BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4302
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 141/543 (25%), Positives = 232/543 (42%), Gaps = 63/543 (11%)
Query: 61 ERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQ 120
E ++ IN + P P+I+ GD++VV++ NK+ V IHWHG+ QR TP +DG ++Q
Sbjct: 21 ENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQ 80
Query: 121 CPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPK-KADPNRDQYDTDYP 179
C I P T+ Y F GTFFYH H+G Q+ GL G L++ P+ K +P YD +
Sbjct: 81 CAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEP--FHYDGEI- 137
Query: 180 SHTIIITDWLHGMTDAKFPGNTYA--NFGTRTESFLINGRSVFKSG-------------- 223
++++DW H + G + + ++ L+NGR F
Sbjct: 138 --NLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKL 195
Query: 224 NGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDS 283
G+ + PY F V+ +R RI + LA + F + H++ ++ DG VQP
Sbjct: 196 KGSESCAPYI-FHVSPKKTYRIRIASTTALAA-LNFAIGNHQLLVVEADGNYVQPFYTSD 253
Query: 284 ITIFPGQYTPV--------NSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSD 335
I I+ G+ V + +++ A H + + L S++ L +S
Sbjct: 254 IDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQ 313
Query: 336 TNPNVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSS 395
T W+ + T + T P + F R N ++ + + + +
Sbjct: 314 T---PAWDDFDRSKNFTYRITAAMGSPKPPV-------KFNRRIFLLNTQNVINGYVKWA 363
Query: 396 PNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKV 455
N + + LG + + +L P P+D + + ++ V K+
Sbjct: 364 INDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKI 423
Query: 456 GLNQVAEIIF--IDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAR 513
G +V ++I + + + HP HLHG D +++ G GK A
Sbjct: 424 G--EVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGD-----------GKFS---AE 467
Query: 514 EGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573
E L K P +++TV I P G+T +R +NPG+W HCH H GM VF G
Sbjct: 468 EESSLNLK---NPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG 524
Query: 574 DRK 576
K
Sbjct: 525 VEK 527
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 151/553 (27%), Positives = 211/553 (38%), Gaps = 104/553 (18%)
Query: 41 CINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD----RV 96
I D VT DG R + N P P I +GD ++V + + + +
Sbjct: 1 AIGPVTDLTISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKT 60
Query: 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDG 154
TIHWHG++Q T +DG + QCPI ++ Y F +P GTF+YHSH+ Q DG
Sbjct: 61 TTIHWHGLFQHGTNWADGPAFVNQCPIASGNSFLYDF-TVPDQAGTFWYHSHLSTQYCDG 119
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLI 214
L GPLV+ P +DP YD D + I ++DW H T AK F +S LI
Sbjct: 120 LRGPLVVYDP--SDPYASMYDVDDDTTVITLSDWYH--TAAKLG----PAFPPNADSVLI 171
Query: 215 NGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGT 274
NG F GN + V V + R+RFR++ SC F ++ H M +I VDG
Sbjct: 172 NGLGRFAGGNASDLAV----ITVEQNKRYRFRLVSLSCDPN-FTFSIDGHNMTIIEVDGV 226
Query: 275 PVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAHMGSRR-DRLNILRLRKSLNA--LDSS 331
+P DSI IF Q + VLN + R + LN+ L S
Sbjct: 227 NHEPLEVDSIQIFASQ----RYSFVLNATQSVDNYWIRAIPNTGTIDTTGGLNSAILRYS 282
Query: 332 DCSDTNPNVCWNHVNSLTPATEKATV---LKAVPDIRLVFAVD-----EYHFTRDSLFWN 383
+P N S+ P E V A P +V VD ++ F + F N
Sbjct: 283 GADIVDPTA--NATTSVIPLVETDLVPLDSPAAPGDPVVGGVDLAMNLDFSFNGTNFFIN 340
Query: 384 DEDEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKG 443
+E +I V P+L Q L A+
Sbjct: 341 NE-----------TLIPPTV-----------PVLLQIL----------------SGAQSA 362
Query: 444 GKLCECVEIIKVGLNQVAEIIF----IDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAED 499
L + + LN E+ F ++ + HP HLHG ++ + D
Sbjct: 363 SDLLPTGSVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVRSA---GSSD 419
Query: 500 HRAFVGKLQERLAREGPDLATKIRPQPCVKDTV-TIPPNGYTVVRVHFNNPGIWIMHCHF 558
+ P +DTV T P +R +N G W +HCH
Sbjct: 420 YNYV---------------------NPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHI 458
Query: 559 IFHTETGMNTVFQ 571
FH E G VF
Sbjct: 459 DFHLEAGFAIVFA 471
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 47 DDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD----RVVTIHWH 102
D + DG ER + +N P+P I GD +++ N++ + + +IHWH
Sbjct: 7 DLTVTNANIVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWH 66
Query: 103 GVYQRHTPHSDGVPLLTQCPIIPETTYRYKF--PAMPYGTFFYHSHIGFQKMDGLEGPLV 160
G +Q+ T +DG + QCPI ++ Y F P GTF+YHSH+ Q DGL GP V
Sbjct: 67 GFFQKGTNWADGPAFINQCPIASGNSFLYDFQVPGQA-GTFWYHSHLSTQYCDGLRGPFV 125
Query: 161 IRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTR----TESFLING 216
+ P DP+ + YD D S I + DW H A G R +S LING
Sbjct: 126 VYDPN--DPHANLYDVDDESTVITLADWYH----------VAAKLGPRFPKGADSTLING 173
Query: 217 RSVFKSGNGTSNPVP-YSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTP 275
G TS P + V KG R+RFR++ SC F ++ H++ +I DG
Sbjct: 174 L-----GRSTSTPTADLAVISVTKGKRYRFRLVSLSCDPN-YTFSIDSHQLTVIEADGVS 227
Query: 276 VQPQMFDSITIFPGQYTPVNSAIVLNINLD 305
QP DSI IF Q + VLN N D
Sbjct: 228 TQPVTVDSIQIFAAQ----RYSFVLNANQD 253
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 22/126 (17%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP HLHG ++ + + + ++ V + D+ + PQ D VTI
Sbjct: 394 HPFHLHG-HVFAVVRSAGSTSYNYDDPVWR----------DVVSTGTPQ--AGDNVTI-- 438
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPTCNNYLPPVD 596
R +NPG W +HCH FH + G V D + V P +N P D
Sbjct: 439 ------RFQTDNPGPWFLHCHIDFHLDAGF-AVVMAEDIPNTVNANPVPQAWSNLCPTYD 491
Query: 597 PNEFKN 602
E N
Sbjct: 492 ALEPSN 497
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 200/526 (38%), Gaps = 84/526 (15%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV----TIHWHGVYQRHTP 110
+ DG RP + P P I GD + N++++ + +IHWHG +Q+ T
Sbjct: 16 IVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTN 75
Query: 111 HSDGVPLLTQCPIIPETTYRYKF--PAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKAD 168
+DG +TQCPII ++ Y F P M GT++YHSH+ Q DGL GP V+ P D
Sbjct: 76 WADGPAFITQCPIIVGNSFSYNFNVPGMA-GTYWYHSHLTTQYCDGLRGPFVVYDPN--D 132
Query: 169 PNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSN 228
P+ + YD D + I + DW H + G +S LI+G +
Sbjct: 133 PDANLYDVDDDTTIITLADWYHVLAKEMGAGGA-----ITADSTLIDG---LGRTHVNVA 184
Query: 229 PVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFP 288
VP S V G R+R R++ SC F ++ H M +I DG Q D I IF
Sbjct: 185 AVPLSVITVEVGKRYRMRLVSISCDP-NYDFSIDGHDMTIIETDGVDSQELTVDEIQIFA 243
Query: 289 GQYTPVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNPNVC-WNHVNS 347
Q + VLN N + +R + N+ N + ++ +
Sbjct: 244 AQ----RYSFVLNANQPVGNY----------WIRANPNSGGEGFDGGINSAILRYDGATT 289
Query: 348 LTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNI 407
P T +TV + + D + +R+ + N P+ N+
Sbjct: 290 ADPVTVASTV-----HTKCLIETDLHPLSRNGVPGN------------PHQGGADCNLNL 332
Query: 408 SLGIL--PFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIF 465
SLG F I P P +C A L +I + N EI
Sbjct: 333 SLGFACGNFVINGVSFTPPT---VPVLLQIC-SGANTAADLLPSGSVISLPSNSTIEIAL 388
Query: 466 IDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQ 525
+ HP HLHG D + E +T
Sbjct: 389 ---PAGAAGGPHPFHLHGHDFAV------------------------SESASNSTSNYDD 421
Query: 526 PCVKDTVTIPPNGYTV-VRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
P +D V+I G V +R +NPG W +HCH +H + G VF
Sbjct: 422 PIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVF 467
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 131/280 (46%), Gaps = 38/280 (13%)
Query: 33 TIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKI 92
IGPA + V+ DG R + +N PSP I +GD ++V + +
Sbjct: 1 AIGPAASLVV--------ANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTL 52
Query: 93 VD----RVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSH 146
+ + +IHWHG +Q T +DG + QCPI ++ Y F +P GTF+YHSH
Sbjct: 53 TNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDF-HVPDQAGTFWYHSH 111
Query: 147 IGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFG 206
