Query psy4302
Match_columns 613
No_of_seqs 250 out of 1788
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:05:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 1.2E-96 3E-101 812.5 53.5 479 19-591 27-534 (539)
2 PLN02991 oxidoreductase 100.0 1E-94 2.2E-99 793.5 51.5 486 19-590 26-532 (543)
3 PLN02354 copper ion binding / 100.0 9.5E-95 2.1E-99 798.5 50.7 485 19-592 25-542 (552)
4 TIGR03389 laccase laccase, pla 100.0 4.5E-94 9.7E-99 798.4 53.7 493 20-588 2-539 (539)
5 PLN00044 multi-copper oxidase- 100.0 4.2E-94 9.2E-99 792.6 51.8 507 17-593 23-559 (596)
6 PLN02191 L-ascorbate oxidase 100.0 1.1E-93 2.3E-98 795.5 52.3 503 19-595 21-568 (574)
7 TIGR03388 ascorbase L-ascorbat 100.0 1.3E-93 2.9E-98 794.2 52.7 493 21-589 1-539 (541)
8 PLN02168 copper ion binding / 100.0 1.8E-93 3.9E-98 785.1 51.8 483 19-589 24-542 (545)
9 PLN02792 oxidoreductase 100.0 2.3E-93 5.1E-98 783.8 51.3 485 21-591 16-526 (536)
10 PLN02604 oxidoreductase 100.0 9.2E-93 2E-97 789.7 53.5 503 18-591 21-564 (566)
11 KOG1263|consensus 100.0 1.1E-89 2.5E-94 749.3 50.8 502 17-592 24-559 (563)
12 TIGR03390 ascorbOXfungal L-asc 100.0 9.3E-88 2E-92 745.4 48.6 470 55-578 20-537 (538)
13 TIGR01480 copper_res_A copper- 100.0 2.4E-72 5.1E-77 621.9 43.8 430 22-572 46-586 (587)
14 PRK10965 multicopper oxidase; 100.0 9.3E-69 2E-73 589.1 44.5 407 59-572 62-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1E-66 2.2E-71 568.3 43.8 378 58-574 61-469 (471)
16 COG2132 SufI Putative multicop 100.0 2.2E-55 4.9E-60 480.8 41.3 399 53-573 43-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 4.7E-43 1E-47 363.3 25.6 257 17-323 23-297 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 9.2E-35 2E-39 258.4 10.7 110 54-164 6-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 3.3E-28 7.2E-33 223.9 10.3 109 445-574 28-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 1.7E-23 3.7E-28 197.2 13.6 139 180-323 2-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 7.6E-19 1.7E-23 162.1 11.9 107 55-162 34-148 (148)
22 TIGR01480 copper_res_A copper- 99.6 2.5E-15 5.5E-20 167.6 10.0 102 58-162 481-587 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.4 3.7E-11 8E-16 125.2 23.0 92 453-574 204-297 (311)
24 PRK10965 multicopper oxidase; 99.2 1.9E-09 4.2E-14 119.7 21.9 230 59-306 209-496 (523)
25 PRK10883 FtsI repressor; Provi 99.1 1.9E-09 4E-14 118.7 17.9 216 59-307 206-442 (471)
26 PLN02835 oxidoreductase 99.1 1.2E-08 2.7E-13 113.7 22.0 238 62-307 191-490 (539)
27 TIGR03096 nitroso_cyanin nitro 99.1 7.8E-10 1.7E-14 99.1 10.0 98 18-147 21-120 (135)
28 TIGR03389 laccase laccase, pla 99.0 3.1E-08 6.7E-13 111.2 22.1 238 63-307 167-498 (539)
29 COG2132 SufI Putative multicop 98.9 7.9E-08 1.7E-12 105.9 19.3 228 58-307 185-427 (451)
30 TIGR03388 ascorbase L-ascorbat 98.9 1.5E-07 3.3E-12 105.6 20.3 223 75-307 204-502 (541)
31 PLN02168 copper ion binding / 98.8 7.7E-07 1.7E-11 99.3 21.8 237 63-307 189-494 (545)
32 PLN02991 oxidoreductase 98.8 9.7E-07 2.1E-11 98.4 22.3 238 62-307 190-489 (543)
33 PLN02354 copper ion binding / 98.7 6.4E-07 1.4E-11 100.3 20.5 238 63-307 190-497 (552)
34 PLN02604 oxidoreductase 98.7 6.6E-07 1.4E-11 100.9 20.0 224 74-307 224-525 (566)
35 PF07731 Cu-oxidase_2: Multico 98.7 1.8E-08 3.9E-13 92.5 5.8 89 73-163 33-136 (138)
36 PLN02792 oxidoreductase 98.7 1.6E-06 3.5E-11 96.7 21.7 238 62-307 179-482 (536)
37 TIGR03390 ascorbOXfungal L-asc 98.7 1.4E-06 3.1E-11 97.6 20.2 237 63-307 172-510 (538)
38 PLN02191 L-ascorbate oxidase 98.5 6.6E-06 1.4E-10 92.8 20.1 234 65-307 217-525 (574)
39 PF07732 Cu-oxidase_3: Multico 98.4 9.7E-07 2.1E-11 78.6 9.1 90 451-575 26-116 (117)
40 PLN00044 multi-copper oxidase- 98.4 2.3E-05 4.9E-10 88.2 19.7 225 74-307 217-512 (596)
41 TIGR02656 cyanin_plasto plasto 98.0 2.6E-05 5.6E-10 67.3 8.6 82 73-162 16-99 (99)
42 PF00394 Cu-oxidase: Multicopp 97.8 4.8E-05 1E-09 71.7 7.7 91 451-572 60-155 (159)
43 PF00127 Copper-bind: Copper b 97.8 4.2E-05 9.1E-10 66.0 6.5 83 73-162 16-99 (99)
44 TIGR03095 rusti_cyanin rusticy 97.8 0.00013 2.9E-09 67.6 10.1 91 451-572 52-147 (148)
45 PRK02710 plastocyanin; Provisi 97.6 0.00028 6E-09 63.1 8.8 74 73-162 46-119 (119)
46 KOG1263|consensus 97.6 0.0023 4.9E-08 71.6 17.9 238 63-307 193-514 (563)
47 PF13473 Cupredoxin_1: Cupredo 97.6 0.0001 2.2E-09 64.2 5.6 84 60-161 21-104 (104)
48 PRK02888 nitrous-oxide reducta 97.5 0.00038 8.2E-09 77.6 10.3 96 55-163 534-634 (635)
49 TIGR02657 amicyanin amicyanin. 97.3 0.0012 2.7E-08 54.9 8.7 74 73-162 10-83 (83)
50 TIGR02656 cyanin_plasto plasto 97.2 0.0021 4.6E-08 55.4 8.4 86 448-573 14-99 (99)
51 TIGR03094 sulfo_cyanin sulfocy 97.1 0.0042 9.2E-08 58.1 10.4 96 65-164 75-187 (195)
52 TIGR02375 pseudoazurin pseudoa 97.1 0.0028 6.1E-08 56.1 8.9 75 73-164 14-89 (116)
53 PF06525 SoxE: Sulfocyanin (So 97.1 0.0092 2E-07 57.0 12.5 101 63-164 74-188 (196)
54 TIGR03102 halo_cynanin halocya 96.9 0.0066 1.4E-07 53.7 9.6 74 73-162 41-115 (115)
55 COG3794 PetE Plastocyanin [Ene 96.7 0.0095 2.1E-07 53.5 8.6 76 73-163 52-128 (128)
56 TIGR03096 nitroso_cyanin nitro 96.4 0.013 2.7E-07 53.1 7.7 59 452-558 62-120 (135)
57 PF00127 Copper-bind: Copper b 95.1 0.26 5.7E-06 42.3 10.2 40 530-573 60-99 (99)
58 PRK02888 nitrous-oxide reducta 94.7 0.12 2.7E-06 58.0 9.0 78 451-573 555-633 (635)
59 PF13473 Cupredoxin_1: Cupredo 94.3 0.17 3.8E-06 43.8 7.3 63 451-561 35-97 (104)
60 PRK02710 plastocyanin; Provisi 93.9 0.34 7.3E-06 43.2 8.5 37 533-573 83-119 (119)
61 TIGR02375 pseudoazurin pseudoa 92.7 0.97 2.1E-05 40.1 9.3 32 542-575 58-89 (116)
62 PF00116 COX2: Cytochrome C ox 91.0 1.7 3.6E-05 38.9 8.9 60 73-147 45-104 (120)
63 COG4454 Uncharacterized copper 88.1 2 4.4E-05 39.6 7.3 46 528-573 112-157 (158)
64 COG4454 Uncharacterized copper 84.0 3.9 8.4E-05 37.8 6.9 88 70-162 59-157 (158)
65 TIGR02657 amicyanin amicyanin. 82.0 10 0.00022 31.2 8.3 28 541-572 55-82 (83)
66 TIGR03102 halo_cynanin halocya 82.0 5.9 0.00013 35.0 7.2 34 536-573 82-115 (115)
67 TIGR02695 azurin azurin. Azuri 80.8 9.2 0.0002 34.2 7.9 39 122-161 84-125 (125)
68 PRK10378 inactive ferrous ion 80.7 13 0.00028 39.8 10.5 83 65-164 34-118 (375)
69 TIGR02866 CoxB cytochrome c ox 79.9 6.3 0.00014 38.5 7.4 75 74-164 117-193 (201)
70 PF00116 COX2: Cytochrome C ox 78.9 19 0.0004 32.1 9.4 75 449-572 44-119 (120)
71 COG1622 CyoA Heme/copper-type 78.1 6.3 0.00014 39.8 6.8 77 74-165 137-214 (247)
72 TIGR02866 CoxB cytochrome c ox 78.0 7.6 0.00016 37.9 7.3 76 451-577 117-195 (201)
73 PF06525 SoxE: Sulfocyanin (So 69.2 40 0.00087 32.6 9.5 101 451-574 86-187 (196)
74 COG4263 NosZ Nitrous oxide red 66.8 6.6 0.00014 42.3 4.0 77 75-162 559-636 (637)
75 PF11614 FixG_C: IG-like fold 57.4 28 0.00061 30.6 5.9 50 242-304 34-84 (118)
76 TIGR03094 sulfo_cyanin sulfocy 55.4 1.5E+02 0.0033 28.4 10.4 102 451-574 85-186 (195)
77 COG1622 CyoA Heme/copper-type 53.8 48 0.001 33.5 7.4 78 451-577 137-215 (247)
78 PF05938 Self-incomp_S1: Plant 49.3 97 0.0021 26.8 7.9 69 85-164 2-71 (110)
79 TIGR01433 CyoA cytochrome o ub 47.6 40 0.00086 33.6 5.7 77 451-576 139-216 (226)
80 MTH00047 COX2 cytochrome c oxi 42.1 1.2E+02 0.0026 29.4 8.0 76 451-575 116-192 (194)
81 PF05506 DUF756: Domain of unk 40.6 1.5E+02 0.0033 24.5 7.5 56 72-135 7-65 (89)
82 PF12690 BsuPI: Intracellular 40.5 95 0.0021 25.6 6.0 58 74-143 16-80 (82)
83 PF14344 DUF4397: Domain of un 38.1 1.5E+02 0.0033 25.8 7.6 20 244-263 3-22 (122)
84 COG3794 PetE Plastocyanin [Ene 38.0 1.8E+02 0.0038 26.3 7.7 29 544-574 100-128 (128)
85 PTZ00047 cytochrome c oxidase 35.9 1.8E+02 0.0039 27.4 7.6 78 448-574 70-148 (162)
86 PRK05461 apaG CO2+/MG2+ efflux 34.7 87 0.0019 28.2 5.3 47 242-292 32-82 (127)
87 MTH00140 COX2 cytochrome c oxi 33.0 1.5E+02 0.0032 29.5 7.3 78 449-575 138-216 (228)
88 PF04379 DUF525: Protein of un 31.9 1.1E+02 0.0023 25.9 5.0 47 242-292 15-65 (90)
89 MTH00047 COX2 cytochrome c oxi 28.7 3.1E+02 0.0067 26.6 8.4 74 75-164 117-192 (194)
90 MTH00129 COX2 cytochrome c oxi 28.4 1.6E+02 0.0034 29.5 6.5 77 449-574 138-215 (230)
91 TIGR01432 QOXA cytochrome aa3 28.2 1E+02 0.0023 30.4 5.2 77 451-576 130-207 (217)
92 COG1188 Ribosome-associated he 27.9 41 0.00089 28.9 1.9 31 63-93 34-64 (100)
93 MTH00098 COX2 cytochrome c oxi 27.7 1.8E+02 0.0038 29.1 6.7 77 449-574 138-215 (227)
94 PF10633 NPCBM_assoc: NPCBM-as 27.4 2.3E+02 0.0049 22.7 6.2 50 237-294 1-54 (78)
95 MTH00185 COX2 cytochrome c oxi 26.5 1.9E+02 0.0042 28.8 6.8 77 449-574 138-215 (230)
96 TIGR02745 ccoG_rdxA_fixG cytoc 26.4 1.5E+02 0.0032 32.7 6.4 51 242-304 349-399 (434)
97 cd00918 Der-p2_like Several gr 26.0 2.7E+02 0.0059 24.7 6.9 23 112-135 65-87 (120)
98 PF12690 BsuPI: Intracellular 24.9 2.6E+02 0.0057 23.0 6.2 57 242-304 3-70 (82)
99 PF15415 DUF4622: Protein of u 24.4 1.8E+02 0.0038 29.1 5.7 44 233-277 94-137 (310)
100 MTH00023 COX2 cytochrome c oxi 24.2 2.1E+02 0.0046 28.7 6.6 78 449-575 149-227 (240)
101 PF14874 PapD-like: Flagellar- 23.5 3E+02 0.0066 22.9 6.7 56 236-303 15-72 (102)
102 cd00916 Npc2_like Niemann-Pick 23.4 2.7E+02 0.0058 24.7 6.5 17 119-135 75-91 (123)
103 PF08329 ChitinaseA_N: Chitina 23.3 1.4E+02 0.0031 27.1 4.6 79 180-280 39-119 (133)
104 COG2967 ApaG Uncharacterized p 23.3 85 0.0018 27.8 3.0 47 86-133 34-85 (126)
105 MTH00038 COX2 cytochrome c oxi 22.9 2.4E+02 0.0051 28.2 6.6 78 448-574 137-215 (229)
106 PF07691 PA14: PA14 domain; I 22.7 4.9E+02 0.011 22.9 8.4 61 234-304 53-120 (145)
107 PF09394 Inhibitor_I42: Chagas 22.5 1.3E+02 0.0028 24.8 4.1 58 76-141 1-67 (92)
108 MTH00117 COX2 cytochrome c oxi 21.9 2.8E+02 0.0061 27.6 6.9 77 449-574 138-215 (227)
109 TIGR03079 CH4_NH3mon_ox_B meth 21.3 2.3E+02 0.005 30.2 6.2 83 65-160 290-396 (399)
110 PF10989 DUF2808: Protein of u 20.2 1.3E+02 0.0029 27.6 3.9 26 120-145 96-125 (146)
111 KOG4078|consensus 20.0 61 0.0013 29.4 1.5 37 237-276 120-156 (173)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.2e-96 Score=812.47 Aligned_cols=479 Identities=21% Similarity=0.328 Sum_probs=364.9
Q ss_pred CceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCcee
Q psy4302 19 PMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVT 98 (613)
Q Consensus 19 ~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~t 98 (613)
..+++|+|+|.+.. +++||++|.+|+||||+|||+|++++||+|+|+|+|+|+ ++|+
T Consensus 27 ~~~~~y~~~v~~~~----------------------~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~-~~tt 83 (539)
T PLN02835 27 DPYKYYTWTVTYGT----------------------ISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLD-QPFL 83 (539)
T ss_pred CcEEEEEEEEEEEE----------------------eccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCC-CCCc
Confidence 47899999999853 678999999999999999999999999999999999998 8999
Q ss_pred EEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEee-cCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCC-CC
Q psy4302 99 IHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQY-DT 176 (613)
Q Consensus 99 iHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~-~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~-d~ 176 (613)
|||||++|++++||||+++ |||||+||++|+|+|++ +++||||||||++.|+++||+|+|||+++++. +. +| .+
T Consensus 84 iHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~-~~--p~~~~ 159 (539)
T PLN02835 84 LTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRI-PI--PFPLP 159 (539)
T ss_pred EEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCC-Cc--CCCCC
Confidence 9999999999999999999 99999999999999997 58999999999999999999999999865322 21 12 12
Q ss_pred CCCceEEEEeeeccCCCCcccCCCCCCCCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCc
Q psy4302 177 DYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACP 256 (613)
Q Consensus 177 d~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~ 256 (613)
| .|.+|+++||+++...........+.....++.+||||+.. +.++|++|++|||||||++... .
T Consensus 160 d-~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~-------------~~~~v~~G~~yRlRliNa~~~~-~ 224 (539)
T PLN02835 160 D-GDFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQ-------------STFSGDQGKTYMFRISNVGLST-S 224 (539)
T ss_pred C-ceEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccC-------------ceEEECCCCEEEEEEEEcCCCc-c
Confidence 3 26899999999987543221111222345789999999987 7899999999999999999985 8
Q ss_pred EEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCccC---------cCCCCceeEEEEecccCCC
Q psy4302 257 MLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAH---------MGSRRDRLNILRLRKSLNA 327 (613)
Q Consensus 257 ~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~~---------~~~~~~~~ail~Y~~~~~~ 327 (613)
+.|+|+||+|+||++||.+++|..++.|.|++|||| ||+|+++++.+. ........|||+|++...+
T Consensus 225 ~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRy----dvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~ 300 (539)
T PLN02835 225 LNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSV----AVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTP 300 (539)
T ss_pred EEEEECCCEEEEEEECCccCCCceeeEEEECcCceE----EEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCC
Confidence 999999999999999999999999999999999999 999999987663 1234567899999874221
Q ss_pred CCCCCCCCCC--CCcccccCc----CCCCCCcccccc--------CCCCceEEEEEEeeeeeccCccccCCcccceeeee
Q psy4302 328 LDSSDCSDTN--PNVCWNHVN----SLTPATEKATVL--------KAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQ 393 (613)
Q Consensus 328 ~~~~~~~~~~--~~~~~~~l~----~~~~~~~~~~~~--------~~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (613)
.....+..+. ...+..+.. .+.+.... .. ...++.++.+...+
T Consensus 301 ~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~--------------------- 357 (539)
T PLN02835 301 ASGPLPALPSGELHWSMRQARTYRWNLTASAAR--PNPQGSFHYGKITPTKTIVLANSA--------------------- 357 (539)
T ss_pred CCCCCCCCCccccccccchhhccccccCccccC--CCCCccccccccCCCceEEEeccc---------------------
Confidence 1111011010 000111100 01110000 00 00112222111100
Q ss_pred cCCCceeeEEecceeccCCCCCcccccCCCCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCCCC
Q psy4302 394 SSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPTS 473 (613)
Q Consensus 394 ~~~~~~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~~~ 473 (613)
...++...|.+|+++|..|..|+|.+.+...++.||...-..-.. +...+.++.++.++.|++|||+|+|. .
T Consensus 358 ~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~~Veivi~N~-~--- 429 (539)
T PLN02835 358 PLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPS----GGPAFVATSVMQTSLHDFLEVVFQNN-E--- 429 (539)
T ss_pred cccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCC----CCccccCCeEEEcCCCCEEEEEEECC-C---
Confidence 001234689999999998999987654433345565332100000 02245578899999999999999998 3
Q ss_pred CCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCcceeE
Q psy4302 474 TFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWI 553 (613)
Q Consensus 474 ~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNPG~Wl 553 (613)
...||||||||+||||++|. +.++ ......+|+.+|++||||.||++||++|||+|||||.|+
T Consensus 430 ~~~HP~HLHGh~F~Vlg~G~-g~~~----------------~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl 492 (539)
T PLN02835 430 KTMQSWHLDGYDFWVVGYGS-GQWT----------------PAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWN 492 (539)
T ss_pred CCCCCCCCCCccEEEEeccC-CCCC----------------cccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEee
Confidence 45899999999999999986 4432 011123578999999999999999999999999999999
Q ss_pred EeechhhhhhcCceEEEEeccC----CCCCCCCCCCCCCCCC
Q psy4302 554 MHCHFIFHTETGMNTVFQVGDR----KDFVQTPPEFPTCNNY 591 (613)
Q Consensus 554 ~HCHi~~H~~~GM~~~~~V~~~----~~~~~~p~~~p~C~~~ 591 (613)
|||||++|+..||+++|+|++. ++++++|+++|+||.-
T Consensus 493 ~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~ 534 (539)
T PLN02835 493 MRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKA 534 (539)
T ss_pred eeecchhhhhcccEEEEEEccCCCccccccCCCccccccccC
Confidence 9999999999999999999876 6899999999999844
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1e-94 Score=793.47 Aligned_cols=486 Identities=18% Similarity=0.259 Sum_probs=358.8
Q ss_pred CceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCcee
Q psy4302 19 PMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVT 98 (613)
Q Consensus 19 ~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~t 98 (613)
..+++|+|+|.+.. +++||++|.+++||||+|||+|++++||+|+|+|+|+|+ ++|+
T Consensus 26 ~~~~~~~~~vt~~~----------------------~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~-~~tt 82 (543)
T PLN02991 26 DPYRFFEWHVTYGN----------------------ISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLD-EPFL 82 (543)
T ss_pred CceEEEEEEEEEEE----------------------eCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCC-CCcc
Confidence 56789999999853 689999999999999999999999999999999999998 8999
Q ss_pred EEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEee-cCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCC
Q psy4302 99 IHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177 (613)
Q Consensus 99 iHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~-~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d 177 (613)
|||||++|.+++||||+++ |||||+||++|+|+|++ +++||||||||.+.|+++||+|+|||+++++.......+ |
T Consensus 83 iHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~--d 159 (543)
T PLN02991 83 ISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAP--A 159 (543)
T ss_pred EEECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccc--c
Confidence 9999999999999999998 99999999999999999 489999999999999999999999999874322111122 2
Q ss_pred CCceEEEEeeeccCCCCcccCCCCCCCCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcE
Q psy4302 178 YPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPM 257 (613)
Q Consensus 178 ~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~ 257 (613)
.|.+|+|+||+++...........+...+.++++||||++. .+.++|++|++|||||||++... .+
T Consensus 160 -~d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~------------~~~~~v~~G~~yRlRiINa~~~~-~~ 225 (543)
T PLN02991 160 -DDYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILINGRGS------------GATLNIEPGKTYRLRISNVGLQN-SL 225 (543)
T ss_pred -ceeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEEccCCC------------CceEEECCCCEEEEEEEeccCCe-eE
Confidence 26899999999986533221111122235789999999975 15799999999999999999985 89
Q ss_pred EEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCccC---------cCCCCceeEEEEecccCCCC
Q psy4302 258 LFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAH---------MGSRRDRLNILRLRKSLNAL 328 (613)
Q Consensus 258 ~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~~---------~~~~~~~~ail~Y~~~~~~~ 328 (613)
.|+|+||+|+||++||.+++|..+++|.|++|||| ||+|+++++.++ ........|||+|++...+.
