHHhhh-CCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQF-NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~f-gvs~stv~r~v~~~~~~ 73 (307)
..+.++.+|+..+ |+|++|+++.+++....
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3458999999999 99999999999987654
No 131
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=82.87 E-value=1.8 Score=32.67 Aligned_cols=45 Identities=9% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+...+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 466655444333333456899999999999999999999987664
No 132
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=82.86 E-value=2.3 Score=32.44 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+++.+-..+... -..+.+..+||..++++++|+++.+++....
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~ 78 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNA 78 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4666555444444 6678999999999999999999999987643
No 133
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=82.85 E-value=0.24 Score=41.17 Aligned_cols=45 Identities=9% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+|+.++-++.|+|+ .|.++.++|..+|+|.+||.+.+.+....
T Consensus 197 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 197 EELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ----------------------------------------------
T ss_pred HhCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5688888888888886 57999999999999999999888776543
No 134
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=82.81 E-value=3.4 Score=31.82 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
++..+.-.+.+..-....++.+||..+|+|++|+++.+++....
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44544433332222345899999999999999999999988654
No 135
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=82.62 E-value=2.9 Score=32.14 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.9
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...++.+||..+|+|++|+++.+++...
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999999888754
No 136
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=82.61 E-value=2.3 Score=33.27 Aligned_cols=46 Identities=7% Similarity=0.123 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+|+..+|++++|+++.+++....
T Consensus 41 ~~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 41 ENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SSCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3577765544444444557999999999999999999999987654
No 137
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=82.61 E-value=2 Score=35.81 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhc--------------CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMAT--------------QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~--------------g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+++++|+-+|..++. ..+..+||...|+|+.|++|+++++..
T Consensus 162 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 162 HRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp CSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 46799999999988742 368899999999999999999998765
No 138
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.59 E-value=0.74 Score=35.75 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.++..+-..+...+-..+.+..+||..++++++|+++.+++...
T Consensus 47 ~lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp TCCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45554433333333346789999999999999999999998765
No 139
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=82.44 E-value=2.2 Score=29.33 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=23.4
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...+..+|+..|+||.+||.+-++.+..
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3478999999999999998887776644
No 140
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=82.44 E-value=1.3 Score=32.97 Aligned_cols=34 Identities=6% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 40 LSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 40 L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
|..|. .+.+..+|+..+|+|++|+++.++.....
T Consensus 48 L~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 48 TYALCQDEELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444 45799999999999999999999988653
No 141
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=82.34 E-value=1.4 Score=29.93 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.4
Q ss_pred hcCCcHHHHHhhhCCChhhHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSC 66 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~ 66 (307)
..|.+..+||...|+|++|++++
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 77999999999999999999975
No 142
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=82.18 E-value=1.4 Score=28.78 Aligned_cols=27 Identities=4% Similarity=0.110 Sum_probs=23.4
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...|.++.++|...|+|+++++++.+
T Consensus 12 r~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 12 RIALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345689999999999999999998765
No 143
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=82.10 E-value=2.1 Score=37.64 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 36 TLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 36 l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.-+...|+..+.+..+||..||||++||+|-+....+
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455556778899999999999999999999997654
No 144
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=82.09 E-value=3.5 Score=33.61 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHh--------------cCCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHHH
Q psy4300 29 FVPVEKKTLVALSYMA--------------TQLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEESV 93 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~--------------~g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~~ 93 (307)
..+++++++-+|..++ ...+..++|...|+|+.|++|+++++... +... ....|...+.+.+.
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~~~~i~i~d~~~L~ 223 (227)
T 3d0s_A 146 FTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRL--EGKSVLISDSERLA 223 (227)
T ss_dssp HSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTEEEESCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe--cCCEEEEcCHHHHH
Confidence 4679999999998874 13689999999999999999999998753 3333 44555555554444
No 145
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=81.91 E-value=1.4 Score=28.49 Aligned_cols=27 Identities=4% Similarity=0.099 Sum_probs=23.4
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...|.++.++|...|+|+++++++.+
T Consensus 10 r~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345789999999999999999999765
No 146
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=81.88 E-value=2.2 Score=33.03 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+++.+-..+...+-..+.+..+|+..+|++++|+++.+++....
T Consensus 50 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~ 94 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDE 94 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 466655544444444558999999999999999999999987653
No 147
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=81.83 E-value=1.4 Score=30.24 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=23.2
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
-..|.++.++|...|+|+++++++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 46689999999999999999999775
No 148
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=81.75 E-value=3.5 Score=31.75 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
++..+.-.+.+..-....++.+||..+|+|++|+++.+++..+.
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 44444333332222345899999999999999999999988664
No 149
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=81.67 E-value=2.7 Score=28.66 Aligned_cols=43 Identities=2% Similarity=0.118 Sum_probs=31.8
Q ss_pred CCCHHH-HHHHHHHHHhcCCcHHHHHhhhC----CChhhHHHHHHHHHH
Q psy4300 29 FVPVEK-KTLVALSYMATQLSMRKIGDQFN----LADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~-~l~i~L~~L~~g~~~~~l~~~fg----vs~stv~r~v~~~~~ 72 (307)
.++..+ .++.+|+. ..+.+..+|+..++ ++.+||++.+++...
T Consensus 6 ~lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 6 QISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp CCCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 456644 44444544 55789999999996 799999999988754
No 150
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=81.67 E-value=2.6 Score=31.92 Aligned_cols=29 Identities=7% Similarity=0.283 Sum_probs=25.4
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...++.+||..+|+|++|+++.+++....
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34799999999999999999999987654
No 151
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=81.66 E-value=1.2 Score=32.33 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 32 VEKKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 32 ~~~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
..+.+.-.|..+ ..|.++.++|...|||++|++++=+
T Consensus 33 l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 33 LAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 456677666655 6799999999999999999998743
No 152
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=81.58 E-value=1.4 Score=29.81 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=24.3
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+...|.++.++|...|||+++++++.+
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4567799999999999999999998754
No 153
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=81.58 E-value=1.2 Score=30.07 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=20.0
Q ss_pred cHHHHHhhhCCChhhHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+...||..+|||++||++|++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 4889999999999999999864
No 154
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=81.55 E-value=3.4 Score=31.73 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
++..++-.+.+..-....++.+||..+|+|++|+++.+++....
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44544433333233345899999999999999999999987654
No 155
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=81.26 E-value=1.6 Score=29.50 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=22.2
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
..| ++.++|...|||++|++++.+.
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 447 9999999999999999998774
No 156
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=81.21 E-value=1.9 Score=30.75 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=26.1
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
....+..+|+..+|+|++|+++.++....+
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 34 EGEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp TCCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345799999999999999999999988664
No 157
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.20 E-value=1.8 Score=31.52 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=26.3
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+.+..+|+..+|+|++|+++.++....+
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345799999999999999999999988764
No 158
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=81.18 E-value=0.84 Score=30.35 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=20.1
Q ss_pred cHHHHHhhhCCChhhHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~ 68 (307)
++..+|..+||++++||++++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999985
No 159
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=81.04 E-value=3.5 Score=28.12 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+.-.|..++...++.++|...|||+++++++-+
T Consensus 16 ~~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 4666777787777999999999999999998765
No 160
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=80.98 E-value=2.1 Score=32.61 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHH-HHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVA-LSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~-L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..++..+-..+. |..-..+.+..+|+..++++++|+++.+++...
T Consensus 35 ~glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 35 TGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp GTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 346665543333 222233569999999999999999999998764
No 161
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=80.82 E-value=1.4 Score=29.19 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=31.8
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccccccccccCCChHHHHHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQIQCQYIKWPTEEESVIIERNF 99 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l~~~~~i~~P~~~~~~~~~~~f 99 (307)
-..|.++.++|...|+|++|++++.+. . .-|+.+.+..+++.|
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~g-----------~---~~~~~~~l~~ia~~l 60 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCTN-----------D---VQPSLETLFDIAEAL 60 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHTT-----------S---SCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC-----------C---CCCCHHHHHHHHHHH
Confidence 356899999999999999999997652 1 225655566666655
No 162
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=80.81 E-value=2.8 Score=31.64 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+++.+-..+...+ .++.+..+|+..+|++++|+++.+++....
T Consensus 34 ~lt~~~~~iL~~l~-~~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 34 NLSYLDFSILKATS-EEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp SCCHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 46665533332222 233399999999999999999999998764
No 163
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=80.80 E-value=1.6 Score=29.04 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=26.4
Q ss_pred HHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 35 KTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 35 ~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 10 KFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 344444443 5689999999999999999999765
No 164
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.73 E-value=0.85 Score=34.58 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+-..+...+-..+.+..+|+..++++++|+++.+++....
T Consensus 32 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp GTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 3567666433333222456899999999999999999999987653
No 165
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=80.69 E-value=2.7 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.2
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+.+..+++..+|+|++|+++.++.....
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998764
No 166
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=80.68 E-value=1.7 Score=30.01 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=27.6
Q ss_pred HHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 34 KKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 34 ~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
..+.-.|..+ ..|.++.++|...|+|+++++++-+
T Consensus 13 ~~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 13 VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 3455555544 5799999999999999999998754
No 167
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=80.68 E-value=1.5 Score=36.68 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHhc--------------CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHH
Q psy4300 28 PFVPVEKKTLVALSYMAT--------------QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEES 92 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~--------------g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~ 92 (307)
...+++++|+-+|..++. ..+..++|...|+|+.|++|+++++... +... ....|...+.+.+
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d~~~L 222 (250)
T 3e6c_C 145 NTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDK--KKNKIIVYNLGEL 222 (250)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CSSEEEESCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe--CCCEEEEecHHHH
Confidence 457899999999988742 3589999999999999999999998764 4444 4445555555444
Q ss_pred HHH
Q psy4300 93 VII 95 (307)
Q Consensus 93 ~~~ 95 (307)
..+
T Consensus 223 ~~~ 225 (250)
T 3e6c_C 223 KHL 225 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 168
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=80.61 E-value=3.7 Score=32.03 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+.-.+.+..-....++.+||..+|+|++|+++.+++....
T Consensus 7 ~ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 7 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 355555433333222345899999999999999999999988654
No 169
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=80.56 E-value=1.6 Score=40.24 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHH-h--cCCcHHHHHhhhCCChhhHHHHHHHHHHHcc
Q psy4300 29 FVPVEKKTLVALSYM-A--TQLSMRKIGDQFNLADSTVWSCIDSFLTAMS 75 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L-~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~ 75 (307)
.++..++-.+.|+|. . .+.++.+||..+|||+.+|..+..+...-|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 578888888999884 3 5789999999999999999999998887776
No 170
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=80.50 E-value=2.4 Score=32.48 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+...+...+-..+.+..+|+..+|++++|+++.+++....
T Consensus 39 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp TTCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3567665544333333446899999999999999999999987654
No 171
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=80.43 E-value=2.8 Score=31.28 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=28.3
Q ss_pred HHHHhc-CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 40 LSYMAT-QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 40 L~~L~~-g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
|..|.. +.+..+++..+|+|++|+++.++....+
T Consensus 52 L~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~~ 86 (122)
T 1r1t_A 52 LSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNL 86 (122)
T ss_dssp HHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 334444 5799999999999999999999998774
No 172
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=80.38 E-value=3.1 Score=30.52 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=33.8
Q ss_pred CCCHHHH-HHHHHHHHhcCCcHHHHHhhhC----CChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKK-TLVALSYMATQLSMRKIGDQFN----LADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~-l~i~L~~L~~g~~~~~l~~~fg----vs~stv~r~v~~~~~~ 73 (307)
.++..+. ++.+|+. ..+.+..+|+..++ ++++|+++++++....
T Consensus 7 ~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~ 55 (123)
T 1okr_A 7 EISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK 55 (123)
T ss_dssp CCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC
Confidence 4666544 4444544 66899999999999 8899999999987763
No 173
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=80.36 E-value=2 Score=29.41 Aligned_cols=27 Identities=4% Similarity=0.162 Sum_probs=23.8
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
...|.++.++|...|+|+++++++.+.
T Consensus 22 ~~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 22 QQNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 356899999999999999999998763
No 174
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=80.30 E-value=1.4 Score=31.28 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=27.4
Q ss_pred HHHhc-CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 41 SYMAT-QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 41 ~~L~~-g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..|.. +.+..+|+..+|+|++|+++.++...++
T Consensus 30 ~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 30 CMLHNQELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp HHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444 5699999999999999999999988664
No 175
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=80.30 E-value=3.4 Score=34.53 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
...+++.++-.+.| ++.|.+..++|...|+|..||...+.+...-+-..
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 46799988866655 68999999999999999999999999887766544
No 176
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=80.23 E-value=3.1 Score=30.09 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+..+||..+|+|++||++.+......
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5799999999999999999999987654
No 177
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=80.16 E-value=2.7 Score=33.58 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.++.+++. + ..++..|.+...+|..+|+|.+|+++++.
T Consensus 143 ~~~~~~~~---i-~~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 143 KRKIDRDA---V-LNMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp CCCSCHHH---H-HHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHH---H-HHHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 44555542 2 34557899999999999999999999875
No 178
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=80.04 E-value=1.6 Score=28.17 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=22.6
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
-..|.++.++|...|+|+++++++.+
T Consensus 15 ~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 34688999999999999999998764
No 179
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=79.99 E-value=2 Score=35.01 Aligned_cols=45 Identities=11% Similarity=0.229 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhc--------------CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMAT--------------QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~--------------g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++++|+-+|..+.. ..+..++|...|+|+.|++|+++++...
T Consensus 132 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp THHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45789999999988862 2688999999999999999999998643
No 180
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=79.96 E-value=1.2 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.6
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
..|.++.++|...|||++|++++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4689999999999999999998765
No 181
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=79.94 E-value=2.4 Score=34.54 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhc-----------CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMAT-----------QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~-----------g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+++++++-+|..+.. ..+..++|...|+|+.|++|+++++...
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4678999988877653 2578999999999999999999987654
No 182
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=79.67 E-value=2.5 Score=32.61 Aligned_cols=38 Identities=5% Similarity=0.056 Sum_probs=29.8
Q ss_pred HHHHh-cCCcHHHHHhhhCCChhhHHHHHHHHHHH-cccc
Q psy4300 40 LSYMA-TQLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQP 77 (307)
Q Consensus 40 L~~L~-~g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~ 77 (307)
|+.|. ...++.+|+...|+|++|+++.+++.... +...
T Consensus 30 L~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r 69 (146)
T 2f2e_A 30 VRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVA 69 (146)
T ss_dssp HHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 34443 45899999999999999999999998764 4433
No 183
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=79.64 E-value=0.37 Score=39.25 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+--...++..|.+...+|..+|||.+|++|+++.
T Consensus 147 ~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 147 EWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34445556678999999999999999999998865
No 184
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=79.61 E-value=3.2 Score=34.80 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+..+++.++.......+..|.+..++|..+|+|+++|++++.
T Consensus 115 R~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 115 REDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp STTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 467888888887777778899999999999999999988775
No 185
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=79.39 E-value=2.9 Score=35.17 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhcC-------------CcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQ-------------LSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g-------------~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+++++|+-+|..|+.. .+..+||...|+|+.|++|+++++..
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467999999999888642 46899999999999999999998764
No 186
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=79.32 E-value=1.9 Score=28.30 Aligned_cols=33 Identities=21% Similarity=-0.021 Sum_probs=25.7
Q ss_pred HHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 36 TLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 36 l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 14 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 14 FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 33344433 5689999999999999999998764
No 187
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=79.05 E-value=3.1 Score=31.89 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++.+||..+|+|++|+++.+++..+.
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4799999999999999999999988654
No 188
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=79.02 E-value=3.6 Score=32.95 Aligned_cols=44 Identities=2% Similarity=0.091 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.+++.+-..+...+- ..+.+..+||..+|++++|+++.+++...
T Consensus 38 ~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 377766554443333 45799999999999999999999998765
No 189
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=78.98 E-value=4.4 Score=32.10 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...++..++-.+.+..-....++.+||..+|+|++|+++.+++....
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34566665544333333345899999999999999999999988654
No 190
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=78.89 E-value=2.8 Score=28.55 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=25.2
Q ss_pred cCCcHHHHHhhh-----CCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQF-----NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~f-----gvs~stv~r~v~~~~~~ 73 (307)
...+..+|+..+ ++|.+||+|.++.+.+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 357899999999 99999999999987654
No 191
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=78.84 E-value=1.7 Score=29.10 Aligned_cols=27 Identities=4% Similarity=0.239 Sum_probs=23.3
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...|.++.++|...|||++|++++.+
T Consensus 11 r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345689999999999999999998764
No 192
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=78.76 E-value=2.2 Score=28.41 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.8
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
-..|.++.++|...|+|++|++++.+
T Consensus 17 ~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 17 TQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35689999999999999999998764
No 193
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=78.69 E-value=2.8 Score=34.95 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHh-cCCcH--HHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 32 VEKKTLVALSYMA-TQLSM--RKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 32 ~~~~l~i~L~~L~-~g~~~--~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+..+-+|+.|. .|.+. .+||..+++|++|+++.+++....