+ Q DGL GP V+ PK DP+ +YD D S I +TDW H T A G
Sbjct: 112 LSTQYCDGLRGPFVVYDPK--DPHASRYDVDNESTVITLTDWYH----------TAARLG 159
Query: 207 TRTESFLINGRSVFKSGNGTSNPVPYSKF---KVNKGLRHRFRIIGGSCLACPMLFFVEK 263
R F + + +G G S P + V G R+RFR++ SC F ++
Sbjct: 160 PR---FPLGADATLINGLGRSASTPTAALAVINVQHGKRYRFRLVSISCDPN-YTFSIDG 215
Query: 264 HRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNIN 303
H + +I VDG QP + DSI IF Q + VLN N
Sbjct: 216 HNLTVIEVDGINSQPLLVDSIQIFAAQ----RYSFVLNAN 251
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 23/102 (22%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP HLHG ++ + + + R+ T P D VTI
Sbjct: 395 HPFHLHGHAFAVVRSA--------GSTTYNYNDPIFRDVVSTGT-----PAAGDNVTI-- 439
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQ--VGDRK 576
R +NPG W +HCH FH E G VF V D K
Sbjct: 440 ------RFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVK 475
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 140/538 (26%), Positives = 207/538 (38%), Gaps = 109/538 (20%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDT----IVVDVKNKIVDRVVTIHWHGVYQRHTP 110
V+ DG R + +N + P I+ + D +V D+ N + R +IHWHG++QR T
Sbjct: 16 VSPDGFTRAGILVNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTN 74
Query: 111 HSDGVPLLTQCPIIPETTYRYKF-PAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADP 169
+DG + QCPI P + YKF PA GTF+YHSH G Q DGL GP+VI DP
Sbjct: 75 WADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY--DDNDP 132
Query: 170 NRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNP 229
+ YD D + I + DW H P + + ++ LING+ + G
Sbjct: 133 HAALYDEDDENTIITLADWYH------IPAPSIQG-AAQPDATLINGKGRYVGGPAAE-- 183
Query: 230 VPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPG 289
S V +G ++R R+I SC F ++ H + +I VDG +P D + I
Sbjct: 184 --LSIVNVEQGKKYRMRLISLSCDPN-WQFSIDGHELTIIEVDGELTEPHTVDRLQI--- 237
Query: 290 QYTPVNSAIVLNINLDAAH--------------MGSRRDRLNILRLRKSLNALDSSDCSD 335
+T + VL+ N + G+ + +N LR + A ++ +
Sbjct: 238 -FTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYA-GAANADPTTS 295
Query: 336 TNPNVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSS 395
NPN L A A + A P I A D + F
Sbjct: 296 ANPNPA-----QLNEADLHALIDPAAPGIPTPGAADV------------NLRFQLGFSGG 338
Query: 396 PNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKV 455
I + S+ P L Q + A+ L + ++
Sbjct: 339 RFTINGTAYESPSV-----PTLLQIM----------------SGAQSANDLLPAGSVYEL 377
Query: 456 GLNQVAEIIFIDWI--GPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAR 513
NQV E++ + GP HP HLHG ++ FV
Sbjct: 378 PRNQVVELVVPAGVLGGP-----HPFHLHGHAFSVVRS----AGSSTYNFV--------- 419
Query: 514 EGPDLATKIRPQPCVKDTVTIPPNGYTV-VRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
P +D V++ G V +R +NPG W HCH FH G+ VF
Sbjct: 420 -----------NPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 140/538 (26%), Positives = 207/538 (38%), Gaps = 109/538 (20%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDT----IVVDVKNKIVDRVVTIHWHGVYQRHTP 110
V+ DG R + +N + P I+ + D +V D+ N + R +IHWHG++QR T
Sbjct: 16 VSPDGFTRAGILVNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTN 74
Query: 111 HSDGVPLLTQCPIIPETTYRYKF-PAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADP 169
+DG + QCPI P + YKF PA GTF+YHSH G Q DGL GP+VI DP
Sbjct: 75 WADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY--DDNDP 132
Query: 170 NRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNP 229
+ YD D + I + DW H P + + ++ LING+ + G
Sbjct: 133 HAALYDEDDENTIITLADWYH------IPAPSIQG-AAQPDATLINGKGRYVGGPAAE-- 183
Query: 230 VPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPG 289
S V +G ++R R+I SC F ++ H + +I VDG +P D + I
Sbjct: 184 --LSIVNVEQGKKYRMRLISLSCDPN-WQFSIDGHELTIIEVDGELTEPHTVDRLQI--- 237
Query: 290 QYTPVNSAIVLNINLDAAH--------------MGSRRDRLNILRLRKSLNALDSSDCSD 335
+T + VL+ N + G+ + +N LR + A ++ +
Sbjct: 238 -FTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYA-GAANADPTTS 295
Query: 336 TNPNVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSS 395
NPN L A A + A P I A D + F
Sbjct: 296 ANPNPA-----QLNEADLHALIDPAAPGIPTPGAADV------------NLRFQLGFSGG 338
Query: 396 PNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKV 455
I + S+ P L Q + A+ L + ++
Sbjct: 339 RFTINGTAYESPSV-----PTLLQIM----------------SGAQSANDLLPAGSVYEL 377
Query: 456 GLNQVAEIIFIDWI--GPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAR 513
NQV E++ + GP HP HLHG ++ FV
Sbjct: 378 PRNQVVELVVPAGVLGGP-----HPFHLHGHAFSVVRS----AGSSTYNFV--------- 419
Query: 514 EGPDLATKIRPQPCVKDTVTIPPNGYTV-VRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
P +D V++ G V +R +NPG W HCH FH G+ VF
Sbjct: 420 -----------NPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 126/262 (48%), Gaps = 22/262 (8%)
Query: 47 DDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRVVTIHWH 102
D+ + DG R + +N P P + GD ++ ++ N + + ++HWH
Sbjct: 7 DNTITDAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWH 66
Query: 103 GVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVI 161
G +Q+ T +DG + QCPI P ++ Y F GTF+YHSH+ Q DGL GP V+
Sbjct: 67 GFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 162 RRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFK 221
P DP+ +YD D I + DW H T AK F ++ LING+ +
Sbjct: 127 YDPN--DPHASRYDVDNDDTVITLADWYH--TAAKLG----PRFPAGADATLINGKG--R 176
Query: 222 SGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMF 281
+ + TS S KV KG R RFR++ SC F ++ H + +I VD + QP
Sbjct: 177 APSDTS--AELSVIKVTKGKRXRFRLVSLSCDPN-FTFSIDGHNLTIIEVDSSNSQPLSV 233
Query: 282 DSITIFPGQYTPVNSAIVLNIN 303
DSI IF Q + VLN N
Sbjct: 234 DSIQIFAAQ----RYSFVLNAN 251
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 526 PCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEF 585
P D VTI R NNPG W +HCH FH E G V Q D D T P
Sbjct: 431 PAAGDNVTI--------RFLTNNPGPWFLHCHIDFHLEGGF-AVVQAEDVPDVKATNPVP 481
Query: 586 PTCNNYLPPVDPNE 599
++ P D N
Sbjct: 482 QAWSDLCPTYDANA 495
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 121/253 (47%), Gaps = 31/253 (12%)
Query: 47 DDCFKKGCVTADGVE-RPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD----RVVTIHW 101
D + VTA+G P++T N D ++V +++ D R +IHW
Sbjct: 38 DGTGARSAVTAEGTTIAPLITGNID-----------DRFQINVIDQLTDANMRRATSIHW 86
Query: 102 HGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDGLEGPL 159
HG +Q T DG + QCPIIP ++ Y F +P GT++YHSH+ Q DGL G
Sbjct: 87 HGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF-VVPGQAGTYWYHSHLSTQYCDGLRGAF 145
Query: 160 VIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSV 219
V+ P DP+ YD D S I I DW H ++ F ++ LING
Sbjct: 146 VVYDPN--DPHLSLYDVDDASTVITIADWYHSLSTVLF--PNPNKAPPAPDTTLINGL-- 199
Query: 220 FKSGNGTSNPVP--YSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQ 277
G ++NP + V G R+RFRI+ SC F ++ HRM +I VDG Q
Sbjct: 200 ---GRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPN-YAFSIDGHRMTVIEVDGVSHQ 255
Query: 278 PQMFDSITIFPGQ 290
P DS+TIF GQ
Sbjct: 256 PLTVDSLTIFAGQ 268
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 42/121 (34%), Gaps = 33/121 (27%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP HLHG + ++ P + P +D V+I
Sbjct: 417 HPFHLHGHNFDVVRT------------------------PGSSVYNYVNPVRRDVVSIGG 452
Query: 537 NGYTVV-RVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPTCNNYLPPV 595
G V R +NPG W +HCH +H E G+ V F + P P N P
Sbjct: 453 GGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVV--------FAEDIPNIPIANAISPAW 504
Query: 596 D 596
D
Sbjct: 505 D 505
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 133/280 (47%), Gaps = 29/280 (10%)
Query: 41 CINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRV 96
I D G V+ DG R + +N PSP I +GD ++ ++ N + +
Sbjct: 1 AIGPVADLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKS 60
Query: 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDG 154
+IHWHG +Q T +DG + QCPI + Y F +P GTF+YHSH+ Q DG