T Consensus 226 ~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRy----dvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~ 301 (543)
T PLN02991 226 NFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSY----SVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPV 301 (543)
T ss_pred EEEECCCEEEEEEeCCccccceeeeEEEEcCCcEE----EEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCC
Confidence 99999999999999999999999999999999999 999999998873 12345678999999753211
Q ss_pred CCCCCCCCC---C---CcccccCcCCCCCCccccccCCCCceEEEEEEeeee-eccCccccCCcccceeeeecCCCceee
Q psy4302 329 DSSDCSDTN---P---NVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYH-FTRDSLFWNDEDEYHRWFQSSPNVIKT 401 (613)
Q Consensus 329 ~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~~~~~pd~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (613)
....+..+. . ..+..+ ..+.+.... ..+...+....+.++... .... +. . ..+...
T Consensus 302 ~~~~p~~p~~~~~~~~~~~~~~-~~l~p~~~~--~~p~~~~~~~~~~~~~~~~~~~~--~~----------~--~~g~~~ 364 (543)
T PLN02991 302 SGPIPDGPIQLSWSFDQARAIK-TNLTASGPR--PNPQGSYHYGKINITRTIRLANS--AG----------N--IEGKQR 364 (543)
T ss_pred CCCCCCCCccccccccchhhhh-hcccCCCCC--CCCCccccccccccceeEEEeec--cc----------c--cCceEE
Confidence 100011100 0 000000 111111000 000000000001111000 0000 00 0 123568
Q ss_pred EEecceeccCCCCCcccccCCCCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeee
Q psy4302 402 HVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHL 481 (613)
Q Consensus 402 ~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHL 481 (613)
|.||+++|..|..|+|...+....+.|....-..-.++ ......+.++.++.|++|||+|+|. . ...|||||
T Consensus 365 ~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~VeiViqn~-~---~~~HP~HL 436 (543)
T PLN02991 365 YAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTN----GAIFPVTSVMQTDYKAFVEIVFENW-E---DIVQTWHL 436 (543)
T ss_pred EEECCCccCCCCCChhhhhhhcccCccccccccccCCC----CccccCCcEEEcCCCCEEEEEEeCC-C---CCCCCeee
Confidence 99999999999999885433211122211100000000 1112346788999999999999998 3 45999999
Q ss_pred ecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCcceeEEeechhhh
Q psy4302 482 HGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFH 561 (613)
Q Consensus 482 HG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H 561 (613)
|||+||||++|. +.++. .+...+|+.||++|||+.||++||++|||+|||||.|+|||||.+|
T Consensus 437 HGh~F~Vvg~G~-G~f~~----------------~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h 499 (543)
T PLN02991 437 DGYSFYVVGMEL-GKWSA----------------ASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWER 499 (543)
T ss_pred CCcceEEEEeCC-CCCCc----------------ccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCcccc
Confidence 999999999986 55540 1223579999999999999999999999999999999999999999
Q ss_pred hhcCceEEEEecc----CCCCCCCCCCCCCCCC
Q psy4302 562 TETGMNTVFQVGD----RKDFVQTPPEFPTCNN 590 (613)
Q Consensus 562 ~~~GM~~~~~V~~----~~~~~~~p~~~p~C~~ 590 (613)
+..||++++.|.+ .++++++|+++|+||.
T Consensus 500 ~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~ 532 (543)
T PLN02991 500 QYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGR 532 (543)
T ss_pred ccccEEEEEEecCCCCccccccCCCcccCcccc
Confidence 9999999998764 3468899999999973
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=9.5e-95 Score=798.49 Aligned_cols=485 Identities=19% Similarity=0.269 Sum_probs=362.0
Q ss_pred CceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCcee
Q psy4302 19 PMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVT 98 (613)
Q Consensus 19 ~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~t 98 (613)
..+.+|+|+|++.. +++||++|.+++||||+|||+|+|++||+|+|+|+|+|+ ++|+
T Consensus 25 ~~~~~y~~~v~~~~----------------------~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~-~~tt 81 (552)
T PLN02354 25 DPYFFFTWNVTYGT----------------------ASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD-EPFL 81 (552)
T ss_pred ccEEEEEEEEEEEE----------------------ecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC-CCcc
Confidence 46789999999853 678999999999999999999999999999999999997 8999
Q ss_pred EEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEee-cCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCC
Q psy4302 99 IHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177 (613)
Q Consensus 99 iHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~-~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d 177 (613)
|||||++|++++||||+|+ |||||+||++|+|+|++ +++||||||||++.|+++||+|+|||+++... + .+|+..
T Consensus 82 iHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~-~--~p~~~~ 157 (552)
T PLN02354 82 LTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLI-P--VPYADP 157 (552)
T ss_pred cccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCC-C--CCCCCc
Confidence 9999999999999999999 99999999999999998 58999999999999999999999999987432 1 124322
Q ss_pred CCceEEEEeeeccCCCCcccCCCCCCCCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcE
Q psy4302 178 YPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPM 257 (613)
Q Consensus 178 ~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~ 257 (613)
..|.+|+|+||+++...........+.....++++||||++.+.. ....+.++|++||+|||||||++... .+
T Consensus 158 d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~------~~~~~~~~v~~Gk~yRlRiINa~~~~-~~ 230 (552)
T PLN02354 158 EDDYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGD------GKDEPLFTMKPGKTYRYRICNVGLKS-SL 230 (552)
T ss_pred CceEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCC------CCCceEEEECCCCEEEEEEEecCCCc-eE
Confidence 237899999999986543211111111124578999999975321 12247899999999999999999985 89
Q ss_pred EEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCccC---------cCCCCceeEEEEecccCCCC
Q psy4302 258 LFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAH---------MGSRRDRLNILRLRKSLNAL 328 (613)
Q Consensus 258 ~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~~---------~~~~~~~~ail~Y~~~~~~~ 328 (613)
.|+|+||+|+||++||.+++|..++.|.|++|||| ||+|++++++++ ........|||+|.+...+.
T Consensus 231 ~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRy----dVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~ 306 (552)
T PLN02354 231 NFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCF----SVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPA 306 (552)
T ss_pred EEEECCceEEEEEeCCcccCCcceeEEEEccCceE----EEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999 999999987763 13445678999999743211
Q ss_pred CCCCCCCCCCC-ccc---ccC-cCCCCCCccccccCC--------CCceEEEEEEeeeeeccCccccCCcccceeeeecC
Q psy4302 329 DSSDCSDTNPN-VCW---NHV-NSLTPATEKATVLKA--------VPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSS 395 (613)
Q Consensus 329 ~~~~~~~~~~~-~~~---~~l-~~~~~~~~~~~~~~~--------~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (613)
....+..+... ... .++ ..+.+.... +... ..+.++.+...+ . .
T Consensus 307 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~-------------------~--~ 363 (552)
T PLN02354 307 SPELPEAPVGWAWSLNQFRSFRWNLTASAAR--PNPQGSYHYGKINITRTIKLVNSA-------------------S--K 363 (552)
T ss_pred CCCCCCCCcccccchhhhhhhhhcccccccC--CCCCCccccccccccceEEEeccc-------------------c--c
Confidence 11001101000 000 011 011111000 0000 011111111100 0 0
Q ss_pred CCceeeEEecceeccCCCCCcccccCC-CCCCCCCCCC---C--CccCCccccCCccceeeEEEEecCCCEEEEEEEeCC
Q psy4302 396 PNVIKTHVTNNISLGILPFPILSQDLP-IPKEMECPKD---R--SVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWI 469 (613)
Q Consensus 396 ~~~~~~~~iN~~s~~~p~~P~l~~~~~-~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~ 469 (613)
..+...|.+||++|..|..|+|.+.+. +..+.++... . ..| ...+.++.++.++.|++|||+|+|.
T Consensus 364 ~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~-------~~~~~~~~v~~~~~~~~VeiVi~n~- 435 (552)
T PLN02354 364 VDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKI-------TKIKIQPNVLNITFRTFVEIIFENH- 435 (552)
T ss_pred CCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCcccc-------CccccCCeeEEcCCCCEEEEEEeCC-
Confidence 123567999999999999999866431 2223333110 0 011 2234567889999999999999998
Q ss_pred CCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCc
Q psy4302 470 GPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNP 549 (613)
Q Consensus 470 ~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNP 549 (613)
. ...||||||||+||||++|. +.++ +.....+|+.||++|||+.||++||++|||+||||
T Consensus 436 ~---~~~HP~HLHGh~F~Vlg~G~-G~~~----------------~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP 495 (552)
T PLN02354 436 E---KSMQSWHLDGYSFFAVAVEP-GTWT----------------PEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA 495 (552)
T ss_pred C---CCCCCCcCCCccEEEEeecC-CCCC----------------ccccccCCcCCCCccceEEeCCCCeEEEEEEecCC
Confidence 3 45899999999999999987 4443 01123578899999999999999999999999999
Q ss_pred ceeEEeechhhhhhcCceEEEEeccC----CCCCCCCCCCCCCCCCC
Q psy4302 550 GIWIMHCHFIFHTETGMNTVFQVGDR----KDFVQTPPEFPTCNNYL 592 (613)
Q Consensus 550 G~Wl~HCHi~~H~~~GM~~~~~V~~~----~~~~~~p~~~p~C~~~~ 592 (613)
|+|+|||||.+|+..||+++|.|.+. .+++++|++.+.|+..+
T Consensus 496 GvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~ 542 (552)
T PLN02354 496 GMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVK 542 (552)
T ss_pred eEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccccccc
Confidence 99999999999999999999986543 24557999999998543
No 4
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=4.5e-94 Score=798.43 Aligned_cols=493 Identities=25% Similarity=0.414 Sum_probs=366.4
Q ss_pred ceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeE
Q psy4302 20 MVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTI 99 (613)
Q Consensus 20 ~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~ti 99 (613)
++++|+|+|.+.. +++||++|.+|+||||+|||+|++++||+|+|+|+|+|+ ++++|
T Consensus 2 ~~r~y~~~it~~~----------------------~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~-~~tsi 58 (539)
T TIGR03389 2 EVRHYTFDVQEKN----------------------VTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQ-YNVTI 58 (539)
T ss_pred ceEEEEEEEEEEE----------------------eccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCC-CCeeE
Confidence 5789999999743 689999999999999999999999999999999999998 89999
Q ss_pred EeCCCcccCCCCCCCCCccccccCCCCCeEEEEEee-cCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCCC
Q psy4302 100 HWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDY 178 (613)
Q Consensus 100 HwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~-~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d~ 178 (613)
||||++|.+++||||+|++|||||+||++|+|+|++ +++||||||||...|+ +||+|+|||+++.+... +++...
T Consensus 59 HwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~---~~~~~d 134 (539)
T TIGR03389 59 HWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPY---PFPKPD 134 (539)
T ss_pred ecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCC---CCCCCC
Confidence 999999999999999999999999999999999999 4999999999998776 49999999998754221 122112
Q ss_pred CceEEEEeeeccCCCCcccCCCCC-CCCCCCCcceeecCccc--ccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCC
Q psy4302 179 PSHTIIITDWLHGMTDAKFPGNTY-ANFGTRTESFLINGRSV--FKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLAC 255 (613)
Q Consensus 179 ~e~~l~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~lING~~~--~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~ 255 (613)
.|++|+|+||+++.....+..... +.....++++||||+.. +.+. ....+.++|++|++|||||||+|.. +
T Consensus 135 ~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~-----~~~~~~i~v~~G~~~RlRlINa~~~-~ 208 (539)
T TIGR03389 135 REVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCS-----SKDTFKLTVEPGKTYLLRIINAALN-D 208 (539)
T ss_pred ceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCC-----CCCceEEEECCCCEEEEEEEeccCC-c
Confidence 368999999999865443322111 11234668999999964 2221 1234689999999999999999987 4
Q ss_pred cEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCccC---------cC----CCCceeEEEEec
Q psy4302 256 PMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAH---------MG----SRRDRLNILRLR 322 (613)
Q Consensus 256 ~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~~---------~~----~~~~~~ail~Y~ 322 (613)
.+.|+|+||+|+||++||.+++|+.+++|.|++|||| ||+|+++++++. .. ......|||+|.
T Consensus 209 ~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRy----dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~ 284 (539)
T TIGR03389 209 ELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTT----NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYK 284 (539)
T ss_pred eEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEE----EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEEC
Confidence 8999999999999999999999999999999999999 999999987662 11 234579999999
Q ss_pred ccCCCC-CCCCCCCC-CCCccc--c---cCcCCC-C-CCccccccCCCCceEEEEEEeeeeeccCccccCCcccceeeee
Q psy4302 323 KSLNAL-DSSDCSDT-NPNVCW--N---HVNSLT-P-ATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQ 393 (613)
Q Consensus 323 ~~~~~~-~~~~~~~~-~~~~~~--~---~l~~~~-~-~~~~~~~~~~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (613)
+..... ... ...+ ....|. . ++..+. + .+. .....++.++.+.+.+....... + . ..
T Consensus 285 ~~~~~~~p~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~--------~-~-~~ 350 (539)
T TIGR03389 285 GTSNSAKPIL-PTLPAYNDTAAATNFSNKLRSLNSAQYPA---NVPVTIDRRLFFTIGLGLDPCPN--------N-T-CQ 350 (539)
T ss_pred CCCCCCCCCC-CCCCCCCchhhhhHHHhhcccccccCCCC---CCCCCCCeEEEEEeecccccCcc--------c-c-cc
Confidence 743211 111 1111 011111 1 222222 1 111 11234566665555432111000 0 0 00
Q ss_pred cCCCceeeEEecceeccCCCCCcccccCC------------CCCCCCCCCCC---CccCCccccCCccceeeEEEEecCC
Q psy4302 394 SSPNVIKTHVTNNISLGILPFPILSQDLP------------IPKEMECPKDR---SVCGKSAEKGGKLCECVEIIKVGLN 458 (613)
Q Consensus 394 ~~~~~~~~~~iN~~s~~~p~~P~l~~~~~------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~g 458 (613)
...+..+.|.||+++|..|..|+|.+... ..+..+|.... .+| ..+.|++++.++.|
T Consensus 351 ~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~ 422 (539)
T TIGR03389 351 GPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNL--------FTTNGTKVVRLKFN 422 (539)
T ss_pred cCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCccccc--------ccccCceEEEecCC
Confidence 01234568999999999999998855432 11222331110 011 13457889999999
Q ss_pred CEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCc
Q psy4302 459 QVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNG 538 (613)
Q Consensus 459 ~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g 538 (613)
++|||+|+|. ..+....||||||||+||||++|. +.+.. + .....+|+.||++|||+.||++|
T Consensus 423 ~~V~ivi~n~-~~~~~~~HP~HLHGh~F~Vlg~g~-g~~~~------~---------~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 423 STVELVLQDT-SILGSENHPIHLHGYNFFVVGTGF-GNFDP------K---------KDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred CEEEEEEecC-CcCCCCCCcEeEcCCceEEEEecc-CCCCc------c---------cCccccccCCCCeeeeEEcCCCc
Confidence 9999999997 533345899999999999999986 44430 0 01125789999999999999999
Q ss_pred EEEEEEEecCcceeEEeechhhhhhcCceEEEEecc----CCCCCCCCCCCCCC
Q psy4302 539 YTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD----RKDFVQTPPEFPTC 588 (613)
Q Consensus 539 ~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~----~~~~~~~p~~~p~C 588 (613)
|++|||+|||||.|+|||||+||++.||+++|.+.. .++++++|++||+|
T Consensus 486 ~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 486 WAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred eEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999999999999999998743 34699999999999
No 5
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4.2e-94 Score=792.65 Aligned_cols=507 Identities=19% Similarity=0.261 Sum_probs=364.8
Q ss_pred CCCceEEEEEEEeEeeecccccccCCCCCccccccceeecCCC--eEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCC
Q psy4302 17 AKPMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADG--VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD 94 (613)
Q Consensus 17 ~~~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG--~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~ 94 (613)
+...+++|+|+|.+.. +++|| ..+.+++||||+|||+|++++||+|+|+|+|+|+
T Consensus 23 ~~~~~~~y~~~v~~~~----------------------~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~- 79 (596)
T PLN00044 23 AGDPYAYYDWEVSYVS----------------------AAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALD- 79 (596)
T ss_pred cCCceEEEEEEEEEEE----------------------EccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCC-
Confidence 3356789999999853 68898 5678999999999999999999999999999998
Q ss_pred CceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEee-cCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCC
Q psy4302 95 RVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-MPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQ 173 (613)
Q Consensus 95 ~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~-~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~ 173 (613)
++|+|||||++|++++||||+++ |||||+||++|+|+|++ +++||||||||++.|+++||+|+|||++++.. +. +
T Consensus 80 ~~ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~-~~--P 155 (596)
T PLN00044 80 EPLLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVI-PI--P 155 (596)
T ss_pred CCccEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccc-cc--c
Confidence 89999999999999999999988 99999999999999999 48999999999999999999999999987432 11 2
Q ss_pred CCC-CCCceEEEEeeeccCCCCcccCCCCCCCCCCCCcceeecCcccccCCCCC-CCCCccceEEEeCCcEEEEEEEecC
Q psy4302 174 YDT-DYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGT-SNPVPYSKFKVNKGLRHRFRIIGGS 251 (613)
Q Consensus 174 ~d~-d~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~-~~~~~~~~~~v~~G~~~rlRliN~~ 251 (613)
|.. +..|.+|+|+||++............+.....++.+||||++.+...... ......+.++|++||+|||||||++
T Consensus 156 ~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa 235 (596)
T PLN00044 156 FGFPDGGDITLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVG 235 (596)
T ss_pred ccCCcccceEEEecccccCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEcc
Confidence 222 22379999999999875432111111122346789999999875321110 1123446899999999999999999
Q ss_pred CCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCcc-C-----c--------CCCCceeE
Q psy4302 252 CLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA-H-----M--------GSRRDRLN 317 (613)
Q Consensus 252 ~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~-~-----~--------~~~~~~~a 317 (613)
.. +.+.|+|+||+|+||++||.+++|+.++.|.|++|||| ||+|+++++.+ + . .....+.|
T Consensus 236 ~~-~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRy----dVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~A 310 (596)
T PLN00044 236 VA-TSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSY----SFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVA 310 (596)
T ss_pred CC-ceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceE----EEEEECCCCCCCceEEEEecccccCccccCcceeE
Confidence 98 59999999999999999999999999999999999999 99999999854 2 0 13356789
Q ss_pred EEEecccCCCCCCCCCCCC---CCCcccc-cCcCCCCCCccccccCCCC-ceEEEEEEeeeeeccCccccCCcccceeee
Q psy4302 318 ILRLRKSLNALDSSDCSDT---NPNVCWN-HVNSLTPATEKATVLKAVP-DIRLVFAVDEYHFTRDSLFWNDEDEYHRWF 392 (613)
Q Consensus 318 il~Y~~~~~~~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~~~~~p-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 392 (613)
||+|.+.........+..+ .+..... .+.+++...... .....| .......+...... ... . ..
T Consensus 311 Il~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~---~~~-----~--~~ 379 (596)
T PLN00044 311 ILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTAS-GARPNPQGSFHYGDITVTDVY---LLQ-----S--MA 379 (596)
T ss_pred EEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCC-cCCCCCcccceeeEEeeeeee---eec-----c--cc
Confidence 9999874321110001111 0111110 111222100000 000111 11111122211000 000 0 00
Q ss_pred ecCCCceeeEEecceeccCCCCCcccc-cCCCCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCC
Q psy4302 393 QSSPNVIKTHVTNNISLGILPFPILSQ-DLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGP 471 (613)
Q Consensus 393 ~~~~~~~~~~~iN~~s~~~p~~P~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~ 471 (613)
.....+...|.|||+||..|..|+|.. ++.+. +.|.... ....+. ...-..+.++.++.|++|||+|+|. .
T Consensus 380 ~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~-gv~~~~f-p~~pp~----~~~~~~t~v~~~~~n~~VeiV~qn~-~- 451 (596)
T PLN00044 380 PELIDGKLRATLNEISYIAPSTPLMLAQIFNVP-GVFKLDF-PNHPMN----RLPKLDTSIINGTYKGFMEIIFQNN-A- 451 (596)
T ss_pred ccccCCeEEEEECcccCCCCCCcchhhhhccCC-CcccCCC-CCCCCc----cccccCceEEEcCCCCEEEEEEeCC-C-
Confidence 000123678999999999999998843 33222 2221110 000000 0111256788999999999999997 3
Q ss_pred CCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCcce
Q psy4302 472 TSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGI 551 (613)
Q Consensus 472 ~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNPG~ 551 (613)
...||||||||+||||++|. |.++ +.+...+|+.||++||||.||++||++|||+|||||.
T Consensus 452 --~~~HP~HLHGh~F~Vvg~G~-G~~~----------------~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~ 512 (596)
T PLN00044 452 --TNVQSYHLDGYAFFVVGMDY-GLWT----------------DNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGI 512 (596)
T ss_pred --CCCCCeeEcCccEEEEeecC-CCCC----------------CCcccccccCCCCccceEEeCCCCeEEEEEecCCCEE
Confidence 35899999999999999997 6654 1123368999999999999999999999999999999
Q ss_pred eEEeechhhhhhcCceEEEEecc-----CCCCCCCCCCCCCCCCCCC
Q psy4302 552 WIMHCHFIFHTETGMNTVFQVGD-----RKDFVQTPPEFPTCNNYLP 593 (613)
Q Consensus 552 Wl~HCHi~~H~~~GM~~~~~V~~-----~~~~~~~p~~~p~C~~~~~ 593 (613)
|+|||||+.|+..||+++|.|.+ .++++++|+++++||.-+.
T Consensus 513 W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 513 WNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSS 559 (596)
T ss_pred ehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCccccccc
Confidence 99999999999999999997653 3468899999999985533
No 6
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.1e-93 Score=795.53 Aligned_cols=503 Identities=25% Similarity=0.389 Sum_probs=366.3
Q ss_pred CceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCcee
Q psy4302 19 PMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVT 98 (613)
Q Consensus 19 ~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~t 98 (613)
.+.++|+|+|++. .+++||++|.+++||||+|||+|++++||+|+|+|+|+|+.++++
T Consensus 21 ~~~~~~~~~vt~~----------------------~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~ts 78 (574)
T PLN02191 21 AAVREYTWEVEYK----------------------YWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLV 78 (574)
T ss_pred cceEEEEEEEEEE----------------------EeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCcc
Confidence 4678899999874 368999999999999999999999999999999999999867899
Q ss_pred EEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCCC
Q psy4302 99 IHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDY 178 (613)
Q Consensus 99 iHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d~ 178 (613)
|||||++|++++||||+|++|||||+||++|+|+|+++++||||||||++.|+++||+|+|||+++.+ +.. .+.+|.