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~ 51 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERD 51 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4677777888875 36767 999999999999999999987664
No 194
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=78.62 E-value=9.4 Score=29.00 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHhhhcCcccccCCC--CCCCCHHHHHHHHHHHHhc--CCcHHHHHhhh--------C--CChhhHHHH
Q psy4300 1 MRKTTFGFLVEALAAINGYETLYERG--VPFVPVEKKTLVALSYMAT--QLSMRKIGDQF--------N--LADSTVWSC 66 (307)
Q Consensus 1 ms~~~F~~L~~~l~~~~~~~~~~~~~--~~~~~~~~~l~i~L~~L~~--g~~~~~l~~~f--------g--vs~stv~r~ 66 (307)
++++|+...+..........+...++ ...++.+..-. .+.++.. ..+...++..+ | +|.+||+++
T Consensus 60 is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~-I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~ 138 (149)
T 1k78_A 60 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEK-IAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRI 138 (149)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHH-HHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHH-HHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHH
Confidence 46788887777766542111221222 34566654333 3334432 47788888877 6 899999999
Q ss_pred HHHH
Q psy4300 67 IDSF 70 (307)
Q Consensus 67 v~~~ 70 (307)
+++.
T Consensus 139 L~~~ 142 (149)
T 1k78_A 139 IRTK 142 (149)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 8753
No 195
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=78.37 E-value=2.1 Score=28.29 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.3
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...|.++.++|...|+|++|++++.+
T Consensus 19 r~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345689999999999999999998764
No 196
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=78.32 E-value=2.8 Score=29.86 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=26.6
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+.+..+++..+|+|++|+++.++...++
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45899999999999999999999998877
No 197
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=78.27 E-value=4.8 Score=31.91 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..++-.+.+..-....++.+||..+|+|++|+++.+++..+.
T Consensus 23 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 23 VPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3466666544443333445899999999999999999999987654
No 198
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=78.25 E-value=1.9 Score=28.57 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=22.7
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
-..|.++.++|...|+|+++++++.+
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34689999999999999999998764
No 199
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=78.13 E-value=2.3 Score=28.78 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 33 EKKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 33 ~~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
...+.-.|..+ ..|.++.++|...|+|++|++++.+
T Consensus 9 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 9 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34455455544 5789999999999999999998764
No 200
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=78.09 E-value=5.5 Score=32.49 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHh-------------cCCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHHHH
Q psy4300 29 FVPVEKKTLVALSYMA-------------TQLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEESVI 94 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~-------------~g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~~~ 94 (307)
..+++++++.+|..|+ ...+..++|...|+|+.|++|+++++... +... ....|...+.+.+..
T Consensus 150 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~~~~i~i~d~~~L~~ 227 (232)
T 2gau_A 150 QKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLAL--DGKRIKIIDCDRLQK 227 (232)
T ss_dssp HSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE--ETTEEEESCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee--CCCEEEEeCHHHHHH
Confidence 4678999999996542 23688999999999999999999998643 3333 445566666555444
Q ss_pred H
Q psy4300 95 I 95 (307)
Q Consensus 95 ~ 95 (307)
+
T Consensus 228 ~ 228 (232)
T 2gau_A 228 T 228 (232)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=78.08 E-value=2 Score=31.67 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=26.3
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
....+..+|+..+|+|++|+++.++....+
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 456799999999999999999999987654
No 202
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=78.07 E-value=1.9 Score=32.43 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=24.5
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+-..|.++.++|..+|+|++|+++|-+
T Consensus 79 ~R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 79 VRKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3457799999999999999999999765
No 203
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=78.05 E-value=3 Score=35.24 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhc---CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 31 PVEKKTLVALSYMAT---QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 31 ~~~~~l~i~L~~L~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+.-++.+-.|..|+. +.+..+|+..+|+++||++|+++.+...
T Consensus 5 ~sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~ 50 (249)
T 1mkm_A 5 NTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEK 50 (249)
T ss_dssp TTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344555556666643 5899999999999999999999988764
No 204
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=77.90 E-value=2.8 Score=32.68 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHH-HHHH-hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVA-LSYM-ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~-L~~L-~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..++..+-.++. |+.. ..+.+..+|+..++++++|+++++++...
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 457775544333 3333 35899999999999999999999998765
No 205
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=77.85 E-value=2.3 Score=32.78 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=33.6
Q ss_pred CCCHHHHH-HHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKT-LVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l-~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+.. +..|+.-..+.+..+|+..+|++++|+++.+++....
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 46665543 3333234567999999999999999999999987654
No 206
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=77.63 E-value=3.3 Score=31.68 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHh-c-CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMA-T-QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~-~-g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..++..+--++.+.+.. . +.+..+|+..++++++|+++++++...
T Consensus 31 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 31 YGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp GTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 35777664444443443 3 379999999999999999999988754
No 207
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=77.56 E-value=3.1 Score=27.07 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.5
Q ss_pred hcCCcHHHHHhhhC--CChhhHHHHHH
Q psy4300 44 ATQLSMRKIGDQFN--LADSTVWSCID 68 (307)
Q Consensus 44 ~~g~~~~~l~~~fg--vs~stv~r~v~ 68 (307)
..|.++.++|...| +|+++++++.+
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 56899999999999 99999998765
No 208
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=77.56 E-value=2.3 Score=29.88 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=23.9
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...|.++.++|...|||++|++++.+
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 456799999999999999999998765
No 209
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=77.53 E-value=2.9 Score=31.62 Aligned_cols=35 Identities=3% Similarity=0.119 Sum_probs=28.7
Q ss_pred HHHHHhcC-CcHHHHHhhh-CCChhhHHHHHHHHHHH
Q psy4300 39 ALSYMATQ-LSMRKIGDQF-NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 39 ~L~~L~~g-~~~~~l~~~f-gvs~stv~r~v~~~~~~ 73 (307)
.|..|..| .++.+|+..+ |+|++|+++.+++....
T Consensus 40 IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 40 ILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp HHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 45555544 8999999999 79999999999987664
No 210
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=77.52 E-value=4.6 Score=34.13 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+.-.+.+..-..+.+..+||..+|+++||++|.++.....
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~ 193 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKF 193 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455544333333234567999999999999999999999998764
No 211
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=77.29 E-value=2.2 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=25.9
Q ss_pred HHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 36 TLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 36 l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 15 ~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 15 LLDLLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34444443 5689999999999999999998765
No 212
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=77.03 E-value=4.3 Score=33.18 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+-.++...+-..+.+..+|+..++++++|+++.+++....
T Consensus 44 ~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~ 89 (207)
T 2fxa_A 44 YDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEER 89 (207)
T ss_dssp GTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4577766555444444568999999999999999999999987653
No 213
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=76.94 E-value=2.5 Score=30.03 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...|.++.++|...|||++|+++|-+
T Consensus 39 R~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 39 RRALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 345799999999999999999999754
No 214
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=76.57 E-value=2 Score=29.96 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 33 ~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...-...|..|+. ..+..+|...|++.||+||+-+.++.
T Consensus 12 r~ies~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~~~ 50 (83)
T 1zs4_A 12 LRIESALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIP 50 (83)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHHH
Confidence 3344556666665 67899999999999999998666544
No 215
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=76.46 E-value=3.7 Score=33.52 Aligned_cols=61 Identities=7% Similarity=-0.030 Sum_probs=44.7
Q ss_pred CHH-HHHHHHHHHHhc-------------CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccccccccccCCChHHHH
Q psy4300 31 PVE-KKTLVALSYMAT-------------QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQIQCQYIKWPTEEESV 93 (307)
Q Consensus 31 ~~~-~~l~i~L~~L~~-------------g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~~~ 93 (307)
+.. ++++-+|..+.. ..+..++|...|+|+.|++|+++++... +... ....|...+.+.++
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d~~~L~ 221 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEV--SPRSVTLLDLAALE 221 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CSSCEEESCHHHHH
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe--cCCEEEEeCHHHHH
Confidence 345 899999988763 3689999999999999999999998654 3333 44555555554443
No 216
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=76.27 E-value=3.4 Score=34.72 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhc---CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 32 VEKKTLVALSYMAT---QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 32 ~~~~l~i~L~~L~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.-++.+-.|..|.. +.+..+|+..+|+++||++|+++.....
T Consensus 4 sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~ 48 (241)
T 2xrn_A 4 VIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE 48 (241)
T ss_dssp HHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44566666777753 4789999999999999999999988764
No 217
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=75.99 E-value=3.5 Score=29.74 Aligned_cols=35 Identities=0% Similarity=0.058 Sum_probs=27.5
Q ss_pred HHHHHh-cCCcHHHHHhhh-CCChhhHHHHHHHHHHH
Q psy4300 39 ALSYMA-TQLSMRKIGDQF-NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 39 ~L~~L~-~g~~~~~l~~~f-gvs~stv~r~v~~~~~~ 73 (307)
.|..|. .+.++.+|+..+ |++++|+++.+++....
T Consensus 30 IL~~L~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 30 IIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp HHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 344444 458999999999 59999999999987653
No 218
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=75.97 E-value=4.5 Score=31.08 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=26.7
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+.+..+++..+|+|++|+++.+++....
T Consensus 52 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999988765
No 219
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=75.96 E-value=5.2 Score=28.63 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=33.7
Q ss_pred CCCH-HHHHHHHHHHHh-----cCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPV-EKKTLVALSYMA-----TQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~-~~~l~i~L~~L~-----~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.+++ .-.++..|+..+ ...++..|+...++++||++|.+.+...
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 3565 444455577773 3479999999999999999999998765
No 220
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=75.86 E-value=2.7 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.0
Q ss_pred HHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 36 TLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 36 l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 44444444 5689999999999999999998765
No 221
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=75.84 E-value=2.3 Score=29.80 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=25.5
Q ss_pred HHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 36 TLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 36 l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.-.|..+ ..|.++.++|...|+|++|++++.+
T Consensus 10 ~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 10 FSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 33444444 4578999999999999999998764
No 222
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=75.79 E-value=1.8 Score=30.03 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=23.3
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
...|.++.++|...|+|++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45699999999999999999999875
No 223
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=75.66 E-value=14 Score=31.28 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..++..++-.+.|. +.|.+..++|...|+|..||...+.+...-+-..
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 57888887776665 6999999999999999999999999987777655
No 224
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=75.48 E-value=3.3 Score=34.17 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHh--------------c-CCcHHHHHhhhCCChh-hHHHHHHHHHHH-ccccccccccccCCChHH
Q psy4300 29 FVPVEKKTLVALSYMA--------------T-QLSMRKIGDQFNLADS-TVWSCIDSFLTA-MSQPQIQCQYIKWPTEEE 91 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~--------------~-g~~~~~l~~~fgvs~s-tv~r~v~~~~~~-l~~~l~~~~~i~~P~~~~ 91 (307)
..+++++|+-+|..|+ - ..+..+||...|+|++ |++|+++++... +... ....|...+.+.
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~--~~~~i~I~d~~~ 214 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY--KNSCFYVQNLDY 214 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE--ETTEEEESCHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe--cCCEEEEeCHHH
Confidence 4578999999998764 1 5788999999999995 999999998753 3344 455566666655
Q ss_pred HHHHH
Q psy4300 92 SVIIE 96 (307)
Q Consensus 92 ~~~~~ 96 (307)
+..+.
T Consensus 215 L~~~~ 219 (238)
T 2bgc_A 215 LKRYA 219 (238)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 55443
No 225
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=75.08 E-value=6.6 Score=29.60 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHH------HhcCC---cHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSY------MATQL---SMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~------L~~g~---~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
++.+|.-+|+.-.|.. |.-|. +-++||..||||++||.+.+.....
T Consensus 10 ~s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~ 64 (134)
T 4ham_A 10 KSQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELER 64 (134)
T ss_dssp TSSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678888888877775 34453 6789999999999999988887643
No 226
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=75.05 E-value=5.9 Score=28.82 Aligned_cols=68 Identities=6% Similarity=-0.012 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhhcCcccccCC--CCCCCCHHHHHHHHHHHHhc--CCcHHHHHhhh---C-------CChhhHHHH
Q psy4300 1 MRKTTFGFLVEALAAINGYETLYER--GVPFVPVEKKTLVALSYMAT--QLSMRKIGDQF---N-------LADSTVWSC 66 (307)
Q Consensus 1 ms~~~F~~L~~~l~~~~~~~~~~~~--~~~~~~~~~~l~i~L~~L~~--g~~~~~l~~~f---g-------vs~stv~r~ 66 (307)
++++|+...+......-...+...+ ....++.+.. ...+.++.. ..+...++..+ | +|.+||+++
T Consensus 45 is~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~-~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~ 123 (128)
T 1pdn_C 45 VSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIE-NRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRL 123 (128)
T ss_dssp CCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHH-HHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHH-HHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHH
Confidence 4677887777776554211121112 2345665433 223344433 47888999988 7 599999998
Q ss_pred HHH
Q psy4300 67 IDS 69 (307)
Q Consensus 67 v~~ 69 (307)
+++
T Consensus 124 l~~ 126 (128)
T 1pdn_C 124 VRG 126 (128)
T ss_dssp C--
T ss_pred HHh
Confidence 764
No 227
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=74.87 E-value=4.2 Score=29.64 Aligned_cols=36 Identities=8% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHhcC-Cc--HHHHHhhh-CCChhhHHHHHHHHHHH
Q psy4300 38 VALSYMATQ-LS--MRKIGDQF-NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 38 i~L~~L~~g-~~--~~~l~~~f-gvs~stv~r~v~~~~~~ 73 (307)
..|+.|..| .+ +.+|+..+ |+|++++++.++.....
T Consensus 31 ~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 31 LIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 345556555 45 99999999 99999999999988765
No 228
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=74.80 E-value=3.7 Score=28.43 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=33.1
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccccccccccCCChHHHHHHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQIQCQYIKWPTEEESVIIERNFR 100 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l~~~~~i~~P~~~~~~~~~~~f~ 100 (307)
.+...|.++.++|...|+|+++++++.+.- .-|+.+.+..+++.|.
T Consensus 21 ~r~~~glsq~~lA~~~gis~~~is~~e~g~--------------~~p~~~~l~~la~~l~ 66 (91)
T 1x57_A 21 GRQSKGLTQKDLATKINEKPQVIADYESGR--------------AIPNNQVLGKIERAIG 66 (91)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHHTC--------------SCCCHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCC--------------CCCCHHHHHHHHHHHC
Confidence 345678999999999999999999877531 1255555556666553
No 229
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=74.15 E-value=1.8 Score=37.98 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=20.1
Q ss_pred cHHHHHhhhCCChhhHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+..++|..+|||.+||||+++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5789999999999999999983
No 230
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=74.01 E-value=3.1 Score=34.10 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=25.9
Q ss_pred HHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 39 ALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 39 ~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
...++..|.+...+|..+|+|.+|++++++.
T Consensus 168 i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 168 VVEMLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 3344568999999999999999999998753
No 231
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=73.70 E-value=2.5 Score=32.95 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=26.7
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
....+..+|+..+|+|++|+++.++....+
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999988765
No 232
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=73.33 E-value=6.4 Score=29.52 Aligned_cols=45 Identities=4% Similarity=0.067 Sum_probs=33.0
Q ss_pred CCCHHHH-HHHHHHHHh----cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKK-TLVALSYMA----TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~-l~i~L~~L~----~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.++..+. |++.|.++. .+.+...||..+|+|.++|.+.++.....
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4555444 445555542 23799999999999999999999987763
No 233
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=73.30 E-value=3.5 Score=28.74 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.++-++|--. +-..|.+..++|...|+|++|++++.+.
T Consensus 7 ~~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 7 PRPGDIIQES--LDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CCHHHHHHHH--HHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CChhHHHHHH--HHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3455555322 3455899999999999999999998864
No 234
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=73.02 E-value=4.8 Score=28.23 Aligned_cols=27 Identities=0% Similarity=0.190 Sum_probs=22.7
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
...+..+|+..|+||.+||.+-++.+.