Sbjct: 61 TSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQYCDG 119
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLI 214
L GP+V+ P+ DP++ YD D S I + DW H P T ++ LI
Sbjct: 120 LRGPIVVYDPQ--DPHKSLYDVDDDSTVITLADWYHLAAKVGSPVPT-------ADATLI 170
Query: 215 N--GRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVD 272
N GRS+ T N + V KG R+RFR++ SC +F ++ H + +I D
Sbjct: 171 NGLGRSI-----DTLN-ADLAVITVTKGKRYRFRLVSLSCDPN-HVFSIDGHSLTVIEAD 223
Query: 273 GTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAHMGSR 312
++PQ DSI IF Q + VLN + D + R
Sbjct: 224 SVNLKPQTVDSIQIFAAQ----RYSFVLNADQDVGNYWIR 259
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 475 FLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTV-T 533
F HP HLHG ++ +T P +D V T
Sbjct: 392 FPHPFHLHGHTFAVVRSA------------------------GSSTYNYENPVYRDVVST 427
Query: 534 IPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
P +R +NPG W +HCH FH E G V
Sbjct: 428 GSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVM 464
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 122/259 (47%), Gaps = 26/259 (10%)
Query: 41 CINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRV 96
+ D V+ DG R + +N P P + GD ++ ++ N + +
Sbjct: 1 AVGPVADLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKS 60
Query: 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDG 154
+IHWHG +Q T +DG + QCPI P ++ Y F +P GTF+YHSH+ Q DG
Sbjct: 61 TSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDG 119
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDA--KFPGNTYANFGTRTESF 212
L GP V+ P DP+ +YD D I + DW H +FPG ++
Sbjct: 120 LRGPFVVYDPN--DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGG--------ADAT 169
Query: 213 LINGRSVFKSGNGTSNPVP-YSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITV 271
LING+ G S+ V S KV KG R+RFR++ SC F ++ H + +I V
Sbjct: 170 LINGK-----GRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPN-HTFSIDGHNLTIIEV 223
Query: 272 DGTPVQPQMFDSITIFPGQ 290
D QP DSI IF Q
Sbjct: 224 DSVNSQPLEVDSIQIFAAQ 242
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 526 PCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTV 569
P D VTI R NNPG W +HCH FH E G V
Sbjct: 431 PAAGDNVTI--------RFDTNNPGPWFLHCHIDFHLEGGFAVV 466
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 122/259 (47%), Gaps = 26/259 (10%)
Query: 41 CINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRV 96
+ D V+ DG R + +N P P + GD ++ ++ N + +
Sbjct: 1 AVGPVADLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKS 60
Query: 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDG 154
+IHWHG +Q T +DG + QCPI P ++ Y F +P GTF+YHSH+ Q DG
Sbjct: 61 TSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDG 119
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDA--KFPGNTYANFGTRTESF 212
L GP V+ P DP+ +YD D I + DW H +FPG ++
Sbjct: 120 LRGPFVVYDPN--DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGG--------ADAT 169
Query: 213 LINGRSVFKSGNGTSNPVP-YSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITV 271
LING+ G S+ V S KV KG R+RFR++ SC F ++ H + +I V
Sbjct: 170 LINGK-----GRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPN-HTFSIDGHNLTIIEV 223
Query: 272 DGTPVQPQMFDSITIFPGQ 290
D QP DSI IF Q
Sbjct: 224 DSVNSQPLEVDSIQIFAAQ 242
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 526 PCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTV 569
P D VTI R NNPG W +HCH FH E G V
Sbjct: 431 PAAGDNVTI--------RFDTNNPGPWFLHCHIDFHLEGGFAVV 466
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 120/246 (48%), Gaps = 17/246 (6%)
Query: 51 KKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTP 110
+ +T DG R +T N +P P+I GD +++ V N + +IHWHG+ Q +
Sbjct: 75 ENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSL 134
Query: 111 HSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPN 170
DGVP +TQCPI P T YKF YGT +YHSH Q DGL GPL+I P AD
Sbjct: 135 EYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPATAD-- 192
Query: 171 RDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGT--RTESFLINGRSVFKSGNGTS- 227
YD D I + DW H ++ F A G E+ L+NG + F T
Sbjct: 193 ---YDEDVG--VIFLQDWAH---ESVFEIWDTARLGAPPALENTLMNGTNTFDCSASTDP 244
Query: 228 NPVPYS-KFKVN--KGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSI 284
N V KF++ +G ++R R+I + F ++ H + +I D P+ P D++
Sbjct: 245 NCVGGGKKFELTFVEGTKYRLRLI-NVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTL 303
Query: 285 TIFPGQ 290
I GQ
Sbjct: 304 LIGIGQ 309
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP+HLHG D +I+ Q D E P + P +D +P
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSD--------------ESPAKFNLVNPPR--RDVAALPG 506
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
NGY + +NPG W++HCH +H GM F
Sbjct: 507 NGYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQF 540
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 120/246 (48%), Gaps = 17/246 (6%)
Query: 51 KKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTP 110
+ +T DG R +T N +P P+I GD +++ V N + +IHWHG+ Q +
Sbjct: 75 ENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSL 134
Query: 111 HSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPN 170
DGVP +TQCPI P T YKF YGT +YHSH Q DGL GPL+I P AD
Sbjct: 135 EYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPATAD-- 192
Query: 171 RDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGT--RTESFLINGRSVFKSGNGTS- 227
YD D I + DW H ++ F A G E+ L+NG + F T
Sbjct: 193 ---YDEDVG--VIFLQDWAH---ESVFEIWDTARLGAPPALENTLMNGTNTFDCSASTDP 244
Query: 228 NPVPYS-KFKVN--KGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSI 284
N V KF++ +G ++R R+I + F ++ H + +I D P+ P D++
Sbjct: 245 NCVGGGKKFELTFVEGTKYRLRLI-NVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTL 303
Query: 285 TIFPGQ 290
I GQ
Sbjct: 304 LIGIGQ 309
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP+HLHG D +I+ Q D E P + P +D +P
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSD--------------ESPAKFNLVNPPR--RDVAALPG 506
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
NGY + +NPG W++HCH +H G+ F
Sbjct: 507 NGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQF 540
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 24/247 (9%)
Query: 52 KGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD----RVVTIHWHGVYQR 107
V ADG R + +N P P I +GD ++V N + + + ++HWHG +Q+
Sbjct: 12 NAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQK 71
Query: 108 HTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVIRRPKK 166
T +DG + QCPI +++ Y F + GTF+YHSH+ Q DG GP V+ P
Sbjct: 72 GTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPN- 130
Query: 167 ADPNRDQYDTDYPSHTIIITDWLH--GMTDAKFPGNTYANFGTRTESFLINGRSVFKSGN 224
DP+ + YD D + I +TDW H PG ++ LING+ G
Sbjct: 131 -DPSANLYDVDNLNTVITLTDWYHTAAQNGPAKPGG--------ADATLINGQ-----GR 176
Query: 225 GTSNP-VPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDS 283
G S+P + V G R+RFR++ SC F ++ H+M +I VD VQP +
Sbjct: 177 GPSSPSADLAVISVTAGKRYRFRLVSNSCDPN-YTFSIDGHQMTIIQVDSINVQPLVVLK 235
Query: 284 ITIFPGQ 290
I I+ Q
Sbjct: 236 IQIYAAQ 242
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP HLHG ++ + + + R+ T P D VTI
Sbjct: 395 HPFHLHGHAFAVVRSA--------GSTTYNYNDPIFRDTVSTGT-----PAANDNVTI-- 439
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
R NNPG W +HCH FH E G VF
Sbjct: 440 ------RFKTNNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 117/249 (46%), Gaps = 18/249 (7%)
Query: 47 DDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRVVTIHWH 102
D+ + DG R + +N P P + GD ++ ++ N + + ++HWH
Sbjct: 7 DNTITNAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWH 66
Query: 103 GVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVI 161
G +Q+ T +DG + QCPI P ++ Y F GTF+YHSH+ Q DGL GP V+
Sbjct: 67 GFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 162 RRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFK 221