T Consensus 79 iHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~--~~~-~~~~d~ 155 (574)
T PLN02191 79 IHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKG--PKE-RLRYDG 155 (574)
T ss_pred EECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCC--CCC-CCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999987632 211 233443
Q ss_pred CceEEEEeeeccCCCCcccCCCC--CCCCCCCCcceeecCcccccCCCCC------C---------CCCccceEEEeCCc
Q psy4302 179 PSHTIIITDWLHGMTDAKFPGNT--YANFGTRTESFLINGRSVFKSGNGT------S---------NPVPYSKFKVNKGL 241 (613)
Q Consensus 179 ~e~~l~l~d~~~~~~~~~~~~~~--~~~~~~~~~~~lING~~~~~~~~~~------~---------~~~~~~~~~v~~G~ 241 (613)
|++|+|+||++........... .......++++||||++.+.+.... . .......++|++||
T Consensus 156 -e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~ 234 (574)
T PLN02191 156 -EFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNK 234 (574)
T ss_pred -eEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCC
Confidence 6899999999976432211111 0011245789999999987553110 0 01122369999999
Q ss_pred EEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCcc-C----------cC
Q psy4302 242 RHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA-H----------MG 310 (613)
Q Consensus 242 ~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~-~----------~~ 310 (613)
+|||||||+++.. .+.|+|+||+|+|||+||.+++|+.+++|.|++|||| ||+|++++..+ + ..
T Consensus 235 ~yRlRiINa~~~~-~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRy----dVlV~a~~~~~~~y~ira~~~~~~~ 309 (574)
T PLN02191 235 TYRIRLASTTALA-SLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESY----SVLLTTDQDPSQNYYISVGVRGRKP 309 (574)
T ss_pred EEEEEEEecCCce-eEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeE----EEEEECCCCCCCCEEEEEEccccCC
Confidence 9999999999885 9999999999999999999999999999999999999 99999999753 2 11
Q ss_pred CCCceeEEEEecccCCC--CCCCCCCCC-CCCcccccCcCCCCCCcc--ccccCCCCceEEEEEEeeeeeccCccccCCc
Q psy4302 311 SRRDRLNILRLRKSLNA--LDSSDCSDT-NPNVCWNHVNSLTPATEK--ATVLKAVPDIRLVFAVDEYHFTRDSLFWNDE 385 (613)
Q Consensus 311 ~~~~~~ail~Y~~~~~~--~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~pd~~~~l~~~~~~~~~~~~~~~~~ 385 (613)
......|||+|.+.... +.......+ ....+............. ........+..+.+.+.. .
T Consensus 310 ~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~----- 377 (574)
T PLN02191 310 NTTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN-------L----- 377 (574)
T ss_pred CCCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc-------e-----
Confidence 12345799999863221 111100000 000111111111111100 000001112222211100 0
Q ss_pred ccceeeeecCCCceeeEEecceeccCCCCCcccccCCCCCCCC---------CCCCCCccCCccccCCccceeeEEEEec
Q psy4302 386 DEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEME---------CPKDRSVCGKSAEKGGKLCECVEIIKVG 456 (613)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 456 (613)
..+...|.+|+++|..|..|+|.+.....+..| ....+ .|.+.. -...+.+++++.++
T Consensus 378 ----------~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~v~~~~ 444 (574)
T PLN02191 378 ----------IDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYD-IMNPPP--FPNTTTGNGIYVFP 444 (574)
T ss_pred ----------eCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCccccccccc-ccCCCc--cccccccceeEEec
Confidence 112457999999999899998776532111111 10000 010000 01235678899999
Q ss_pred CCCEEEEEEEeCCCCC---CCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEE
Q psy4302 457 LNQVAEIIFIDWIGPT---STFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVT 533 (613)
Q Consensus 457 ~g~~ve~vl~N~~~~~---~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~ 533 (613)
.|++|||+|+|. ... ....||||||||+||||++|. +.++. +. ....+|+.||++|||+.
T Consensus 445 ~~~~Vdivi~n~-~~~~~~~~~~HP~HLHGh~F~Vlg~G~-g~~~~------~~---------~~~~~nl~nP~rRDTv~ 507 (574)
T PLN02191 445 FNVTVDVIIQNA-NVLKGVVSEIHPWHLHGHDFWVLGYGD-GKFKP------GI---------DEKTYNLKNPPLRNTAI 507 (574)
T ss_pred CCCEEEEEEECC-CcccCCCCCCCCEEeCCCCeEEEEecC-CCCCc------cc---------CcccccCCCCCcCCeEE
Confidence 999999999997 311 257899999999999999987 54430 11 11257899999999999
Q ss_pred cCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEeccCCCCCCCCCCCCCCCCCCCCC
Q psy4302 534 IPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPTCNNYLPPV 595 (613)
Q Consensus 534 Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~p~~~p~C~~~~~~~ 595 (613)
||++||++|||++||||.|+|||||+||+..||+++|..+ +++++++|++++.|+.|+...
T Consensus 508 vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~-~~~~~~~p~~~~~C~~~~~~~ 568 (574)
T PLN02191 508 LYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEG-LNRIGKIPDEALGCGLTKQFL 568 (574)
T ss_pred eCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecC-hhhccCCCcchhhhhcccccc
Confidence 9999999999999999999999999999999999999765 567888999999999886554
No 7
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.3e-93 Score=794.16 Aligned_cols=493 Identities=26% Similarity=0.420 Sum_probs=367.1
Q ss_pred eEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEE
Q psy4302 21 VCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIH 100 (613)
Q Consensus 21 ~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiH 100 (613)
+++|+|+|.+.. +++||++|.+++|||++|||+|++++||+|+|+|+|+|..++++||
T Consensus 1 ~~~y~~~vt~~~----------------------~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iH 58 (541)
T TIGR03388 1 IRHYKWEVEYEF----------------------WSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIH 58 (541)
T ss_pred CEEEEEEEEEEE----------------------ecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEE
Confidence 368999999753 6899999999999999999999999999999999999975789999
Q ss_pred eCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCCCCc
Q psy4302 101 WHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPS 180 (613)
Q Consensus 101 wHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d~~e 180 (613)
|||++|.+++||||++++|||+|+||++|+|+|+++++||||||||.+.|+++||+|+|||+++.+.. .++++|. |
T Consensus 59 wHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~p~~~d~-e 134 (541)
T TIGR03388 59 WHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEK---EPFHYDG-E 134 (541)
T ss_pred ecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCC---CCccccc-e
Confidence 99999999999999999999999999999999999999999999999999999999999999874322 1234553 7
Q ss_pred eEEEEeeeccCCCCcccCCCCC-C-CCCCCCcceeecCcccccCCCCC--------------CCCCccceEEEeCCcEEE
Q psy4302 181 HTIIITDWLHGMTDAKFPGNTY-A-NFGTRTESFLINGRSVFKSGNGT--------------SNPVPYSKFKVNKGLRHR 244 (613)
Q Consensus 181 ~~l~l~d~~~~~~~~~~~~~~~-~-~~~~~~~~~lING~~~~~~~~~~--------------~~~~~~~~~~v~~G~~~r 244 (613)
++|+|+||+++...+....... . .....++++||||++++.+.... ........++|++|++||
T Consensus 135 ~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~R 214 (541)
T TIGR03388 135 FNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYR 214 (541)
T ss_pred EEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEE
Confidence 9999999999865432221111 0 11135789999999987543210 011223468999999999
Q ss_pred EEEEecCCCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCcc-C-------c---CCCC
Q psy4302 245 FRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA-H-------M---GSRR 313 (613)
Q Consensus 245 lRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~-~-------~---~~~~ 313 (613)
|||||++.. +.+.|+|+||+|+|||+||.+++|+.++.|.|++|||| ||+|++++.++ + . ....
T Consensus 215 lRliNa~~~-~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~----dvlv~~~~~~~~~y~ira~~~~~~~~~~ 289 (541)
T TIGR03388 215 LRIASTTAL-AALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETY----SVLLTTDQDPSRNYWISVGVRGRKPNTP 289 (541)
T ss_pred EEEEccccc-ceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEE----EEEEeCCCCCCCcEEEEEecccCCCCCc
Confidence 999999987 49999999999999999999999999999999999999 99999998653 2 1 2234
Q ss_pred ceeEEEEecccCCC--CCCCCCCCCC-CCccc---ccCcCCCCCCccccccCCCCceEEEEEEeeeeeccCccccCCccc
Q psy4302 314 DRLNILRLRKSLNA--LDSSDCSDTN-PNVCW---NHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDE 387 (613)
Q Consensus 314 ~~~ail~Y~~~~~~--~~~~~~~~~~-~~~~~---~~l~~~~~~~~~~~~~~~~pd~~~~l~~~~~~~~~~~~~~~~~~~ 387 (613)
.+.|||+|.+.... +.......+. ...+. ..+..+...... .....++.++++.....
T Consensus 290 ~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------- 353 (541)
T TIGR03388 290 PGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSP--KPPETSDRRIVLLNTQN-------------- 353 (541)
T ss_pred cEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCC--CCCCCCCcEEEEeccCc--------------
Confidence 57899999863221 1110010110 00000 011111100000 11123455444321100
Q ss_pred ceeeeecCCCceeeEEecceeccCCCCCcccccCCCC---------CCCCCCCCC-CccCCccccCCccceeeEEEEecC
Q psy4302 388 YHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIP---------KEMECPKDR-SVCGKSAEKGGKLCECVEIIKVGL 457 (613)
Q Consensus 388 ~~~~~~~~~~~~~~~~iN~~s~~~p~~P~l~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 457 (613)
..++...|.+|+++|..|..|+|.+..... +..+....+ ..|.. ....|.|+.++.++.
T Consensus 354 -------~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 422 (541)
T TIGR03388 354 -------KINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPP----NPNTTTGNGIYRLKF 422 (541)
T ss_pred -------ccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCc----ccccccCceEEEecC
Confidence 012345799999999989999886653211 111100000 11110 023466889999999
Q ss_pred CCEEEEEEEeCCCCC---CCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEc
Q psy4302 458 NQVAEIIFIDWIGPT---STFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTI 534 (613)
Q Consensus 458 g~~ve~vl~N~~~~~---~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~V 534 (613)
|++|||+|+|. ..+ ....||||||||+||||++|. +.++. +. ....+|+.||++|||+.|
T Consensus 423 g~~Vdivi~n~-~~~~~~~~~~HP~HLHGh~F~vlg~g~-g~~~~------~~---------~~~~~n~~nP~~RDTv~v 485 (541)
T TIGR03388 423 NTTVDVILQNA-NTLNGNNSETHPWHLHGHDFWVLGYGE-GKFRP------GV---------DEKSYNLKNPPLRNTVVI 485 (541)
T ss_pred CCeEEEEEECC-ccccCCCCCCCcEEecCCceEEEeecc-CCCCc------cc---------CcccccCCCCCEeceEEe
Confidence 99999999997 421 246899999999999999987 44430 10 122578999999999999
Q ss_pred CCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEeccCCCCCCCCCCCCCCC
Q psy4302 535 PPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPTCN 589 (613)
Q Consensus 535 p~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~p~~~p~C~ 589 (613)
|++||++|||+|||||.|+|||||+||++.||+++|.++ +++++++|+++++||
T Consensus 486 p~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~~~~~~P~~~~~C~ 539 (541)
T TIGR03388 486 FPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VEKVGKLPKEALGCG 539 (541)
T ss_pred CCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-ccccCCCCccccCCC
Confidence 999999999999999999999999999999999999887 578999999999997
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.8e-93 Score=785.06 Aligned_cols=483 Identities=19% Similarity=0.272 Sum_probs=352.5
Q ss_pred CceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCcee
Q psy4302 19 PMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVT 98 (613)
Q Consensus 19 ~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~t 98 (613)
..+++|+|+|++.. +++||++|.+++||||+|||+|++++||+|+|+|+|+|+ ++|+
T Consensus 24 a~~~~~~~~vt~~~----------------------~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~-~~tt 80 (545)
T PLN02168 24 APIVSYQWVVSYSQ----------------------RFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLT-EPFL 80 (545)
T ss_pred ccEEEEEEEEEEEE----------------------ecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCC-CCcc
Confidence 46899999999853 689999999999999999999999999999999999998 8999
Q ss_pred EEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeec-CCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCC
Q psy4302 99 IHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177 (613)
Q Consensus 99 iHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~-~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d 177 (613)
|||||++|.+++||||+|+ |||||+||++|+|+|++. ++||||||||.+.|+++||+|+|||++++........++.
T Consensus 81 iHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~- 158 (545)
T PLN02168 81 MTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDE- 158 (545)
T ss_pred EeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccc-
Confidence 9999999999999999999 999999999999999995 8999999999999999999999999987543222122333
Q ss_pred CCceEEEEeeeccCCCCcccCCCCCCCCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcE
Q psy4302 178 YPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPM 257 (613)
Q Consensus 178 ~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~ 257 (613)
|++|+|+||++............+.....++.+||||++.+ .+.++|++|++|||||||++... .+
T Consensus 159 --e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~-----------~~~~~v~~G~~yRlRiiNa~~~~-~~ 224 (545)
T PLN02168 159 --EYDILIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRGPE-----------ETFFAFEPGKTYRLRISNVGLKT-CL 224 (545)
T ss_pred --eeeEEEEecCCCCHHHHHhhhhcCCCCCCCCEEEEeccCCC-----------cceEEeCCCCEEEEEEEeccCCc-eE
Confidence 68899999999764332111111122346889999999751 26899999999999999999885 89
Q ss_pred EEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCc----cC---------cCCCCceeEEEEeccc
Q psy4302 258 LFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDA----AH---------MGSRRDRLNILRLRKS 324 (613)
Q Consensus 258 ~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~----~~---------~~~~~~~~ail~Y~~~ 324 (613)
.|+|+||+|+||++||.+++|..+++|.|++|||| ||+|+++++. +. ........|||+|++.
T Consensus 225 ~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRy----dvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~ 300 (545)
T PLN02168 225 NFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSY----SVLVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNS 300 (545)
T ss_pred EEEECCcEEEEEEECCeECCCceeeEEEEcCCceE----EEEEEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCC
Confidence 99999999999999999999999999999999999 9999998653 22 1345677899999874
Q ss_pred CCCCCCCCCCCCC--CCccccc----Cc-CCCCCCccccccCCCCceEE---EEEEeeee-eccCccccCCcccceeeee
Q psy4302 325 LNALDSSDCSDTN--PNVCWNH----VN-SLTPATEKATVLKAVPDIRL---VFAVDEYH-FTRDSLFWNDEDEYHRWFQ 393 (613)
Q Consensus 325 ~~~~~~~~~~~~~--~~~~~~~----l~-~~~~~~~~~~~~~~~pd~~~---~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 393 (613)
........+..+. ...+..+ +. .+.|... ...|...+ ....+... .... .
T Consensus 301 ~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~-----~~~p~~~~~~~~~~~~~~~~~~~~------------~-- 361 (545)
T PLN02168 301 PLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAA-----RSNPQGSYHYGRINVTRTIILHND------------V-- 361 (545)
T ss_pred CCCCCCCCCCCCcccccccccchhhhhhhcCCCCCC-----CCCCcccccccccccceeEEeccc------------c--
Confidence 2211111011010 1011101 11 1221000 11111100 00000000 0000 0
Q ss_pred cCCCceeeEEecceeccCCCCCcccccC-CCCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCCC
Q psy4302 394 SSPNVIKTHVTNNISLGILPFPILSQDL-PIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPT 472 (613)
Q Consensus 394 ~~~~~~~~~~iN~~s~~~p~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~~ 472 (613)
...++...|.+||++|..|..|+|.... .+. +.+-.+.-....++ ...-..+.++.++.|++|||+|+|. .
T Consensus 362 ~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~-~~~~~~~~~~~p~~----~~~~~~~~v~~~~~~~~VeiViqn~-~-- 433 (545)
T PLN02168 362 MLSSGKLRYTINGVSFVYPGTPLKLVDHFQLN-DTIIPGMFPVYPSN----KTPTLGTSVVDIHYKDFYHIVFQNP-L-- 433 (545)
T ss_pred cccCceEEEEECCCccCCCCCchhhhhhcccc-cccccCCCccCCCc----CccccCceEEEecCCCEEEEEEeCC-C--
Confidence 0012356899999999999999874331 111 01100000000000 0011246788999999999999998 3
Q ss_pred CCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCccee
Q psy4302 473 STFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIW 552 (613)
Q Consensus 473 ~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNPG~W 552 (613)
...||||||||+||||++|. +.++ +.+...+|+.||++|||+.||++||++|||+|||||.|
T Consensus 434 -~~~HP~HLHGh~F~Vvg~g~-g~~~----------------~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W 495 (545)
T PLN02168 434 -FSLESYHIDGYNFFVVGYGF-GAWS----------------ESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMW 495 (545)
T ss_pred -CCCCCeeeCCCceEEEECCC-CCCC----------------ccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEE
Confidence 45899999999999999987 5543 11223579999999999999999999999999999999
Q ss_pred EEeechhhhhhcCceEEEEec----------cCCCCCCCCCCCCCCC
Q psy4302 553 IMHCHFIFHTETGMNTVFQVG----------DRKDFVQTPPEFPTCN 589 (613)
Q Consensus 553 l~HCHi~~H~~~GM~~~~~V~----------~~~~~~~~p~~~p~C~ 589 (613)
+|||||++|+..||++.|+|. ..++++++|+++++||
T Consensus 496 l~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg 542 (545)
T PLN02168 496 NVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCG 542 (545)
T ss_pred eeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhcccc
Confidence 999999888888888888762 1245778999999998
No 9
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.3e-93 Score=783.85 Aligned_cols=485 Identities=20% Similarity=0.280 Sum_probs=356.5
Q ss_pred eEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEE
Q psy4302 21 VCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIH 100 (613)
Q Consensus 21 ~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiH 100 (613)
+.+|+|+|.+.. +++||++|.+++||||+|||+|++++||+|+|+|+|+|+ ++++||
T Consensus 16 ~~~~~~~vt~~~----------------------~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~-~~ttiH 72 (536)
T PLN02792 16 TLFYNWRVTYGN----------------------ISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLD-EPFLLS 72 (536)
T ss_pred eEEEEEEEEEEE----------------------eCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCC-CCcCEe
Confidence 358999998753 678999999999999999999999999999999999998 899999
Q ss_pred eCCCcccCCCCCCCCCccccccCCCCCeEEEEEeec-CCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCCCC
Q psy4302 101 WHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYP 179 (613)
Q Consensus 101 wHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~-~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d~~ 179 (613)
|||++|++++||||+++ |||||+||++|+|+|++. ++||||||||.+.|+++||+|+|||++++.. +. +|+....
T Consensus 73 WHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~-~~--p~~~~d~ 148 (536)
T PLN02792 73 WNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRI-PV--PFPEPAG 148 (536)
T ss_pred CCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCccc-Cc--CCCcccc
Confidence 99999999999999987 999999999999999994 8999999999999999999999999875332 21 1221122
Q ss_pred ceEEEEeeeccCCCCcccCCCCC-CC-CCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcE
Q psy4302 180 SHTIIITDWLHGMTDAKFPGNTY-AN-FGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPM 257 (613)
Q Consensus 180 e~~l~l~d~~~~~~~~~~~~~~~-~~-~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~ 257 (613)
|.+|+|+||++....... .... +. .+..++.+||||++.+ ..+.++|++||+|||||||++... .+
T Consensus 149 e~~i~l~Dw~~~~~~~~~-~~~~~g~~~~~~~d~~liNG~~~~----------~~~~~~v~~Gk~yRlRliNa~~~~-~~ 216 (536)
T PLN02792 149 DFTFLIGDWYRRNHTTLK-KILDGGRKLPLMPDGVMINGQGVS----------YVYSITVDKGKTYRFRISNVGLQT-SL 216 (536)
T ss_pred eeEEEecccccCCHHHHH-HHhhccCcCCCCCCEEEEeccCCC----------CcceEEECCCCEEEEEEEEcCCCc-eE
Confidence 689999999998654321 1111 11 1237899999999862 126899999999999999999984 89
Q ss_pred EEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCccC---------cCCCCceeEEEEecccCCCC
Q psy4302 258 LFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAH---------MGSRRDRLNILRLRKSLNAL 328 (613)
Q Consensus 258 ~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~~---------~~~~~~~~ail~Y~~~~~~~ 328 (613)
.|+|+||+|+||++||.+++|..+++|.|+||||| ||+|+++++++. ........|||+|.+.....
T Consensus 217 ~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRy----dVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~ 292 (536)
T PLN02792 217 NFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTY----SVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHK 292 (536)
T ss_pred EEEECCcEEEEEEeCCccCCCcceeEEEEccCceE----EEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999 999999998763 12345778999999743321
Q ss_pred CCCCCCCC--CC-Cccc---ccCcC-CCC-CCccccccCCCCceEEEEEEeeee-eccCccccCCcccceeeeecCCCce
Q psy4302 329 DSSDCSDT--NP-NVCW---NHVNS-LTP-ATEKATVLKAVPDIRLVFAVDEYH-FTRDSLFWNDEDEYHRWFQSSPNVI 399 (613)
Q Consensus 329 ~~~~~~~~--~~-~~~~---~~l~~-~~~-~~~~~~~~~~~pd~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (613)
... +..+ .. .... ..++. +.+ .+. ..+...+....+.++... .... .. ..++.