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 347899999999999999888777654
No 235
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=72.98 E-value=6.2 Score=30.11 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
+|-+++....+ .|+...|...|+|+|++++.|.++-..+-..|
T Consensus 28 ~L~~f~av~e~-gS~s~AA~~L~iSqsavS~~I~~LE~~lG~~L 70 (135)
T 2ijl_A 28 KVELMQLIAET-GSISAAGRAMDMSYRRAWLLVDALNHMFRQPV 70 (135)
T ss_dssp HHHHHHHHHHH-SCHHHHHHHTTCCHHHHHHHHHHHHHHBSSCS
T ss_pred HHHHHHHHHHh-CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCee
Confidence 44444444444 58999999999999999999999999987765
No 236
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=72.75 E-value=1.7 Score=37.90 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=20.9
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..++|..+|||.+||||+++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46889999999999999999875
No 237
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=72.71 E-value=3 Score=35.49 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMA---TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~---~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
...+..-++.+-.|..|+ .+.+..+|+..+|+++||++|+++.+...
T Consensus 16 ~~~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~ 65 (260)
T 2o0y_A 16 DAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCAR 65 (260)
T ss_dssp --CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345677778888888885 36899999999999999999999988764
No 238
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=72.65 E-value=2.8 Score=30.38 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+.++-+.|.-.+ +-..|.++.++|...|||++|++++.+
T Consensus 10 ~~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 10 RPIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4556655554321 346789999999999999999999876
No 239
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=72.57 E-value=7.1 Score=28.34 Aligned_cols=30 Identities=0% Similarity=-0.024 Sum_probs=26.5
Q ss_pred hcCCcHHHHHhhh-CCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQF-NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~f-gvs~stv~r~v~~~~~~ 73 (307)
..+.++.+|+..+ |++++|+++.+++....
T Consensus 33 ~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 33 QGTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 3568999999999 99999999999987664
No 240
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=72.54 E-value=4.1 Score=29.99 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=25.3
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
....+..+|+..+|+|++|+++.++....
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44578899999999999999999998765
No 241
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=72.36 E-value=2.4 Score=30.29 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
...+-+.| --.+-..|.++.++|...|+|++|++++.+
T Consensus 16 ~~~~g~~l--~~~r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 16 PIHPGEVI--ADILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp CCCHHHHH--HHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHH--HHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34455554 223345689999999999999999999876
No 242
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=72.29 E-value=6.4 Score=30.13 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=23.8
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+..+||...+++++|+++++++....
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 689999999999999999999987653
No 243
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=72.20 E-value=6.9 Score=28.71 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=33.5
Q ss_pred CCCCHHH-HHHHHHHHHhcCCcHHHHHhhhC----CChhhHHHHHHHHHH
Q psy4300 28 PFVPVEK-KTLVALSYMATQLSMRKIGDQFN----LADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~-~l~i~L~~L~~g~~~~~l~~~fg----vs~stv~r~v~~~~~ 72 (307)
..+++.+ .++.+||- ..+.+..+|+..++ ++.+|+++++++...
T Consensus 6 ~~Lt~~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCCCHHHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 3466655 45555554 56799999999997 589999999998765
No 244
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=72.19 E-value=19 Score=26.34 Aligned_cols=36 Identities=8% Similarity=0.397 Sum_probs=30.2
Q ss_pred HHHHHH-HHHhcCCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 35 KTLVAL-SYMATQLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 35 ~l~i~L-~~L~~g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
++..+| -||-.|.+-.+++..+||+++-+++.++++
T Consensus 48 kII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL 84 (111)
T 3m8j_A 48 RVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRL 84 (111)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHH
Confidence 344444 489999999999999999999999988864
No 245
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=72.18 E-value=6 Score=28.77 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 29 FVPVEKKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.......+.-.|..+ ..|.++.++|...|+|+++++++-+
T Consensus 15 ~~~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 15 EQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345666777777765 5789999999999999999998753
No 246
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=72.17 E-value=4.1 Score=31.21 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=25.2
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+...|.++.++|...|+|+++++++.+.
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34678999999999999999999998763
No 247
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=72.15 E-value=3.3 Score=29.87 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.5
Q ss_pred cHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+.++||..||||++||.+.+......
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 78999999999999999999987654
No 248
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=71.92 E-value=5.7 Score=26.99 Aligned_cols=42 Identities=2% Similarity=0.037 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhcC--CcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMATQ--LSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g--~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
++..+++.=++..|..| .+-..||..+|++++.|.|++..+.
T Consensus 11 ~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~ 54 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ 54 (75)
T ss_dssp HHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34556666666677665 4788999999999999888776653
No 249
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=71.89 E-value=4 Score=29.11 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 31 PVEKKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 31 ~~~~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.....+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 24 ~~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 24 FLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3455666666655 5799999999999999999998765
No 250
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=71.57 E-value=2.7 Score=40.68 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHh---cCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 28 PFVPVEKKTLVALSYMA---TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~---~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
..+|+.++-.+.|+|+- .|.|+..+|..+|+|.+||.....+....|-..+
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~ 602 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCS
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCcc
Confidence 57999999999998872 6889999999999999999999999988887764
No 251
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=71.50 E-value=9.2 Score=32.84 Aligned_cols=67 Identities=6% Similarity=-0.029 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccccccccccCCChHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQIQCQYIKWPTEEESVIIER 97 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l~~~~~i~~P~~~~~~~~~~ 97 (307)
.+|+..+-++.|.++ .|.++.++|...|++.+|+...+.+....+...+ ....+---.......+..
T Consensus 111 ~Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l-~~rILvVdD~~~~~~~l~ 177 (286)
T 3n0r_A 111 RIAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAEL-ATEVLIIEDEPVIAADIE 177 (286)
T ss_dssp HHSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC-CCEEEEECCSHHHHHHHH
T ss_pred hCCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccC-CCcEEEEcCCHHHHHHHH
Confidence 356777777777766 4799999999999999999999999888887774 333333333333443333
No 252
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=71.48 E-value=4.1 Score=28.57 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.0
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+-..|.++.++|...|+|++|++++.+
T Consensus 13 r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 13 RKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345689999999999999999988654
No 253
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=71.45 E-value=0.82 Score=37.18 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 36 TLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 36 l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+--...++..|.+...+|..+|+|.+|++++++..-..
T Consensus 148 v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 33344556789999999999999999999998764433
No 254
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=71.27 E-value=5 Score=34.01 Aligned_cols=91 Identities=7% Similarity=0.130 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHhc---CCcHHHHHhhhCCChhhHHHHHHHHHHHc-ccccccccc------c----cCCChHHH-
Q psy4300 28 PFVPVEKKTLVALSYMAT---QLSMRKIGDQFNLADSTVWSCIDSFLTAM-SQPQIQCQY------I----KWPTEEES- 92 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~l-~~~l~~~~~------i----~~P~~~~~- 92 (307)
..+..-++.+-.|..|.. +.+..+|+..+|+++||++|+++.+...= ...- ...| + .+....++
T Consensus 8 ~~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~-~~~Y~Lg~~~~~l~~~~~~~~~l~ 86 (257)
T 2g7u_A 8 DYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS-GGRWSLTPRVLSIGQHYSESHALI 86 (257)
T ss_dssp CCCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECGGGHHHHTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-CCEEEEcHHHHHHHHHhhccCcHH
Confidence 346667777778888863 58999999999999999999999887632 2110 1112 1 11111122
Q ss_pred ---HHHHHHHHHhhCCCCcceeecceeEEe
Q psy4300 93 ---VIIERNFRALAKFPGVIGAIDGCHIEG 119 (307)
Q Consensus 93 ---~~~~~~f~~~~~~p~~~g~iDgt~i~i 119 (307)
...++...+..+..-.+++.|+.++-+
T Consensus 87 ~~a~p~l~~L~~~~~etv~L~v~~g~~~v~ 116 (257)
T 2g7u_A 87 EAAMPRLLEVAEKTQESASLGVLDGADVVY 116 (257)
T ss_dssp HHHHHHHHHHHHHHSSCEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCEEEE
Confidence 233444444557777788888776544
No 255
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=71.19 E-value=3.7 Score=31.14 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=32.6
Q ss_pred CCCHHHH-HHHHHHHHhcCCcHHHHHhhhC----CChhhHHHHHHHHHH
Q psy4300 29 FVPVEKK-TLVALSYMATQLSMRKIGDQFN----LADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~-l~i~L~~L~~g~~~~~l~~~fg----vs~stv~r~v~~~~~ 72 (307)
.++..+. ++.+||....+.+..+|+..++ ++.+||++++++...
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3555444 4444443346799999999997 899999999998765
No 256
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=71.02 E-value=2.3 Score=37.75 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.8
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..+||..+|||.+||||+++.
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHCC
Confidence 57889999999999999999963
No 257
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=70.87 E-value=4.1 Score=29.54 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+-..|.++.++|...|+|++|++++-+
T Consensus 18 r~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 18 KKEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345689999999999999999998765
No 258
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=70.86 E-value=5.5 Score=30.13 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=26.4
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+|.+..+||..||+|..+|.+++.+.-..
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999987654
No 259
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=70.75 E-value=5.7 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=26.2
Q ss_pred HHHHHHHHH----hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 35 KTLVALSYM----ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 35 ~l~i~L~~L----~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 34 ~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 34 EVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445555555 4589999999999999999888643
No 260
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=70.61 E-value=3.3 Score=33.05 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=25.4
Q ss_pred HHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 39 ALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 39 ~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
--++-.+|.++.++|...|||++|++++-+
T Consensus 96 k~lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 96 GDWMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345578899999999999999999988644
No 261
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=70.51 E-value=5 Score=29.22 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 41 SYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 41 ~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+...|.++.++|...|+|+++++++-+
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3456799999999999999999999866
No 262
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=70.51 E-value=13 Score=28.42 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhh-----CCChhhHHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMATQLSMRKIGDQF-----NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 33 ~~~l~i~L~~L~~g~~~~~l~~~f-----gvs~stv~r~v~~~~~~ 73 (307)
+..++-.|.--....+-.+|...+ ++|.+||+|.++.+.+.
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 334443443323357888898888 89999999998877553
No 263
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=70.44 E-value=2 Score=37.79 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.7
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..+||..+|||.+||||+++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 57899999999999999998864
No 264
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=70.33 E-value=3.5 Score=26.99 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.1
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
.+..+++..+|+|++|+++.+++-
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 467799999999999999999864
No 265
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=70.24 E-value=4 Score=30.35 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 35 KTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 35 ~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 40 ~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 40 RLAYALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344444444 5689999999999999999998764
No 266
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=70.09 E-value=4.1 Score=29.18 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=23.5
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+-..|.++.++|...|+|++|++++.+
T Consensus 10 r~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 10 RKEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 346789999999999999999998765
No 267
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=69.95 E-value=8.8 Score=27.42 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
.+....+..++|..+|+|++++++.+++..
T Consensus 17 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 17 HFSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp HTTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345567899999999999999999998864
No 268
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=69.91 E-value=6.3 Score=28.66 Aligned_cols=41 Identities=10% Similarity=0.099 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
..-.....+.-.|..+ ..|.++.++|...|+|+++++++-+
T Consensus 21 ~~~~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 21 PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3445677777777766 5689999999999999999998764
No 269
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=69.60 E-value=5 Score=33.29 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHh-cCCcH--HHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMA-TQLSM--RKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 33 ~~~l~i~L~~L~-~g~~~--~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+..+.+|+.|. .|.+. .+||..++++++|+++.+++....
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 51 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERD 51 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 566677777774 35555 999999999999999999987765
No 270
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=69.32 E-value=7.1 Score=29.56 Aligned_cols=35 Identities=3% Similarity=0.002 Sum_probs=28.6
Q ss_pred HHHHHhc-CCcHHHHHhhh-CCChhhHHHHHHHHHHH
Q psy4300 39 ALSYMAT-QLSMRKIGDQF-NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 39 ~L~~L~~-g~~~~~l~~~f-gvs~stv~r~v~~~~~~ 73 (307)
.|+.|.. ..++.+|+... |||++++++.+++....
T Consensus 31 IL~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 31 LFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp HHHHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 4444544 58999999999 99999999999987764
No 271
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=69.08 E-value=6.1 Score=31.15 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=33.7
Q ss_pred CCCCHHHHH-HHHHHHHhc--CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKT-LVALSYMAT--QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l-~i~L~~L~~--g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..+-. +..|+.-.. |.+..+|+..++++++|+++.+++....
T Consensus 65 ~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp TTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356765543 344433332 3899999999999999999999988764
No 272
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=69.00 E-value=6.8 Score=32.46 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=25.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+.++..+|..+++|++|+++.+++...
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999988
No 273
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=68.99 E-value=4 Score=29.31 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=32.7
Q ss_pred CCCH-HHHHHHHHHHHhcCCcHHHHHhhhC----CChhhHHHHHHHHHH
Q psy4300 29 FVPV-EKKTLVALSYMATQLSMRKIGDQFN----LADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~-~~~l~i~L~~L~~g~~~~~l~~~fg----vs~stv~r~v~~~~~ 72 (307)
.++. +..++.+||- ..+.+..+|+..++ ++.+||.+++++...
T Consensus 32 ~LT~~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 32 NVSNAELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CCCCSCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 3444 4456666665 55899999999986 578999999998765
No 274
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=68.86 E-value=4.4 Score=29.65 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred cHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+.++||..||||++||.+.+.....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7889999999999999999998765
No 275
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=68.81 E-value=7.9 Score=30.16 Aligned_cols=28 Identities=14% Similarity=0.410 Sum_probs=24.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++.+||..+|+|.+|+.+-+++..+.
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3799999999999999999999987653
No 276
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=68.58 E-value=4.2 Score=29.17 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 36 TLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 36 l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
-...|..|+. .+++.+|...||+.||+||+-+...+
T Consensus 14 es~il~~la~-~gq~~vA~~iGV~~StISR~k~~~~~ 49 (97)
T 1xwr_A 14 ESALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIP 49 (97)
T ss_dssp HHHHHHHHHH-HCHHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 3344555553 67999999999999999997665544
No 277
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=68.19 E-value=4.6 Score=29.89 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=23.8
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...|.++.++|...|+|+++++++-+
T Consensus 21 R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 21 RKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 446799999999999999999998765
No 278
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=68.04 E-value=7.8 Score=31.03 Aligned_cols=42 Identities=5% Similarity=0.128 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhc---CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 32 VEKKTLVALSYMAT---QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 32 ~~~~l~i~L~~L~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++..-.|..|.. +.+..+||..||||++||.+-+......
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34555556667752 3899999999999999999999877653
No 279
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=68.00 E-value=7.2 Score=32.69 Aligned_cols=43 Identities=2% Similarity=0.047 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
+|-.++....+ .|++..|...++|+|++|+.+++.-..+-..|
T Consensus 5 ~l~~f~~v~~~-gs~s~AA~~L~isq~avS~~i~~LE~~lg~~L 47 (294)
T 1ixc_A 5 QLKYFIAVAEA-GNMAAAAKRLHVSQPPITRQMQALEADLGVVL 47 (294)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHc-CCHHHHHHHhCCCcchHHHHHHHHHHHHCCEE
Confidence 34444444444 48999999999999999999999999988776
No 280
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=67.86 E-value=3.2 Score=30.06 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=23.1
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
-..|.++.++|...|+|++|++++.+
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35689999999999999999999865
No 281
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=67.65 E-value=4.9 Score=34.27 Aligned_cols=92 Identities=9% Similarity=0.121 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHhc---CCcHHHHHhhhCCChhhHHHHHHHHHHH-ccccc-----cccccccCCC--------hH
Q psy4300 28 PFVPVEKKTLVALSYMAT---QLSMRKIGDQFNLADSTVWSCIDSFLTA-MSQPQ-----IQCQYIKWPT--------EE 90 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~-l~~~l-----~~~~~i~~P~--------~~ 90 (307)
..+..-++.+-.|..|+. +.+..+|+..+|+++||++|+++.+... +...- ..+..+.+-. .+
T Consensus 15 ~~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~~~lg~~~~~~~~l~~ 94 (265)
T 2ia2_A 15 DYVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPE 94 (265)
T ss_dssp -CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESSSEEEECGGGGGTTHHHHTTCCHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCEEEEcHHHHHHHHHHHhcCCHHH
Confidence 356677788888888863 5789999999999999999999987754 22210 0122222211 11
Q ss_pred HHHHHHHHHHHhhCCCCcceeecceeEEe
Q psy4300 91 ESVIIERNFRALAKFPGVIGAIDGCHIEG 119 (307)
Q Consensus 91 ~~~~~~~~f~~~~~~p~~~g~iDgt~i~i 119 (307)
.....++...+..+..-.+++.|+.++-+
T Consensus 95 ~a~p~l~~L~~~~getv~L~v~~g~~~v~ 123 (265)
T 2ia2_A 95 VAQPHLEKLSHKVHESSSVSILDGADIVY 123 (265)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCCEEEEEEEECCEEEE
Confidence 22244455555556666778888776544
No 282
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=67.12 E-value=10 Score=27.05 Aligned_cols=28 Identities=4% Similarity=0.188 Sum_probs=24.1
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+....+..++|..+|+|.+++++.+++.