P DP+ +YD D TI + DW H T AK G + N +S LING+
Sbjct: 127 YDPN--DPHASRYDVDNDDTTITLADWYH--TAAKL-GPAFPN---GADSTLINGKGRAP 178
Query: 222 SGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMF 281
S + S V KG R RFR++ SC F ++ H +I D QP
Sbjct: 179 SDSSAQ----LSVVSVTKGKRXRFRLVSLSCDPN-FTFSIDGHNNTIIETDSVNSQPLNT 233
Query: 282 DSITIFPGQ 290
DSI IF Q
Sbjct: 234 DSIQIFAAQ 242
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 526 PCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEF 585
P D VTI R NNPG W +HCH FH E G V Q D D T P
Sbjct: 431 PAAGDNVTI--------RFLTNNPGPWFLHCHIDFHLEGGF-AVVQAEDVPDVKATNPVP 481
Query: 586 PTCNNYLPPVDPNE 599
++ P D N
Sbjct: 482 QAWSDLCPTYDANA 495
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 124/271 (45%), Gaps = 25/271 (9%)
Query: 41 CINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRV 96
I D G V+ DG R + +N PSP I +GD ++ ++ N + +
Sbjct: 1 AIGPVADLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKS 60
Query: 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDG 154
+IHWHG +Q T +DG + QCPI + Y F +P GTF+YHSH+ Q DG
Sbjct: 61 TSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQYCDG 119
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLI 214
L GP+V+ P DP+ YD D S I + DW H P T ++ LI
Sbjct: 120 LRGPIVVYDPN--DPHASLYDVDDDSTVITLADWYHLAAKVGAPVPT-------ADATLI 170
Query: 215 NGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGT 274
NG + + + V KG R+RFR++ SC F ++ H + +I D
Sbjct: 171 NGLGR----SAATLAADLAVITVTKGKRYRFRLVSLSCDPN-YTFSIDGHSLTVIEADSV 225
Query: 275 PVQPQMFDSITIFPGQYTPVNSAIVLNINLD 305
++P DS+ IF Q + VLN + D
Sbjct: 226 NLKPHTVDSLQIFAAQ----RYSFVLNADQD 252
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 37/110 (33%), Gaps = 26/110 (23%)
Query: 475 FLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTV-T 533
F HP HLHG ++ +T P +D V T
Sbjct: 392 FPHPFHLHGHVFAVVRSA------------------------GSSTYNYANPVYRDVVST 427
Query: 534 IPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPP 583
P +R +NPG W +HCH FH E G V D D T P
Sbjct: 428 GAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGF-AVVMAEDIPDVAATNP 476
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 124/271 (45%), Gaps = 25/271 (9%)
Query: 41 CINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRV 96
I D G V+ DG R + +N PSP I +GD ++ ++ N + +
Sbjct: 1 AIGPVADLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKS 60
Query: 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDG 154
+IHWHG +Q T +DG + QCPI + Y F +P GTF+YHSH+ Q DG
Sbjct: 61 TSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQYCDG 119
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLI 214
L GP+V+ P DP+ YD D S I + DW H P T ++ LI
Sbjct: 120 LRGPIVVYDPN--DPHASLYDVDDDSTVITLADWYHLAAKVGAPVPT-------ADATLI 170
Query: 215 NGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGT 274
NG + + + V KG R+RFR++ SC F ++ H + +I D
Sbjct: 171 NGLGR----SAATLAADLAVITVTKGKRYRFRLVSLSCDPN-YTFSIDGHSLTVIEADSV 225
Query: 275 PVQPQMFDSITIFPGQYTPVNSAIVLNINLD 305
++P DS+ IF Q + VLN + D
Sbjct: 226 NLKPHTVDSLQIFAAQ----RYSFVLNADQD 252
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 37/110 (33%), Gaps = 26/110 (23%)
Query: 475 FLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTV-T 533
F HP HLHG ++ +T P +D V T
Sbjct: 392 FPHPFHLHGHVFAVVRSA------------------------GSSTYNYANPVYRDVVST 427
Query: 534 IPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPP 583
P +R +NPG W +HCH FH E G V D D T P
Sbjct: 428 GAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGF-AVVMAEDIPDVAATNP 476
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 123/258 (47%), Gaps = 24/258 (9%)
Query: 41 CINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD----RV 96
I D V+ DG R + +N P+P I +GD ++V +++ + +
Sbjct: 1 AIGPVADLTLTNAQVSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKT 60
Query: 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDG 154
+IHWHG +Q+ T +DG + QCPI ++ Y F +P GTF+YHSH+ Q DG
Sbjct: 61 SSIHWHGFFQQGTNWADGPAFVNQCPIASGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDG 119
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLH--GMTDAKFPGNTYANFGTRTESF 212
L GP V+ P DP+ YD D I + DW H +FP FG ++S
Sbjct: 120 LRGPFVVYDPN--DPHASLYDIDNDDTVITLADWYHVAAKLGPRFP------FG--SDST 169
Query: 213 LINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVD 272
LING G + P + KV +G R+RFR++ SC F ++ H M +I D
Sbjct: 170 LING---LGRTTGIA-PSDLAVIKVTQGKRYRFRLVSLSCDPN-HTFSIDNHTMTIIEAD 224
Query: 273 GTPVQPQMFDSITIFPGQ 290
QP DSI IF Q
Sbjct: 225 SINTQPLEVDSIQIFAAQ 242
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 475 FLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTV-T 533
F HP HLHG ++ V P +D V T
Sbjct: 393 FPHPFHLHGHAFAVVRSAGSSVYN------------------------YDNPIFRDVVST 428
Query: 534 IPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTV 569
P +R NNPG W +HCH FH + G V
Sbjct: 429 GQPGDNVTIRFETNNPGPWFLHCHIDFHLDAGFAVV 464
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 116/255 (45%), Gaps = 20/255 (7%)
Query: 42 INGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGD----TIVVDVKNKIVDRVV 97
I D V+ DG R + +N P P I GD ++ ++ N + +
Sbjct: 2 IGPVADLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKST 61
Query: 98 TIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDGL 155
+IHWHG +Q+ T +DG + QCPI ++ Y F +P GTF+YHSH+ Q DGL
Sbjct: 62 SIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDF-QVPDQAGTFWYHSHLSTQYCDGL 120
Query: 156 EGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLIN 215
GP V+ P DP D YD D I + DW H AK F ++ LIN
Sbjct: 121 RGPFVVYDPN--DPAADLYDVDNDDTVITLVDWYH--VAAKLG----PAFPLGADATLIN 172
Query: 216 GRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTP 275
G K + ++ S V G R+RFR++ SC F ++ H M +I D
Sbjct: 173 G----KGRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPN-YTFSIDGHNMTIIETDSIN 227
Query: 276 VQPQMFDSITIFPGQ 290
P + DSI IF Q
Sbjct: 228 TAPLVVDSIQIFAAQ 242
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 525 QPCVKDTVTI--PPNGYTV-VRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
P +D V+ P G V +R +NPG W +HCH FH E G VF
Sbjct: 419 NPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 130/528 (24%), Positives = 213/528 (40%), Gaps = 98/528 (18%)
Query: 57 ADGVE-RPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGV 115
DG++ RP++T N + P P I V +GD + + + N + + ++H+HG++Q T DGV
Sbjct: 16 VDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGV 75
Query: 116 PLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQY 174
P LTQCPI P +T Y F GT++YHSH Q DG++G +I+ D +
Sbjct: 76 PFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIK--------DDSF 127
Query: 175 DTDYPSH-TIIITDWLHGM-TDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPY 232
DY ++ +++W H + TD T+SF+ SV+ + P+P
Sbjct: 128 PYDYDEELSLSLSEWYHDLVTDL-------------TKSFM----SVYNPTG--AEPIPQ 168
Query: 233 S---------KFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDS 283
+ ++V + RI+ F++E H M ++ +DG + + D
Sbjct: 169 NLIVNNTMNLTWEVQPDTTYLLRIVNVGGFVS-QYFWIEDHEMTVVEIDGITTEKNVTDM 227
Query: 284 ITIFPGQYTPVNSAIVLNINLDAAHMGSRRD-RLNILRLRKSLNALDSSDCSDTNPNVCW 342
+ I Q V + + + A M D L+++ LNA + T
Sbjct: 228 LYITVAQRYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQ 287
Query: 343 NHVNS---------LTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQ 393
N+V+S L P ++A + PD V VD D+L
Sbjct: 288 NYVDSIDNFLDDFYLQPYEKEA--IYGEPD--HVITVD---VVMDNL------------- 327
Query: 394 SSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEII 453
N + NNI+ P L + + + + + G + + E EI+
Sbjct: 328 --KNGVNYAFFNNITYTAPKVPTL---MTVLSSGDQANNSEIYGSNTHT--FILEKDEIV 380
Query: 454 KVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAR 513
++ LN T HP HLHG I++ R + L E
Sbjct: 381 EIVLNN------------QDTGTHPFHLHGHAFQTIQRD--------RTYDDALGEVPHS 420