T Consensus 293 ~~~-p~~p~~~~~~~~~~~~~~~~~~l~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~ 354 (536)
T PLN02792 293 IIH-ARQPDPDDLEWSIKQAQSIRTNLTASGPR---TNPQGSYHYGKMKISRTLILESS------------AA--LVKRK 354 (536)
T ss_pred CCC-CCCCCcCCccccccchhhhhhccCCCCCC---CCCCcccccceeccceeEEeccc------------cc--ccCce
Confidence 111 1111 00 0000 00011 110 000 000000000011111100 0000 00 01235
Q ss_pred eeEEecceeccCCCCCcccccCC-CCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCCCCCCCCC
Q psy4302 400 KTHVTNNISLGILPFPILSQDLP-IPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHP 478 (613)
Q Consensus 400 ~~~~iN~~s~~~p~~P~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HP 478 (613)
..|.||++||..|..|+|...+. +. +.+..+.-....+.. ......+.++.++.|++|||+|+|. . ...||
T Consensus 355 ~~~~iN~~s~~~p~~p~L~a~~~~~~-g~~~~~~~~~~p~~~---~~~~~~~~v~~~~~~~~VeiViqn~-~---~~~HP 426 (536)
T PLN02792 355 QRYAINGVSFVPSDTPLKLADHFKIK-GVFKVGSIPDKPRRG---GGMRLDTSVMGAHHNAFLEIIFQNR-E---KIVQS 426 (536)
T ss_pred eEEEECCcccCCCCCchhhhhhhccC-CCcCcccCccCCccc---CCCccCceEEEcCCCCEEEEEEECC-C---CCCCC
Confidence 67899999999999999865331 22 222110000000000 0112356788999999999999997 3 45899
Q ss_pred eeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCcceeEEeech
Q psy4302 479 MHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHF 558 (613)
Q Consensus 479 fHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi 558 (613)
||||||+||||++|. +.++ +.+...+|+.+|++||||.||++||++|||+|||||.|+||||+
T Consensus 427 ~HLHGh~F~Vvg~G~-G~~~----------------~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~ 489 (536)
T PLN02792 427 YHLDGYNFWVVGINK-GIWS----------------RASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQF 489 (536)
T ss_pred eeeCCCceEEEeecC-CCCC----------------cccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcc
Confidence 999999999999987 5553 11233579999999999999999999999999999999999999
Q ss_pred hhhhhcCceEEEEeccC----CCCCCCCCCCCCCCCC
Q psy4302 559 IFHTETGMNTVFQVGDR----KDFVQTPPEFPTCNNY 591 (613)
Q Consensus 559 ~~H~~~GM~~~~~V~~~----~~~~~~p~~~p~C~~~ 591 (613)
.+|+..||+++|.|.+. ++++++|+++++||.-
T Consensus 490 ~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~ 526 (536)
T PLN02792 490 WARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRA 526 (536)
T ss_pred hhccccceEEEEEEccCCCccccccCCCcccCccccc
Confidence 99999999999987643 4688999999999843
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=9.2e-93 Score=789.69 Aligned_cols=503 Identities=25% Similarity=0.420 Sum_probs=375.0
Q ss_pred CCceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCce
Q psy4302 18 KPMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV 97 (613)
Q Consensus 18 ~~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~ 97 (613)
.+++++|+|+|.+.. +++||++|.+|+|||++|||+|++++||+|+|+|+|+|..+++
T Consensus 21 ~~~~~~y~~~vt~~~----------------------~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~ 78 (566)
T PLN02604 21 EARIRRYKWEVKYEY----------------------KSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENV 78 (566)
T ss_pred cCcEEEEEEEEEEEE----------------------ECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCC
Confidence 468899999999753 6899999999999999999999999999999999999865799
Q ss_pred eEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCC
Q psy4302 98 TIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177 (613)
Q Consensus 98 tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d 177 (613)
+|||||+++.+++||||++++|||+|+||++++|+|+++++||||||||.+.|+.+||+|+|||+++.+.. . ++++|
T Consensus 79 ~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~-~--p~~~d 155 (566)
T PLN02604 79 AIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKS-E--PFSYD 155 (566)
T ss_pred CEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCC-C--ccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874321 1 23444
Q ss_pred CCceEEEEeeeccCCCCcccCCCCC--CCCCCCCcceeecCcccccCCCC----------CCC--CCccceEEEeCCcEE
Q psy4302 178 YPSHTIIITDWLHGMTDAKFPGNTY--ANFGTRTESFLINGRSVFKSGNG----------TSN--PVPYSKFKVNKGLRH 243 (613)
Q Consensus 178 ~~e~~l~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~lING~~~~~~~~~----------~~~--~~~~~~~~v~~G~~~ 243 (613)
. |.+|+|+||+++...+.+..... ......++++||||++.+.+... ... ....+.++|++|++|
T Consensus 156 ~-d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 234 (566)
T PLN02604 156 Y-DRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTY 234 (566)
T ss_pred c-ceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEE
Confidence 3 58999999999876443222111 01123679999999998765311 011 124458999999999
Q ss_pred EEEEEecCCCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCcc-C----------cCCC
Q psy4302 244 RFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA-H----------MGSR 312 (613)
Q Consensus 244 rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~-~----------~~~~ 312 (613)
||||||++.. +.+.|+|+||+|+|||+||.+++|+.++.|.|++|||| ||+|++++.++ . ....
T Consensus 235 RlRlINa~~~-~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRy----dvlV~~~~~~~~~y~ira~~~~~~~~~ 309 (566)
T PLN02604 235 RLRISSLTAL-SALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETY----SVLVKADQDPSRNYWVTTSVVSRNNTT 309 (566)
T ss_pred EEEEEecccc-ceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeE----EEEEECCCCCCCCEEEEEecccCCCCC
Confidence 9999999988 59999999999999999999999999999999999999 99999998754 2 1134
Q ss_pred CceeEEEEecccCCC---CCCCCCCCC--CC-CcccccCcCCCCCCccccccCCCCceEEEEEEeeeeeccCccccCCcc
Q psy4302 313 RDRLNILRLRKSLNA---LDSSDCSDT--NP-NVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDED 386 (613)
Q Consensus 313 ~~~~ail~Y~~~~~~---~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~~~~~pd~~~~l~~~~~~~~~~~~~~~~~~ 386 (613)
..+.|||+|.+.... +... ...+ .. ..+.+....+.............++.++.+.... .
T Consensus 310 ~~~~aIL~Y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~------- 375 (566)
T PLN02604 310 PPGLAIFNYYPNHPRRSPPTVP-PSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQ------N------- 375 (566)
T ss_pred cceeEEEEECCCCCCCCCCCCC-CCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccc------c-------
Confidence 677999999963211 1111 0000 00 0011111111100000001112234443321111 0
Q ss_pred cceeeeecCCCceeeEEecceeccCCCCCcccccCCCCCCCCCCCCC-CccC-----Ccc-ccCCccceeeEEEEecCCC
Q psy4302 387 EYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDR-SVCG-----KSA-EKGGKLCECVEIIKVGLNQ 459 (613)
Q Consensus 387 ~~~~~~~~~~~~~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~-~~~~-----~~~-~~~~~~~~~~~~~~v~~g~ 459 (613)
..++...|.||+++|..|..|+|.+.+......||.... ..+. ... ......+.|..++.++.|+
T Consensus 376 --------~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 447 (566)
T PLN02604 376 --------EVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNS 447 (566)
T ss_pred --------ccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCC
Confidence 012346899999999989999887765544455553211 0010 000 0001234578889999999
Q ss_pred EEEEEEEeCCCCC---CCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCC
Q psy4302 460 VAEIIFIDWIGPT---STFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536 (613)
Q Consensus 460 ~ve~vl~N~~~~~---~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~ 536 (613)
+||++|+|. ..+ ....||||||||+||||++|. +.++. + .....+|+.+|++|||+.||+
T Consensus 448 ~Vdivi~n~-~~~~~~~~~~HP~HLHGH~F~Vlg~G~-G~~~~------~---------~~~~~~nl~nP~rRDTv~vp~ 510 (566)
T PLN02604 448 TVDIILQNA-NTMNANNSETHPWHLHGHDFWVLGYGE-GKFNM------S---------SDPKKYNLVDPIMKNTVPVHP 510 (566)
T ss_pred eEEEEEECC-ccccCCCCCCCCEEecCCceEEEEecC-CCCCc------c---------ccccccCCCCCCccceEEeCC
Confidence 999999998 421 356899999999999999987 44430 1 012357899999999999999
Q ss_pred CcEEEEEEEecCcceeEEeechhhhhhcCceEEEEeccCCCCCCCCCCCCCCCCC
Q psy4302 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPTCNNY 591 (613)
Q Consensus 537 ~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~p~~~p~C~~~ 591 (613)
+||++|||+|||||.|+|||||+||+..||+++|.++ +++++++|..+++|++-
T Consensus 511 ~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~~~~~~p~~~~~C~~~ 564 (566)
T PLN02604 511 YGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IERVGKLPSSIMGCGES 564 (566)
T ss_pred CceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hhhccCCCCCcCccccC
Confidence 9999999999999999999999999999999999887 56899999999999853
No 11
>KOG1263|consensus
Probab=100.00 E-value=1.1e-89 Score=749.26 Aligned_cols=502 Identities=26% Similarity=0.409 Sum_probs=380.5
Q ss_pred CCCceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCc
Q psy4302 17 AKPMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRV 96 (613)
Q Consensus 17 ~~~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~ 96 (613)
+..++|.|.|++++. ++.++|.++.+++|||++|||+|+|++||+|+|+|+|++. ++
T Consensus 24 a~~~~~~~~~~v~~~----------------------~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~ 80 (563)
T KOG1263|consen 24 AEAPIRFHTWKVTYG----------------------TASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLD-EP 80 (563)
T ss_pred hcCceEEEEeeEEee----------------------eeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-Cc
Confidence 347899999999984 3677888999999999999999999999999999999997 99
Q ss_pred eeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeec-CCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCC
Q psy4302 97 VTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYD 175 (613)
Q Consensus 97 ~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~-~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d 175 (613)
++|||||++|+.++|+|| +++|||||+||++|+|+|+++ +.||||||+|+++|+++|++|+|||+++.... -+++
T Consensus 81 ~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p---~pf~ 156 (563)
T KOG1263|consen 81 FSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLP---VPFP 156 (563)
T ss_pred eEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCC---CCCC
Confidence 999999999999999999 999999999999999999998 89999999999999999999999999875432 2344
Q ss_pred CCCCceEEEEeeeccC-CCCcccCCCCCCCC-CCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCC
Q psy4302 176 TDYPSHTIIITDWLHG-MTDAKFPGNTYANF-GTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCL 253 (613)
Q Consensus 176 ~d~~e~~l~l~d~~~~-~~~~~~~~~~~~~~-~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~ 253 (613)
....|++|+++||+++ .............. +..+|..+|||+..+.... .+.++|++||+|||||+|+|..
T Consensus 157 ~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~-------~~~l~v~pGktY~lRiiN~g~~ 229 (563)
T KOG1263|consen 157 KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC-------TPTLTVEPGKTYRLRIINAGLN 229 (563)
T ss_pred CCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc-------eeEEEEcCCCEEEEEEEccccc
Confidence 4445899999999996 43332222112222 2338999999998632211 4899999999999999999988
Q ss_pred CCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCccC---------cCC----CCceeEEEE
Q psy4302 254 ACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAH---------MGS----RRDRLNILR 320 (613)
Q Consensus 254 ~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~~---------~~~----~~~~~ail~ 320 (613)
. .+.|+|++|+|+||++||.+++|..+++|.|+||||+ ||+|+|++..++ ... .....|+|+
T Consensus 230 ~-~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~----~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~ 304 (563)
T KOG1263|consen 230 T-SLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTY----SVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILR 304 (563)
T ss_pred c-ceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEE----EEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEE
Confidence 6 7889999999999999999999999999999999999 999999999873 112 677889999
Q ss_pred ecccCCCCCCCCCC----CC---CCCccccc---CcCCCCCCccccccCCCCceE--EEEEEeeeeeccCccccCCcccc
Q psy4302 321 LRKSLNALDSSDCS----DT---NPNVCWNH---VNSLTPATEKATVLKAVPDIR--LVFAVDEYHFTRDSLFWNDEDEY 388 (613)
Q Consensus 321 Y~~~~~~~~~~~~~----~~---~~~~~~~~---l~~~~~~~~~~~~~~~~pd~~--~~l~~~~~~~~~~~~~~~~~~~~ 388 (613)
|.+...+.... +. .+ ........ ++.+...... .+.+...+.. +.+..++...+...
T Consensus 305 y~~~~~~~s~~-~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~-~~~P~~~~~~~~~~i~~~~~~~~~~~--------- 373 (563)
T KOG1263|consen 305 YSGSTHPASEK-LPIYPFLPPGNDTAWSTYQARSIRSLLSASFA-RPVPQGSYHYGLITIGLTLKLCNSDN--------- 373 (563)
T ss_pred EeCCcccCccc-CcccccCCcccCchhhhhhhhcccccccccCc-ccCCCccccccceeeeccEEeccCCC---------
Confidence 99722222221 10 01 01111111 2222110000 0112222222 22222222211111
Q ss_pred eeeeecCCCceeeEEecceeccCCCCCccccc-CCCCCCCCCCCCCCccCCccccC-CccceeeEEEEecCCCEEEEEEE
Q psy4302 389 HRWFQSSPNVIKTHVTNNISLGILPFPILSQD-LPIPKEMECPKDRSVCGKSAEKG-GKLCECVEIIKVGLNQVAEIIFI 466 (613)
Q Consensus 389 ~~~~~~~~~~~~~~~iN~~s~~~p~~P~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~g~~ve~vl~ 466 (613)
..++...+.||++||..|..|++.+. ....+..+++... |.+....+ ...|.|+.++.++.++.|||+|+
T Consensus 374 ------~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p--~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlq 445 (563)
T KOG1263|consen 374 ------KNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFP--DKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQ 445 (563)
T ss_pred ------CCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccC--CCCccccCCccccccceEEEeecCCEEEEEEe
Confidence 13567789999999999998876543 3333344444221 21110000 11478999999999999999999
Q ss_pred eCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEe
Q psy4302 467 DWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHF 546 (613)
Q Consensus 467 N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~a 546 (613)
|. +......||||||||+||||+.|. +.+.. . + | ....+|+.+|+.||||.||++||++|||.|
T Consensus 446 N~-~~~~~~~hp~HLHG~~F~Vvg~g~-G~~~~--------~--~--d--~~~~yNl~dp~~R~Tv~V~pggw~aIrf~a 509 (563)
T KOG1263|consen 446 NT-STGTQENHPNHLHGYNFYVVGYGF-GNWDP--------A--K--D--PRKKYNLVDPVSRDTVQVPPGGWTAIRFVA 509 (563)
T ss_pred CC-ccccCCCCccceeceEEEEEEecc-cccCc--------C--c--C--hhhhcccCCCcccceEEeCCCCEEEEEEEc
Confidence 99 655567899999999999999987 66651 0 0 1 114689999999999999999999999999
Q ss_pred cCcceeEEeechhhhhhcCceEEEEeccCC----CCCCCCCCCCCCCCCC
Q psy4302 547 NNPGIWIMHCHFIFHTETGMNTVFQVGDRK----DFVQTPPEFPTCNNYL 592 (613)
Q Consensus 547 dNPG~Wl~HCHi~~H~~~GM~~~~~V~~~~----~~~~~p~~~p~C~~~~ 592 (613)
||||+|+||||+++|+..||+++|.|.+.+ ++.++|+++++||.-+
T Consensus 510 dNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~ 559 (563)
T KOG1263|consen 510 DNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRAS 559 (563)
T ss_pred CCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccC
Confidence 999999999999999999999999998654 3568999999999753
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=9.3e-88 Score=745.37 Aligned_cols=470 Identities=26% Similarity=0.406 Sum_probs=338.4
Q ss_pred ecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEe
Q psy4302 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFP 134 (613)
Q Consensus 55 ~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~ 134 (613)
+++||++|.+++||||+|||+|++++||+|+|+|+|+|+.++|+|||||++|++++||||+|++|||||+||++|+|+|+
T Consensus 20 ~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~ 99 (538)
T TIGR03390 20 IKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIK 99 (538)
T ss_pred eccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEE
Confidence 68899999999999999999999999999999999999768999999999999999999999999999999999999999
Q ss_pred ec--CCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCCCCceEEEEeeeccCCCCcccCCCCCC--CCCCCCc
Q psy4302 135 AM--PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYA--NFGTRTE 210 (613)
Q Consensus 135 ~~--~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d~~e~~l~l~d~~~~~~~~~~~~~~~~--~~~~~~~ 210 (613)
+. ++||||||||.+.|+. ||+|+|||++++.. .+++|. |.+|+|+||+++............ .....++
T Consensus 100 ~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~-----~~~~d~-e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d 172 (538)
T TIGR03390 100 PEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP-----PYKYDD-ERILLVSDFFSATDEEIEQGLLSTPFTWSGETE 172 (538)
T ss_pred ecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc-----CCCccC-cEEEEEeCCCCCCHHHHHhhhhccCCccCCCCc
Confidence 74 8999999999999987 59999999976321 244554 789999999998765432221111 1123568
Q ss_pred ceeecCcccccCCCC---CCCCCccceEEEeCCcEEEEEEEecCCCCCcEEEEEecee-eEEEEeCCcccceeeeeEEEE
Q psy4302 211 SFLINGRSVFKSGNG---TSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHR-MNLITVDGTPVQPQMFDSITI 286 (613)
Q Consensus 211 ~~lING~~~~~~~~~---~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~~i~gh~-~~via~DG~~v~P~~~d~l~l 286 (613)
++||||++.+.+... ....+..+.++|++||+|||||||+|... .+.|+|+||+ |+|||+||.+++|+.++.|.|
T Consensus 173 ~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~-~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l 251 (538)
T TIGR03390 173 AVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALS-LISLGIEDHENLTIIEADGSYTKPAKIDHLQL 251 (538)
T ss_pred eEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCce-EEEEEECCCCeEEEEEeCCCCCCceEeCeEEE
Confidence 999999976432100 01123457899999999999999999985 8999999999 999999999999999999999
Q ss_pred ccceeeeecccEEEEccCCc-------cC---------cCCCCceeEEEEecccCCCCCCCCCCCC---CCCccc--c--
Q psy4302 287 FPGQYTPVNSAIVLNINLDA-------AH---------MGSRRDRLNILRLRKSLNALDSSDCSDT---NPNVCW--N-- 343 (613)
Q Consensus 287 ~pgeR~~~~~dv~v~a~~~~-------~~---------~~~~~~~~ail~Y~~~~~~~~~~~~~~~---~~~~~~--~-- 343 (613)
++|||| ||+|+++++. ++ ........|||+|.+.........+..+ ....|. .
T Consensus 252 ~~GqRy----dVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 327 (538)
T TIGR03390 252 GGGQRY----SVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEY 327 (538)
T ss_pred ccCCEE----EEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhhe
Confidence 999999 9999999862 32 1223457899999753211110000100 000111 1
Q ss_pred cCcCCCCCCccccccCCCCceEEEEEEeeeeeccCccccCCcccceeeeecCCCceeeEEecceeccC--CCCCcccccC
Q psy4302 344 HVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGI--LPFPILSQDL 421 (613)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~--p~~P~l~~~~ 421 (613)
.|..+.+............+.++.+.+++... ..++...|.+|+++|.. |..|+|.+..
T Consensus 328 ~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~-------------------~~~g~~~~~~N~~s~~~~~~~~P~L~~~~ 388 (538)
T TIGR03390 328 ELEPLSEENNQDFPTLDEVTRRVVIDAHQNVD-------------------PLNGRVAWLQNGLSWTESVRQTPYLVDIY 388 (538)
T ss_pred eeEecCccccCCCCCCCcCceEEEEEcccccc-------------------ccCCeEEEEECCcccCCCCCCCchHHHHh
Confidence 12222111000001112335444444332100 01235679999999985 7788886554
Q ss_pred CCCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCCC-----CCCCCCeeeecCcEEEEEeccCCC
Q psy4302 422 PIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPT-----STFLHPMHLHGTDIYIIEQGIIPV 496 (613)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~~-----~~~~HPfHLHG~~F~Vl~~g~~~~ 496 (613)
....... ...+..- . ...+...+.++.++.|++|||+|+|. ... ....||||||||+||||++|. +.
T Consensus 389 ~~~~~~~-~~~~~~~--~---~~~~~~~~~~~~~~~~~~V~ivi~n~-~~~~~~~~~~~~HP~HlHGh~F~vlg~G~-G~ 460 (538)
T TIGR03390 389 ENGLPAT-PNYTAAL--A---NYGFDPETRAFPAKVGEVLEIVWQNT-GSYTGPNGGVDTHPFHAHGRHFYDIGGGD-GE 460 (538)
T ss_pred cCCCCcC-CCccccc--c---cCCcCcCceEEEcCCCCEEEEEEECC-cccccCCCCCCCCCeeecCCcEEEEcccc-cc
Confidence 2110000 0000000 0 00112245678899999999999997 310 247899999999999999986 44
Q ss_pred cccccccccchHHhhhccCCCCCCCCCCCCCccceEEcC----------CCcEEEEEEEecCcceeEEeechhhhhhcCc
Q psy4302 497 AEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIP----------PNGYTVVRVHFNNPGIWIMHCHFIFHTETGM 566 (613)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp----------~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM 566 (613)
++. +.. ...+|+.||++|||+.|| ++||++|||++||||.|+|||||+||+..||
T Consensus 461 ~~~------~~~---------~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm 525 (538)
T TIGR03390 461 YNA------TAN---------EAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGM 525 (538)
T ss_pred cCC------ccC---------hhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccc
Confidence 430 110 113578899999999996 7899999999999999999999999999999
Q ss_pred eEEEEeccCCCC
Q psy4302 567 NTVFQVGDRKDF 578 (613)
Q Consensus 567 ~~~~~V~~~~~~ 578 (613)
+++|.|.+.+++
T Consensus 526 ~~~~~~~~~~~~ 537 (538)
T TIGR03390 526 QTVWVFGDAEDI 537 (538)
T ss_pred eEEEEeCChHHc
Confidence 999999865543
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.4e-72 Score=621.91 Aligned_cols=430 Identities=25% Similarity=0.385 Sum_probs=299.7
Q ss_pred EEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEe
Q psy4302 22 CYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHW 101 (613)
Q Consensus 22 c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHw 101 (613)
.+|+|++++.. +..||+.+.+|+|||++|||+|++++||+|+|+|+|+|+ ++++|||
T Consensus 46 ~~~~L~v~~~~----------------------~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~-~~tsiHw 102 (587)
T TIGR01480 46 TEFDLTIGETM----------------------VNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLP-EDTSIHW 102 (587)
T ss_pred ceEEEEEEEEE----------------------EecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCC-CCceEEc
Confidence 67888888753 567899999999999999999999999999999999998 8999999
Q ss_pred CCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCCCCce
Q psy4302 102 HGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSH 181 (613)
Q Consensus 102 HGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d~~e~ 181 (613)
||+++. ++|||+|++|||+|+||++|+|+|++.++||||||||.+.|+++||+|+|||++++. + .+++|. |+
T Consensus 103 HGl~~~--~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~-~----p~~~D~-E~ 174 (587)
T TIGR01480 103 HGILLP--FQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP-D----PVRADR-EH 174 (587)
T ss_pred CCCcCC--ccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCCcc-c----cCCCCc-eE
Confidence 999986 479999999999999999999999999999999999999999999999999986532 2 234554 79
Q ss_pred EEEEeeeccCCCCcccCCC--------------------CCCCC------------------C------CCCcceeecCc
Q psy4302 182 TIIITDWLHGMTDAKFPGN--------------------TYANF------------------G------TRTESFLINGR 217 (613)
Q Consensus 182 ~l~l~d~~~~~~~~~~~~~--------------------~~~~~------------------~------~~~~~~lING~ 217 (613)
+|+|+||++....+.+... ....+ . .....+||||+
T Consensus 175 vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~ 254 (587)
T TIGR01480 175 VVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGT 254 (587)
T ss_pred EEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCc
Confidence 9999999976432221100 00000 0 00123789988
Q ss_pred ccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeeccc
Q psy4302 218 SVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSA 297 (613)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~d 297 (613)
.. ...+.+.+++|++|||||||+++. +.+.|+|+||+|+||++||.+++|+.++.|.|+||||| |
T Consensus 255 ~~----------~~~~~~~v~~G~rvRLR~INas~~-~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRy----D 319 (587)
T TIGR01480 255 TP----------AGNWTGLFRPGEKVRLRFINGSAM-TYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETF----D 319 (587)
T ss_pred cC----------CCCceEEECCCCEEEEEEEecCCC-ceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCccee----E
Confidence 64 223568999999999999999998 48999999999999999999999999999999999999 9
Q ss_pred EEEEccCCccC------cCCCCceeEEEEecccCCCCCCCCCCCCCCCcccccCcC------------------------
Q psy4302 298 IVLNINLDAAH------MGSRRDRLNILRLRKSLNALDSSDCSDTNPNVCWNHVNS------------------------ 347 (613)
Q Consensus 298 v~v~a~~~~~~------~~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------ 347 (613)
|+|++++.+.. ........++|++.+....+... ..+.+.....++..
