RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4300
         (307 letters)



>gnl|CDD|222071 pfam13359, DDE_4, DDE superfamily endonuclease.  This family of
           proteins are related to pfam00665 and are probably
           endonucleases of the DDE superfamily. Transposase
           proteins are necessary for efficient DNA transposition.
           This domain is a member of the DDE superfamily, which
           contain three carboxylate residues that are believed to
           be responsible for coordinating metal ions needed for
           catalysis. The catalytic activity of this enzyme
           involves DNA cleavage at a specific site followed by a
           strand transfer reaction.
          Length = 155

 Score =  109 bits (275), Expect = 1e-29
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 112 IDGCHIEGKFSKDI---RNDYNNRKCTQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLS 168
           IDG  I  +  K +      Y+  K   ++ +  V   +  +  + VG  G   D ++L 
Sbjct: 1   IDGTEIPIERPKSLEEQAQTYSGYKKHNTLKVLIVVDPDGRIIFVSVGWPGSVSDKRILE 60

Query: 169 TSQIGRRIDAYGPTSLLYRDEYHLLGDSAYPLRTWCMVPYKNFGH---MTEEEKKYNTAL 225
            S +  ++              ++L D  +PL    + P         +TEEE ++N  +
Sbjct: 61  NSGLLEKLPPG----------DYVLADRGFPLSDSLLAPPAKKPGGAQLTEEEVEFNRRI 110

Query: 226 SKTRVPIENVFGLIKGRWRRLK-YIDVGDPKRMAYIISAACVLHN 269
           +  R+ +E V G +KGR+R L+  + +     +  I+   C LHN
Sbjct: 111 ASARIHVERVIGRLKGRFRILRGRLRISKLTTLDKIVLVCCALHN 155


>gnl|CDD|203098 pfam04827, Plant_tran, Plant transposon protein.  This family
           contains plant transposases which are putative members
           of the PIF / Ping-Pong family.
          Length = 205

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 18/201 (8%)

Query: 81  CQYIKWPTEEESVIIER--NFRALAKFPGVIGAIDGCHIEGKFSKDIRNDYNNR--KCTQ 136
             Y++ PT +    ++R  +      FPG++G++D  H + K           R    + 
Sbjct: 1   ASYLRAPTAKN---VDRLLHIGESRGFPGMLGSLDCMHWKWKNCPTAWKGQYTRGDSKSP 57

Query: 137 SMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRIDAYGPTSL---LYRDEYHL- 192
           ++IL+ V + +  + +   GC G N+D  VL+ S I   I       +   +   +Y++ 
Sbjct: 58  TIILEAVASYDLWIWHAFFGCPGSNNDINVLNQSPIFDDILQGTAPRVRYTVNGRQYNMG 117

Query: 193 --LGDSAYPLRTWCMVPYKNFGHMTEEEKK-YNTALSKTRVPIENVFGLIKGRWRRLKYI 249
             L D  YP   W     K+      E+ K +       R  +E  FG+++ R++ +   
Sbjct: 118 YYLADGIYP--EWATF-VKSIRLPQLEKHKLFAQQQEACRKDVERAFGVLQARFKIVATP 174

Query: 250 D-VGDPKRMAYIISAACVLHN 269
             + +   ++ I++A  +LHN
Sbjct: 175 ARLWNQSDLSNIMTACIILHN 195


>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A. 
          Length = 391

 Score = 31.4 bits (72), Expect = 0.51
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 69  SFLT-AMSQPQIQCQYIKWPTEEESVIIERNFRALAKFPGVI 109
           S+L   M++ Q  C ++ +  E    II  N      F G I
Sbjct: 221 SYLNCPMNKEQYPC-FLTYTNEATHEIIRDNLHRSPMFEGCI 261


>gnl|CDD|216602 pfam01609, DDE_Tnp_1, Transposase DDE domain.  Transposase proteins
           are necessary for efficient DNA transposition. This
           domain is a member of the DDE superfamily, which contain
           three carboxylate residues that are believed to be
           responsible for coordinating metal ions needed for
           catalysis. The catalytic activity of this enzyme
           involves DNA cleavage at a specific site followed by a
           strand transfer reaction. This family contains
           transposases for IS4, IS421, IS5377, IS427, IS402,
           IS1355, IS5, which was original isolated in
           bacteriophage lambda.
          Length = 194

 Score = 29.5 bits (66), Expect = 1.8
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 213 HMTEEEKKYNTALSKTRVPIENVFGLIKG--RWRRLKYIDVGDPKRMAYIISAACVL 267
                E +YN  L + R  IE VF  +K      RL+   +   +    +   A  L
Sbjct: 138 KKRGFELRYNLLLYRLRWQIERVFKWLKRFFGLDRLRLRSLNRAEAELLLALLAYNL 194


>gnl|CDD|234234 TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family.
            Members of this protein family are bacterial
           lipoproteins largely from the Gammaproteobacteria.
           Characterized members are expressed extracellularly and
           have esterase activity. Members include the lipase Pla-1
           from Aeromonas hydrophila (AF092033) and CHO cell
           elongation factor (cef) from Vibrio hollisae.
          Length = 792

 Score = 29.4 bits (66), Expect = 2.6
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 4   TTFGFLVEALAAINGYETLYERGVPFVPVEKKTLVALSYMATQLSMRKIGDQFNLADSTV 63
           TTF   V+A AA NG E                 VA    A +  +     QF  A  T 
Sbjct: 627 TTFKAFVDAQAAANGDE-------LEAAACYTAFVAALTPAQEAEISAFFSQFAFAAQTA 679

Query: 64  WSCIDSF 70
               D  
Sbjct: 680 LDSADPI 686


>gnl|CDD|222263 pfam13613, DDE_4_2, DDE superfamily endonuclease.  This family of
          proteins are related to pfam00665 and are probably
          endonucleases of the DDE superfamily. Transposase
          proteins are necessary for efficient DNA transposition.
          This domain is a member of the DDE superfamily, which
          contain three carboxylate residues that are believed to
          be responsible for coordinating metal ions needed for
          catalysis. The catalytic activity of this enzyme
          involves DNA cleavage at a specific site followed by a
          strand transfer reaction.
          Length = 95

 Score = 27.7 bits (62), Expect = 2.8
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 31 PVEKKTLVALSYMATQLSMRKIGDQFNLADSTV 63
           +E + L+ L Y+    +   I   F +++ST 
Sbjct: 14 SLEDQLLLTLVYLREYRTYEHIAASFGISESTA 46


>gnl|CDD|222070 pfam13358, DDE_3, DDE superfamily endonuclease.  This family of
           proteins are related to pfam00665 and are probably
           endonucleases of the DDE superfamily. Transposase
           proteins are necessary for efficient DNA transposition.
           This domain is a member of the DDE superfamily, which
           contain three carboxylate residues that are believed to
           be responsible for coordinating metal ions needed for
           catalysis. The catalytic activity of this enzyme
           involves DNA cleavage at a specific site followed by a
           strand transfer reaction.
          Length = 146

 Score = 27.6 bits (62), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 231 PIENVFGLIKGRWRRLKY 248
           PIE V+ ++K R R   +
Sbjct: 122 PIELVWSVLKRRVRNRAF 139


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,512,414
Number of extensions: 1451016
Number of successful extensions: 1045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1042
Number of HSP's successfully gapped: 14
Length of query: 307
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 210
Effective length of database: 6,635,264
Effective search space: 1393405440
Effective search space used: 1393405440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)