RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4300
         (307 letters)



>d1qbea_ d.85.1.1 (A:) Qbeta coat protein {Bacteriophage Qbeta
           [TaxId: 39803]}
          Length = 132

 Score = 29.3 bits (65), Expect = 0.31
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 10/102 (9%)

Query: 17  NGYETLYERGVPFVP-VEKKTLVALSYMATQLSMRKIGDQFNLADSTV----WSCIDSFL 71
           NG  +L + G   VP +EK+  V++S  +      K+  Q  + + T      SC D  +
Sbjct: 30  NGVASLSQAGA--VPALEKRVTVSVSQPSRNRKNYKV--QVKIQNPTACTANGSC-DPSV 84

Query: 72  TAMSQPQIQCQYIKWPTEEESVIIERNFRALAKFPGVIGAID 113
           T  +   +   + ++ T+EE   +     AL   P +I AID
Sbjct: 85  TRQAYADVTFSFTQYSTDEERAFVRTELAALLASPLLIDAID 126


>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 65

 Score = 27.1 bits (60), Expect = 0.61
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 85  KWPTEEESVIIERNFRALAKFPGVIGAIDGCHIEGKFSKDIRNDYNNRK 133
           +W TEE+ + ++    A+ K+     AI    I  K    ++N + N +
Sbjct: 7   RWTTEEQLLAVQ----AIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYR 50


>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId:
           562]}
          Length = 158

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 236 FGLIKGRWRRLKYIDVG--------DPKRMAYIISAACVLHNFCYLQDDVVEEIITHPIE 287
           +G+I+   R+L Y+  G         P R+  I +    +          +E++      
Sbjct: 15  YGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNA 74

Query: 288 NQMHQRG 294
           +   + G
Sbjct: 75  DSALKLG 81


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 27.2 bits (60), Expect = 2.9
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 80  QCQYIKWPTEEESVIIERNFRALAKFPGVIGAIDGCHIEGK-----FSKDIRNDYNNRKC 134
             + I   TE   + I+++ R +    G I  I+    EG         D+ N  + R+ 
Sbjct: 603 HREVINSSTEGLLLNIDKDIRKILS--GYIVEIED--TEGLKEVINDRYDMLNISSLRQD 658

Query: 135 TQSMILQGVCTSNKLLTNIHVGCTGRNHDAKVLSTSQIGRRID 177
            ++ I        K    + +  +  N+   V + ++    I+
Sbjct: 659 GKTFI-----DFKKYNDKLPLYISNPNYKVNVYAVTKENTIIN 696


>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine
           polyomavirus, strain small-plaque 16 [TaxId: 10634]}
          Length = 285

 Score = 25.6 bits (56), Expect = 8.2
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 5/29 (17%)

Query: 192 LLGDSAYPLRTWCMVPYKN-----FGHMT 215
           L  D  YP+  W   P KN     FG+ T
Sbjct: 185 LDKDGMYPVEIWHPDPAKNENTRYFGNYT 213


>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
           Sv40 [TaxId: 10633]}
          Length = 348

 Score = 25.6 bits (56), Expect = 8.4
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 5/29 (17%)

Query: 192 LLGDSAYPLRTWCMVPYKN-----FGHMT 215
           L  D+AYP+  W   P KN     FG  T
Sbjct: 184 LDKDNAYPVECWVPDPSKNENTRYFGTYT 212


>d1cvra2 c.17.1.2 (A:1-350) Gingipain R (RgpB), N-terminal domain
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 350

 Score = 25.5 bits (55), Expect = 8.5
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 174 RRIDAYGPTSLLYRDEYHLLGDSAYPLRT 202
             ++ Y        D + + GD +  +RT
Sbjct: 320 AMVEKYKKDGENMLDTWTVFGDPSLLVRT 348


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,138
Number of extensions: 53220
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 9
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)