Query: 514 EGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFH 561
PD P +DT+ + P V+R +NPG+W HCH +H
Sbjct: 421 FDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 110/234 (47%), Gaps = 18/234 (7%)
Query: 60 VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLT 119
V+ ++ IN + P+I GDT+ V V N +V +IHWHG++Q+ T DG +T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVT 112
Query: 120 QCPIIPETTYR-YKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDY 178
+CPI P+ R Y++ A YGT +YHSH Q +G+ G + I P YD D
Sbjct: 113 ECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASL-----PYDIDL 167
Query: 179 PSHTIIITDWLHGMTD--AKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFK 236
ITD+ + D F N F +++ LING +V N + Y+
Sbjct: 168 --GVFPITDYYYRAADDLVHFTQNNAPPF---SDNVLINGTAV----NPNTGEGQYANVT 218
Query: 237 VNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
+ G RHR RI+ S + V H M +I D PV DS+ + GQ
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLV-NHTMTVIAADMVPVNAMTVDSLFLAVGQ 271
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 477 HPMHLHGTDIYIIEQG-IIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIP 535
HPMHLHG D ++ + +P A R FV LAR D P +DT +P
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQR-FVFDPAVDLARLNGD-------NPPRRDTTMLP 482
Query: 536 PNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
G+ ++ +NPG W+ HCH +H G++ F
Sbjct: 483 AGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDF 517
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 110/234 (47%), Gaps = 18/234 (7%)
Query: 60 VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLT 119
V+ ++ IN + P+I GDT+ V V N +V +IHWHG++Q+ T DG +T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVT 112
Query: 120 QCPIIPETTYR-YKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDY 178
+CPI P+ R Y++ A YGT +YHSH Q +G+ G + I P YD D
Sbjct: 113 ECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASL-----PYDIDL 167
Query: 179 PSHTIIITDWLHGMTD--AKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFK 236
ITD+ + D F N F +++ LING +V N + Y+
Sbjct: 168 --GVFPITDYYYRAADDLVHFTQNNAPPF---SDNVLINGTAV----NPNTGEGQYANVT 218
Query: 237 VNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
+ G RHR RI+ S + V H M +I D PV DS+ + GQ
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLV-NHTMTVIAADMVPVNAMTVDSLFLAVGQ 271
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 477 HPMHLHGTDIYIIEQG-IIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIP 535
HPMHLHG D ++ + +P A R FV LAR D P +DT +P
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQR-FVFDPAVDLARLNGD-------NPPRRDTTMLP 482
Query: 536 PNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
G+ ++ +NPG W+ HCH +H G++ F
Sbjct: 483 AGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDF 517
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 109/234 (46%), Gaps = 18/234 (7%)
Query: 60 VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLT 119
V+ ++ IN + P+I GDT+ V V N +V +IHWHG+ Q+ T DG +T
Sbjct: 53 VKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVT 112
Query: 120 QCPIIPETTYR-YKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDY 178
+CPI P+ R Y++ A YGT +YHSH Q +G+ G + I P YD D
Sbjct: 113 ECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPASL-----PYDIDL 167
Query: 179 PSHTIIITDWLHGMTD--AKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFK 236
ITD+ + D F N F +++ LING +V N + Y+
Sbjct: 168 --GVFPITDYYYRAADDLVHFTQNNAPPF---SDNVLINGTAV----NPNTGEGQYANVT 218
Query: 237 VNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
+ G RHR RI+ S + V H M +I D PV DS+ + GQ
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLV-NHTMTVIAADMVPVNAMTVDSLFLAVGQ 271
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 477 HPMHLHGTDIYIIEQG-IIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIP 535
HPMHLHG D ++ + +P A R FV LAR D P +DT +P
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQR-FVFDPAVDLARLNGD-------NPPRRDTTMLP 482
Query: 536 PNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF 570
G+ ++ +NPG W+ HCH +H G++ F
Sbjct: 483 AGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDF 517
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 113/247 (45%), Gaps = 36/247 (14%)
Query: 65 LTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPII 124
N ++P+P I V GD + V+V N + TIHWHG+ QR T SDGVP TQ I
Sbjct: 25 FAFNGQVPAPLIHVMEGDDVTVNVTN-MTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIE 83
Query: 125 PETTYRYKFPAMPYGTFFYHSHIGFQK---MDGLEGPLVIRRPKKADPNRDQYDTDYPSH 181
P T+ YKF A P GT +YH H+ + M G+ GPL++ PK P DY
Sbjct: 84 PGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIV-EPKNPLPIEKTVTKDY--- 139
Query: 182 TIIITDWLHGMT----DAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKV 237
++++DW+ + PG+ + + +SF + P+ +V
Sbjct: 140 ILMLSDWVSSWANKPGEGGIPGDVFDYYTINAKSF------------PETQPI-----RV 182
Query: 238 NKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIFPGQYTPVNS 296
KG R R+IG + H + DG P+ +P D++ I PG+
Sbjct: 183 KKGDVIRLRLIGAGDHVHAI--HTHGHISQIAFKDGFPLDKPIKGDTVLIGPGE----RY 236
Query: 297 AIVLNIN 303
++LN++
Sbjct: 237 DVILNMD 243
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETG 565
+P DTV I P V ++ +NPG+W++H H HT G
Sbjct: 221 KPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNG 261
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 17/264 (6%)
Query: 30 NYATIGPACGNCINGTMDDCFKKGCVTADGV-ERPILTINRRLPSPSIQVCRGDTIVVDV 88
+Y P G + + K+ + DGV + ++ +N ++ P+I+ GD I V V
Sbjct: 63 DYEVSTPNTGRTVAYQLTLTEKENWIGPDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTV 122
Query: 89 KNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYR-YKFPAMPYGTFFYHSHI 147
N + ++HWHG+ Q +DG +T+CPI P+ + YKF A YGT +YHSH
Sbjct: 123 INNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPIPPKGGRKTYKFRATQYGTSWYHSHF 182
Query: 148 GFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGT 207
Q +G+ G + I P YD D ++ D+ + D + T +N
Sbjct: 183 SAQYGNGVVGTIQIDGPASL-----PYDIDLGVFPLM--DYYYRSAD-ELVHFTQSNGAP 234
Query: 208 RTESFLINGRSVF-KSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRM 266
+++ L NG + ++G G + + G RHR RII S + V H M
Sbjct: 235 PSDNVLFNGTARHPETGAGQ-----WYNVTLTPGKRHRLRIINTSTDNHFQVSLV-GHNM 288
Query: 267 NLITVDGTPVQPQMFDSITIFPGQ 290
+I D PV S+ + GQ
Sbjct: 289 TVIATDMVPVNAFTVSSLFLAVGQ 312
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 20/136 (14%)
Query: 471 PTSTFLHPMHLHGTDIYIIEQG--IIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528
P + HPMHLHG D ++ + +P A F A++ P L P
Sbjct: 466 PIVSLPHPMHLHGHDFLVLGRSPDELPSAGVRHIF------DPAKDLPRLKGN---NPVR 516
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPT- 587
+D +P G+ ++ +NPG W+ HCH +H G++ DF++ P + T
Sbjct: 517 RDVTMLPAGGWLLLAFKTDNPGAWLFHCHIAWHVSGGLSV--------DFLERPNDLRTQ 568
Query: 588 CNNYLPPVDPNEFKNI 603
N+ D ++F +
Sbjct: 569 LNSNAKRADRDDFNRV 584
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 22/160 (13%)
Query: 66 TINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIP 125
T N +P+P I+V GD + + VKNK+ + TIHWHGV P DG P PI+
Sbjct: 74 TYNGLVPAPKIEVFEGDKLEILVKNKLKE-ATTIHWHGVPV--PPDQDGSP---HDPILA 127
Query: 126 --ETTYRYKFPAMPYGTFFYHSHIGF----QKMDGLEGPLVIRRPKKADPNRDQYDTDYP 179
E YR++ P GT++YH H + Q GL G VI+ K A + + D
Sbjct: 128 GEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKD---- 183
Query: 180 SHTIIITDWLHGMTDAKFPGNTYANF--GTRTESFLINGR 217
++I+D L +A+ P N ++ G E LING+
Sbjct: 184 ---LMISD-LRLDENAQIPNNNLNDWLNGREGEFVLINGQ 219
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 24/109 (22%)
Query: 467 DWIGPTSTFL-HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQ 525
DWI + + HP H+HGT +I + GK+Q+ R
Sbjct: 396 DWIVINKSHMDHPFHIHGTQFELISSKL----------NGKVQKAEFR------------ 433
Query: 526 PCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574
++DT+ + PN +R+ + G+ + HCH + H + GM +V +