T Consensus 320 VlV~~~~~g~~~i~a~~~~~~~~~~~~l~~~~~~~~~~p~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (587)
T TIGR01480 320 VIVEPTGDDAFTIFAQDSDRTGYARGTLAVRLGLTAPVPA--LDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSM 397 (587)
T ss_pred EEEecCCCceEEEEEEecCCCceEEEEEecCCCCCCCCCC--CCCccccChhhcccccccccccccccccCcccccCccc
Confidence 99998754332 23345667788876421110000 00000000000000
Q ss_pred ------------C-----CCCC--c--------cc-ccc--CCCCc------eEEEEEEe-eeeeccCccccCCccccee
Q psy4302 348 ------------L-----TPAT--E--------KA-TVL--KAVPD------IRLVFAVD-EYHFTRDSLFWNDEDEYHR 390 (613)
Q Consensus 348 ------------~-----~~~~--~--------~~-~~~--~~~pd------~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 390 (613)
+ ...+ . .+ ... ...|. ....+.+. +.... ..+.....+.-..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~-~~~~~~~p~r~~~ 476 (587)
T TIGR01480 398 RAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLF-PPPDGRAPGREIE 476 (587)
T ss_pred cccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccc-cccCcCCCCceEE
Confidence 0 0000 0 00 000 00000 00000000 00000 0000000000000
Q ss_pred eeecCCCceeeEEecceeccCCCCCcccccCCCCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCC
Q psy4302 391 WFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIG 470 (613)
Q Consensus 391 ~~~~~~~~~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~ 470 (613)
+.-...-..+.|.|||..|.. ...+.++.|++|+|.|.|. +
T Consensus 477 ~~L~g~m~~~~wtiNG~~~~~--------------------------------------~~pl~v~~Gervri~l~N~-t 517 (587)
T TIGR01480 477 LHLTGNMERFAWSFDGEAFGL--------------------------------------KTPLRFNYGERLRVVLVND-T 517 (587)
T ss_pred EEEcCCCceeEEEECCccCCC--------------------------------------CCceEecCCCEEEEEEECC-C
Confidence 000001124467888766521 1136799999999999998 4
Q ss_pred CCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCcc
Q psy4302 471 PTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPG 550 (613)
Q Consensus 471 ~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNPG 550 (613)
.+.||||||||.|+|+..+. . .+++|||+.|++++.+.++|.+||||
T Consensus 518 ---~~~HpmHlHG~~f~v~~~~G--~----------------------------~~~~~dTv~V~Pg~t~~~~f~ad~pG 564 (587)
T TIGR01480 518 ---MMAHPIHLHGMWSELEDGQG--E----------------------------FQVRKHTVDVPPGGKRSFRVTADALG 564 (587)
T ss_pred ---CCCcceeEcCceeeeecCCC--c----------------------------ccccCCceeeCCCCEEEEEEECCCCe
Confidence 46999999999999986532 1 13588999999999999999999999
Q ss_pred eeEEeechhhhhhcCceEEEEe
Q psy4302 551 IWIMHCHFIFHTETGMNTVFQV 572 (613)
Q Consensus 551 ~Wl~HCHi~~H~~~GM~~~~~V 572 (613)
.|+||||++.|++.||+..|+|
T Consensus 565 ~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 565 RWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred EEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999999999999999987
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=9.3e-69 Score=589.13 Aligned_cols=407 Identities=22% Similarity=0.320 Sum_probs=280.6
Q ss_pred CeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecC-
Q psy4302 59 GVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP- 137 (613)
Q Consensus 59 G~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~- 137 (613)
|....+|+|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++.+ .+||+| ||+|+||++|+|+|++++
T Consensus 62 ~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~-~~ttiHwHGl~~~~--~~DG~p---q~~I~PG~s~~Y~f~~~q~ 135 (523)
T PRK10965 62 KTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLP-EETTLHWHGLEVPG--EVDGGP---QGIIAPGGKRTVTFTVDQP 135 (523)
T ss_pred CceeEEEEECCCCCCceEEEECCCEEEEEEEECCC-CCccEEcccccCCC--ccCCCC---CCCCCCCCEEEEEeccCCC
Confidence 45557999999999999999999999999999998 89999999999975 499987 899999999999999985
Q ss_pred CCceEEeecC----cccccCCceeeEEEeCCCCCCC-CCCCCCCCCCceEEEEeeeccCCCCcccCCC--CCCCCCCCCc
Q psy4302 138 YGTFFYHSHI----GFQKMDGLEGPLVIRRPKKADP-NRDQYDTDYPSHTIIITDWLHGMTDAKFPGN--TYANFGTRTE 210 (613)
Q Consensus 138 ~GT~wyH~H~----~~q~~~Gl~G~liV~~~~~~~p-~~~~~d~d~~e~~l~l~d~~~~~~~~~~~~~--~~~~~~~~~~ 210 (613)
+||||||||. +.|+++||+|+|||+++.+... ....|+.+ |.+|+|+||.++......... .....+..++
T Consensus 136 aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~--d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd 213 (523)
T PRK10965 136 AATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVD--DIPVILQDKRFSADGQIDYQLDVMTAAVGWFGD 213 (523)
T ss_pred CceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCc--eeeEEEEeeeeCCCCceeccccccccccCccCC
Confidence 8999999995 7999999999999998754321 22234433 799999999987654432211 1112345778
Q ss_pred ceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcEEEEE-eceeeEEEEeCCccc-ceeeeeEEEEcc
Q psy4302 211 SFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFV-EKHRMNLITVDGTPV-QPQMFDSITIFP 288 (613)
Q Consensus 211 ~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~d~l~l~p 288 (613)
.+||||+.+ |.+.++ +++|||||||+|.. +.++|++ ++|+|+|||+||+++ +|+.++.|.|+|
T Consensus 214 ~~lVNG~~~-------------p~~~v~-~~~~RlRliNas~~-r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lap 278 (523)
T PRK10965 214 TLLTNGAIY-------------PQHAAP-RGWLRLRLLNGCNA-RSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILM 278 (523)
T ss_pred eEEECCccc-------------ceeecC-CCEEEEEEEeccCC-ceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECc
Confidence 999999987 677775 67999999999987 5899998 899999999999987 699999999999
Q ss_pred ceeeeecccEEEEccCCccC---------cC----CCCceeEEEEecccCCCCCCCCCCCCCCCcccccCcCCCCCCccc
Q psy4302 289 GQYTPVNSAIVLNINLDAAH---------MG----SRRDRLNILRLRKSLNALDSSDCSDTNPNVCWNHVNSLTPATEKA 355 (613)
Q Consensus 289 geR~~~~~dv~v~a~~~~~~---------~~----~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (613)
|||| ||+|++++.+.. .. .......++++..... ... ... ...+..+.+.+.
T Consensus 279 GeR~----dvlv~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~------P~~l~~~~~~~~-- 343 (523)
T PRK10965 279 GERF----EVLVDTSDGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLI--SAS-GTL------PDSLASLPALPS-- 343 (523)
T ss_pred cceE----EEEEEcCCCceEEEEEecccCcccccccCCCceeEEEEeccCc--CCC-CcC------ChhhccCCCCCc--
Confidence 9999 999999874321 00 0111345565553110 000 000 011222221111
Q ss_pred cccCCCCceEEEEEEeeeeeccCcc---ccC-Ccccceeee----ecC-----------C----C----ceeeEEeccee
Q psy4302 356 TVLKAVPDIRLVFAVDEYHFTRDSL---FWN-DEDEYHRWF----QSS-----------P----N----VIKTHVTNNIS 408 (613)
Q Consensus 356 ~~~~~~pd~~~~l~~~~~~~~~~~~---~~~-~~~~~~~~~----~~~-----------~----~----~~~~~~iN~~s 408 (613)
......+++.+.+.... +...+ +.. ......... ... . + ....|+|||++
T Consensus 344 --~~~~~~r~~~l~~~~~~-~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~ 420 (523)
T PRK10965 344 --LEGLTVRRLQLSMDPRL-DMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKA 420 (523)
T ss_pred --ccccceeEEEEeecccc-chhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeE
Confidence 00112233333331100 00000 000 000000000 000 0 0 00113677766
Q ss_pred ccCCCCCcccccCCCCCCCCCCCCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEE
Q psy4302 409 LGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYI 488 (613)
Q Consensus 409 ~~~p~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~V 488 (613)
|.. ....+.++.|++++|.|+|. +. ...|||||||++|+|
T Consensus 421 ~~~-------------------------------------~~~~~~~~~G~~e~w~i~N~-~~--~~~Hp~HlHg~~F~V 460 (523)
T PRK10965 421 FDM-------------------------------------NKPMFAAKKGQYERWVISGV-GD--MMLHPFHIHGTQFRI 460 (523)
T ss_pred CCC-------------------------------------CCcceecCCCCEEEEEEEeC-CC--CCccCeEEeCcEEEE
Confidence 531 11246799999999999998 42 258999999999999
Q ss_pred EEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEe----cCcceeEEeechhhhhhc
Q psy4302 489 IEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHF----NNPGIWIMHCHFIFHTET 564 (613)
Q Consensus 489 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~a----dNPG~Wl~HCHi~~H~~~ 564 (613)
|++++.+.. ...+.|||||.|++ +.+.|++++ +++|.|+|||||++|+|.
T Consensus 461 l~~~g~~~~-------------------------~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~ 514 (523)
T PRK10965 461 LSENGKPPA-------------------------AHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDT 514 (523)
T ss_pred EEecCCCCC-------------------------ccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhcc
Confidence 999763211 13357999999987 666555554 567899999999999999
Q ss_pred CceEEEEe
Q psy4302 565 GMNTVFQV 572 (613)
Q Consensus 565 GM~~~~~V 572 (613)
|||..|.|
T Consensus 515 GMM~~~~V 522 (523)
T PRK10965 515 GMMLGFTV 522 (523)
T ss_pred CccceeEe
Confidence 99999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1e-66 Score=568.26 Aligned_cols=378 Identities=16% Similarity=0.199 Sum_probs=273.3
Q ss_pred CCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecC
Q psy4302 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMP 137 (613)
Q Consensus 58 dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~ 137 (613)
.|..+.+|+|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++... .+||++ ++|+||++|+|+|++++
T Consensus 61 ~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~ 134 (471)
T PRK10883 61 GGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQ 134 (471)
T ss_pred CCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCC
Confidence 367889999999999999999999999999999998 899999999999865 577764 58999999999999874
Q ss_pred -CCceEEeecC----cccccCCceeeEEEeCCCCCC-CCCCCCCCCCCceEEEEeeeccCCCCcccCCCCCCCCCCCCcc
Q psy4302 138 -YGTFFYHSHI----GFQKMDGLEGPLVIRRPKKAD-PNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTES 211 (613)
Q Consensus 138 -~GT~wyH~H~----~~q~~~Gl~G~liV~~~~~~~-p~~~~~d~d~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (613)
+||||||||. +.|+.+||+|+|||+++.+.. +....|+.+ |++|+|+||..+........ .....+..++.
T Consensus 135 ~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~--d~~l~l~D~~~~~~g~~~~~-~~~~~g~~gd~ 211 (471)
T PRK10883 135 NAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVD--DFPVIIQDKRLDNFGTPEYN-EPGSGGFVGDT 211 (471)
T ss_pred CceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCc--ceeEEeeeeeeccCCCcccc-ccccCCccCCe
Confidence 9999999995 469999999999999875432 222234444 79999999998765432211 11224567889
Q ss_pred eeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcEEEEE-eceeeEEEEeCCccc-ceeeeeEEEEccc
Q psy4302 212 FLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFV-EKHRMNLITVDGTPV-QPQMFDSITIFPG 289 (613)
Q Consensus 212 ~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~d~l~l~pg 289 (613)
+||||+.. |.++|++| +|||||||+|+. +.+.|+| ++|+|+|||+||+++ +|..++.|.|+||
T Consensus 212 ~lvNG~~~-------------p~~~v~~~-~~RlRliNas~~-~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pG 276 (471)
T PRK10883 212 LLVNGVQS-------------PYVEVSRG-WVRLRLLNASNA-RRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPG 276 (471)
T ss_pred eEECCccC-------------CeEEecCC-EEEEEEEEccCC-ceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCC
Confidence 99999987 78999875 899999999998 5899999 899999999997776 6999999999999
Q ss_pred eeeeecccEEEEccCCccC---cCCCC----------------ceeEEEEecccCCCCCCCCCCCCCCCcccccCcCCCC
Q psy4302 290 QYTPVNSAIVLNINLDAAH---MGSRR----------------DRLNILRLRKSLNALDSSDCSDTNPNVCWNHVNSLTP 350 (613)
Q Consensus 290 eR~~~~~dv~v~a~~~~~~---~~~~~----------------~~~ail~Y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (613)
||| ||+|++++.+.. ..... ....+++...... . ....... ...+....
T Consensus 277 eR~----dvlVd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~-p~~l~~~~- 344 (471)
T PRK10883 277 ERR----EILVDMSNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL----L--PLVTDNL-PMRLLPDE- 344 (471)
T ss_pred CeE----EEEEECCCCceEEEECCCccccccccccccCCccccccceeEEEEcccc----c--cCCCCcC-ChhhcCCC-
Confidence 999 999999762210 00000 0011122111000 0 0000000 00000000
Q ss_pred CCccccccCCCCceEEEEEEeeeeeccCccccCCcccceeeeecCCCceeeEEecceeccCCCCCcccccCCCCCCCCCC
Q psy4302 351 ATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECP 430 (613)
Q Consensus 351 ~~~~~~~~~~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~ 430 (613)
.....+..+..+.++ . ..|.|||..|...
T Consensus 345 ------~~~~~~~~~~~~~l~------------------------~---~~~~INg~~~~~~------------------ 373 (471)
T PRK10883 345 ------IMEGSPIRSREISLG------------------------D---DLPGINGALWDMN------------------ 373 (471)
T ss_pred ------CCCCCCcceEEEEec------------------------C---CcCccCCcccCCC------------------
Confidence 000112222222110 0 0245888777421
Q ss_pred CCCCccCCccccCCccceeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHh
Q psy4302 431 KDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQER 510 (613)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~ 510 (613)
...+.+++|++++|.|.|. +.|||||||+.|||+++++.+..
T Consensus 374 -------------------~~~~~~~~g~~e~W~~~n~------~~HP~HlHg~~FqVl~~~G~~~~------------- 415 (471)
T PRK10883 374 -------------------RIDVTAQQGTWERWTVRAD------MPQAFHIEGVMFLIRNVNGAMPF------------- 415 (471)
T ss_pred -------------------cceeecCCCCEEEEEEECC------CCcCEeECCccEEEEEecCCCCC-------------
Confidence 1235789999999999776 37999999999999999752111
Q ss_pred hhccCCCCCCCCCCCCCccceEEcCCCcEEEEEEEecCcc----eeEEeechhhhhhcCceEEEEecc
Q psy4302 511 LAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQVGD 574 (613)
Q Consensus 511 ~~~~~~~~~~~n~~~p~~kDTv~Vp~~g~~vIrf~adNPG----~Wl~HCHi~~H~~~GM~~~~~V~~ 574 (613)
.....|||||.|+ +.+.|+++++++| .|||||||++|+|.|||..|+|..
T Consensus 416 ------------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 416 ------------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ------------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 1224699999996 4699999999988 799999999999999999999953
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-55 Score=480.80 Aligned_cols=399 Identities=25% Similarity=0.356 Sum_probs=282.3
Q ss_pred eeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEE
Q psy4302 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYK 132 (613)
Q Consensus 53 ~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~ 132 (613)
++...++.....+.+||++|||+|++++||+|+|+++|+|. +.|+|||||+..+ +.+||++..+|+++.||++++|.
T Consensus 43 ~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~-~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~ 119 (451)
T COG2132 43 QLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLL-VDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYT 119 (451)
T ss_pred ceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCC-CCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEe
Confidence 45667788889999999999999999999999999999987 4499999998876 57999999999999999999999
Q ss_pred EeecCCCceEEeecCcccccCCceeeEEEeCCCCCCCCCCCCCCCCCceEEEEeeeccCCCCcccCCCCCCCCCCCCcce
Q psy4302 133 FPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212 (613)
Q Consensus 133 f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~p~~~~~d~d~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (613)
|+.+.+||||||+|...|+.+||+|++||+++.+.. +++|. +.+++..+|........+.. .....+...+..
T Consensus 120 f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~-----~~~d~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 192 (451)
T COG2132 120 FTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENSEP-----LGVDD-EPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTL 192 (451)
T ss_pred ecCCCCcceEeccCCCchhhcccceeEEEeCCCCCC-----CCCCc-eEEEEEeeeecCCCCccccC-CccccCCCCCeE
Confidence 999988899999999999999999999999874432 25564 56666777776665443332 223456788999
Q ss_pred eecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceee
Q psy4302 213 LINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYT 292 (613)
Q Consensus 213 lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~ 292 (613)
+|||+.. +. ...++.+|||||+|++.. +.+++++.+++|+||++||.+++|..+|.+.|.||||+
T Consensus 193 ~vnG~~~-------------p~-~~~~~g~~rlRl~n~~~~-~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~ 257 (451)
T COG2132 193 LVNGAIL-------------PF-KAVPGGVVRLRLLNAGNA-RTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERY 257 (451)
T ss_pred EECCCcc-------------ce-eecCCCeEEEEEEecCCc-eEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceE
Confidence 9999665 44 444556799999999966 47899999999999999999999999999999999999
Q ss_pred eecccEEEEccCCccC-----c-CCCCceeEEEEecccCCCCCCCCCCCCCCCccccc--CcCCCCCCccccccCCCCce
Q psy4302 293 PVNSAIVLNINLDAAH-----M-GSRRDRLNILRLRKSLNALDSSDCSDTNPNVCWNH--VNSLTPATEKATVLKAVPDI 364 (613)
Q Consensus 293 ~~~~dv~v~a~~~~~~-----~-~~~~~~~ail~Y~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~pd~ 364 (613)
||+++++..+.. . .......+.........+ ... ...........+ ......... .....+.
T Consensus 258 ----~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~- 327 (451)
T COG2132 258 ----EVLVDMNDGGAVTLTALGEDMPDTLKGFRAPNPILTP-SYP-VLNGRVGAPTGDMADHAPVGLLV---TILVEPG- 327 (451)
T ss_pred ----EEEEEcCCCCeEEEEeccccCCceeeeeecccccccc-ccc-cccccccCCCcchhhccccccch---hhcCCCc-
Confidence 999999873221 1 000111111111100000 000 000000000000 000000000 0000000
Q ss_pred EEEEEEeeeeeccCccccCCcccceeeeecCCCceeeEEecceeccCCCCCcccccCCCCCCCCCCCCCCccCCccccCC
Q psy4302 365 RLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGG 444 (613)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (613)
.+....+. .........|.+|+..|..
T Consensus 328 ----------~~~~~~~~----------l~~~~~~~~~~~n~~~~~~--------------------------------- 354 (451)
T COG2132 328 ----------PNRDTDFH----------LIGGIGGYVWAINGKAFDD--------------------------------- 354 (451)
T ss_pred ----------ccccccch----------hhcccccccccccCccCCC---------------------------------
Confidence 00000000 0000111234455444321
Q ss_pred ccceeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCC
Q psy4302 445 KLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524 (613)
Q Consensus 445 ~~~~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 524 (613)
....+.++.|++++|+|.|. + .+.|||||||+.|+|++.+. +. ...
T Consensus 355 ----~~~~~~~~~G~~~~~~i~n~-~---~~~HP~HlHg~~F~v~~~~~-~~-------------------------~~~ 400 (451)
T COG2132 355 ----NRVTLIAKAGTRERWVLTND-T---PMPHPFHLHGHFFQVLSGDA-PA-------------------------PGA 400 (451)
T ss_pred ----CcCceeecCCCEEEEEEECC-C---CCccCeEEcCceEEEEecCC-Cc-------------------------ccc
Confidence 12457899999999999999 4 36999999999999999871 11 124
Q ss_pred CCCccceEEcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEec
Q psy4302 525 QPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573 (613)
Q Consensus 525 ~p~~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~ 573 (613)
.+.||||+.+.++..++|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 401 ~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 401 APGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred cCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 5789999999999999999999999999999999999999999999875
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=4.7e-43 Score=363.33 Aligned_cols=257 Identities=18% Similarity=0.221 Sum_probs=206.2
Q ss_pred CCCceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCC-C
Q psy4302 17 AKPMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD-R 95 (613)
Q Consensus 17 ~~~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~-~ 95 (613)
+.+.+.+|+|++++.. ....+|+.+.+|+|||++|||+|++++||+|+|+|+|++.. .