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445788999999999999999999876
No 283
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=66.90 E-value=17 Score=25.61 Aligned_cols=43 Identities=12% Similarity=-0.036 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 31 PVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 31 ~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+-.+-+.-.|..+..|.+.+.|+...|+|.++++++++.+...
T Consensus 5 s~~eIi~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~~~ 47 (95)
T 1r7j_A 5 SKLEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDL 47 (95)
T ss_dssp CHHHHHHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 3445566677788777999999999999999999999887653
No 284
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=65.98 E-value=5.1 Score=29.92 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHH-hc-----C---CcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYM-AT-----Q---LSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L-~~-----g---~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...+..+++.-.|... .+ | .|.++||..||||++||.+.+.....
T Consensus 10 ~~~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 10 ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp SSSCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455666665555432 22 2 26889999999999999999998765
No 285
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=65.68 E-value=4.5 Score=33.65 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 37 LVALSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 37 ~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+--++...|.++.+||...|||+|++|++.+
T Consensus 35 ~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 35 MIKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 34445667899999999999999999999886
No 286
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=65.40 E-value=6.5 Score=31.83 Aligned_cols=29 Identities=7% Similarity=0.332 Sum_probs=24.9
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
....+..+||..+|+|++|+++.+++...
T Consensus 31 ~~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999999999999998887643
No 287
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=65.26 E-value=5.2 Score=29.34 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=24.0
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+...|.++.++|...|||+++++++-+.
T Consensus 16 R~~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3456899999999999999999988663
No 288
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=65.03 E-value=8.5 Score=31.60 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHh---cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 35 KTLVALSYMA---TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 35 ~l~i~L~~L~---~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+-+++.|. .+.+..+||..+++|++|+++.+++....
T Consensus 6 dYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 6 DYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp HHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 3444555553 35899999999999999999999987664
No 289
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=64.87 E-value=2.2 Score=28.17 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.2
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
.+..++|..+|||.+|+.+++..-.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 3567899999999999999988743
No 290
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=64.67 E-value=15 Score=27.89 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=32.1
Q ss_pred CCCHHHHH-HHHHHHH----hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKT-LVALSYM----ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l-~i~L~~L----~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.++..+.+ ++.|..+ ..+.+...||..+|+|.++|.+++...+.
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35554443 3334433 24589999999999999999999998876
No 291
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=64.42 E-value=15 Score=30.50 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhhhcC--cccccCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 1 MRKTTFGFLVEALAAING--YETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 1 ms~~~F~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
|++...+.+++.|+..+. ..++ ...+| +-++|+..||||+++|...+.....
T Consensus 1 m~~~l~~~v~~~L~~~I~~g~l~p----G~~Lp----------------sE~~La~~lgVSRtpVREAL~~L~~ 54 (239)
T 2di3_A 1 MSVKAHESVMDWVTEELRSGRLKI----GDHLP----------------SERALSETLGVSRSSLREALRVLEA 54 (239)
T ss_dssp -CHHHHHHHHHHHHHHHHHTSSCT----TCBCC----------------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCCCCC----CCcCC----------------CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777888888877651 1111 12222 4568999999999999999887653
No 292
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=64.42 E-value=5.7 Score=32.37 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.8
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
....|.++.++|...|+|+|++|++++
T Consensus 39 l~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 39 LQQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 346799999999999999999999954
No 293
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=64.26 E-value=6 Score=29.60 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHH-HhcC--------CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSY-MATQ--------LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 29 ~~~~~~~l~i~L~~-L~~g--------~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+..+++.-.|.. +..| .+.++||..||||++||.+.+......
T Consensus 9 ~~~~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~ 62 (126)
T 3by6_A 9 KRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQ 62 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34556666655543 2332 388999999999999999999987643
No 294
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=64.13 E-value=8.9 Score=32.31 Aligned_cols=43 Identities=5% Similarity=0.090 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
+|-.++....+ .|++..|...++|+|++|+.+++.-..+-..|
T Consensus 8 ~l~~f~~v~~~-~s~s~AA~~L~isq~avS~~i~~LE~~lg~~L 50 (306)
T 3fzv_A 8 QLKYFVTTVEC-GSVAEASRKLYIAQPSISTAVKGLEESFGVQL 50 (306)
T ss_dssp HHHHHHHHHHS-SSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCC
T ss_pred HHHHHHHHHHh-CCHHHHHHHhCCCchHHHHHHHHHHHHhCCee
Confidence 34444444444 58999999999999999999999999998876
No 295
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=63.40 E-value=8.8 Score=32.53 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
+|-.++....+ .|++..|...++|+|++|+.+++....+-..|
T Consensus 14 ~L~~f~~v~~~-gs~s~AA~~L~isq~avS~~I~~LE~~lg~~L 56 (310)
T 2esn_A 14 LLLVFDALYRH-RNVGTAASELAISASAFSHALGRLRQGLDDEL 56 (310)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHc-CCHHHHHHHhCCChHHHHHHHHHHHHhhCCcc
Confidence 44444444444 48999999999999999999999999887776
No 296
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=63.13 E-value=11 Score=30.23 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+.++||..+|+|++|+++.++....
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 479999999999999998888877654
No 297
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=63.01 E-value=15 Score=23.50 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=22.5
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.++......|...|||++|+++.+++
T Consensus 30 ~~~gn~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 30 EYDYDLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HTTTCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 55677889999999999999998775
No 298
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=62.90 E-value=1.5 Score=35.60 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=1.1
Q ss_pred CCCHHHHHHHHHHHHhc-------CCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMAT-------QLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~-------g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
..+++++++.+|..+.. ..+..++|...|+|+.|++|+++++.
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 189 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELE 189 (213)
T ss_dssp CC------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46788889888887752 46889999999999999999999875
No 299
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=62.79 E-value=5.7 Score=33.74 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhc---CCcHHHHHhhhCCChhhHHHHHHHHHHHcccccccc---ccccCCCh--------------HH
Q psy4300 32 VEKKTLVALSYMAT---QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQIQC---QYIKWPTE--------------EE 91 (307)
Q Consensus 32 ~~~~l~i~L~~L~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l~~~---~~i~~P~~--------------~~ 91 (307)
.-++.+-.|..|+. +.+..+|+...|+++||++|+++.....=+-.- .+ .|.-=|.- +.
T Consensus 4 sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~-~~~~~~Y~lG~~~~~lg~~~~~~~~l~~~ 82 (260)
T 3r4k_A 4 TVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ-VEGARSYRLGPQVLRLAALREASVPILSA 82 (260)
T ss_dssp HHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-CSSSSEEEECTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-cCCCCcEEcCHHHHHHHHHHHhcCCHHHH
Confidence 44556666666753 478999999999999999999998876533221 11 22211211 11
Q ss_pred HHHHHHHHHHhhCCCCcceeecceeEEe
Q psy4300 92 SVIIERNFRALAKFPGVIGAIDGCHIEG 119 (307)
Q Consensus 92 ~~~~~~~f~~~~~~p~~~g~iDgt~i~i 119 (307)
....++.+.+..+..-.+++.|+.++-+
T Consensus 83 a~p~l~~L~~~~getv~L~v~~g~~~v~ 110 (260)
T 3r4k_A 83 SRRVLRELSEDTGETTHLSLLQGEQLAS 110 (260)
T ss_dssp HHHHHHHHHHHHSSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhCCeEEEEEEECCEEEE
Confidence 1233444455556666777888776544
No 300
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=62.09 E-value=9.5 Score=30.54 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.++..+. -.|.+|..|.+..++|...++|..||...+.+...-|-..
T Consensus 154 ~Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~ 200 (215)
T 1a04_A 154 QLTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 200 (215)
T ss_dssp GSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 4666654 4577889999999999999999999999999987776543
No 301
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=61.87 E-value=11 Score=31.88 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 36 TLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 36 l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
|-.++....+ .|++..|...++|+|++|+.+.+.-..+-..|
T Consensus 7 L~~f~~v~~~-gs~t~AA~~L~isq~avS~~i~~LE~~lg~~L 48 (305)
T 3fxq_A 7 LQALICIEEV-GSLRAAAQLLHLSQPALSAAIQQLEDELKAPL 48 (305)
T ss_dssp HHHHHHHHHH-SCHHHHHHHTTCCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHc-CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCee
Confidence 3334433343 58999999999999999999999999988776
No 302
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=61.81 E-value=10 Score=30.89 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
..++..+. -.|.+|..|.+..++|...++|..||...+.+...-|...
T Consensus 148 ~~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 148 SGLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TTSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 45777664 3567789999999999999999999999999887766543
No 303
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=61.63 E-value=1.7 Score=38.02 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=0.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..++|..+|||.+||||+++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 47889999999999999999986
No 304
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=61.54 E-value=1.7 Score=37.97 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=0.0
Q ss_pred cHHHHHhhhCCChhhHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+..+||..+|||.+||||+++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 6789999999999999999986
No 305
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=61.47 E-value=6.8 Score=32.35 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=31.2
Q ss_pred CCCHHHH-----HHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 29 FVPVEKK-----TLVALSYM--ATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 29 ~~~~~~~-----l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.++.+++ +.-.|..+ ..|.++.++|..+|+|++|++++.+.
T Consensus 6 ~lt~~~~~~~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 6 PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4555444 55556655 35789999999999999999999864
No 306
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=61.18 E-value=7.7 Score=33.25 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhc---CCcHHHHHhhhCCChhhHHHHHHHHHHHc
Q psy4300 28 PFVPVEKKTLVALSYMAT---QLSMRKIGDQFNLADSTVWSCIDSFLTAM 74 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~l 74 (307)
..++.-++.+-.|..|+. +.+..+|+...|+++||++|++......=
T Consensus 24 ~~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G 73 (275)
T 3mq0_A 24 DTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELD 73 (275)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456677888888888864 47899999999999999999999887653
No 307
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=61.07 E-value=12 Score=26.11 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=23.4
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
-.++......|...|||++|+++.+++.
T Consensus 61 ~~~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 61 RHTQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 3556678899999999999999988764
No 308
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=60.74 E-value=1.8 Score=38.26 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=0.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..+||..+|||.+||||+++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 36789999999999999999986
No 309
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=60.45 E-value=1.8 Score=37.93 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=0.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..+||..+|||.+||||+++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 56789999999999999999975
No 310
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=60.19 E-value=9.3 Score=26.74 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=22.6
Q ss_pred HHhcCCcHHHHHhhhCCChhh----HHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADST----VWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~st----v~r~v~ 68 (307)
+...|.++.++|...|+|++| ++++-+
T Consensus 10 R~~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 10 RLRAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 446789999999999999999 776654
No 311
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=60.10 E-value=1.9 Score=37.80 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=0.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..++|..+|||.+||||+++.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 35789999999999999999986
No 312
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=60.00 E-value=7.5 Score=29.21 Aligned_cols=25 Identities=8% Similarity=0.148 Sum_probs=22.1
Q ss_pred cHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+.++||..||||++||.+.+.....
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~ 54 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVE 54 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999998888654
No 313
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=59.97 E-value=1.9 Score=38.10 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=0.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
.+..++|..+|||.+||||+++.-
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 467899999999999999999864
No 314
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=59.79 E-value=3.9 Score=29.16 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.7
Q ss_pred cHHHHHhhhCCChhhHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+.++|+..||+|++||++.+...
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 78999999999999988866553
No 315
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=59.63 E-value=13 Score=26.35 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=23.3
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
...+..++|..+|+|.+++++.+++..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346788999999999999999998763
No 316
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=59.55 E-value=14 Score=27.45 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 33 EKKTLVALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 33 ~~~l~i~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
...+.-++.+|. ...+..++|..+|+|.++++|.+++..
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456777777886 578999999999999999999998753
No 317
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=59.29 E-value=19 Score=25.28 Aligned_cols=26 Identities=8% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
..+..++|..+|+|.+++++.+++..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56889999999999999999998874
No 318
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=59.18 E-value=2 Score=37.71 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=0.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..++|..+|||.+||||+++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999984
No 319
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=58.58 E-value=13 Score=31.15 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 36 TLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 36 l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
|-.++. ++...|++..|...++|+|++|+.+++.-..+-..|
T Consensus 8 l~~f~~-v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~~L 49 (306)
T 3hhg_A 8 LTVFVQ-VVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNL 49 (306)
T ss_dssp HHHHHH-HHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHH-HHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCee
Confidence 333333 344458999999999999999999999999998776
No 320
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=58.57 E-value=16 Score=27.00 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+-.+||..+|+|++++.+++.....+
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3688999999999999999999887654
No 321
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=58.45 E-value=2.1 Score=37.88 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+..+||..+|||.+||||+++.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 46789999999999999999984
No 322
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=57.76 E-value=8.1 Score=28.97 Aligned_cols=27 Identities=0% Similarity=0.041 Sum_probs=23.6
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+-..|.|+.++|...|+|+++++++=+
T Consensus 12 R~~~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 12 RERLGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 446799999999999999999998754
No 323
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=57.50 E-value=15 Score=28.24 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=20.5
Q ss_pred cCCcHHHHHhhh----------CCChhhHHHHHHHH
Q psy4300 45 TQLSMRKIGDQF----------NLADSTVWSCIDSF 70 (307)
Q Consensus 45 ~g~~~~~l~~~f----------gvs~stv~r~v~~~ 70 (307)
...+...++..+ .+|.+||++++++.
T Consensus 100 ~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 100 PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135 (159)
T ss_dssp SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHH
Confidence 357888888866 48999999988865
No 324
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=56.52 E-value=15 Score=32.05 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhh----C---CChhhHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMATQLSMRKIGDQF----N---LADSTVWSCIDSFLT 72 (307)
Q Consensus 33 ~~~l~i~L~~L~~g~~~~~l~~~f----g---vs~stv~r~v~~~~~ 72 (307)
.+.=.+++..+..|.+...++..+ | +|++||.++++++..
T Consensus 9 ~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~ 55 (345)
T 3hot_A 9 EQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS 55 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 333355667788899998887774 5 999999999999865
No 325
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=56.25 E-value=11 Score=27.12 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=23.0
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
...+..++|..+|+|.+++++.+++.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34688999999999999999999886
No 326
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=56.12 E-value=15 Score=29.15 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.++..+.- .|.++..|.+..++|..+++|..||...+.+...-+...
T Consensus 142 ~Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 142 SLTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp TSCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred hcCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 46665544 456678999999999999999999999888887776543
No 327
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=55.72 E-value=2.4 Score=33.61 Aligned_cols=43 Identities=5% Similarity=0.038 Sum_probs=0.9
Q ss_pred CCCHHHHHHHHHHHHh---cCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYMA---TQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~---~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
..+++++++-+|..+. ...+..++|...|+++.|++|++++.+
T Consensus 148 ~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 148 MYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp HC--------------------------------------------
T ss_pred cCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 3556777777776543 357889999999999999999998764
No 328
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=55.13 E-value=18 Score=30.45 Aligned_cols=46 Identities=4% Similarity=0.049 Sum_probs=32.4
Q ss_pred CCCCHHHHH-HHHHHHHhc-CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKKT-LVALSYMAT-QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~l-~i~L~~L~~-g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..+++.+-. +..|+.-.. +.+..+||..++++++|+++++++....
T Consensus 154 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 154 LTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp CSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 346665543 333322221 3799999999999999999999987654
No 329
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=55.12 E-value=14 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
..+..+||...|+|.+||.|..+.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999999999999998886543
No 330
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=55.01 E-value=16 Score=33.29 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=26.9
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
....|..+|+..+|+|++|++++++++++.
T Consensus 51 ~~~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 51 KGPISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 446899999999999999999999998873
No 331
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=54.90 E-value=19 Score=24.67 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+-.+.-..-.++......|...|||++|+++.+++
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 33333333456678889999999999999987764
No 332
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=54.54 E-value=18 Score=29.49 Aligned_cols=29 Identities=3% Similarity=0.132 Sum_probs=25.3
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+.+..+|+..+|+|++|+++.++....
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~ 54 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEE 54 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999998887654
No 333
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=54.33 E-value=11 Score=29.88 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=26.5
Q ss_pred HHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 35 KTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 35 ~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.+.-.|..+ ..|.++.++|...|+|+++++++.+
T Consensus 11 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344444444 5689999999999999999998765
No 334
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=54.07 E-value=13 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=25.8
Q ss_pred cCCcHHHHHhhh--CCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQF--NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~f--gvs~stv~r~v~~~~~~ 73 (307)
...+..+||..+ |+|+++|++.++.....