Sbjct: 434 -ALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE 481
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 66 TINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIP 125
+ N R+P P++ GD + + N TIH+HGV H DG P + I P
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGA-HPHTIHFHGV---HRATMDGTPGIGAGSIAP 113
Query: 126 ETTYRYKFPAMPYGTFFYHSH---IGFQKMDGLEGPLVIRRPKKADPNRD 172
++ Y+F A P+GT YH H + GL G ++ PK+ P D
Sbjct: 114 GQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIV-EPKEGRPPAD 162
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 47/225 (20%)
Query: 71 LPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYR 130
+P P +++ GDT+ +D+ N DRV+++H HGV + +SDG L+ ++P T R
Sbjct: 55 VPGPVLEMWEGDTLEIDLVN-TTDRVLSLHPHGV--DYDVNSDGT-LMNGSAVMPGQTRR 110
Query: 131 YKFPAM-------------PYGTFFYHSH-IGFQK-----MDGLEGPLVIRRPKKADPNR 171
Y + + G + YH H +G + + GL G LV+RR P R
Sbjct: 111 YTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGDLLPKR 170
Query: 172 DQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVF----------- 220
Q+ T++ D + AN G R E I S F
Sbjct: 171 -QF-------TVVFNDMMINNRAHHDAPTFEANLGERVEWIAIGHGSNFHTFHLHGHRWL 222
Query: 221 --KSGNGTS--NPVPYSKFK-VNKGLRHRFRIIGGSCLACPMLFF 260
++G TS +P P K +N G+ F++I G + M +
Sbjct: 223 DNRTGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMY 267
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 466 IDWI--GPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIR 523
++WI G S F H HLHG HR + R + P
Sbjct: 200 VEWIAIGHGSNF-HTFHLHG----------------HRWLDNRTGMRTSEYDPS------ 236
Query: 524 PQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
P +KD G+ V+ PG+W+ HCH H++ GM +F V
Sbjct: 237 PLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLV 285
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 97/241 (40%), Gaps = 39/241 (16%)
Query: 64 ILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGV--PLLTQC 121
+LT P P+++V DT+ + ++N++ + +HWHG+ P S V P L +
Sbjct: 37 LLTYGGSFPGPTLRVRPRDTVRLTLENRLPE-PTNLHWHGL-----PISPKVDDPFL-EI 89
Query: 122 PIIPETTYRYKFPAMPYGTFFYHSH----IGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177
P TY + P GTF+YH H + Q GL G LV+ A P + +
Sbjct: 90 PPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPELREAE-- 147
Query: 178 YPSHTIIITDW-LHGMTDAKFPGNTYANFGTRTESFLING--RSVFKSGNGTSNPVPYSK 234
H +++ D L G A + N G + L+NG R + T
Sbjct: 148 --EHLLVLKDLALQGGRPAPHTPMDWMN-GKEGDLVLVNGALRPTLVAQKATL------- 197
Query: 235 FKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIFPGQYTP 293
R R++ S A ++ H + LI DG + +P + + PG+
Sbjct: 198 ---------RLRLLNASN-ARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAE 247
Query: 294 V 294
V
Sbjct: 248 V 248
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 518 LATKIRPQP--CVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573
L+ RP P KD V + + V G + HCH + H + GM V +VG
Sbjct: 382 LSVGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 59 GVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGV----------YQRH 108
G+E+ TI P P I++ GDT+ ++ +N + D V++H HG+ R
Sbjct: 31 GLEKGKATI----PGPLIELNEGDTLHIEFENTM-DVPVSLHVHGLDYEISSDGTKQSRS 85
Query: 109 TPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSH-IGFQK-----MDGLEGPLVIR 162
G T +P + A G + YH H +G + +GL GP+++R
Sbjct: 86 DVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVR 145
Query: 163 RPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANF----GTRTESFLI 214
R P+R +HTI+ D MT P +T +F G R E +I
Sbjct: 146 RKGDVLPDR--------THTIVFND----MTINNRPAHTGPDFEATVGDRVEFVMI 189
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 524 PQPCVKDTVTIPPN--GYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
P + + + P + G+ V+ G W+ HCH H++ GM +F V
Sbjct: 219 PSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLV 269
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKD 577
D I P Y + + PGIW++HCH H GM T + V +D
Sbjct: 995 DVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNED 1042
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
DT+ + P + NPG W++ C + H + G+ FQV
Sbjct: 293 DTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQV 335
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKD 577
D I P Y + + PGIW++HCH H GM T + V +D
Sbjct: 1014 DVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNED 1061
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
DT+ + P + NPG W++ C + H + G+ FQV
Sbjct: 312 DTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQV 354
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 34/113 (30%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 356 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 391
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQVG 573
KDTV + N + V V FN+ ++ HCH + H +TGM F VG
Sbjct: 392 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVG 441
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 36/127 (28%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 439
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQV--GDRKDF 578
KDTV + N + V V FN+ ++ HCH + H +TGM F V GD
Sbjct: 440 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQGDHGLS 496
Query: 579 VQTPPEF 585
+ P+F
Sbjct: 497 AWSHPQF 503
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 439
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQV--GDRKDF 578
KDTV + N + V V FN+ ++ HCH + H +TGM F V GD
Sbjct: 440 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHCHLLEHDDTGMMLGFTVLQGDHGLS 496
Query: 579 VQTPPEF 585
+ P F
Sbjct: 497 AWSHPNF 503
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 34/112 (30%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 439
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQV 572
KDTV + N + V V FN+ ++ HCH + H +TGM F V
Sbjct: 440 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 34/112 (30%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 404 WVISGVGDMLLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 439
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQV 572
KDTV + N + V V FN+ ++ HCH + H +TGM F V
Sbjct: 440 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 34/112 (30%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 439
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQV 572
KDTV + N + V V FN+ ++ HCH + H +TGM F V
Sbjct: 440 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 473 STFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV-KDT 531
S LHPMH+H D ++ + + A G R PD + P KD
Sbjct: 490 SPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTP--VRLDPDTPVPLAPNELGHKDV 547
Query: 532 VTIP-PNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPE 584
+P P G V+ G ++ HCH + H + GM + FV PPE
Sbjct: 548 FQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGM--------MRPFVVMPPE 593
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 34/113 (30%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 439
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQVG 573
KDTV + N + V V FN+ ++ H H + H +TGM F VG
Sbjct: 440 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHSHLLEHQDTGMMLGFTVG 489
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 468 WI--GPTSTFLHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
W+ G LHP H+HGT I+ E G P A HRA
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAA--HRA---------------------- 439
Query: 525 QPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQV--GDRKDF 578
KDTV + N + V V FN+ ++ H H + H +TGM F V GD
Sbjct: 440 --GWKDTVKVEGN-VSEVLVKFNHDAPKEHAYMAHSHLLEHEDTGMMLGFTVLQGDHGLS 496
Query: 579 VQTPPEF 585
+ P+F
Sbjct: 497 AWSHPQF 503
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-DGVPLLTQCPIIPE 126
N L P++++ RG + VD+ N++ + T+HWHG+ P DG P IIP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEE-TTLHWHGL---EVPGEVDGGP----QGIIPP 93
Query: 127 TTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIR 162