T Consensus 23 ~~~~~~~~~l~a~~~~---------------------~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~ 81 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKK---------------------MVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTM 81 (311)
T ss_pred CCCcEEEEEEEEEEEE---------------------EEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCC
Confidence 4568889999999753 12357999999999999999999999999999999999852 4
Q ss_pred ceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeec----CcccccCCceeeEEEeCCCCCCCCC
Q psy4302 96 VVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSH----IGFQKMDGLEGPLVIRRPKKADPNR 171 (613)
Q Consensus 96 ~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H----~~~q~~~Gl~G~liV~~~~~~~p~~ 171 (613)
++++||||. .++||++.++| |+||++++|+|+++++|||||||| ++.|+..||+|+|||++++.. +
T Consensus 82 ~h~~h~H~~-----~~~dg~~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~-~-- 151 (311)
T TIGR02376 82 PHNVDFHAA-----TGALGGAALTQ--VNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL-P-- 151 (311)
T ss_pred ceeeeecCC-----CccCCCCccee--ECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC-c--
Confidence 789999996 25899988887 999999999999999999999999 468999999999999976321 1
Q ss_pred CCCCCCCCceEEEEeeeccCCCCccc---CCCCCCCCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEE
Q psy4302 172 DQYDTDYPSHTIIITDWLHGMTDAKF---PGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRII 248 (613)
Q Consensus 172 ~~~d~d~~e~~l~l~d~~~~~~~~~~---~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRli 248 (613)
++|. |++|+++||++....... ...........++.++|||+..- ..+.+.+++|+++|||||
T Consensus 152 ---~~d~-e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~----------~~~~~~v~~G~~~RlRii 217 (311)
T TIGR02376 152 ---EYDK-EYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGA----------LTGDNALTAGVGERVLFV 217 (311)
T ss_pred ---Ccce-eEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCC----------CCCCcccccCCcEEEEEE
Confidence 3343 789999999986543211 10000112245689999999540 114568999999999999
Q ss_pred ecCCCCCcEEEEEeceeeEEEEeCCcccceee--eeEEEEccceeeeecccEEEEccCCccC--------cCCCCceeEE
Q psy4302 249 GGSCLACPMLFFVEKHRMNLITVDGTPVQPQM--FDSITIFPGQYTPVNSAIVLNINLDAAH--------MGSRRDRLNI 318 (613)
Q Consensus 249 N~~~~~~~~~~~i~gh~~~via~DG~~v~P~~--~d~l~l~pgeR~~~~~dv~v~a~~~~~~--------~~~~~~~~ai 318 (613)
|++.. +.+.|+++||.+++|+.||.++.|.. ++++.|+||||+ ||+|++++++.. ........|+
T Consensus 218 Na~~~-~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~----dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~ 292 (311)
T TIGR02376 218 HSQPN-RDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAA----AALYTFEQPGVYAYVDHNLIEAFEKGAAAQ 292 (311)
T ss_pred cCCCC-CCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceE----EEEEEeCCCeEEEEECcHHHHHHhCCCEEE
Confidence 99976 47899999999999999999998644 899999999999 999999987652 1124457799
Q ss_pred EEecc
Q psy4302 319 LRLRK 323 (613)
Q Consensus 319 l~Y~~ 323 (613)
|+|.+
T Consensus 293 i~~~g 297 (311)
T TIGR02376 293 VKVEG 297 (311)
T ss_pred EEECC
Confidence 99986
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=9.2e-35 Score=258.41 Aligned_cols=110 Identities=42% Similarity=0.805 Sum_probs=103.4
Q ss_pred eecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEE
Q psy4302 54 CVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKF 133 (613)
Q Consensus 54 ~~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f 133 (613)
-+..+|..+.+|+|||++|||+|+|++||+|+|+|+|+|. ++++|||||+++...+|+||+++++||+|+||++|+|+|
T Consensus 6 ~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~ 84 (117)
T PF07732_consen 6 TVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEF 84 (117)
T ss_dssp EEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEE
T ss_pred EEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCcccccceeEEeecceeeeE
Confidence 3566777799999999999999999999999999999997 899999999999998999999999999999999999999
Q ss_pred eecC-CCceEEeecCcccccCCceeeEEEeCC
Q psy4302 134 PAMP-YGTFFYHSHIGFQKMDGLEGPLVIRRP 164 (613)
Q Consensus 134 ~~~~-~GT~wyH~H~~~q~~~Gl~G~liV~~~ 164 (613)
++++ +||||||||...|..+||+|+|||+++
T Consensus 85 ~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 85 TANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9998 999999999988888999999999976
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.95 E-value=3.3e-28 Score=223.91 Aligned_cols=109 Identities=35% Similarity=0.680 Sum_probs=94.3
Q ss_pred ccceeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCC
Q psy4302 445 KLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524 (613)
Q Consensus 445 ~~~~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 524 (613)
..+.++.++.++.|++|||+|+|. + ...|||||||++|+|++++...... . +...+++.
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~-~---~~~Hp~HlHG~~F~vl~~~~~~~~~-------~----------~~~~~~~~ 86 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNN-G---SMPHPFHLHGHSFQVLGRGGGPWNP-------D----------DTQSYNPE 86 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEEC-T---TSSEEEEETTSEEEEEEETTEESTT-------H----------CGGCCCSS
T ss_pred ccCCCcceEEEeCCCEEEEEEECC-C---CCccceEEEeeEEEeeecCCccccc-------c----------cccccccc
Confidence 455678899999999999999998 4 4599999999999999998733211 0 23456789
Q ss_pred CCCccceEEcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEecc
Q psy4302 525 QPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574 (613)
Q Consensus 525 ~p~~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~ 574 (613)
+|.+|||+.|+++|+++|||+++|||.|+|||||++|++.|||++|.|.+
T Consensus 87 ~~~~~DTv~v~~~~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 87 NPGWRDTVLVPPGGWVVIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp SSSEESEEEEETTEEEEEEEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred cCcccccccccceeEEEEEEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.90 E-value=1.7e-23 Score=197.24 Aligned_cols=139 Identities=25% Similarity=0.431 Sum_probs=114.8
Q ss_pred ceEEEEeeeccCCCCcccCCCCCC-----CCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCC
Q psy4302 180 SHTIIITDWLHGMTDAKFPGNTYA-----NFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLA 254 (613)
Q Consensus 180 e~~l~l~d~~~~~~~~~~~~~~~~-----~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~ 254 (613)
|++|+++||+++.....+...... ..+..++++||||++.+.+..........+.+.|++|++|||||||+++..
T Consensus 2 e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~ 81 (159)
T PF00394_consen 2 EYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAST 81 (159)
T ss_dssp GGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-
T ss_pred eEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCe
Confidence 799999999998877655433321 126789999999999987664444556679999999999999999999984
Q ss_pred CcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccCCccC-------------cCCCCceeEEEEe
Q psy4302 255 CPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAAH-------------MGSRRDRLNILRL 321 (613)
Q Consensus 255 ~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~~-------------~~~~~~~~ail~Y 321 (613)
.+.|+|+||+|+|||+||.+++|..+++|.|+||||| ||+|+++++++. ......+.|||+|
T Consensus 82 -~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~----dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 82 -SFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRY----DVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEE----EEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred -eEEEEeeccceeEeeeccccccccccceEEeeCCeEE----EEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 8999999999999999999999999999999999999 999999995541 2345678999999
Q ss_pred cc
Q psy4302 322 RK 323 (613)
Q Consensus 322 ~~ 323 (613)
.+
T Consensus 157 ~~ 158 (159)
T PF00394_consen 157 DG 158 (159)
T ss_dssp TT
T ss_pred CC
Confidence 85
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.79 E-value=7.6e-19 Score=162.14 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=86.8
Q ss_pred ecCCCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCC--CCceeEEeCCCcccCCCCCCCCCccccccCCCC----Ce
Q psy4302 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIV--DRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPE----TT 128 (613)
Q Consensus 55 ~~~dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~--~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG----~~ 128 (613)
..+.+....-+.++| ++||+|+|++||+|+|+|+|.+. ...+.||+||...+..+.|||++.++||+|.|+ +.
T Consensus 34 ~~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~ 112 (148)
T TIGR03095 34 GPMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKF 112 (148)
T ss_pred EcCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcc
Confidence 344566667778888 66999999999999999999964 245777777776655556999999999999884 11
Q ss_pred --EEEEEeecCCCceEEeecCcccccCCceeeEEEe
Q psy4302 129 --YRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIR 162 (613)
Q Consensus 129 --~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~ 162 (613)
.++.|+++++||||||||+..|+.+||+|.|||+
T Consensus 113 ~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 113 GYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred ceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 3456666699999999999999999999999995
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.59 E-value=2.5e-15 Score=167.64 Aligned_cols=102 Identities=19% Similarity=0.316 Sum_probs=87.1
Q ss_pred CCeEEeEEEECCCCCCC--eEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCC---CccccccCCCCCeEEEE
Q psy4302 58 DGVERPILTINRRLPSP--SIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGV---PLLTQCPIIPETTYRYK 132 (613)
Q Consensus 58 dG~~~~~~~iNg~~PGP--~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv---~~vtq~pI~pG~~~~Y~ 132 (613)
++..+.+|+|||+.+++ .|++++||+|+|++.|.+. .++.|||||+..... ..||. ...| ..|+||++++|.
T Consensus 481 g~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~-~~~G~~~~~~dT-v~V~Pg~t~~~~ 557 (587)
T TIGR01480 481 GNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELE-DGQGEFQVRKHT-VDVPPGGKRSFR 557 (587)
T ss_pred CCCceeEEEECCccCCCCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeee-cCCCcccccCCc-eeeCCCCEEEEE
Confidence 34568889999998875 7999999999999999997 899999999976432 23563 2223 689999999999
Q ss_pred EeecCCCceEEeecCcccccCCceeeEEEe
Q psy4302 133 FPAMPYGTFFYHSHIGFQKMDGLEGPLVIR 162 (613)
Q Consensus 133 f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~ 162 (613)
|.++++|+||||||...|...||++.+.|.
T Consensus 558 f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 558 VTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred EECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 999999999999999999999999999874
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.41 E-value=3.7e-11 Score=125.19 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=76.4
Q ss_pred EEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCC-ccce
Q psy4302 453 IKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPC-VKDT 531 (613)
Q Consensus 453 ~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~-~kDT 531 (613)
+.++.|++++|+|+|. +. +..+.||++|++|+++..++. . +..+. ..||
T Consensus 204 ~~v~~G~~~RlRiiNa-~~--~~~~~~~~~g~~~~~v~~DG~-~--------------------------~~~~~~~~~~ 253 (311)
T TIGR02376 204 NALTAGVGERVLFVHS-QP--NRDSRPHLIGGHGDYVWVTGK-F--------------------------ANPPNRDVET 253 (311)
T ss_pred cccccCCcEEEEEEcC-CC--CCCCCCeEecCCceEEEECCc-c--------------------------cCCCCCCcce
Confidence 4678899999999998 53 457899999999999998641 1 11122 3789
Q ss_pred EEcCCCcEEEEEEEecCcceeEEeechhhhh-hcCceEEEEecc
Q psy4302 532 VTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGD 574 (613)
Q Consensus 532 v~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~-~~GM~~~~~V~~ 574 (613)
+.|.+|+...|.|+++.||.|++|||...|. ..||+++|.+..
T Consensus 254 ~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 254 WFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred EEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 9999999999999999999999999999988 779999998853
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.18 E-value=1.9e-09 Score=119.70 Aligned_cols=230 Identities=16% Similarity=0.144 Sum_probs=135.5
Q ss_pred CeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEe-CCCcccCCCCCCCCCc-----cccccCCCCCeEEEE
Q psy4302 59 GVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHW-HGVYQRHTPHSDGVPL-----LTQCPIIPETTYRYK 132 (613)
Q Consensus 59 G~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHw-HGl~~~~~~~~DGv~~-----vtq~pI~pG~~~~Y~ 132 (613)
|.....++|||+. .|.+.+. |.++++|++|........+.+ .|..... ...||.+. +.+..|.||++++..
T Consensus 209 g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~v-Ia~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 209 GWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYV-IASDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred CccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEE-EEeCCCcccCccEeCeEEECccceEEEE
Confidence 4445678999995 7888885 679999999998766677776 4543221 35898553 234569999999999
Q ss_pred EeecCCCceEEeecCccccc------CCceeeEEEeCCCCCC----CCC----CCCCC--CCC--ceEEEEeeeccC---
Q psy4302 133 FPAMPYGTFFYHSHIGFQKM------DGLEGPLVIRRPKKAD----PNR----DQYDT--DYP--SHTIIITDWLHG--- 191 (613)
Q Consensus 133 f~~~~~GT~wyH~H~~~q~~------~Gl~G~liV~~~~~~~----p~~----~~~d~--d~~--e~~l~l~d~~~~--- 191 (613)
+++.+.|.++...-...+.. +.-+-.+.|......+ |.. ..... +.. ...|.+..+...
T Consensus 286 v~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m 365 (523)
T PRK10965 286 VDTSDGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGM 365 (523)
T ss_pred EEcCCCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhh
Confidence 99888787777664221111 1011123333211110 100 00000 111 112222111100
Q ss_pred -----CCC-cccC--------CCC-C------CC----CCCCC---cceeecCcccccCCCCCCCCCccceEEEeCCcEE
Q psy4302 192 -----MTD-AKFP--------GNT-Y------AN----FGTRT---ESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRH 243 (613)
Q Consensus 192 -----~~~-~~~~--------~~~-~------~~----~~~~~---~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~ 243 (613)
... .... ... . .. .+... ..++|||+.+- ...+.++++.|++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~---------~~~~~~~~~~G~~e 436 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD---------MNKPMFAAKKGQYE 436 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC---------CCCcceecCCCCEE
Confidence 000 0000 000 0 00 00001 12589999861 12366889999999
Q ss_pred EEEEEecCCCCCcEEEEEeceeeEEEEeCCcccc---eeeeeEEEEccceeeeecccEEEEccCCc
Q psy4302 244 RFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQ---PQMFDSITIFPGQYTPVNSAIVLNINLDA 306 (613)
Q Consensus 244 rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~---P~~~d~l~l~pgeR~~~~~dv~v~a~~~~ 306 (613)
+|+|+|.+... .+-|||||+.|.|++.||.+.+ +...|+|.|.+ +++ .|+++++.++
T Consensus 437 ~w~i~N~~~~~-~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~----~i~~~f~~~~ 496 (523)
T PRK10965 437 RWVISGVGDMM-LHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRS----EVLVKFDHDA 496 (523)
T ss_pred EEEEEeCCCCC-ccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEE----EEEEEecCCC
Confidence 99999998532 3445599999999999999875 35789999977 788 8999887654
No 25
>PRK10883 FtsI repressor; Provisional
Probab=99.12 E-value=1.9e-09 Score=118.66 Aligned_cols=216 Identities=15% Similarity=0.100 Sum_probs=129.7
Q ss_pred CeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEe-CCCcccCCCCCCCCCc-----cccccCCCCCeEEEE
Q psy4302 59 GVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHW-HGVYQRHTPHSDGVPL-----LTQCPIIPETTYRYK 132 (613)
Q Consensus 59 G~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHw-HGl~~~~~~~~DGv~~-----vtq~pI~pG~~~~Y~ 132 (613)
|.....++|||+. .|.|.|+.| ++++|++|........+++ .|..... ...||.+. +++-.|.||++++..
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~v-Ia~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHV-IAGDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEE-EEeCCCcccCCcEeCeEEECCCCeEEEE
Confidence 4456679999985 799999875 8999999999877888888 6653221 34786443 345678999999999
Q ss_pred EeecCCCceEEeecCcccccCCcee------------eEEEeCCCCCCCCCCCCCCCCCceEEEEeeeccCCCCcccCCC
Q psy4302 133 FPAMPYGTFFYHSHIGFQKMDGLEG------------PLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGN 200 (613)
Q Consensus 133 f~~~~~GT~wyH~H~~~q~~~Gl~G------------~liV~~~~~~~p~~~~~d~d~~e~~l~l~d~~~~~~~~~~~~~ 200 (613)
.++.+.+.+..++-......+++.+ .+-++......+. +..++...+.. ........... .
T Consensus 283 Vd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~l~~~-~~~~~~~~~~~--~ 355 (471)
T PRK10883 283 VDMSNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLV----TDNLPMRLLPD-EIMEGSPIRSR--E 355 (471)
T ss_pred EECCCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCC----CCcCChhhcCC-CCCCCCCcceE--E
Confidence 9987766666665211111111111 1111111000000 00000000000 00000000000 0
Q ss_pred CCCCCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccce--
Q psy4302 201 TYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQP-- 278 (613)
Q Consensus 201 ~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P-- 278 (613)
+ . ...+.++|||+.+- .....+.++.|++++|+|.|.. .|++| ||+|.|+|++.||....|
T Consensus 356 ~-~---l~~~~~~INg~~~~---------~~~~~~~~~~g~~e~W~~~n~~--~HP~H--lHg~~FqVl~~~G~~~~~~~ 418 (471)
T PRK10883 356 I-S---LGDDLPGINGALWD---------MNRIDVTAQQGTWERWTVRADM--PQAFH--IEGVMFLIRNVNGAMPFPED 418 (471)
T ss_pred E-E---ecCCcCccCCcccC---------CCcceeecCCCCEEEEEEECCC--CcCEe--ECCccEEEEEecCCCCCccc
Confidence 0 0 01123479999861 1223578999999999999873 35655 999999999999986644
Q ss_pred -eeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 279 -QMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 279 -~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
.+.|+|.+. +++ .|+++++.+++
T Consensus 419 ~gwkDTV~v~--~~v----~i~~~f~~~~~ 442 (471)
T PRK10883 419 RGWKDTVWVD--GQV----ELLVYFGQPSW 442 (471)
T ss_pred cCcCcEEEcC--CeE----EEEEEecCCCC
Confidence 457999994 468 99999987664
No 26
>PLN02835 oxidoreductase
Probab=99.07 E-value=1.2e-08 Score=113.74 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=143.9
Q ss_pred EeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEEEeecC
Q psy4302 62 RPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYKFPAMP 137 (613)
Q Consensus 62 ~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~f~~~~ 137 (613)
...++|||+. .|+++|++|+++++|++|........+|..|..+.. ...||.+. +.+-.|.||++++..+++++
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V-I~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE-EEECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 3568999997 489999999999999999998778999999987643 46899753 22446999999999999975
Q ss_pred -CCceEEeecCcccc-cCCceeeEEEeCCCC-C-C--CCCCCCCC--CCC---ceEEEEeeeccCCCCc---ccCCCC-C
Q psy4302 138 -YGTFFYHSHIGFQK-MDGLEGPLVIRRPKK-A-D--PNRDQYDT--DYP---SHTIIITDWLHGMTDA---KFPGNT-Y 202 (613)
Q Consensus 138 -~GT~wyH~H~~~q~-~~Gl~G~liV~~~~~-~-~--p~~~~~d~--d~~---e~~l~l~d~~~~~~~~---~~~~~~-~ 202 (613)
+|.||..+-..... .....+.|..+.... . . |.....+. +.. .....+.......... ...... .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 79999997432111 111233333332210 0 0 11001110 000 0000011111000000 000000 0
Q ss_pred ------C-CC-CCCCcceeecCcccccCCC-----------C---------CC----CCCccceEEEeCCcEEEEEEEec
Q psy4302 203 ------A-NF-GTRTESFLINGRSVFKSGN-----------G---------TS----NPVPYSKFKVNKGLRHRFRIIGG 250 (613)
Q Consensus 203 ------~-~~-~~~~~~~lING~~~~~~~~-----------~---------~~----~~~~~~~~~v~~G~~~rlRliN~ 250 (613)
. .. ......|.|||..+-.... + .. .......+.++.|+.+.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 0 00 0011357788887521000 0 00 00112346778899999999999
Q ss_pred CCCCCcEEEEEeceeeEEEEe-CCcc----------cceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 251 SCLACPMLFFVEKHRMNLITV-DGTP----------VQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 251 ~~~~~~~~~~i~gh~~~via~-DG~~----------v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
....|++| ||||.|.|++. +|.. ..|..+|++.+.++..+ -|-|.+|+||.
T Consensus 429 ~~~~HP~H--LHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~----~IrF~aDNPG~ 490 (539)
T PLN02835 429 EKTMQSWH--LDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWT----TILVSLDNQGM 490 (539)
T ss_pred CCCCCCCC--CCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEE----EEEEECcCCEE
Confidence 87666666 99999999987 5522 23899999999999999 99999999988
No 27
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.07 E-value=7.8e-10 Score=99.09 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=74.2
Q ss_pred CCceEEEEEEEeEeeecccccccCCCCCccccccceeecCCCeEEeEE-EECCCCCCCeEEEecCCEEEEEEEECCCC-C
Q psy4302 18 KPMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGVERPIL-TINRRLPSPSIQVCRGDTIVVDVKNKIVD-R 95 (613)
Q Consensus 18 ~~~~c~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~-~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~-~ 95 (613)
+.-.++|+.+|+-|.+.. | .....|+....| .+|+++..+.|+|++||+|+++|.|.... .
T Consensus 21 ~~~~~~f~~~i~~~~~~~------~-----------~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H 83 (135)
T TIGR03096 21 QAAEQSFTVVINAYDTTI------P-----------ELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISE 83 (135)
T ss_pred hhccceeEEEEeccccEe------e-----------EEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCcc
Confidence 344568999999665321 0 233567777766 99999999999999999999999998752 2
Q ss_pred ceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecC
Q psy4302 96 VVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHI 147 (613)
Q Consensus 96 ~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~ 147 (613)
...|++||+ +-.|+||++.+|+|+++++|+|||||-.
T Consensus 84 ~f~i~~~gi---------------s~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 84 GFSIDAYGI---------------SEVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred ceEECCCCc---------------ceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 234444432 2258999999999999999999999964
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.01 E-value=3.1e-08 Score=111.19 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=139.7
Q ss_pred eEEEECCCC-C--------CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeE
Q psy4302 63 PILTINRRL-P--------SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTY 129 (613)
Q Consensus 63 ~~~~iNg~~-P--------GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~ 129 (613)
..++|||+. + -++|.|++|+++++|++|........+|.+|..+.. .+.||++. +..-.|.||+++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V-Ia~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV-VEVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE-EEeCCcccCceEeCeEEecCCCEE
Confidence 468999984 1 148999999999999999987667889999987643 46899752 234569999999
Q ss_pred EEEEeecC-CCceEEeecCcc--cc--c-CCceeeEEEeCCCCCC-CCCC---CCCCCCC-----c--eEEEEee--ecc
Q psy4302 130 RYKFPAMP-YGTFFYHSHIGF--QK--M-DGLEGPLVIRRPKKAD-PNRD---QYDTDYP-----S--HTIIITD--WLH 190 (613)
Q Consensus 130 ~Y~f~~~~-~GT~wyH~H~~~--q~--~-~Gl~G~liV~~~~~~~-p~~~---~~d~d~~-----e--~~l~l~d--~~~ 190 (613)
+..+++++ +|.||.+++... +. . ....+.|...+..... |... .++.... + ..+.... +..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 99999975 899999997421 11 1 1122333333221111 1111 0110000 0 0000000 000
Q ss_pred -CCCCcc----cCCCCCC-------CCCCCCcceeecCcccccCC--------------------C---------CCC--
Q psy4302 191 -GMTDAK----FPGNTYA-------NFGTRTESFLINGRSVFKSG--------------------N---------GTS-- 227 (613)
Q Consensus 191 -~~~~~~----~~~~~~~-------~~~~~~~~~lING~~~~~~~--------------------~---------~~~-- 227 (613)
...... +...... .+....-.|.|||..+.... . +..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 000000 0000000 00011124578887531000 0 000
Q ss_pred ----CCCccceEEEeCCcEEEEEEEecCC---CCCcEEEEEeceeeEEEEeC-Ccc-----------cceeeeeEEEEcc
Q psy4302 228 ----NPVPYSKFKVNKGLRHRFRIIGGSC---LACPMLFFVEKHRMNLITVD-GTP-----------VQPQMFDSITIFP 288 (613)
Q Consensus 228 ----~~~~~~~~~v~~G~~~rlRliN~~~---~~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~p 288 (613)
.......+.++.|++++|.|.|.+. ..|++| ||||.|.|++.+ |.+ ..|..+|++.+.+
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~H--LHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~ 483 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIH--LHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPT 483 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEe--EcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCC
Confidence 0001235788999999999999853 246655 999999999886 321 2378899999999
Q ss_pred ceeeeecccEEEEccCCcc
Q psy4302 289 GQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 289 geR~~~~~dv~v~a~~~~~ 307 (613)
+..+ -|-+++++||.