T Consensus 26 g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 26 GNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 368999999999 99999999999987664
No 335
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=53.49 E-value=17 Score=25.85 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=31.2
Q ss_pred CCCHHH-HHHHHHHHHhcCCcHHHHHh-hhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEK-KTLVALSYMATQLSMRKIGD-QFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~-~l~i~L~~L~~g~~~~~l~~-~fgvs~stv~r~v~~~~~ 72 (307)
.++.-+ .++++|.... +.+..+|+. ..++.+||++|.+.-...
T Consensus 13 ~L~~~QfsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r 57 (95)
T 1bja_A 13 VLNEKTATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIK 57 (95)
T ss_dssp SSCHHHHHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344433 3444554444 899999999 999999999998887653
No 336
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=53.42 E-value=21 Score=28.63 Aligned_cols=29 Identities=7% Similarity=0.180 Sum_probs=24.7
Q ss_pred cCC--cHHHHHhhhCCC-hhhHHHHHHHHHHH
Q psy4300 45 TQL--SMRKIGDQFNLA-DSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~--~~~~l~~~fgvs-~stv~r~v~~~~~~ 73 (307)
.|. ++.++|..+|++ ++|++++++.+...
T Consensus 22 ~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~ 53 (202)
T 1jhf_A 22 TGMPPTRAEIAQRLGFRSPNAAEEHLKALARK 53 (202)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hCCCccHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 466 999999999999 99999998876553
No 337
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=53.41 E-value=18 Score=28.55 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 40 LSYMATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 40 L~~L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
|..++...++.++|..+|+|++|++++.+
T Consensus 14 l~~~r~~~tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 14 ICEAYGFSQKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp HHHHHTCSSHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhCcCHHHHHHHHh
Confidence 33333333999999999999999999876
No 338
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.48 E-value=39 Score=23.93 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYM--ATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...++.++.+.+-+..= ..|...++|....+++++++.+++.....
T Consensus 32 ~~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~ 79 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 79 (95)
T ss_dssp CCSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 46788999988888887 45689999999999999999999998754
No 339
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=52.46 E-value=35 Score=21.64 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.0
Q ss_pred CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
......|...|||++|+++.+++
T Consensus 34 gn~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Confidence 57889999999999999987764
No 340
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=52.43 E-value=15 Score=29.71 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHc
Q psy4300 29 FVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAM 74 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l 74 (307)
.++..+.- .|.+|..|.+..++|...++|..||...+.+...-|
T Consensus 159 ~Lt~rE~~--vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 159 KLTKREQQ--IIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp TSCHHHHH--HHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred cCCHHHHH--HHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 36666544 455688999999999999999999998888875444
No 341
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=52.15 E-value=18 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 39 ALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 39 ~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.|..|. ...|-.+|+...|+|++|++++++++++.
T Consensus 21 il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 444443 35899999999999999999999998874
No 342
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=51.63 E-value=14 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=31.7
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
++...|++..|...++|+|++|+.+++.-..+-..|
T Consensus 17 v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~~L 52 (303)
T 3isp_A 17 VVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVL 52 (303)
T ss_dssp HHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCCee
Confidence 334458999999999999999999999999998876
No 343
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=51.62 E-value=21 Score=31.21 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=28.8
Q ss_pred HHHHHHhcC--CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 38 VALSYMATQ--LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 38 i~L~~L~~g--~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
-.|..|..+ .+..+||..||||++|+.|-++...+.
T Consensus 9 ~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 9 KLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp HHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 344555443 788999999999999999999988764
No 344
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=51.34 E-value=23 Score=30.51 Aligned_cols=51 Identities=18% Similarity=0.114 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhh-CCChhhHHHHHHHHHHHcccc
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQF-NLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~f-gvs~stv~r~v~~~~~~l~~~ 77 (307)
...+....++++.|..=-.+.++.+++..| |.+++||...++.+-+.+.+-
T Consensus 254 ~~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g~~~~~tv~~~~~~~~~~~~~~ 305 (324)
T 1l8q_A 254 NKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKD 305 (324)
T ss_dssp CSSSHHHHHHHHHHHHHHHCCCHHHHHHHSSCCCSTHHHHHHHHHHHTTC--
T ss_pred CCccchHHHHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHHHHHHHhC
Confidence 445667888887776544469999999999 799999999999987766554
No 345
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=51.34 E-value=17 Score=30.11 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=31.6
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
++...|++..|...++|+|++|+.+++.-..+-..|
T Consensus 12 v~~~~s~t~AA~~L~isq~avS~~i~~LE~~lg~~L 47 (291)
T 3szp_A 12 VVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRL 47 (291)
T ss_dssp HHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCce
Confidence 344468999999999999999999999999988776
No 346
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=50.60 E-value=17 Score=26.93 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=24.1
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
....+..++|..+|+|.+++++.+++..
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457889999999999999999998863
No 347
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=50.30 E-value=32 Score=31.57 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHh--cCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSYMA--TQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L~--~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..++..+-..+...+-. .+.+..+|+...+++++|++++++++..
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46787765443333334 5689999999999999999999998764
No 348
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=50.15 E-value=14 Score=26.77 Aligned_cols=25 Identities=8% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
..+..+||...|+|.+||.|..+.+
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 5899999999999999988866553
No 349
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=49.41 E-value=18 Score=32.25 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=27.7
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
....|-.+|+...|+|++||++++++.++.
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 667999999999999999999999998874
No 350
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=49.07 E-value=3.6 Score=32.01 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=0.0
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
...|.++.++|...|+|++|++++-+
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp --------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35589999999999999999999843
No 351
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=48.70 E-value=13 Score=29.69 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=26.2
Q ss_pred HHHHHHHH--hcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 36 TLVALSYM--ATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 36 l~i~L~~L--~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.-.|..+ ..|.++.++|...|+|+++++++-+.
T Consensus 11 ~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 11 FAELLKDRREQVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34444433 56899999999999999999987653
No 352
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=48.38 E-value=18 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.228 Sum_probs=22.6
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
....+..++|..+|+|.+++++.+++
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34568899999999999999999876
No 353
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=48.27 E-value=34 Score=26.53 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcC---CcHHHHHhhhC-CChhhHHHHHHHHHHH
Q psy4300 34 KKTLVALSYMATQ---LSMRKIGDQFN-LADSTVWSCIDSFLTA 73 (307)
Q Consensus 34 ~~l~i~L~~L~~g---~~~~~l~~~fg-vs~stv~r~v~~~~~~ 73 (307)
.++.+.-..+.+. .+-.+|...++ +|++||++.++.+.++
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~ea 73 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDR 73 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 5555666666653 57788999998 9999999999987664
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.14 E-value=16 Score=27.30 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCcHHHHHhhh-----CCChhhHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQF-----NLADSTVWSCIDSFLT 72 (307)
Q Consensus 46 g~~~~~l~~~f-----gvs~stv~r~v~~~~~ 72 (307)
..+-.+|...+ ++|.+||+|.++.+.+
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 46777888877 8999999998887644
No 355
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=47.78 E-value=3.9 Score=36.41 Aligned_cols=36 Identities=11% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 36 TLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 36 l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
++..| +...+.+..+||..||+|++|++|.+++...
T Consensus 25 iL~~l-~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 25 ILRNI-YWMQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp -------------------------------------
T ss_pred HHHHH-HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33334 4456899999999999999999999987543
No 356
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=47.71 E-value=34 Score=27.86 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
....+.++-| -+++.|....+-++||...|+|++||+..++...+.
T Consensus 12 ~ls~s~EdYL-k~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~ 57 (200)
T 2p8t_A 12 YPEYTVEDVL-AVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHL 57 (200)
T ss_dssp --CCCHHHHH-HHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHH-HHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3445555444 556666777889999999999999999999987654
No 357
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=45.75 E-value=37 Score=25.73 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCHHHHHHH-HHHHHhc-----CCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 30 VPVEKKTLV-ALSYMAT-----QLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 30 ~~~~~~l~i-~L~~L~~-----g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
++.....++ +|.+|+. ..+-.+||..+++|++++.+++.....+
T Consensus 6 ls~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 6 ISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp -CHHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444444444 4555653 2678899999999999999999887554
No 358
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=45.69 E-value=37 Score=24.04 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=22.9
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
-.++......|...|||++|+++.+++
T Consensus 68 ~~~~gn~~~AA~~LGIsR~TL~rkLkk 94 (98)
T 1eto_A 68 QYTLGNQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp HHTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 356778889999999999999988765
No 359
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=45.59 E-value=13 Score=28.80 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+.|.++|+...|||++|+++++..=
T Consensus 23 ~~s~~~IA~~agvsk~t~Y~~F~sK 47 (190)
T 3vpr_A 23 ATSVQDLAQALGLSKAALYHHFGSK 47 (190)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 5799999999999999998877643
No 360
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=45.30 E-value=35 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.8
Q ss_pred cCCcHHHHHhhh-----CCChhhHHHHHHHH
Q psy4300 45 TQLSMRKIGDQF-----NLADSTVWSCIDSF 70 (307)
Q Consensus 45 ~g~~~~~l~~~f-----gvs~stv~r~v~~~ 70 (307)
.-.++.+|+..+ +||++|++|-+++.
T Consensus 18 ~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 18 DIETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 347899999998 99999999998875
No 361
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=44.74 E-value=65 Score=22.55 Aligned_cols=40 Identities=3% Similarity=-0.081 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCC---cHHHHHhhhCC-ChhhHHHHHHHHH
Q psy4300 32 VEKKTLVALSYMATQL---SMRKIGDQFNL-ADSTVWSCIDSFL 71 (307)
Q Consensus 32 ~~~~l~i~L~~L~~g~---~~~~l~~~fgv-s~stv~r~v~~~~ 71 (307)
...++-.+...|..+. +..++|...|- +.+..++.+++..
T Consensus 52 ~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 95 (108)
T 3mn2_A 52 KRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMF 95 (108)
T ss_dssp HHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3556677777887765 89999999986 5677888887754
No 362
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=44.61 E-value=35 Score=28.02 Aligned_cols=43 Identities=14% Similarity=0.398 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMAT----QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~----g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+...+-+.-+-.++..+.. +.|.+.|+...|||++|++++|..
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~ 49 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGN 49 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred CCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcCC
Confidence 3456666666666666642 489999999999999999988764
No 363
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=44.49 E-value=11 Score=29.57 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=19.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCI 67 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v 67 (307)
+.|.++||...|||++|+++++
T Consensus 32 ~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 32 AVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccHHHHHHHcCCCHHHHHHHC
Confidence 5899999999999999976643
No 364
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=44.39 E-value=17 Score=29.88 Aligned_cols=25 Identities=8% Similarity=0.286 Sum_probs=21.7
Q ss_pred cHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+-.+|+..||||++||...+.....
T Consensus 33 sE~eLa~~~gVSR~tVReAL~~L~~ 57 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRLAR 57 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5789999999999999998887653
No 365
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=44.35 E-value=17 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.2
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+.++|+..||||++||.+.+......
T Consensus 35 Pse~~La~~~~vSr~tvr~Al~~L~~~ 61 (243)
T 2wv0_A 35 PSEREYAEQFGISRMTVRQALSNLVNE 61 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 367899999999999999999887653
No 366
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=44.32 E-value=62 Score=22.41 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhc-CCcHHHHHhhhCC-ChhhHHHHHHHHH
Q psy4300 33 EKKTLVALSYMAT-QLSMRKIGDQFNL-ADSTVWSCIDSFL 71 (307)
Q Consensus 33 ~~~l~i~L~~L~~-g~~~~~l~~~fgv-s~stv~r~v~~~~ 71 (307)
..++..+...|.. +.+..++|..+|- +.+..++.+++..
T Consensus 54 ~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~ 94 (103)
T 3lsg_A 54 QKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYY 94 (103)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4556666666654 6789999999986 6778888887654
No 367
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=43.78 E-value=18 Score=30.02 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=22.5
Q ss_pred cHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+-++|+..||||+.||.+.+.....
T Consensus 35 se~~La~~~~vSr~tvr~Al~~L~~ 59 (236)
T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLVE 59 (236)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999998765
No 368
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=43.61 E-value=4.9 Score=34.66 Aligned_cols=43 Identities=2% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 36 TLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 36 l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
|-.++....+|.|++..|...++|+|++|+.+++.-..+-..|
T Consensus 6 L~~F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~~L 48 (324)
T 1al3_A 6 LRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQI 48 (324)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCCEE
Confidence 4444444555559999999999999999999999988877665
No 369
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=43.17 E-value=19 Score=30.21 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHH----HhcC---CcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 29 FVPVEKKTLVALSY----MATQ---LSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 29 ~~~~~~~l~i~L~~----L~~g---~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
..+.-+++.-.|.. +.-| .+-++|+..||||+.||.+.+.....
T Consensus 12 ~~~~y~~i~~~l~~~I~~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 62 (248)
T 3f8m_A 12 RILKHQVVRAELDRMLDGMRIGDPFPAEREIAEQFEVARETVRQALRELLI 62 (248)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455555444443 4444 36789999999999999998887654
No 370
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.66 E-value=66 Score=22.55 Aligned_cols=39 Identities=8% Similarity=-0.005 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHh-cCCcHHHHHhhhCC-ChhhHHHHHHHHH
Q psy4300 33 EKKTLVALSYMA-TQLSMRKIGDQFNL-ADSTVWSCIDSFL 71 (307)
Q Consensus 33 ~~~l~i~L~~L~-~g~~~~~l~~~fgv-s~stv~r~v~~~~ 71 (307)
..++-.+...|. ++.+..++|..+|- +.+..++.+++..
T Consensus 56 ~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 96 (108)
T 3oou_A 56 RYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHT 96 (108)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHh
Confidence 445666666664 46899999999997 7778888887754
No 371
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=42.61 E-value=13 Score=28.84 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHh----cCCcHHHHHhhhCCChhhHHHHHHHHHHHc
Q psy4300 32 VEKKTLVALSYMA----TQLSMRKIGDQFNLADSTVWSCIDSFLTAM 74 (307)
Q Consensus 32 ~~~~l~i~L~~L~----~g~~~~~l~~~fgvs~stv~r~v~~~~~~l 74 (307)
..+-|-.++..+. .+.|.++||...|||++|+++++..=-+.+
T Consensus 9 ~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~ 55 (192)
T 2zcm_A 9 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIY 55 (192)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCCHHHHH
Confidence 3344444444442 248999999999999999888665433333
No 372
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=42.55 E-value=20 Score=23.84 Aligned_cols=24 Identities=8% Similarity=0.320 Sum_probs=21.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
..+..++|..+|||++++.+.+++
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 457889999999999999988766
No 373
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.14 E-value=16 Score=28.86 Aligned_cols=32 Identities=3% Similarity=0.049 Sum_probs=24.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++||...|||++|+++++..=-+.+...
T Consensus 28 ~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v 59 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAYYGNKGELFASV 59 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 58999999999999999988876544433333
No 374
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=42.04 E-value=20 Score=29.78 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.7
Q ss_pred cHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+-++||..||||++||.+.+.....
T Consensus 31 se~~La~~~~vSr~tvr~Al~~L~~ 55 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLEQ 55 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999998887654
No 375
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=41.49 E-value=33 Score=28.22 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMAT----QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~----g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+...+-+.-|-.++..+.. +.|.++|+...|||++|++++|..
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~ 72 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRN 72 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSS
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcCC
Confidence 4567777777778877754 379999999999999999987764
No 376
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=41.13 E-value=21 Score=30.48 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHH-Hhc-----C---CcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 28 PFVPVEKKTLVALSY-MAT-----Q---LSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~-L~~-----g---~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
...+.-+++.-.|.. +.+ | .+-++|+..||||+.||.+.+.....
T Consensus 26 ~~~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 79 (272)
T 3eet_A 26 GEQPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMA 79 (272)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345666666666653 222 2 27889999999999999998887654
No 377
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.02 E-value=17 Score=28.66 Aligned_cols=24 Identities=8% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 31 ~ts~~~IA~~aGvsk~tlY~~F~s 54 (202)
T 2i10_A 31 GTSITDLTKALGINPPSLYAAFGS 54 (202)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred cCCHHHHHHHhCCChHHHHHHhCC
Confidence 589999999999999998887753
No 378
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=40.97 E-value=37 Score=23.09 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhCCChh-hHHHHHHHHHH
Q psy4300 32 VEKKTLVALSYMATQLSMRKIGDQFNLADS-TVWSCIDSFLT 72 (307)
Q Consensus 32 ~~~~l~i~L~~L~~g~~~~~l~~~fgvs~s-tv~r~v~~~~~ 72 (307)
..++++..|...+ +.+-.+||..+|++.. +|.+.+.....