R + P T ++H H G Q GL G +VI
Sbjct: 94 GGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE 135
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HPMHLHG ++IIE+ P ++A D ++ +KDTV I P
Sbjct: 362 HPMHLHGFPMWIIERKDSP-------------RQVAELAVDNRGRLPTDLGLKDTVLIWP 408
Query: 537 NGYTVVRVHFNNPG---IWIMHCHFIFHTETGM 566
+ V+F+ ++ HCH + H + GM
Sbjct: 409 GETVKIVVNFDAKKRGQLFPFHCHNLEHEDGGM 441
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 81 GDTIVVDVKNKIVDRVVTIHWHGV------YQRHTPHSDGVPLLTQCPIIPETTYRYKFP 134
GDT+++ KN+ R I+ HG+ Y R P GV L PI+P ++YK+
Sbjct: 459 GDTLLIIFKNQ-ASRPYNIYPHGITDVRPLYSRRLP--KGVKHLKDFPILPGEIFKYKWT 515
Query: 135 AMPYG----------TFFYHSHIGFQK--MDGLEGPLVIRRPKKADPNRDQYDTD 177
T +Y S + ++ GL GPL+I + D +Q +D
Sbjct: 516 VTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSD 570
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573
+DT+T+ P V + NPG+WI+ CH GM + +V
Sbjct: 666 EDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVS 710
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 81 GDTIVVDVKNKIVDRVVTIHWHGV------YQRHTPHSDGVPLLTQCPIIPETTYRYKFP 134
GDT+++ KN+ R I+ HG+ Y R P GV L PI+P ++YK+
Sbjct: 458 GDTLLIIFKNQ-ASRPYNIYPHGITDVRPLYSRRLP--KGVKHLKDFPILPGEIFKYKWT 514
Query: 135 AMPYG----------TFFYHSHIGFQK--MDGLEGPLVIRRPKKADPNRDQYDTD 177
T +Y S + ++ GL GPL+I + D +Q +D
Sbjct: 515 VTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSD 569
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573
+DT+T+ P V + NPG+WI+ CH GM + +V
Sbjct: 665 EDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVS 709
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 25/192 (13%)
Query: 29 ENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDV 88
E + GP + TM KK + G +T N +P P++ V GD + + +
Sbjct: 23 EQASKTGP---KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL 79
Query: 89 KNKIVDRVV-TIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH--- 144
N + + + +HG + G LT + T R+K A GTF YH
Sbjct: 80 VNPATNAMPHNVDFHGATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAP 132
Query: 145 -SHIGFQKMDGLEGPL-VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGN 200
+ + + GL G L V+ R DP YD Y TI D + K P
Sbjct: 133 EGMVPWHVVSGLSGTLMVLPRDGLKDPEGKPLHYDRAY---TIGEFD----LYIPKGPDG 185
Query: 201 TYANFGTRTESF 212
Y ++ T ES+
Sbjct: 186 KYKDYATLAESY 197
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 45/164 (27%)
Query: 43 NGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWH 102
+G M F+KG + +P P I+V GDT+ ++ N + D ++H H
Sbjct: 60 DGQMGYGFEKGKAS--------------VPGPLIEVNEGDTLHIEFTNTM-DVRASLHVH 104
Query: 103 GVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAM-------------PYGTFFYHSH-IG 148
G+ + SDG + + + P T Y + G + YH H +G
Sbjct: 105 GL--DYEISSDGT-AMNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVG 161
Query: 149 FQK-----MDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITD 187
+ +GL GP+++RR P+ +HTI+ D
Sbjct: 162 TEHGTGGIRNGLYGPVIVRRKGDVLPD--------ATHTIVFND 197
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 524 PQPCVKDTVTIPPN--GYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
P + + +T P + G+ ++ G W+ HCH H++ GM +F V
Sbjct: 254 PSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLV 304
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 45/164 (27%)
Query: 43 NGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWH 102
+G M F+KG + +P P I+V GDT+ ++ N + D ++H H
Sbjct: 22 DGQMGYGFEKGKAS--------------VPGPLIEVNEGDTLHIEFTNTM-DVRASLHVH 66
Query: 103 GVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAM-------------PYGTFFYHSH-IG 148
G+ + SDG + + + P T Y + G + YH H +G
Sbjct: 67 GLDAEIS--SDGT-AMNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVG 123
Query: 149 FQK-----MDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITD 187
+ +GL GP+++RR P+ +HTI+ D
Sbjct: 124 TEHGTGGIRNGLYGPVIVRRKGDVLPD--------ATHTIVFND 159
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 524 PQPCVKDTVTIPPN--GYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
P + + +T P + G+ ++ G W+ HCH H++ GM +F V
Sbjct: 216 PSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLV 266
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + +++HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + GL G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGLSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPEGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 45/164 (27%)
Query: 43 NGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWH 102
+G M F+KG + +P P I+V GDT+ ++ N + D ++H H
Sbjct: 19 DGQMGYGFEKGKAS--------------VPGPLIEVNEGDTLHIEFTNTM-DVRASLHVH 63
Query: 103 GVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAM-------------PYGTFFYHSH-IG 148
G+ + SDG + + + P T Y + G + YH H +G
Sbjct: 64 GL--DYEISSDGT-AMNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVG 120
Query: 149 FQK-----MDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITD 187
+ +GL GP+++RR P+ +HTI+ D
Sbjct: 121 TEHGTGGIRNGLYGPVIVRRKGDVLPD--------ATHTIVFND 156
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 524 PQPCVKDTVTIPPN--GYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
P + + +T P + G+ ++ G W+ HCH H++ GM +F V
Sbjct: 213 PSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLV 263
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 35 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 94
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + GL G L
Sbjct: 95 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGLSGTL 147
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 148 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 196
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + ++ +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + ++ +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + ++ +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSH----IGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH+ + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHAAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 37 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 96
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 97 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 149
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 150 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 198
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 42 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 101
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 102 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 154
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 155 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 203
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 45/164 (27%)
Query: 43 NGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWH 102
+G M F+KG + +P P I+V GDT+ ++ N + D ++H H
Sbjct: 23 DGQMGYGFEKGKAS--------------VPGPLIEVNEGDTLHIEFTNTM-DVRASLHVH 67
Query: 103 GVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAM-------------PYGTFFYHSH-IG 148
G+ + SDG + + + P T Y + G + YH H +G
Sbjct: 68 GLDFEIS--SDGT-AMNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVG 124
Query: 149 FQK-----MDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITD 187
+ +GL GP+++RR P+ +HTI+ D
Sbjct: 125 TEHGTGGIRNGLYGPVIVRRKGDVLPD--------ATHTIVFND 160
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 524 PQPCVKDTVTIPPN--GYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
P + + +T P + G+ ++ G W+ HCH H++ GM +F V
Sbjct: 217 PSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLV 267
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 22/111 (19%)
Query: 469 IGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528
I + + HP+H+H D +I + G + T + + +
Sbjct: 390 INAGNGWTHPIHIHLVDFKVISR---------------------TSGNNARTVMPYESGL 428