T Consensus 484 ~g~v----virf~adNPG~ 498 (539)
T TIGR03389 484 GGWA----AIRFVADNPGV 498 (539)
T ss_pred CceE----EEEEecCCCeE
Confidence 9999 99999999987
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89 E-value=7.9e-08 Score=105.85 Aligned_cols=228 Identities=16% Similarity=0.156 Sum_probs=142.2
Q ss_pred CCeEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCC----ccccccCCCCCeEEEEE
Q psy4302 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP----LLTQCPIIPETTYRYKF 133 (613)
Q Consensus 58 dG~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~----~vtq~pI~pG~~~~Y~f 133 (613)
-|.......|||+. -| +.+.++..+++|+.|........+++.|.++.. -..||.+ .+.+-.+.||++++...
T Consensus 185 ~~~~g~~~~vnG~~-~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v 261 (451)
T COG2132 185 GGFPGDTLLVNGAI-LP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLV 261 (451)
T ss_pred cCCCCCeEEECCCc-cc-eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEE
Confidence 35567778888854 34 445556669999999985466777777665543 3478866 46677899999999999
Q ss_pred eecCCCceEEeecCcccccCCceeeEEEeCCCCC-CCCC------CCCCC-CCCceEEEEeeeccCCCCcccCCCCCCCC
Q psy4302 134 PAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKA-DPNR------DQYDT-DYPSHTIIITDWLHGMTDAKFPGNTYANF 205 (613)
Q Consensus 134 ~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~-~p~~------~~~d~-d~~e~~l~l~d~~~~~~~~~~~~~~~~~~ 205 (613)
+..+.|++-+.+.. .+..+-+.+..-....... .+.. ...+. +. ...........+.... .........
T Consensus 262 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~ 338 (451)
T COG2132 262 DMNDGGAVTLTALG-EDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADH-APVGLLVTILVEPGPN-RDTDFHLIG 338 (451)
T ss_pred EcCCCCeEEEEecc-ccCCceeeeeeccccccccccccccccccCCCcchhhc-cccccchhhcCCCccc-ccccchhhc
Confidence 99889999999986 3333333333222111000 0000 00110 00 1111111111111100 000000111
Q ss_pred CCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEEEEEEEecCCCCCcEEEEEeceeeEEEEeCCccc---ceeeee
Q psy4302 206 GTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV---QPQMFD 282 (613)
Q Consensus 206 ~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v---~P~~~d 282 (613)
......+.|||+.+- .....+.++.|+++||+|.|-+...|++| |||+.|.|++.| ... .+...|
T Consensus 339 ~~~~~~~~~n~~~~~---------~~~~~~~~~~G~~~~~~i~n~~~~~HP~H--lHg~~F~v~~~~-~~~~~~~~~~kD 406 (451)
T COG2132 339 GIGGYVWAINGKAFD---------DNRVTLIAKAGTRERWVLTNDTPMPHPFH--LHGHFFQVLSGD-APAPGAAPGWKD 406 (451)
T ss_pred ccccccccccCccCC---------CCcCceeecCCCEEEEEEECCCCCccCeE--EcCceEEEEecC-CCcccccCccce
Confidence 233456888888761 12467889999999999999998655555 999999999998 322 257899
Q ss_pred EEEEccceeeeecccEEEEccCCcc
Q psy4302 283 SITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 283 ~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
++.+.|++++ .+.++++.++.
T Consensus 407 Tv~v~~~~~~----~v~~~a~~~g~ 427 (451)
T COG2132 407 TVLVAPGERL----LVRFDADYPGP 427 (451)
T ss_pred EEEeCCCeEE----EEEEeCCCCCc
Confidence 9999999999 99999998875
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.85 E-value=1.5e-07 Score=105.62 Aligned_cols=223 Identities=13% Similarity=0.143 Sum_probs=129.2
Q ss_pred eEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEEEeecC--CCceEEeecCc
Q psy4302 75 SIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYKFPAMP--YGTFFYHSHIG 148 (613)
Q Consensus 75 ~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~f~~~~--~GT~wyH~H~~ 148 (613)
.|.|++|+++++||+|........+++.|..+.. ...||.+. +..-.|.||++++..+++++ .|.||.++-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 5899999999999999987678888888877643 46899653 23446999999999999975 35899987643
Q ss_pred cc---ccCCceeeEEEeCC-CCCC-C-----CCCCCCCC-----CCceEEEE--eeeccCCCCcc-cCCCCCCCCCCCCc
Q psy4302 149 FQ---KMDGLEGPLVIRRP-KKAD-P-----NRDQYDTD-----YPSHTIII--TDWLHGMTDAK-FPGNTYANFGTRTE 210 (613)
Q Consensus 149 ~q---~~~Gl~G~liV~~~-~~~~-p-----~~~~~d~d-----~~e~~l~l--~d~~~~~~~~~-~~~~~~~~~~~~~~ 210 (613)
.+ ...++ +++.... .... + ....++.. .....+.. ........... +.... ........
T Consensus 283 ~~~~~~~~~~--aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (541)
T TIGR03388 283 GRKPNTPPGL--TVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNT-QNKINGYT 359 (541)
T ss_pred cCCCCCccEE--EEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEecc-CcccCceE
Confidence 32 11122 3333221 1111 1 00111110 00000000 00000000000 00000 00001112
Q ss_pred ceeecCcccccCCC---------------C--C-----------------CCCCccceEEEeCCcEEEEEEEecCC----
Q psy4302 211 SFLINGRSVFKSGN---------------G--T-----------------SNPVPYSKFKVNKGLRHRFRIIGGSC---- 252 (613)
Q Consensus 211 ~~lING~~~~~~~~---------------~--~-----------------~~~~~~~~~~v~~G~~~rlRliN~~~---- 252 (613)
.|.+||..+..... . . ........+.++.|+++.|.|.|...
T Consensus 360 ~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~ 439 (541)
T TIGR03388 360 KWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGN 439 (541)
T ss_pred EEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCC
Confidence 36788876521000 0 0 00001235788999999999999742
Q ss_pred --CCCcEEEEEeceeeEEEEeC-Ccc-----------cceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 253 --LACPMLFFVEKHRMNLITVD-GTP-----------VQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 253 --~~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
..|++| ||||+|.|++.. |.+ ..|..+|++.+.++.-+ -|-|.+++||.
T Consensus 440 ~~~~HP~H--LHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwv----vIRF~adNPG~ 502 (541)
T TIGR03388 440 NSETHPWH--LHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWT----ALRFVADNPGV 502 (541)
T ss_pred CCCCCcEE--ecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceE----EEEEECCCCeE
Confidence 235555 999999999987 332 13788999999999999 88999999987
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.76 E-value=7.7e-07 Score=99.32 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=140.7
Q ss_pred eEEEECCCCC-CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEEEeecC
Q psy4302 63 PILTINRRLP-SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYKFPAMP 137 (613)
Q Consensus 63 ~~~~iNg~~P-GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~f~~~~ 137 (613)
..++|||+.+ .|+|+|++|+++++|++|........++..|..+.. ...||.+- +.+-.|.|||+++..+++++
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLL-VETEGTYVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEE-EEECCeECCCceeeEEEEcCCceEEEEEEcCC
Confidence 4689999953 679999999999999999987667888888877643 36899642 33557999999999999963
Q ss_pred -C-C---ceEEeecCc--ccccCCceeeEEEeCCCCC--CCCCC--CC-CCCC-CceEEEEe-eec---cCCCCc---cc
Q psy4302 138 -Y-G---TFFYHSHIG--FQKMDGLEGPLVIRRPKKA--DPNRD--QY-DTDY-PSHTIIIT-DWL---HGMTDA---KF 197 (613)
Q Consensus 138 -~-G---T~wyH~H~~--~q~~~Gl~G~liV~~~~~~--~p~~~--~~-d~d~-~e~~l~l~-d~~---~~~~~~---~~ 197 (613)
. | .||..+-.. .+...+ .|.|........ .|... .+ +... .+..+.+. ... ...... ..
T Consensus 268 ~~~g~~~~Y~i~a~~~~~~~~~~~-~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 268 DPVGIYRSYYIVATARFTDAYLGG-VALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCcceEEEEEEecccCCCcce-EEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 3 4 899988742 222222 233333222111 11110 00 1100 00000000 000 000000 00
Q ss_pred -C----CCCCCCC----CCCCcceeecCcccccCCC----------------C-CCCC-------CccceEEEeCCcEEE
Q psy4302 198 -P----GNTYANF----GTRTESFLINGRSVFKSGN----------------G-TSNP-------VPYSKFKVNKGLRHR 244 (613)
Q Consensus 198 -~----~~~~~~~----~~~~~~~lING~~~~~~~~----------------~-~~~~-------~~~~~~~v~~G~~~r 244 (613)
. ....... ......+.|||..+-.... + .... .....+.++.|+.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 0 0000000 0011347788877521100 0 0000 013457889999999
Q ss_pred EEEEecCCCCCcEEEEEeceeeEEEEeC-----C------cccceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 245 FRIIGGSCLACPMLFFVEKHRMNLITVD-----G------TPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 245 lRliN~~~~~~~~~~~i~gh~~~via~D-----G------~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
+=|-|.....|++| ||||.|.|++.- + ++..|..+|++.+.++.-+ -|-|.+++||.
T Consensus 427 iViqn~~~~~HP~H--LHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~----vIRF~aDNPG~ 494 (545)
T PLN02168 427 IVFQNPLFSLESYH--IDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWT----AILIAMDNQGM 494 (545)
T ss_pred EEEeCCCCCCCCee--eCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEE----EEEEEccCCeE
Confidence 98998876656666 999999999761 1 2345899999999999999 89999999987
No 32
>PLN02991 oxidoreductase
Probab=98.75 E-value=9.7e-07 Score=98.39 Aligned_cols=238 Identities=10% Similarity=0.087 Sum_probs=139.5
Q ss_pred EeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEEEeecC
Q psy4302 62 RPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYKFPAMP 137 (613)
Q Consensus 62 ~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~f~~~~ 137 (613)
-..++|||+...++|.|++|+++++|++|........++..|..+.. ...||.+- +.+-.|.|||+++...++++
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKL-VEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEE-EEeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 45789999976689999999999999999988667888888877643 35899752 33557999999999999986
Q ss_pred -CCceEEeecCcccccCCceeeEEEeCCCCCC----CCCCC-CCCCCCceEEEEeeeccC-----CC-Cc--cc----CC
Q psy4302 138 -YGTFFYHSHIGFQKMDGLEGPLVIRRPKKAD----PNRDQ-YDTDYPSHTIIITDWLHG-----MT-DA--KF----PG 199 (613)
Q Consensus 138 -~GT~wyH~H~~~q~~~Gl~G~liV~~~~~~~----p~~~~-~d~d~~e~~l~l~d~~~~-----~~-~~--~~----~~ 199 (613)
.|.||.-.-.... ...+.+.-|++=..... +.... .+.+...-.....++... .. .. .. ..
T Consensus 269 ~~~~y~i~~~~~~~-~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFT-SKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccC-CCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 6789877653211 11122233333211110 10000 000000000000000000 00 00 00 00
Q ss_pred -CC--CCCCC--CCCcceeecCcccccCCC-----------CC---------C----CCCccceEEEeCCcEEEEEEEec
Q psy4302 200 -NT--YANFG--TRTESFLINGRSVFKSGN-----------GT---------S----NPVPYSKFKVNKGLRHRFRIIGG 250 (613)
Q Consensus 200 -~~--~~~~~--~~~~~~lING~~~~~~~~-----------~~---------~----~~~~~~~~~v~~G~~~rlRliN~ 250 (613)
.. ....+ ...-.+.|||..+..... +. . .......+.++.|+.+.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 00 00000 011246778776531100 00 0 00112346678889999988887
Q ss_pred CCCCCcEEEEEeceeeEEEEeCC-----------cccceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 251 SCLACPMLFFVEKHRMNLITVDG-----------TPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 251 ~~~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
....|++| ||||.|.|++... ++..|..+|++.+.++.-+ -|-|.+++||.
T Consensus 428 ~~~~HP~H--LHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~----vIRF~aDNPG~ 489 (543)
T PLN02991 428 EDIVQTWH--LDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWT----AIYVSLDNVGM 489 (543)
T ss_pred CCCCCCee--eCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEE----EEEEECCCCEE
Confidence 76656666 9999999998542 1234889999999999999 89999999987
No 33
>PLN02354 copper ion binding / oxidoreductase
Probab=98.74 E-value=6.4e-07 Score=100.30 Aligned_cols=238 Identities=10% Similarity=0.068 Sum_probs=141.5
Q ss_pred eEEEECCCCC------CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEE
Q psy4302 63 PILTINRRLP------SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYK 132 (613)
Q Consensus 63 ~~~~iNg~~P------GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~ 132 (613)
..++|||+.. -|+|.|++|++.++||+|........+|..|..+.. ...||++- +.+-.|.|||+++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKL-VEMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEE-EEeCCcccCCcceeEEEEccCceEEEE
Confidence 4689999842 378999999999999999998778899999987643 46899752 234569999999999
Q ss_pred EeecC-CCceEEeecCccccc-CCceeeEEEeCCCCCC-CCCC--CCCC--CC---CceEEEEeeeccCCCC--c-cc--
Q psy4302 133 FPAMP-YGTFFYHSHIGFQKM-DGLEGPLVIRRPKKAD-PNRD--QYDT--DY---PSHTIIITDWLHGMTD--A-KF-- 197 (613)
Q Consensus 133 f~~~~-~GT~wyH~H~~~q~~-~Gl~G~liV~~~~~~~-p~~~--~~d~--d~---~e~~l~l~d~~~~~~~--~-~~-- 197 (613)
+++++ +|.||..+....... ....|.|...+..... +... ..+. .. ......+.-....... . ..
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 99985 899999988532111 1123333333221100 0000 0000 00 0000000000000000 0 00
Q ss_pred ---CCCC--CC--CCCCCCcceeecCcccccC------------CCCCC---------------CCCccceEEEeCCcEE
Q psy4302 198 ---PGNT--YA--NFGTRTESFLINGRSVFKS------------GNGTS---------------NPVPYSKFKVNKGLRH 243 (613)
Q Consensus 198 ---~~~~--~~--~~~~~~~~~lING~~~~~~------------~~~~~---------------~~~~~~~~~v~~G~~~ 243 (613)
.... .. ......-.+.|||..+-.. ..+.. .......+.++.|+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0000 00 0000113467888764210 00100 0011235678889999
Q ss_pred EEEEEecCCCCCcEEEEEeceeeEEEEeCC-----------cccceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 244 RFRIIGGSCLACPMLFFVEKHRMNLITVDG-----------TPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 244 rlRliN~~~~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
.+-|.|.....||+| ||||.|.|++.-- +...|..+|++.+.++.-. -|-|.+|+||.
T Consensus 429 eiVi~n~~~~~HP~H--LHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~----vIRF~aDNPGv 497 (552)
T PLN02354 429 EIIFENHEKSMQSWH--LDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWA----AILLTFDNAGM 497 (552)
T ss_pred EEEEeCCCCCCCCCc--CCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeE----EEEEEecCCeE
Confidence 999999876666666 9999999997642 1234889999999999988 88999999987
No 34
>PLN02604 oxidoreductase
Probab=98.72 E-value=6.6e-07 Score=100.92 Aligned_cols=224 Identities=13% Similarity=0.156 Sum_probs=129.8
Q ss_pred CeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEEEeecCC-C-ceEEeecC
Q psy4302 74 PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYKFPAMPY-G-TFFYHSHI 147 (613)
Q Consensus 74 P~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~f~~~~~-G-T~wyH~H~ 147 (613)
++|.|++|+++++||+|........++.-|..+.. ...||++- +..-.|.||++++..+++++. | .||-.+..
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~V-Ia~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEE-EEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 47999999999999999988778888888876543 46899753 234568999999999999863 4 79998753
Q ss_pred cc---cccCCceeeEEEeCCCC-CC-CCC----CCCCC-CCC-ceEEEE---eeeccCCC---CcccCCCCCCCCCC--C
Q psy4302 148 GF---QKMDGLEGPLVIRRPKK-AD-PNR----DQYDT-DYP-SHTIII---TDWLHGMT---DAKFPGNTYANFGT--R 208 (613)
Q Consensus 148 ~~---q~~~Gl~G~liV~~~~~-~~-p~~----~~~d~-d~~-e~~l~l---~d~~~~~~---~~~~~~~~~~~~~~--~ 208 (613)
.. +...|+ +.|-.++... .. +.. ..++. +.. .....+ ........ ...+.. . ..... .
T Consensus 303 ~~~~~~~~~~~-aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-~~~~~~~~ 379 (566)
T PLN02604 303 VSRNNTTPPGL-AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVL-L-NTQNEVNG 379 (566)
T ss_pred ccCCCCCccee-EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEE-e-ccccccCC
Confidence 21 233332 2222222110 10 110 00100 000 000000 00000000 000000 0 00001 1
Q ss_pred CcceeecCcccccCC-----------CC------C------------------CCCCccceEEEeCCcEEEEEEEecCC-
Q psy4302 209 TESFLINGRSVFKSG-----------NG------T------------------SNPVPYSKFKVNKGLRHRFRIIGGSC- 252 (613)
Q Consensus 209 ~~~~lING~~~~~~~-----------~~------~------------------~~~~~~~~~~v~~G~~~rlRliN~~~- 252 (613)
...|.|||..+.... .+ . ........+.++.|++|.+.|.|...
T Consensus 380 ~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~ 459 (566)
T PLN02604 380 YRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTM 459 (566)
T ss_pred eEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccc
Confidence 235778887642100 00 0 00011234788999999999999852
Q ss_pred -----CCCcEEEEEeceeeEEEEeC-Ccc-----------cceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 253 -----LACPMLFFVEKHRMNLITVD-GTP-----------VQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 253 -----~~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
..|++| ||||+|.|++.. |.+ ..|..+|++.+.++.-+ -|-+.+|+||.
T Consensus 460 ~~~~~~~HP~H--LHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwv----vIRF~aDNPG~ 525 (566)
T PLN02604 460 NANNSETHPWH--LHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWT----ALRFRADNPGV 525 (566)
T ss_pred cCCCCCCCCEE--ecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceE----EEEEECCCCeE
Confidence 235555 999999999987 432 13788999999999999 88999999887
No 35
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.71 E-value=1.8e-08 Score=92.46 Aligned_cols=89 Identities=22% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc---------------cccccCCCCCeEEEEEeecC
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL---------------LTQCPIIPETTYRYKFPAMP 137 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~---------------vtq~pI~pG~~~~Y~f~~~~ 137 (613)
.+.+.++.|+.|++.+.|... .++.+|+||....... .++.+. .--..|+||+..+.+|+++.
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~-~~Hp~HlHG~~F~vl~-~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGS-MPHPFHLHGHSFQVLG-RGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTT-SSEEEEETTSEEEEEE-ETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred cceEEEeCCCEEEEEEECCCC-CccceEEEeeEEEeee-cCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 578999999999999999877 7999999998763211 122111 01135889999999999999
Q ss_pred CCceEEeecCcccccCCceeeEEEeC
Q psy4302 138 YGTFFYHSHIGFQKMDGLEGPLVIRR 163 (613)
Q Consensus 138 ~GT~wyH~H~~~q~~~Gl~G~liV~~ 163 (613)
+|.|.||||...+...||.+.+.|.+
T Consensus 111 ~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 111 PGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999975
No 36
>PLN02792 oxidoreductase
Probab=98.69 E-value=1.6e-06 Score=96.69 Aligned_cols=238 Identities=12% Similarity=0.096 Sum_probs=141.2
Q ss_pred EeEEEECCCC--CCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCC---c-cccccCCCCCeEEEEEee
Q psy4302 62 RPILTINRRL--PSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP---L-LTQCPIIPETTYRYKFPA 135 (613)
Q Consensus 62 ~~~~~iNg~~--PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~---~-vtq~pI~pG~~~~Y~f~~ 135 (613)
...++|||+- ..++|.|++|+++++||+|........++..|..+.. ...||.+ . ++.-.|.|||+++..+++
T Consensus 179 ~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tV-I~~DG~~v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 179 PDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKL-IEVEGTHTVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred CCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEE-EEeCCccCCCcceeEEEEccCceEEEEEEc
Confidence 3578999983 2478999999999999999988777889998877643 4689964 2 234569999999999999
Q ss_pred cC-CCceEEeecCcccccCCceeeEEEe--CCCCCCC---CCCCC-CCCCCceEEEEeeeccCCCCc--------cc---
Q psy4302 136 MP-YGTFFYHSHIGFQKMDGLEGPLVIR--RPKKADP---NRDQY-DTDYPSHTIIITDWLHGMTDA--------KF--- 197 (613)
Q Consensus 136 ~~-~GT~wyH~H~~~q~~~Gl~G~liV~--~~~~~~p---~~~~~-d~d~~e~~l~l~d~~~~~~~~--------~~--- 197 (613)
++ +|.||........ ...+.+.-|++ ......+ ....+ +.+.........++....... ..