T Consensus 12 ~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 12 IKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3455554443333 5788999999999999 98888877654
No 379
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=40.53 E-value=18 Score=28.70 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+.|.++|+...|||++|+++++..=
T Consensus 32 ~ts~~~IA~~aGvsk~tlY~~F~sK 56 (211)
T 3bhq_A 32 GTSMEEIATKAGASKQTVYKHFTDK 56 (211)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 5899999999999999999887643
No 380
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=40.50 E-value=13 Score=28.50 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.|.++|+...|||++|+++++.
T Consensus 22 ~~s~~~Ia~~agvskgtlY~~F~ 44 (179)
T 2eh3_A 22 GTSVEEIVKRANLSKGAFYFHFK 44 (179)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cCCHHHHHHHhCCCcHHHHHHcC
Confidence 48999999999999999877654
No 381
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=40.28 E-value=7 Score=29.20 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.0
Q ss_pred cHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 48 SMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 48 ~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
+.++||..||||++||.+.+.....
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQS 61 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999887653
No 382
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=40.17 E-value=18 Score=28.54 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++||...|||++|+++++..=-+.+...
T Consensus 37 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 68 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLIRYYFGSKEKLFSTM 68 (218)
T ss_dssp CCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 38999999999999999999987555544444
No 383
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=39.89 E-value=14 Score=28.26 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=24.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..--+.+...
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIYLYFKNKDELLEQF 59 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHHcCCHHHHHHHH
Confidence 48999999999999999998776544444333
No 384
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.80 E-value=36 Score=26.01 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=22.6
Q ss_pred cCCcHHHHHhhh-----CCChhhHHHHHHHHHHH
Q psy4300 45 TQLSMRKIGDQF-----NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 45 ~g~~~~~l~~~f-----gvs~stv~r~v~~~~~~ 73 (307)
...+-.+|...+ ++|.+||+|.++.+.+.
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 346777888776 89999999988877543
No 385
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=39.48 E-value=15 Score=28.42 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=25.8
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.+.|.++|+...|||++|++++|..=-+.+...
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 63 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRAL 63 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 679999999999999999988776544444333
No 386
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.43 E-value=25 Score=29.57 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCCCHHHH-HHHHHHHH-hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 28 PFVPVEKK-TLVALSYM-ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 28 ~~~~~~~~-l~i~L~~L-~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
-.++..+- ++..||.- ..|.+..+|+..++++.+|+.+++++....
T Consensus 30 ~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~ 77 (250)
T 1p4x_A 30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKH 77 (250)
T ss_dssp CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 45777764 33333322 136899999999999999999999987653
No 387
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=39.33 E-value=16 Score=28.19 Aligned_cols=32 Identities=3% Similarity=-0.047 Sum_probs=25.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..--+.+...
T Consensus 22 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 53 (194)
T 3bqz_B 22 ATTTGEIVKLSESSKGNLYYHFKTKENLFLEI 53 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHhCCCHHHHHHHH
Confidence 48999999999999999998877554444444
No 388
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=39.16 E-value=15 Score=28.72 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=25.3
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++||...|||++|+++++..=-+.+...
T Consensus 32 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 63 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYNYFVDKEDILKNL 63 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCHHHHHHHH
Confidence 48999999999999999988776544444444
No 389
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=39.03 E-value=20 Score=28.10 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=32.2
Q ss_pred CHHHHHHHHHH-HHh----cCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 31 PVEKKTLVALS-YMA----TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 31 ~~~~~l~i~L~-~L~----~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
...++++-+.. .+. .+.|.++|+...|||++|+++++..=-+.+...
T Consensus 16 ~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 67 (213)
T 2qtq_A 16 GARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKAL 67 (213)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHH
Confidence 34455444443 332 258999999999999999999887655444444
No 390
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=38.76 E-value=19 Score=28.21 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=23.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAM 74 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l 74 (307)
+.|.++|+...|||++|+++++..=-+.+
T Consensus 32 ~~s~~~IA~~aGvs~~tlY~~F~sKe~L~ 60 (197)
T 2hyt_A 32 DTSMDDLTAQASLTRGALYHHFGDKKGLL 60 (197)
T ss_dssp TCCHHHHHHHHTCCTTHHHHHHSSHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 58999999999999999998876433333
No 391
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=38.71 E-value=27 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=30.1
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+..=|.++|..++.+.|.|-|.++..++..|..
T Consensus 47 tK~LYp~IA~k~~TT~s~VEraIR~aIe~aw~~ 79 (120)
T 1fc3_A 47 TKVLYPDIAKKYNTTASRVERAIRHAIEVAWSR 79 (120)
T ss_dssp TTTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHC
Confidence 345689999999999999999999999999987
No 392
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=38.62 E-value=13 Score=28.60 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=24.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++|+...|||++|+++++..=-+.+...
T Consensus 30 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 61 (191)
T 3on4_A 30 AFSFKDIATAINIKTASIHYHFPSKEDLGVAV 61 (191)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchhhhcCCCHHHHHHHH
Confidence 48999999999999999988776544433333
No 393
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=38.43 E-value=15 Score=29.14 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCI 67 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v 67 (307)
+.|.++||...|||++|+++++
T Consensus 31 ~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2wui_A 31 TTAMADLADAAGVSRGAVYGHY 52 (210)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCHHHHHHHhCCCHHHHHHHc
Confidence 4899999999999999976643
No 394
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=38.37 E-value=15 Score=28.75 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.8
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++||...|||++|++.+|..
T Consensus 30 ~~s~~~IA~~aGvs~gtlY~yF~s 53 (194)
T 2nx4_A 30 AANMRDIATEAGYTNGALSHYFAG 53 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cCCHHHHHHHhCCCcchHHHhCcC
Confidence 589999999999999998876643
No 395
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=38.31 E-value=55 Score=28.60 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=26.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMS 75 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~ 75 (307)
..|-.+||..||||+++|++.++.....=+
T Consensus 19 ~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 19 YISGQSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 478889999999999999999998876543
No 396
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=38.30 E-value=15 Score=28.24 Aligned_cols=31 Identities=6% Similarity=0.005 Sum_probs=24.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
+.|.++||...|||++|+++++..=-+.+..
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~ 57 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFNGKENLYYE 57 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHSSHHHHHHH
T ss_pred cCCHHHHHHHhCCChhhhhhhcCCHHHHHHH
Confidence 4899999999999999999988654333333
No 397
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=38.28 E-value=99 Score=21.51 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHh-cCCcHHHHHhhhCC-ChhhHHHHHHHHH
Q psy4300 33 EKKTLVALSYMA-TQLSMRKIGDQFNL-ADSTVWSCIDSFL 71 (307)
Q Consensus 33 ~~~l~i~L~~L~-~g~~~~~l~~~fgv-s~stv~r~v~~~~ 71 (307)
..++..+...|. ++.+..++|...|- +.+..++.+++..
T Consensus 55 ~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 95 (107)
T 2k9s_A 55 DQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCT 95 (107)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666666665 67888888888885 4567777777653
No 398
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=38.27 E-value=14 Score=28.11 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.5
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~s 47 (170)
T 3egq_A 24 EVSIEEIAREAKVSKSLIFYHFES 47 (170)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred cCcHHHHHHHhCCCchhHHHHcCC
Confidence 379999999999999998876554
No 399
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.94 E-value=45 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCcHHHHHhhh-----CCChhhHHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQF-----NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 46 g~~~~~l~~~f-----gvs~stv~r~v~~~~~~ 73 (307)
..+-.+|...+ ++|.+||+|.++.+.+.
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 46778888877 89999999998877554
No 400
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=37.38 E-value=14 Score=28.66 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.3
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
+.+.++|+...|||++|+++++..=-+.+..
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKEGLYAA 58 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 4899999999999999998877654333333
No 401
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=37.19 E-value=16 Score=28.05 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=25.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..--+.+...
T Consensus 29 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 60 (195)
T 3ppb_A 29 GTSTATIAREAGVATGTLFHHFPSKEQLLEQL 60 (195)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCHHHHHHHH
Confidence 48999999999999999998776544444444
No 402
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=36.89 E-value=16 Score=28.64 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=20.8
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 29 ~~t~~~Ia~~Agvs~gt~Y~yF~s 52 (204)
T 3anp_C 29 ETTATEIAKAAHVSRGTFFNYYPY 52 (204)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred cccHHHHHHHcCCchHHHHHHcCC
Confidence 489999999999999998876653
No 403
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=36.77 E-value=16 Score=28.13 Aligned_cols=32 Identities=3% Similarity=0.083 Sum_probs=25.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..=-+.+...
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 65 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFGDKENLFLAL 65 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHHCCCchHHHHHCCCHHHHHHHH
Confidence 38999999999999999999887655554444
No 404
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=36.77 E-value=17 Score=28.79 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=20.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.|.++|+...|||++|++.+|.
T Consensus 30 ~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 30 RTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCS
T ss_pred cCCHHHHHHHHCcCHHHHHHHCC
Confidence 58999999999999999877654
No 405
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=36.77 E-value=11 Score=29.33 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=24.9
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
+...+..+||..||+|++++.+.+.+....
T Consensus 25 ~~~ls~~eLa~~lgvSr~~vr~al~~L~~~ 54 (163)
T 2gqq_A 25 DGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp CSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444789999999999999999888876544
No 406
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=36.58 E-value=19 Score=28.52 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=21.5
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|++++|..
T Consensus 35 ~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 35 ALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred cCCHHHHHHHhCCCHHHHHHhCCC
Confidence 489999999999999999988764
No 407
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=36.44 E-value=19 Score=28.27 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=21.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 27 ~ts~~~IA~~aGvs~gtlY~~F~s 50 (197)
T 2gen_A 27 ATTIEMIRDRSGASIGSLYHHFGN 50 (197)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHCCChHHHHHHCCC
Confidence 489999999999999998887653
No 408
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=36.41 E-value=45 Score=25.69 Aligned_cols=32 Identities=6% Similarity=0.135 Sum_probs=26.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++|+...|||++|++++|..--+.+...
T Consensus 27 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 58 (195)
T 2dg7_A 27 NVTVTDIAERAGLTRRSYFRYFPDKREVLFGG 58 (195)
T ss_dssp GCCHHHHHHHTTCCHHHHHHHCSSTTGGGTTT
T ss_pred ccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 48999999999999999999887655555444
No 409
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=36.33 E-value=17 Score=28.58 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=25.3
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..--+.+...
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 65 (220)
T 3lhq_A 34 ATSLAEIANAAGVTRGAIYWHFKNKSDLFSEI 65 (220)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCceeehhhcCCHHHHHHHH
Confidence 47999999999999999998876544444444
No 410
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=36.25 E-value=17 Score=28.12 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
+.+.++|+...|||++|++++|..--+.+..
T Consensus 28 ~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a 58 (194)
T 3dpj_A 28 QTSFVDISAAVGISRGNFYYHFKTKDEILAE 58 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred cCCHHHHHHHHCCChHHHHHHcCCHHHHHHH
Confidence 5899999999999999988877644333333
No 411
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=36.19 E-value=16 Score=28.85 Aligned_cols=24 Identities=4% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 31 ~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2xdn_A 31 RTTLADIAELAGVTRGAIYWHFNN 54 (210)
T ss_dssp TCCHHHHHHHHTCCTTHHHHHCSS
T ss_pred cCcHHHHHHHHCCChHHHHHHhCC
Confidence 589999999999999998776543
No 412
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=36.15 E-value=17 Score=28.47 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.|.++|+...|||++|+++++.
T Consensus 30 ~~s~~~Ia~~Agvskgt~Y~yF~ 52 (197)
T 2f07_A 30 KASISDIVKKAGTAQGTFYLYFS 52 (197)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCS
T ss_pred cCCHHHHHHHhCCCchHHHHhCC
Confidence 48999999999999999877654
No 413
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=35.87 E-value=18 Score=28.48 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 34 ~~s~~~IA~~agvs~~tlY~~F~s 57 (204)
T 2ibd_A 34 ATTVRDIADAAGILSGSLYHHFDS 57 (204)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCSC
T ss_pred hcCHHHHHHHhCCCchhHHHhcCC
Confidence 589999999999999998877654
No 414
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=35.57 E-value=18 Score=28.41 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=24.8
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..=-+.+...
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 65 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYHYFESKEAFGCEL 65 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHCCCHHHHHHHH
Confidence 58999999999999999988776544443333
No 415
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=35.56 E-value=18 Score=28.12 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=24.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++|+...|||++|+++++..--+.+...
T Consensus 37 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 68 (206)
T 3kz9_A 37 RGGHADIAEIAQVSVATVFNYFPTREDLVDEV 68 (206)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHH
T ss_pred cccHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 38999999999999999888776544444333
No 416
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=35.43 E-value=16 Score=28.13 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++|+...|||++|+++++..--+.+...
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (194)
T 2g7s_A 28 SFSYADISQVVGIRNASIHHHFPSKSDLVCKL 59 (194)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchHHHHHcCCHHHHHHHH
Confidence 48999999999999999988876544444444
No 417
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=35.39 E-value=19 Score=28.25 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=23.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
+.|.++|+...|||++|+++++..--+.+..
T Consensus 38 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 68 (212)
T 1pb6_A 38 GTRLEQIAELAGVSKTNLLYYFPSKEALYIA 68 (212)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHSSSHHHHHHH
T ss_pred hhhHHHHHHHHCCChhHHHHhCCCHHHHHHH
Confidence 5899999999999999988876543333333
No 418
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=35.10 E-value=59 Score=25.17 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHH--h---cCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 28 PFVPVEKKTLVALSYM--A---TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~L--~---~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.-...++++-+..-| . .+.+.++|+...|||++|+++++..--+.+...
T Consensus 14 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 68 (207)
T 2rae_A 14 RPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGD 68 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCS
T ss_pred chHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCCHHHHHHHH
Confidence 3344555555444433 2 248999999999999999998887655555444
No 419
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=34.98 E-value=14 Score=27.94 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=20.8
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.+.++|+...|||++|+++++..
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 34 KMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hcCHHHHHHHHCCCHHHHHHHCCC
Confidence 379999999999999998887654
No 420
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=34.84 E-value=29 Score=28.09 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=31.4
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHH-Hccccc-cccccccCCChHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLT-AMSQPQ-IQCQYIKWPTEEESV 93 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~-~l~~~l-~~~~~i~~P~~~~~~ 93 (307)
.+-.+|+..||||+++|...+..... -+.+.. -...++.-++.++..
T Consensus 36 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ 84 (218)
T 3sxy_A 36 LNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIR 84 (218)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHHHH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHHHHH
Confidence 56789999999999999999987653 343331 012356666654443
No 421
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=34.71 E-value=19 Score=27.94 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=23.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
+.|.++|+...|||++|+++++..--+.+..
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 54 (185)
T 2yve_A 24 TLSYDSLAEATGLSKSGLIYHFPSRHALLLG 54 (185)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHCSSHHHHHHH
T ss_pred hccHHHHHHHhCCChHHHHHhCcCHHHHHHH
Confidence 4899999999999999998876654333333
No 422
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=34.65 E-value=16 Score=28.99 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=20.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.|.++|+...|||++|++++|.
T Consensus 42 ~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 42 RVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cCCHHHHHHHhCCCHHHHHHHCC
Confidence 37999999999999999888664
No 423
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=34.50 E-value=32 Score=28.51 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=23.6
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+..+|+..||||++||.+.+......
T Consensus 50 L~e~~La~~lgVSr~~VReAL~~L~~~ 76 (237)
T 3c7j_A 50 LRQQELATLFGVSRMPVREALRQLEAQ 76 (237)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 688899999999999999999986543
No 424
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.30 E-value=45 Score=26.24 Aligned_cols=33 Identities=9% Similarity=-0.050 Sum_probs=26.5
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.+.|.++|+...|||++|++++|..=-+.+...
T Consensus 38 ~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~ 70 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYGSKERLFVEV 70 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 469999999999999999999887554444444
No 425
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=34.30 E-value=32 Score=28.71 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHccccc
Q psy4300 35 KTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQ 78 (307)
Q Consensus 35 ~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l 78 (307)
++-+++....+ .|+...|...|+|+|++++.++++.+.+-..|
T Consensus 24 ~l~~f~~v~~~-gs~~~aa~~l~~s~~~~s~~i~~le~~lg~~L 66 (265)
T 1b9m_A 24 RISLLKHIALS-GSISQGAKDAGISYKSAWDAINEMNQLSEHIL 66 (265)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCe
Confidence 34444444444 58999999999999999999999999987765
No 426
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=34.17 E-value=17 Score=28.34 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=25.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++|+...|||++|+++++..--+.+...