Query: 529 KDTVTIPPNGYTVVRVHFNN-PGIWIMHCHFIFHTETGMNTVFQVGDRKDF 578
KD V + VV H+ PG+++ HCH + H + M F D+
Sbjct: 429 KDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLPDY 479
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPSGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPAGAPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 376 TRDSLFWNDEDEYHR--WFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDR 433
T+ L W EDE + + S P I+ V +++ + + DL +++ P D+
Sbjct: 99 TKLGLHWVGEDEKNMKVFRDSRPARIRKEVEDSLRR----LRVETIDL---EQIHWPDDK 151
Query: 434 SVCGKSAEKGGKLCECVEIIKVGLNQVA--EIIFIDWIGPTSTFLHPMHLHGTDIYIIEQ 491
+ +SA + KL + +I +G++ + ++ + P +T P++L IE+
Sbjct: 152 TPIDESARELQKLHQDGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFER---TIEK 208
Query: 492 GIIPVAEDHRAFV 504
I+P AE H A V
Sbjct: 209 DILPYAEKHNAVV 221
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPHHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 25/192 (13%)
Query: 29 ENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDV 88
E + GP + TM KK + G +T N +P P++ V GD + + +
Sbjct: 23 EQASKTGP---KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL 79
Query: 89 KNKIVDRVV-TIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH--- 144
N + + + +HG + G LT + T R+K A GTF YH
Sbjct: 80 VNPATNAMPHNVDFHGATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAP 132
Query: 145 -SHIGFQKMDGLEGPL-VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGN 200
+ + + G G L V+ R DP YD Y TI D + K P
Sbjct: 133 EGMVPWHVVSGQSGTLMVLPRDGLKDPEGKPLHYDRAY---TIGEFD----LYIPKGPDG 185
Query: 201 TYANFGTRTESF 212
Y ++ T ES+
Sbjct: 186 KYKDYATLAESY 197
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGASGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF YH + + + G G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYHCAPEGMVPWHVVSGQSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPEGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|1N8I|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|B Chain B, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
Length = 741
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 369 AVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEME 428
A D F DE H ++ P V K + + P+ + +D + +
Sbjct: 449 AADRVVFINTGFLDRTGDEIHTSMEAGPMVRKGTMKSQ------PWILAYEDHNVDAGLA 502
Query: 429 CP-KDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWI-GPTSTFLHPMHLHGTDI 486
R+ GK +L ++++ + Q W+ PT+ LH +H H D+
Sbjct: 503 AGFSGRAQVGKGMWTMTELM--ADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDV 560
Query: 487 YIIEQGIIPVAEDHRAFVGKL 507
++QG+ A RA + +L
Sbjct: 561 AAVQQGL---AGKRRATIEQL 578
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHGVYQRHTPHSDGVP 116
DGVE T + +P I+V GDT+ V+ N V + +H + +
Sbjct: 54 DGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATF- 112
Query: 117 LLTQCPIIPETTYRYKFPAMPYGTFFYH---SHIGFQKMDGLEGPLVIRRPKKADPNRDQ 173
P T + F A+ G + YH + +G +G+ G L++ PK+ P D+
Sbjct: 113 ------TAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYG-LILVEPKEGLPKVDK 165
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHGVYQRHTPHSDGV 115
ADGVE + +P I+V GD I ++ N ++ I H V P
Sbjct: 43 ADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT---GPGGGAE 99
Query: 116 PLLTQCPIIPETTYRYKFPAMPYGTFFYH---SHIGFQKMDGLEGPLVIRRPKKA 167
T P T + F A+ G + YH + +G +G+ G L++ PK+
Sbjct: 100 SSFTA----PGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYG-LILVEPKEG 149
>pdb|2GQ3|A Chain A, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
pdb|2GQ3|B Chain B, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
Length = 729
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 369 AVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEME 428
A D F DE H ++ P V K + + P+ + +D + +
Sbjct: 451 AADRVVFINTGFLDRTGDEIHTSMEAGPMVRKGTMKSQ------PWILAYEDHNVDAGLA 504
Query: 429 CP-KDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWI-GPTSTFLHPMHLHGTDI 486
R+ GK +L ++++ + Q W+ PT+ LH +H H D+
Sbjct: 505 AGFSGRAQVGKGMWTMTELM--ADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDV 562
Query: 487 YIIEQGIIPVAEDHRAFVGKL 507
++QG+ A RA + +L
Sbjct: 563 AAVQQGL---AGKRRATIEQL 580
>pdb|3S9I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With 2-4-dioxo-4-phenylbutanoic Acid
Inhibitor
pdb|3S9Z|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-mehtylphenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(3-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SB0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-chloro-6-fluoro-3-methylphenyl)-2,4-dioxobutanoic
Acid Inhibitor
Length = 741
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 369 AVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEME 428
A D F DE H ++ P V K + + P+ + +D + +
Sbjct: 449 AADRVVFINTGFLDRTGDEIHTSMEAGPMVRKGTMKSQ------PWILAYEDHNVDAGLA 502
Query: 429 CP-KDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWI-GPTSTFLHPMHLHGTDI 486
R+ GK +L ++++ + Q W+ PT+ LH +H H D+
Sbjct: 503 AGFSGRAQVGKGMWTMTELM--ADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDV 560
Query: 487 YIIEQGIIPVAEDHRAFVGKL 507
++QG+ A RA + +L
Sbjct: 561 AAVQQGL---AGKRRATIEQL 578
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAF-VGKL 507
E KVG ++ II PT HP+HLH ++ D R F + +
Sbjct: 397 VTETPKVGTTEIWSII-----NPTRG-THPIHLHLVSFRVL---------DRRPFDIARY 441
Query: 508 QE--RLAREGPDLATKIRPQPCVKD-TVTIPPNGYTVVRVHFN---NPGIWIMHCHFIFH 561
QE L+ GP + P P K TI + V+R+ G ++ HCH + H
Sbjct: 442 QESGELSYTGP----AVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEH 497
Query: 562 TETGMNTVFQVGD 574
T+ M + D
Sbjct: 498 TDYDMMRPMDITD 510
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 22/176 (12%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 95
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFY----HSHIGFQKMDGLEGPL 159
+ G LT + T R+K A GTF Y + + + G+ G L
Sbjct: 96 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYVCAPEGMVPWHVVSGMSGTL 148
Query: 160 -VIRRPKKADPNRD--QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
V+ R DP YD Y TI D + K P Y ++ T ES+
Sbjct: 149 MVLPRDGLKDPQGKPLHYDRAY---TIGEFD----LYIPKGPDGKYKDYATLAESY 197
>pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|B Chain B, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|C Chain C, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|D Chain D, Xylose Isomerase From Bacillus Stearothermophilus
Length = 440
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 142 FYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNT 201
F H + + K G +G +I PK +P + QYD D + + + G+ D F N
Sbjct: 209 FLHMAVDYAKEIGFDGQFLIE-PKPKEPTKHQYDFDVATALAFLQTY--GLKD-YFKFNI 264
Query: 202 YANFGT 207
AN T
Sbjct: 265 EANHAT 270
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 45 TMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHG 103
TM KK + G +T N +P P++ V GD + + + N + + + +HG
Sbjct: 37 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG 96
Query: 104 VYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH 144
+ G LT + T R+K A GTF YH
Sbjct: 97 ATG-----ALGGAKLTNVNPGEQATLRFK--ADRSGTFVYH 130
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 51 KKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTP 110
KK DG +T N +P P++ V GD I + + N + + H V
Sbjct: 38 KKMVADDDGTTAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMP----HNVDFHAAT 93
Query: 111 HSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYH----SHIGFQKMDGLEGPLVI 161
+ G LTQ ++P +F A GTF YH + + + G+ G L++
Sbjct: 94 GALGGAGLTQ--VVPGQEAVLRFKADRSGTFVYHCAPAGMVPWHVVSGMNGALMV 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,718,022
Number of Sequences: 62578
Number of extensions: 933966
Number of successful extensions: 1864
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 174
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)