T Consensus 29 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 60 (193)
T 2dg8_A 29 RVSHRRIAQRAGVPLGSMTYHFTGIEQLLREA 60 (193)
T ss_dssp GCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHH
T ss_pred hccHHHHHHHhCCCchhhheeCCCHHHHHHHH
Confidence 48999999999999999988776544444444
No 427
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=34.15 E-value=20 Score=27.82 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.5
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|++++|..--+.+...
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 65 (203)
T 3f1b_A 34 ETSMDAIAAKAEISKPMLYLYYGSKDELFAAC 65 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHH
T ss_pred cccHHHHHHHhCCchHHHHHHhCCHHHHHHHH
Confidence 58999999999999999988765444443333
No 428
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=33.96 E-value=17 Score=28.19 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHh----cCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 32 VEKKTLVALSYMA----TQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 32 ~~~~l~i~L~~L~----~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
-+.-|-.++..+. .+.|.++|+...|||++|++++|..--+.+...
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~ 59 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRM 59 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 3334444444443 248999999999999999999887554444444
No 429
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=33.93 E-value=20 Score=28.57 Aligned_cols=24 Identities=0% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++||...|||++|++++|..
T Consensus 44 ~~s~~~IA~~aGvskgtlY~yF~s 67 (214)
T 2oer_A 44 RFTTARVAERAGVSIGSLYQYFPN 67 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cccHHHHHHHhCCCCchHHHhCCC
Confidence 489999999999999998887654
No 430
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=33.90 E-value=17 Score=28.30 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=20.5
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 37 ~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 37 AMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hccHHHHHHHhCCCHHHHHHHcCC
Confidence 589999999999999998776543
No 431
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.79 E-value=19 Score=28.60 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=20.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|++.+|..
T Consensus 29 ~~s~~~IA~~aGvs~gtlY~yF~s 52 (209)
T 2gfn_A 29 AVTTRAVAEESGWSTGVLNHYFGS 52 (209)
T ss_dssp GCCHHHHHHHHSSCHHHHHHHTSS
T ss_pred cCCHHHHHHHHCCCcchHHhcCCC
Confidence 589999999999999998876653
No 432
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.76 E-value=17 Score=28.76 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.5
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+.|.++||...|||++|+++++..=
T Consensus 28 ~~s~~~IA~~AGvs~gt~Y~yF~sK 52 (206)
T 1vi0_A 28 QSQVSKIAKQAGVADGTIYLYFKNK 52 (206)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCH
Confidence 4899999999999999988876543
No 433
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=33.39 E-value=62 Score=25.72 Aligned_cols=36 Identities=8% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.++...+..+++...|+++.|+.+..+++...+...
T Consensus 161 ~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~~~ 196 (200)
T 1ais_B 161 LEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKIK 196 (200)
T ss_dssp HTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred HhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcCCC
Confidence 345567899999999999999999999988877544
No 434
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=33.31 E-value=1e+02 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhc-CCcHHHHHhhhCC-ChhhHHHHHHHHH
Q psy4300 33 EKKTLVALSYMAT-QLSMRKIGDQFNL-ADSTVWSCIDSFL 71 (307)
Q Consensus 33 ~~~l~i~L~~L~~-g~~~~~l~~~fgv-s~stv~r~v~~~~ 71 (307)
..++..+...|.+ +.+..+||..+|- +.+..++.+++..
T Consensus 58 ~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~ 98 (113)
T 3oio_A 58 ELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHF 98 (113)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3455556666654 6788888888885 5666777777653
No 435
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.30 E-value=34 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=22.1
Q ss_pred CCcHHHHHhhh-----CCChhhHHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQF-----NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 46 g~~~~~l~~~f-----gvs~stv~r~v~~~~~~ 73 (307)
..+-.+|...+ ++|.+||+|.++.+.+.
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 46777887776 89999999988877543
No 436
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=33.26 E-value=20 Score=28.21 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=24.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++|+...|||++|+++++..=-+.+...
T Consensus 31 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 62 (216)
T 3f0c_A 31 KTTMNEIASDVGMGKASLYYYFPDKETLFEAV 62 (216)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 48999999999999999888776544444333
No 437
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=33.16 E-value=14 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=18.4
Q ss_pred CCcHHHHHhhhCCChhhHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSC 66 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~ 66 (307)
+.|.++||...|||++|++++
T Consensus 34 ~~s~~~IA~~agvsk~tlY~y 54 (199)
T 3crj_A 34 DLTIQRIADEYGKSTAAVHYY 54 (199)
T ss_dssp TCCHHHHHHHHTSCHHHHHTT
T ss_pred cCCHHHHHHHhCCChhHHhhh
Confidence 589999999999999996653
No 438
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=32.99 E-value=21 Score=27.96 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++||...|||++|+++++..=-+.+...
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 63 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQALVVAV 63 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHH
Confidence 58999999999999999998876544444333
No 439
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=32.85 E-value=18 Score=28.55 Aligned_cols=24 Identities=4% Similarity=0.315 Sum_probs=20.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 23 ~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 23 TITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCC
Confidence 489999999999999998876654
No 440
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=32.60 E-value=14 Score=28.56 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++||...|||++|+++++..
T Consensus 27 ~~t~~~IA~~agvs~~t~Y~~F~s 50 (199)
T 3qbm_A 27 GTAISDIMAATGLEKGGIYRHFES 50 (199)
T ss_dssp TCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred cCCHHHHHHHhCCCccHHHHhCCC
Confidence 589999999999999998775543
No 441
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.57 E-value=19 Score=28.59 Aligned_cols=30 Identities=3% Similarity=0.162 Sum_probs=23.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMS 75 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~ 75 (307)
+.|.++|+...|||++|++++|..=-+.+.
T Consensus 23 ~~s~~~IA~~AGvskgtlY~hF~sKe~L~~ 52 (208)
T 2g3b_A 23 GLRVNDVAEVAGVSPGLLYYHFKDRIGLLE 52 (208)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHCSHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 589999999999999998887764333333
No 442
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=32.50 E-value=19 Score=28.19 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.5
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..=-+.+...
T Consensus 28 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 59 (199)
T 2o7t_A 28 SLTMENIAEQAGVGVATLYRNFPDRFTLDMAC 59 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 37999999999999999988776544444333
No 443
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=32.44 E-value=21 Score=27.75 Aligned_cols=32 Identities=6% Similarity=0.167 Sum_probs=24.5
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++||...|||++|+++++..--+.+...
T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~ 63 (189)
T 3vp5_A 32 EAKIMHIVKALDIPRGSFYQYFEDLKDAYFYV 63 (189)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cccHHHHHHHhCCChHHHHHHCCCHHHHHHHH
Confidence 47999999999999999998776544444333
No 444
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=32.44 E-value=19 Score=28.53 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.+.++||...|||++|+++++..
T Consensus 43 ~~t~~~IA~~agvs~~t~Y~~F~s 66 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTLYKWWPS 66 (214)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCC
Confidence 489999999999999998776543
No 445
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=32.42 E-value=19 Score=28.32 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=24.8
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++||...|||++|+++++..=-+.+...
T Consensus 25 ~~s~~~IA~~AgvskgtlY~yF~sKe~L~~~~ 56 (202)
T 2id6_A 25 RATTDEIAEKAGVAKGLIFHYFKNKEELYYQA 56 (202)
T ss_dssp HCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 48999999999999999998886544433333
No 446
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.38 E-value=19 Score=28.43 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.|.++|+...|||++|++++|.
T Consensus 29 ~~s~~~IA~~AGvs~gtlY~~F~ 51 (203)
T 2np5_A 29 GASVREVAKRAGVSIGAVQHHFS 51 (203)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCS
T ss_pred hccHHHHHHHhCCCHHHHHHHcC
Confidence 48999999999999999877654
No 447
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=32.09 E-value=57 Score=24.74 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=23.3
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
.+-.+||..+++|.+++.+++.....+
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 688899999999999999988877553
No 448
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=32.05 E-value=36 Score=27.41 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.7
Q ss_pred hcCCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 44 ATQLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 44 ~~g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+...+..+++..+|++..|+.+..+.+.+.+...
T Consensus 157 ~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 157 AEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 4457788999999999999999999888776665
No 449
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=32.04 E-value=15 Score=28.98 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=19.1
Q ss_pred CCcHHHHHhhhCCChhhHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCI 67 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v 67 (307)
+.|.++|+...|||++|+++++
T Consensus 32 ~ts~~~IA~~agvs~gtlY~yF 53 (205)
T 1rkt_A 32 LTTMKDVVEESGFSRGGVYLYF 53 (205)
T ss_dssp TCCHHHHHHHHTSCHHHHHTTC
T ss_pred cCCHHHHHHHHCCCcchhhhhC
Confidence 5899999999999999976544
No 450
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=32.03 E-value=21 Score=28.06 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMS 75 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~ 75 (307)
+.+.++|+...|||++|+++++..=-+.+.
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 59 (216)
T 3s5r_A 30 ATTMAEIAASVGVNPAMIHYYFKTRDSLLD 59 (216)
T ss_dssp TCCHHHHHHTTTCCHHHHHHHCSSHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHcCCHHHHHH
Confidence 489999999999999998887654333333
No 451
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=32.03 E-value=22 Score=28.15 Aligned_cols=32 Identities=3% Similarity=-0.023 Sum_probs=24.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..=-+++...
T Consensus 50 ~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~ 81 (222)
T 3bru_A 50 SVGVDEILKAARVPKGSFYHYFRNKADFGLAL 81 (222)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCcHHHHHHHhCCCcchhhhhCCCHHHHHHHH
Confidence 48999999999999999988776544444333
No 452
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=32.03 E-value=25 Score=28.09 Aligned_cols=31 Identities=6% Similarity=0.160 Sum_probs=25.7
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.+.++|+...|||++|+++++..=-+.+...
T Consensus 60 ~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av 90 (214)
T 2guh_A 60 ITLKDIAEDAGVSAPLIIKYFGSKEQLFDAL 90 (214)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHSSHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 8999999999999999999987655555444
No 453
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=31.98 E-value=1.1e+02 Score=20.84 Aligned_cols=40 Identities=8% Similarity=0.166 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHH
Q psy4300 32 VEKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFL 71 (307)
Q Consensus 32 ~~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~ 71 (307)
.+++++=+|.-.+...+-.+|+...|+.+..|++.+.++-
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4888888999888999999999999999999999888764
No 454
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=31.71 E-value=22 Score=27.89 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=31.1
Q ss_pred CHHHHHHHHHH-HH-hc---CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 31 PVEKKTLVALS-YM-AT---QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 31 ~~~~~l~i~L~-~L-~~---g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
...++++-+.. .+ .. +.+.++|+...|||++|+++++..--+++...
T Consensus 31 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 82 (218)
T 3dcf_A 31 DRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAI 82 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 34555554444 33 22 47999999999999999988776544444443
No 455
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=31.62 E-value=1.8e+02 Score=24.88 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcC----CcHHHHHhhhCCChhhHHHHHHHHHHHcccccccc------------ccccCCChHHHHHHH
Q psy4300 33 EKKTLVALSYMATQ----LSMRKIGDQFNLADSTVWSCIDSFLTAMSQPQIQC------------QYIKWPTEEESVIIE 96 (307)
Q Consensus 33 ~~~l~i~L~~L~~g----~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~l~~~------------~~i~~P~~~~~~~~~ 96 (307)
-++|.-...||-.. -+...++..|++++||+++=+.-+-+.+...= .. .+|..-+.++.++++
T Consensus 6 ~~rl~~~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~~~-~~~~~~~~ga~gg~~~~~~~~~~~a~~~~ 84 (291)
T 1o57_A 6 SGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQG-IGTLLTVPGAAGGVKYIPKMKQAEAEEFV 84 (291)
T ss_dssp HHHHHHHHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-SEEEEEECSTTCEEEEEECCCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHhcC-CceEEEecCCCCceEEcccCCHHHHHHHH
Confidence 45666666666443 47899999999999999987774444444331 11 244444666666565
Q ss_pred HHHHH
Q psy4300 97 RNFRA 101 (307)
Q Consensus 97 ~~f~~ 101 (307)
+...+
T Consensus 85 ~~l~~ 89 (291)
T 1o57_A 85 QTLGQ 89 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 456
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=31.61 E-value=22 Score=28.34 Aligned_cols=23 Identities=4% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.|.++|+...|||++|++++|.
T Consensus 29 ~ts~~~IA~~AGvskgtlY~~F~ 51 (215)
T 1ui5_A 29 STTLSEIVAHAGVTKGALYFHFA 51 (215)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cCCHHHHHHHhCCCchhhHhhCC
Confidence 58999999999999999888765
No 457
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.60 E-value=17 Score=27.96 Aligned_cols=32 Identities=3% Similarity=0.041 Sum_probs=24.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH-HHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS-FLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~-~~~~l~~~ 77 (307)
+.|.++|+...|||++|+++++.. --+.+...
T Consensus 26 ~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~ 58 (191)
T 1sgm_A 26 ATGLNQIVKESGAPKGSLYHFFPNGKEELAIEA 58 (191)
T ss_dssp TCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHH
T ss_pred ccCHHHHHHHHCCCchhHHHHccccHHHHHHHH
Confidence 489999999999999998887764 44444433
No 458
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=31.59 E-value=35 Score=28.20 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=30.8
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHH-Hccccc-cccccccCCChHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLT-AMSQPQ-IQCQYIKWPTEEES 92 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~-~l~~~l-~~~~~i~~P~~~~~ 92 (307)
.+-.+|+..||||+++|...+..... -+.... -.-.+|.-++.++.
T Consensus 52 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~ 99 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDI 99 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCHHHH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeEEeCCCHHHH
Confidence 57889999999999999999987653 333331 01225665665443
No 459
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=31.52 E-value=23 Score=27.80 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHH--h-c---CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 32 VEKKTLVALSYM--A-T---QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 32 ~~~~l~i~L~~L--~-~---g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
.++++.-++.-| + . +.+.++|+...|||++|+++++..--+.+..
T Consensus 20 tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~ 70 (185)
T 3o60_A 20 TQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEV 70 (185)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 345566555555 4 2 4899999999999999998877654443333
No 460
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.32 E-value=36 Score=27.23 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHH---hcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 29 FVPVEKKTLVALSYM---ATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 29 ~~~~~~~l~i~L~~L---~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
..+-+.-|-.++..+ + +.|.++|+...|||++|++++|..
T Consensus 10 ~~~r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY~hF~~ 52 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIYHHAKG 52 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHTTSCH
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHHHHcCC
Confidence 455555555555544 5 899999999999999998876543
No 461
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=31.29 E-value=16 Score=28.51 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=20.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 31 ~~s~~~Ia~~agvs~~t~Y~~F~s 54 (203)
T 3b81_A 31 NTTLAFIINKLGISKGALYHYFSS 54 (203)
T ss_dssp TCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred cCcHHHHHHHhCCCchhHHHHcCC
Confidence 489999999999999997765543
No 462
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.26 E-value=26 Score=28.09 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+.+.++|+...|||++|++++|..-
T Consensus 60 ~~t~~~IA~~Agvs~~t~Y~~F~sK 84 (225)
T 2id3_A 60 ALDLGEIARRAGVGKTTVYRRWGTP 84 (225)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCCH
Confidence 4899999999999999988876543
No 463
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=31.24 E-value=18 Score=28.36 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=21.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++||...|||++|++++|..
T Consensus 38 ~~s~~~IA~~aGvs~~tlY~~F~s 61 (212)
T 3loc_A 38 GTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHSSS
T ss_pred cCCHHHHHHHHCcCHHHHhhhCCC
Confidence 489999999999999998887653
No 464
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=31.18 E-value=12 Score=28.95 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHh----cCCcHHHHHhhhCCChhhHHH
Q psy4300 30 VPVEKKTLVALSYMA----TQLSMRKIGDQFNLADSTVWS 65 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~----~g~~~~~l~~~fgvs~stv~r 65 (307)
.+-+.-|-.++..+. .+.|.++|+...|||++|+++
T Consensus 7 ~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~ 46 (178)
T 4hku_A 7 LSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYK 46 (178)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHH
Confidence 344444444544442 248999999999999999544
No 465
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.12 E-value=60 Score=25.16 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=22.5
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHH
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLT 72 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~ 72 (307)
.+-.+||..+++|++.+.+++.....
T Consensus 29 ~s~~~IA~~~~is~~~l~kil~~L~~ 54 (162)
T 3k69_A 29 VASRELAQSLHLNPVMIRNILSVLHK 54 (162)
T ss_dssp BCHHHHHHHHTSCGGGTHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68899999999999998888877644
No 466
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=31.04 E-value=13 Score=28.31 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.3
Q ss_pred CCcHHHHHhhhCCChhhHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWS 65 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r 65 (307)
+.|.++||...|||++|+++
T Consensus 32 ~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 32 KITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp TCCHHHHHHHHCCCHHHHTT
T ss_pred HhhHHHHHHHhCCcHhhHHH
Confidence 47899999999999999554
No 467
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=30.95 E-value=20 Score=27.92 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=24.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++|+...|||++|+++++..=-+.+...
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 66 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSRWGLLQAV 66 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCHHHHHHHH
Confidence 58999999999999999998776544444333
No 468
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=30.93 E-value=24 Score=28.16 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+.|.++|+...|||++|++++|..=
T Consensus 34 ~~s~~~IA~~AGvs~~tlY~~F~sK 58 (208)
T 3v6g_A 34 GLSHRRVAAEANVPVGSTTYYFNDL 58 (208)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCH
Confidence 4899999999999999988876543
No 469
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=30.80 E-value=21 Score=28.09 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMS 75 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~ 75 (307)
+.|.++||...|||++|++++|..--+.+.
T Consensus 32 ~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~ 61 (198)
T 3cjd_A 32 SLRARELARQADCAVGAIYTHFQDLNALTL 61 (198)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred hcCHHHHHHHhCCCccHHHHHhCCHHHHHH
Confidence 589999999999999998887654333333
No 470
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=30.76 E-value=17 Score=28.64 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.0
Q ss_pred CCcHHHHHhhhCCChhhHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWS 65 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r 65 (307)
+.|.++||...|||++|+++
T Consensus 29 ~~s~~~IA~~aGvsk~tlY~ 48 (203)
T 3cdl_A 29 ITSMDRIAARAEVSKRTVYN 48 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHT
T ss_pred hcCHHHHHHHhCCCHHHHHH
Confidence 58999999999999999655
No 471
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=30.69 E-value=27 Score=28.02 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=25.1
Q ss_pred ceeecceeEEeecCCCCccccccccCCcceeEEeeeCC
Q psy4300 109 IGAIDGCHIEGKFSKDIRNDYNNRKCTQSMILQGVCTS 146 (307)
Q Consensus 109 ~g~iDgt~i~i~~P~~~~~~y~~~k~~~s~~~q~v~d~ 146 (307)
.|++|....||. .||++++..+.++|++
T Consensus 38 aGAlDV~~tPi~----------MKKnRPg~~L~VLc~~ 65 (186)
T 3c19_A 38 EEVLACHAVPCV----------TKKNRPGHVLVVLVDG 65 (186)
T ss_dssp TTEEEEEEEEEE----------ETTTEEEEEEEEEEEC
T ss_pred CCCeEEEeeece----------EeCCCceEEEEEEECC
Confidence 579999999995 4789999999999998
No 472
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.42 E-value=21 Score=29.72 Aligned_cols=41 Identities=2% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCcHHHHHhhhCCChhhHHHHHHHHHHH
Q psy4300 33 EKKTLVALSYMATQLSMRKIGDQFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 33 ~~~l~i~L~~L~~g~~~~~l~~~fgvs~stv~r~v~~~~~~ 73 (307)
..++.+.-.......+..+|+..+|+|++|+++.++....+
T Consensus 12 ~~R~~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~a 52 (232)
T 2qlz_A 12 KVRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMERE 52 (232)
T ss_dssp HHHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
No 473
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=30.35 E-value=24 Score=28.17 Aligned_cols=32 Identities=6% Similarity=0.113 Sum_probs=24.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++||...|||++|++++|..=-+.+...
T Consensus 55 ~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~ 86 (221)
T 3g7r_A 55 SVGIDRITAEAQVTRATLYRHFSGKDDLILAY 86 (221)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHH
Confidence 48999999999999999988776444444333
No 474
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=30.31 E-value=26 Score=28.34 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.3
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|++++|..
T Consensus 27 ~ts~~~IA~~AGvs~~tlY~hF~s 50 (235)
T 2fbq_A 27 ETSLRLITSKAGVNLAAVNYHFGS 50 (235)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHTCS
T ss_pred ccCHHHHHHHhCCCHHHHHHHcCC
Confidence 589999999999999999887754
No 475
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=30.11 E-value=30 Score=27.33 Aligned_cols=31 Identities=10% Similarity=-0.113 Sum_probs=24.7
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
.|.++||...|||++|+++++..=-+.+...
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~sK~~L~~~~ 62 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFGSKEDLYLAC 62 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHSSHHHHHHHH
T ss_pred ccHHHHHHHhCCCHHHHHHhcCCHHHHHHHH
Confidence 8999999999999999999887544444433
No 476
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=30.10 E-value=23 Score=27.95 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=23.1
Q ss_pred HhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 43 MATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 43 L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
++...+..+++..||++.++|+++.+.
T Consensus 132 ~~~f~s~~eAa~~~Gvs~~tIs~~~~g 158 (174)
T 1u3e_M 132 EKEYPSTKCACEELGLTRGKVTDVLKG 158 (174)
T ss_dssp EEEESCHHHHHHHHTCCHHHHHHHHHT
T ss_pred EEeeCCHHHHHHHHCcCHhHhHHHHcC
Confidence 456678999999999999999998763
No 477
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=29.93 E-value=55 Score=25.87 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=24.1
Q ss_pred hcCCcHHHHHhhhC-CChhhHHHHHHHHHHH
Q psy4300 44 ATQLSMRKIGDQFN-LADSTVWSCIDSFLTA 73 (307)
Q Consensus 44 ~~g~~~~~l~~~fg-vs~stv~r~v~~~~~~ 73 (307)
....+-.+++..++ +|++|+|+.++...++
T Consensus 34 ~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 34 GRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 44678889999996 9999999888776543
No 478
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=29.32 E-value=26 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=25.3
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|++++|..--+++...
T Consensus 63 ~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~ 94 (229)
T 3bni_A 63 ALSTRAVALRADVPIGSVYRFFGNKRQMADAL 94 (229)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred hccHHHHHHHHCCCchhHHHHcCCHHHHHHHH
Confidence 48999999999999999998876544444444
No 479
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=29.22 E-value=38 Score=27.47 Aligned_cols=65 Identities=9% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHH------HhcC--CcHHHHHhhhCCChhhHHHHHHHHHH-Hccccc-cccccccCCChHHH
Q psy4300 28 PFVPVEKKTLVALSY------MATQ--LSMRKIGDQFNLADSTVWSCIDSFLT-AMSQPQ-IQCQYIKWPTEEES 92 (307)
Q Consensus 28 ~~~~~~~~l~i~L~~------L~~g--~~~~~l~~~fgvs~stv~r~v~~~~~-~l~~~l-~~~~~i~~P~~~~~ 92 (307)
.+-+..+++.-.|.- |.-| .+-.+|+..||||+++|...+..... -+.+.. -.-.++.-++.++.
T Consensus 13 ~~~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~~ 87 (222)
T 3ihu_A 13 ADGSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQET 87 (222)
T ss_dssp ---CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHH
Confidence 344555555555543 2222 56789999999999999999887653 233321 01224555555443
No 480
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=29.12 E-value=1.4e+02 Score=24.59 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=24.1
Q ss_pred HHhcCCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 42 YMATQLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 42 ~L~~g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
.+....+..++|..+|+|.+++++.+++
T Consensus 181 ~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 208 (276)
T 3gbg_A 181 DITRNWRWADICGELRTNRMILKKELES 208 (276)
T ss_dssp TTTSCCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred hhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3456689999999999999999999864
No 481
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=29.10 E-value=20 Score=27.54 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..=-+.+...
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYYEDKEQLLLAT 59 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHH
Confidence 48999999999999999998776544444443
No 482
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=29.10 E-value=15 Score=28.94 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=18.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCI 67 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v 67 (307)
+.|.++|+...|||++|+++++
T Consensus 34 ~~s~~~Ia~~agvs~~t~Y~yF 55 (203)
T 3ccy_A 34 ETSIGDIARACECSKSRLYHYF 55 (203)
T ss_dssp TSCHHHHHHHTTCCGGGGTTTC
T ss_pred cCCHHHHHHHhCCCcCeeeeee
Confidence 4899999999999999965543
No 483
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=29.09 E-value=16 Score=28.18 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred cCCHHHHHHHhCCcHHHHHHHhCC
Confidence 489999999999999998776554
No 484
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=29.04 E-value=23 Score=27.76 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=24.0
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
+.|.++|+...|||++|+++++..=-+.+..
T Consensus 46 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 76 (217)
T 3mvp_A 46 NVTTNEIAKKADVSVGTLYAYFASKEDILTA 76 (217)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred ccCHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 4899999999999999988876543333333
No 485
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.90 E-value=36 Score=28.05 Aligned_cols=42 Identities=12% Similarity=0.312 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 27 VPFVPVEKKTLVALSYMAT----QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 27 ~~~~~~~~~l~i~L~~L~~----g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+...+-+.-|-.++..+.. +.|.++|+...|||++|++++|.
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~ 61 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVA 61 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCC
T ss_pred CcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHHcC
Confidence 4456777777777776643 48999999999999999776554
No 486
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=28.88 E-value=16 Score=28.03 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=18.0
Q ss_pred CCcHHHHHhhhCCChhhHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSC 66 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~ 66 (307)
+.|.++|+...|||++|++++
T Consensus 27 ~~s~~~IA~~agvs~~tly~~ 47 (180)
T 2fd5_A 27 EPSVGEVMGAAGLTVGGFYAH 47 (180)
T ss_dssp SCCHHHHHHHTTCCGGGGGGT
T ss_pred cCCHHHHHHHhCCCccHHHHH
Confidence 589999999999999995543
No 487
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=28.82 E-value=20 Score=27.85 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSF 70 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~ 70 (307)
+.+.++|+...|||++|++++|..-
T Consensus 40 ~~t~~~Ia~~agvs~~t~Y~~F~~K 64 (203)
T 3mnl_A 40 AVQMRAVADRADVAVGTLYRYFPSK 64 (203)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cCCHHHHHHHcCCChhHHHHHcCCH
Confidence 4899999999999999988876543
No 488
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=28.80 E-value=23 Score=28.05 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHh-----cCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 36 TLVALSYMA-----TQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 36 l~i~L~~L~-----~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+-.++..+. .+.|.++|+...|||++|+++++.
T Consensus 17 l~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~ 54 (220)
T 3lsj_A 17 MSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFS 54 (220)
T ss_dssp HHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCS
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 444444555 358999999999999999665544
No 489
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=28.66 E-value=27 Score=28.37 Aligned_cols=32 Identities=6% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.|.++||...|||++|++++|..=-+.+...
T Consensus 43 ~~s~~~IA~~agvs~~tlY~~F~sKe~L~~av 74 (231)
T 2zcx_A 43 EITLTDIAATVGMHKSALLRYFETREQIFLKI 74 (231)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHH
Confidence 58999999999999999988776544444444
No 490
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=28.53 E-value=17 Score=28.44 Aligned_cols=45 Identities=7% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHH-HHHH-hc----CCcHHHHHhhhCCChhhHHHHHHHHHHHccc
Q psy4300 32 VEKKTLVA-LSYM-AT----QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQ 76 (307)
Q Consensus 32 ~~~~l~i~-L~~L-~~----g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~ 76 (307)
..++++-+ +..| .. +.|.++|+...|||++|+++++..=-+.+..
T Consensus 25 ~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 75 (212)
T 3nxc_A 25 RREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDS 75 (212)
T ss_dssp THHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHH
Confidence 34555544 5534 33 4999999999999999988766543333333
No 491
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=28.51 E-value=23 Score=28.03 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.+.++|+...|||++|++++|..
T Consensus 48 ~~tv~~IA~~agvs~~t~Y~~F~s 71 (215)
T 2qko_A 48 GLTFRAVDVEANVPKGTASNYFPS 71 (215)
T ss_dssp TCCHHHHHHHSSSTTTCHHHHCSC
T ss_pred hccHHHHHHHcCCCcchHHHhCCC
Confidence 489999999999999998776544
No 492
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=28.33 E-value=19 Score=28.66 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=19.4
Q ss_pred CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
+.|.++|+...|||++|+++++.
T Consensus 31 ~~s~~~IA~~aGvskgtlY~~F~ 53 (219)
T 2w53_A 31 RTTLEMIGARAGYTRGAVYWHFK 53 (219)
T ss_dssp TCCHHHHHHHHTSCHHHHHTTCS
T ss_pred cCCHHHHHHHhCCCchHHhhcCC
Confidence 58999999999999999765443
No 493
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=28.33 E-value=92 Score=24.86 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhcC--CcHHHHHhhhCCChhhHHHHHHH
Q psy4300 30 VPVEKKTLVALSYMATQ--LSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~g--~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
..-+++--..|..|... .+-.+|+..|+||..|+.|=+.+
T Consensus 8 m~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~e 49 (190)
T 4a0z_A 8 LKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTY 49 (190)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHH
Confidence 34456666666666543 68899999999999998875443
No 494
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=28.32 E-value=49 Score=26.37 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhc----CCcHHHHHhhhCCChhhHHHHHH
Q psy4300 30 VPVEKKTLVALSYMAT----QLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 30 ~~~~~~l~i~L~~L~~----g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
++-+.-+-.++..+.. +.|.++|+...|||++|++++|.
T Consensus 3 ltr~~Il~aA~~l~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~ 45 (207)
T 2xpw_A 3 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVK 45 (207)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhcC
Confidence 3444445555555432 48999999999999999887664
No 495
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=28.20 E-value=24 Score=28.22 Aligned_cols=24 Identities=4% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHH
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDS 69 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~ 69 (307)
+.|.++|+...|||++|+++++..
T Consensus 25 ~~t~~~IA~~Agvs~~t~Y~~F~s 48 (228)
T 3nnr_A 25 NITTNHIAAHLAISPGNLYYHFRN 48 (228)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hcCHHHHHHHhCCCCccchhcCCC
Confidence 489999999999999998876654
No 496
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.15 E-value=42 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred CCcHHHHHhhh-----CCChhhHHHHHHHHHHH
Q psy4300 46 QLSMRKIGDQF-----NLADSTVWSCIDSFLTA 73 (307)
Q Consensus 46 g~~~~~l~~~f-----gvs~stv~r~v~~~~~~ 73 (307)
..+-.+|...+ ++|.+||+|.++.+.+.
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 35666776665 79999999988877554
No 497
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=28.10 E-value=58 Score=28.08 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=21.2
Q ss_pred cCCcHHHHHhhhCCChhhHHHHHH
Q psy4300 45 TQLSMRKIGDQFNLADSTVWSCID 68 (307)
Q Consensus 45 ~g~~~~~l~~~fgvs~stv~r~v~ 68 (307)
.|.++.++|...|||+++++++=+
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~ 47 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIEN 47 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHC
Confidence 579999999999999999988643
No 498
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=27.98 E-value=19 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.9
Q ss_pred CCcHHHHHhhhCCChhhHHHHHHHHHHHcccc
Q psy4300 46 QLSMRKIGDQFNLADSTVWSCIDSFLTAMSQP 77 (307)
Q Consensus 46 g~~~~~l~~~fgvs~stv~r~v~~~~~~l~~~ 77 (307)
+.+.++|+...|||++|+++++..=-+.+...
T Consensus 34 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 65 (215)
T 3e7q_A 34 GASVRKICAEAGVSVGLINHHYDGKDALVAEA 65 (215)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 48999999999999999988776544444443
No 499
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=27.80 E-value=51 Score=23.45 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHhcCC-cHHHHHh----hhCCChhhHHHHHHHHHHH
Q psy4300 38 VALSYMATQL-SMRKIGD----QFNLADSTVWSCIDSFLTA 73 (307)
Q Consensus 38 i~L~~L~~g~-~~~~l~~----~fgvs~stv~r~v~~~~~~ 73 (307)
+.|..|..+. +.-++.. .++++.+|++..+++....
T Consensus 13 ~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~ 53 (108)
T 3l7w_A 13 LILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKA 53 (108)
T ss_dssp HHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHC
Confidence 4455665554 3334444 4799999999999988764
No 500
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=27.77 E-value=27 Score=27.05 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=22.5
Q ss_pred CcHHHHHhhhCCChhhHHHHHHHHHHHc
Q psy4300 47 LSMRKIGDQFNLADSTVWSCIDSFLTAM 74 (307)
Q Consensus 47 ~~~~~l~~~fgvs~stv~r~v~~~~~~l 74 (307)
.|.++|+...|||++|+++++..=-+.+
T Consensus 35 ~s~~~IA~~agvs~~tlY~~F~sK~~L~ 62 (194)
T 2q24_A 35 AHLERIAREAGVGSGTLYRNFPTREALI 62 (194)
T ss_dssp CCHHHHHHHTTCCHHHHHHHCCSHHHHH
T ss_pred CCHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 8999999999999999888765433333
Done!