T Consensus 258 ~~~~g~Y~i~a~~~~~-~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 258 DQPPQNYSIVVSTRFI-AAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred CCCCceEEEEEEeccC-CCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 86 6899998774321 11123333333 2111101 00001 111000000000111000000 00
Q ss_pred C--CCC--CCCCC--CCCcceeecCcccccCC-----------CCC------CCC--------CccceEEEeCCcEEEEE
Q psy4302 198 P--GNT--YANFG--TRTESFLINGRSVFKSG-----------NGT------SNP--------VPYSKFKVNKGLRHRFR 246 (613)
Q Consensus 198 ~--~~~--~~~~~--~~~~~~lING~~~~~~~-----------~~~------~~~--------~~~~~~~v~~G~~~rlR 246 (613)
. ... ..... ...-.+.|||..+-... .+. ... .....+.++.|+.+.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 00000 01124667877642100 000 000 01345678999999999
Q ss_pred EEecCCCCCcEEEEEeceeeEEEEeC-C----------cccceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 247 IIGGSCLACPMLFFVEKHRMNLITVD-G----------TPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 247 liN~~~~~~~~~~~i~gh~~~via~D-G----------~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
|-|.....|++| ||||+|.||+.- | ++..|..+|++.+.++.-. -|-|.+|+||.
T Consensus 417 iqn~~~~~HP~H--LHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~----aIRf~aDNPGv 482 (536)
T PLN02792 417 FQNREKIVQSYH--LDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWT----AVYVALDNVGM 482 (536)
T ss_pred EECCCCCCCCee--eCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEE----EEEEEeeCCEE
Confidence 999766556666 999999999752 1 2345899999999999999 99999999987
No 37
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.66 E-value=1.4e-06 Score=97.65 Aligned_cols=237 Identities=14% Similarity=0.099 Sum_probs=133.8
Q ss_pred eEEEECCCC---------------CCCeEEEecCCEEEEEEEECCCCCceeEEeCCCc-ccCCCCCCCCCc----ccccc
Q psy4302 63 PILTINRRL---------------PSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVY-QRHTPHSDGVPL----LTQCP 122 (613)
Q Consensus 63 ~~~~iNg~~---------------PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~-~~~~~~~DGv~~----vtq~p 122 (613)
..++|||+. ..|+|+|++|+++++|++|........+++.|.. +.. ...||++- +.+-.
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~V-Ia~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTI-IEADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEE-EEeCCCCCCceEeCeEE
Confidence 468899983 1378999999999999999988667888888866 432 35899742 22345
Q ss_pred CCCCCeEEEEEeecCC--------CceEEeecCc--ccccCCceeeEEEeCCCCCC-C---CCCCCCC-----CCCceEE
Q psy4302 123 IIPETTYRYKFPAMPY--------GTFFYHSHIG--FQKMDGLEGPLVIRRPKKAD-P---NRDQYDT-----DYPSHTI 183 (613)
Q Consensus 123 I~pG~~~~Y~f~~~~~--------GT~wyH~H~~--~q~~~Gl~G~liV~~~~~~~-p---~~~~~d~-----d~~e~~l 183 (613)
|.||++++..+++++. |-||..+-.. .+... ..+.|..++..... + .....+. +..+..+
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~-~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYR-GYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcce-EEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 9999999999999853 8899876532 12211 23333332221111 1 0000000 0001111
Q ss_pred E-Eeee-----ccCC-CCcccCCCCC-CCC-CCCCcceeecCcccccC-C----------CCCC-------------CCC
Q psy4302 184 I-ITDW-----LHGM-TDAKFPGNTY-ANF-GTRTESFLINGRSVFKS-G----------NGTS-------------NPV 230 (613)
Q Consensus 184 ~-l~d~-----~~~~-~~~~~~~~~~-~~~-~~~~~~~lING~~~~~~-~----------~~~~-------------~~~ 230 (613)
. +..- .... ....+.-... ... ......|+|||..+-.. . .+.. ...
T Consensus 330 ~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
T TIGR03390 330 EPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDP 409 (538)
T ss_pred EecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCc
Confidence 1 1000 0000 0000000000 000 01124578898865210 0 0000 001
Q ss_pred ccceEEEeCCcEEEEEEEecC--------CCCCcEEEEEeceeeEEEEe-CCcc-----------cceeeeeEEEEc---
Q psy4302 231 PYSKFKVNKGLRHRFRIIGGS--------CLACPMLFFVEKHRMNLITV-DGTP-----------VQPQMFDSITIF--- 287 (613)
Q Consensus 231 ~~~~~~v~~G~~~rlRliN~~--------~~~~~~~~~i~gh~~~via~-DG~~-----------v~P~~~d~l~l~--- 287 (613)
....+.++.|++++|.|.|.. ...|++ |||||+|.||+. +|.+ ..|..+|++.+.
T Consensus 410 ~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~--HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~ 487 (538)
T TIGR03390 410 ETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPF--HAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYA 487 (538)
T ss_pred CceEEEcCCCCEEEEEEECCcccccCCCCCCCCCe--eecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccc
Confidence 122577899999999999974 233555 499999999985 3432 238889999884
Q ss_pred -------cceeeeecccEEEEccCCcc
Q psy4302 288 -------PGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 288 -------pgeR~~~~~dv~v~a~~~~~ 307 (613)
++.-+ -|-+.+++||.
T Consensus 488 ~~~~~~~~~~~~----~ir~~~dNPG~ 510 (538)
T TIGR03390 488 VKVVPGAPAGWR----AWRIRVTNPGV 510 (538)
T ss_pred ccccccCCCceE----EEEEEcCCCee
Confidence 66666 77777887776
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.50 E-value=6.6e-06 Score=92.83 Aligned_cols=234 Identities=12% Similarity=0.116 Sum_probs=133.1
Q ss_pred EEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEEEeecC-C-
Q psy4302 65 LTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYKFPAMP-Y- 138 (613)
Q Consensus 65 ~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~f~~~~-~- 138 (613)
+++||+.-.++|.|++|++.++|++|........+++.|..+.. ...||++- +.+-.|.||++++..+++++ +
T Consensus 217 ~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~ 295 (574)
T PLN02191 217 FKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVV-VEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPS 295 (574)
T ss_pred eccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEE-EEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCC
Confidence 44666543247999999999999999987778888888877643 46899764 22456999999999999986 4
Q ss_pred CceEEeecCcccc---cCCceeeEEEeCCCCCC-CCC-----CCCCC-CCC-ce-EEEEeeeccCCC-----CcccCCCC
Q psy4302 139 GTFFYHSHIGFQK---MDGLEGPLVIRRPKKAD-PNR-----DQYDT-DYP-SH-TIIITDWLHGMT-----DAKFPGNT 201 (613)
Q Consensus 139 GT~wyH~H~~~q~---~~Gl~G~liV~~~~~~~-p~~-----~~~d~-d~~-e~-~l~l~d~~~~~~-----~~~~~~~~ 201 (613)
+.||-..-...+. .+++ +.|-........ +.. ..++. ... .. ...+........ ...+....
T Consensus 296 ~~y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 374 (574)
T PLN02191 296 QNYYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNT 374 (574)
T ss_pred CCEEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecc
Confidence 5899987543221 1232 333332221111 110 01110 000 00 000000000000 00000000
Q ss_pred CCCCCCCCcceeecCcccccCCCC-------------C---------------------CCCCccceEEEeCCcEEEEEE
Q psy4302 202 YANFGTRTESFLINGRSVFKSGNG-------------T---------------------SNPVPYSKFKVNKGLRHRFRI 247 (613)
Q Consensus 202 ~~~~~~~~~~~lING~~~~~~~~~-------------~---------------------~~~~~~~~~~v~~G~~~rlRl 247 (613)
.........+.|||..+...... + ........+.++.|+.+.+=|
T Consensus 375 -~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi 453 (574)
T PLN02191 375 -QNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVII 453 (574)
T ss_pred -cceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEE
Confidence 00000112467787764211000 0 000112246777899999999
Q ss_pred EecC------CCCCcEEEEEeceeeEEEEeCCc------------ccceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 248 IGGS------CLACPMLFFVEKHRMNLITVDGT------------PVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 248 iN~~------~~~~~~~~~i~gh~~~via~DG~------------~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
.|.. ...|++| ||||+|.||+...+ +..|..+|++.+.++.-+ -|-+.+++||-
T Consensus 454 ~n~~~~~~~~~~~HP~H--LHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~----vIRf~aDNPG~ 525 (574)
T PLN02191 454 QNANVLKGVVSEIHPWH--LHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWT----AIRFVTDNPGV 525 (574)
T ss_pred ECCCcccCCCCCCCCEE--eCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEE----EEEEECCCCEE
Confidence 9875 3335555 99999999976532 223788999999999988 88899999887
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.44 E-value=9.7e-07 Score=78.61 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=67.1
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
++|.++.|+.|++.|.|. . ..++.+|.||... .... + .| |.. .. +
T Consensus 26 PtI~v~~Gd~v~i~~~N~-l---~~~~siH~HG~~~--------~~~~-----------~--~D--G~~-~~---~---- 70 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNN-L---DEPTSIHWHGLHQ--------PPSP-----------W--MD--GVP-GV---T---- 70 (117)
T ss_dssp EEEEEETTEEEEEEEEEE-S---SSGBSEEEETSBS--------TTGG-----------G--GS--GGT-TT---S----
T ss_pred CEEEEEcCCeeEEEEEec-c---ccccccccceeee--------eeee-----------e--cC--Ccc-cc---c----
Confidence 579999999999999999 3 4689999999652 1110 0 00 110 00 0
Q ss_pred eEEcCCCcEEEEEEEecC-cceeEEeechhhhhhcCceEEEEeccC
Q psy4302 531 TVTIPPNGYTVVRVHFNN-PGIWIMHCHFIFHTETGMNTVFQVGDR 575 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adN-PG~Wl~HCHi~~H~~~GM~~~~~V~~~ 575 (613)
.-.|++|+...-+|.++. +|.|.||||...|...||...|.|.++
T Consensus 71 ~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 71 QCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp GSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 124778999999999988 999999999999988999999999753
No 40
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.36 E-value=2.3e-05 Score=88.21 Aligned_cols=225 Identities=16% Similarity=0.159 Sum_probs=131.1
Q ss_pred CeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc----cccccCCCCCeEEEEEeecCC-C-ceEEeecC
Q psy4302 74 PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL----LTQCPIIPETTYRYKFPAMPY-G-TFFYHSHI 147 (613)
Q Consensus 74 P~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~----vtq~pI~pG~~~~Y~f~~~~~-G-T~wyH~H~ 147 (613)
+.|.|++|++.++|++|........++.-|..+.. ...||.+- +..-.|.|||+++.-+++++. | .||.-+-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtV-Ia~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLL-VEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEE-EEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 58999999999999999988777888888876543 45899642 234569999999999999874 5 79987642
Q ss_pred c------ccccCCceeeEEEeCCCC--CC--CCCC--CCCCCCCc-eEEEEeeeccCCCC--------ccc----CC-CC
Q psy4302 148 G------FQKMDGLEGPLVIRRPKK--AD--PNRD--QYDTDYPS-HTIIITDWLHGMTD--------AKF----PG-NT 201 (613)
Q Consensus 148 ~------~q~~~Gl~G~liV~~~~~--~~--p~~~--~~d~d~~e-~~l~l~d~~~~~~~--------~~~----~~-~~ 201 (613)
. .+...|. +.|-...... .. |... ..|..... ....+. +...... ... .. ..
T Consensus 296 ~~~~~~~~~~~~~~-AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~ 373 (596)
T PLN00044 296 RFVDAAVVDKLTGV-AILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIR-WNVTASGARPNPQGSFHYGDITVTDVY 373 (596)
T ss_pred ccccCccccCccee-EEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhh-hccCCCcCCCCCcccceeeEEeeeeee
Confidence 1 1223332 2333322211 11 1101 11111000 000000 0000000 000 00 00
Q ss_pred --CCC-CCC--CCcceeecCcccccCC-----------CCC---C--C-------CCccceEEEeCCcEEEEEEEecCCC
Q psy4302 202 --YAN-FGT--RTESFLINGRSVFKSG-----------NGT---S--N-------PVPYSKFKVNKGLRHRFRIIGGSCL 253 (613)
Q Consensus 202 --~~~-~~~--~~~~~lING~~~~~~~-----------~~~---~--~-------~~~~~~~~v~~G~~~rlRliN~~~~ 253 (613)
... ... ..-.+.|||..+-... .+. . . ......+.++.|+++.+-|-|....
T Consensus 374 ~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~ 453 (596)
T PLN00044 374 LLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATN 453 (596)
T ss_pred eeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCC
Confidence 000 000 0124677877642110 000 0 0 0023456788899999999997655
Q ss_pred CCcEEEEEeceeeEEEEeCC-----------cccceeeeeEEEEccceeeeecccEEEEccCCcc
Q psy4302 254 ACPMLFFVEKHRMNLITVDG-----------TPVQPQMFDSITIFPGQYTPVNSAIVLNINLDAA 307 (613)
Q Consensus 254 ~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~~~~ 307 (613)
.|++| ||||.|.||+... +++.|..+|++.+.+|.-. -|.|.+|+||.
T Consensus 454 ~HP~H--LHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~----aIRF~aDNPG~ 512 (596)
T PLN00044 454 VQSYH--LDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWT----AILVFLDNAGI 512 (596)
T ss_pred CCCee--EcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeE----EEEEecCCCEE
Confidence 56665 9999999997654 2345889999999999999 99999999998
No 41
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.02 E-value=2.6e-05 Score=67.33 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCcc--ccccCCCCCeEEEEEeecCCCceEEeecCccc
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLL--TQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQ 150 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~v--tq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q 150 (613)
-..|+|++||+|+ ++|.-. .++++..+....... ..+..+.. +.--+.||+++++.|.. +|+|.|+|. .+
T Consensus 16 P~~i~v~~G~~V~--~~N~~~-~~H~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~y~C~--~H 87 (99)
T TIGR02656 16 PAKISIAAGDTVE--WVNNKG-GPHNVVFDEDAVPAG-VKELAKSLSHKDLLNSPGESYEVTFST--PGTYTFYCE--PH 87 (99)
T ss_pred CCEEEECCCCEEE--EEECCC-CCceEEECCCCCccc-hhhhcccccccccccCCCCEEEEEeCC--CEEEEEEcC--Cc
Confidence 3679999999864 567654 577777664321100 00001111 22347899999998885 999999997 78
Q ss_pred ccCCceeeEEEe
Q psy4302 151 KMDGLEGPLVIR 162 (613)
Q Consensus 151 ~~~Gl~G~liV~ 162 (613)
...||.|.|+|+
T Consensus 88 ~~aGM~G~I~V~ 99 (99)
T TIGR02656 88 RGAGMVGKITVE 99 (99)
T ss_pred cccCCEEEEEEC
Confidence 888999999984
No 42
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.84 E-value=4.8e-05 Score=71.65 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=74.5
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
.++.++.|+++.|.|+|. +. ...+.||+.||+|+|++.++. ...|...|
T Consensus 60 ~~~~v~~g~~~rlRliNa-~~--~~~~~~~i~gh~~~Via~DG~----------------------------~v~p~~~~ 108 (159)
T PF00394_consen 60 PVIKVKPGERYRLRLINA-GA--STSFNFSIDGHPMTVIAADGV----------------------------PVEPYKVD 108 (159)
T ss_dssp GEEEEETTTEEEEEEEEE-SS--S-BEEEEETTBCEEEEEETTE----------------------------EEEEEEES
T ss_pred ceEEEcCCcEEEEEEEec-cC--CeeEEEEeeccceeEeeeccc----------------------------cccccccc
Confidence 578999999999999999 53 358999999999999999752 12277899
Q ss_pred eEEcCCCcEEEEEEEecC-cceeEEee----chhhhhhcCceEEEEe
Q psy4302 531 TVTIPPNGYTVVRVHFNN-PGIWIMHC----HFIFHTETGMNTVFQV 572 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adN-PG~Wl~HC----Hi~~H~~~GM~~~~~V 572 (613)
++.|.+|+..-|.++++. +|.|.+++ +...+...|+...+.+
T Consensus 109 ~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~ 155 (159)
T PF00394_consen 109 TLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILR 155 (159)
T ss_dssp BEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEE
T ss_pred eEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEE
Confidence 999999999999999987 99999999 5566777777766554
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.83 E-value=4.2e-05 Score=66.03 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=53.6
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEeCCCccc-CCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCcccc
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQR-HTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQK 151 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~-~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~ 151 (613)
-+.|+|++||+|+ +.|.-. .++++.+=--... +.......+......+.||+++++.|+ .+|+|.|+|- - |.
T Consensus 16 P~~i~V~~G~tV~--~~n~~~-~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~ 88 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNNDS-MPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KPGTYEYYCT-P-HY 88 (99)
T ss_dssp SSEEEEETTEEEE--EEEESS-SSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SSEEEEEEET-T-TG
T ss_pred CCEEEECCCCEEE--EEECCC-CCceEEEecccccccccccccCccccceecCCCCEEEEEeC--CCeEEEEEcC-C-Cc
Confidence 3689999999865 566432 4666665221000 000000000001224789999999888 9999999998 4 88
Q ss_pred cCCceeeEEEe
Q psy4302 152 MDGLEGPLVIR 162 (613)
Q Consensus 152 ~~Gl~G~liV~ 162 (613)
..||.|.|+|+
T Consensus 89 ~~GM~G~i~V~ 99 (99)
T PF00127_consen 89 EAGMVGTIIVE 99 (99)
T ss_dssp GTTSEEEEEEE
T ss_pred ccCCEEEEEEC
Confidence 89999999985
No 44
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.82 E-value=0.00013 Score=67.60 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=59.8
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
+.+.++.|+.|++.+.|. .. +..|.|-||.+.-..- ... .++ |. +..-.
T Consensus 52 P~I~v~~Gd~V~v~v~N~-~~--~~~H~~~I~~~g~~~~------~~p-------------~md--G~-------~~~~~ 100 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINT-DT--DSGHNFDISKRGPPYP------YMP-------------GMD--GL-------GFVAG 100 (148)
T ss_pred CEEEEcCCCEEEEEEEeC-CC--CccccEEeecCCCccc------ccc-------------ccC--CC-------Ccccc
Confidence 468999999999999998 43 3577777774332100 000 000 00 11111
Q ss_pred eEEcCC---C--cEEEEEEEecCcceeEEeechhhhhhcCceEEEEe
Q psy4302 531 TVTIPP---N--GYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572 (613)
Q Consensus 531 Tv~Vp~---~--g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V 572 (613)
.-.+|+ + +|.-+.|+++.+|.+.||||+..|...||...|.|
T Consensus 101 ~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 101 TGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred CcccCCCCCCccceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 112221 2 25688999999999999999999999999999987
No 45
>PRK02710 plastocyanin; Provisional
Probab=97.63 E-value=0.00028 Score=63.08 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=54.5
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCccccc
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKM 152 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~~ 152 (613)
-+.|+|++||+|+ ++|.-. .++++...|.. +.. .+.-.+.||++++|.|.. +|+|-|+|- .+..
T Consensus 46 P~~i~v~~Gd~V~--~~N~~~-~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~--~G~y~y~C~--~H~~ 109 (119)
T PRK02710 46 PSTLTIKAGDTVK--WVNNKL-APHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE--AGTYTYYCE--PHRG 109 (119)
T ss_pred CCEEEEcCCCEEE--EEECCC-CCceEEecCCc--------ccc-ccccccCCCCEEEEEecC--CEEEEEEcC--CCcc
Confidence 4789999999865 667654 57777765421 110 111247899999988886 899999996 6777
Q ss_pred CCceeeEEEe
Q psy4302 153 DGLEGPLVIR 162 (613)
Q Consensus 153 ~Gl~G~liV~ 162 (613)
.||.|.|+|+
T Consensus 110 ~gM~G~I~V~ 119 (119)
T PRK02710 110 AGMVGKITVE 119 (119)
T ss_pred CCcEEEEEEC
Confidence 8999999984
No 46
>KOG1263|consensus
Probab=97.63 E-value=0.0023 Score=71.64 Aligned_cols=238 Identities=18% Similarity=0.114 Sum_probs=128.7
Q ss_pred eEEEECCCCC--C---CeEEEecCCEEEEEEEECCCCCceeEEeC--CCcccCCCCCCCC---Cccc-cccCCCCCeEEE
Q psy4302 63 PILTINRRLP--S---PSIQVCRGDTIVVDVKNKIVDRVVTIHWH--GVYQRHTPHSDGV---PLLT-QCPIIPETTYRY 131 (613)
Q Consensus 63 ~~~~iNg~~P--G---P~i~v~~Gd~v~v~v~N~l~~~~~tiHwH--Gl~~~~~~~~DGv---~~vt-q~pI~pG~~~~Y 131 (613)
...+|||+-. + +++.+++|++.++|+.|..- .+++++. |..+.. -..||. |..+ ---|.|||++++
T Consensus 193 D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~--~~~l~F~I~~H~ltv-Ve~Dg~y~~p~~~~~l~i~~GQ~~~v 269 (563)
T KOG1263|consen 193 DGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGL--NTSLNFSIANHQLTV-VEVDGAYTKPFTTDSLDIHPGQTYSV 269 (563)
T ss_pred CceEECCCCCcccCceeEEEEcCCCEEEEEEEcccc--ccceEEEECCeEEEE-EEecceEEeeeeeceEEEcCCcEEEE
Confidence 4679999852 1 68999999999999999875 3444443 322221 246774 3322 235889999999
Q ss_pred EEeecC-CCceEEeecCccccc-----CCceeeEEEeCCCC---CC-C----CCCCCCCCC-------------------
Q psy4302 132 KFPAMP-YGTFFYHSHIGFQKM-----DGLEGPLVIRRPKK---AD-P----NRDQYDTDY------------------- 178 (613)
Q Consensus 132 ~f~~~~-~GT~wyH~H~~~q~~-----~Gl~G~liV~~~~~---~~-p----~~~~~d~d~------------------- 178 (613)
-.++++ ++.||+=.....+.. .--+|.+....... .. + ....++...
T Consensus 270 Lvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~ 349 (563)
T KOG1263|consen 270 LLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARP 349 (563)
T ss_pred EEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCccc
Confidence 999986 678998887654422 11223333332100 00 0 000001000
Q ss_pred ------CceEEEEeee--ccCCC---CcccCCCCCCCC-------C-CCCcceeecCccc--ccCCC---CCCC--CCcc
Q psy4302 179 ------PSHTIIITDW--LHGMT---DAKFPGNTYANF-------G-TRTESFLINGRSV--FKSGN---GTSN--PVPY 232 (613)
Q Consensus 179 ------~e~~l~l~d~--~~~~~---~~~~~~~~~~~~-------~-~~~~~~lING~~~--~~~~~---~~~~--~~~~ 232 (613)
.+..+.++.- ..... ............ . ....+..+.|... +.+.. ...+ ....
T Consensus 350 ~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t 429 (563)
T KOG1263|consen 350 VPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGT 429 (563)
T ss_pred CCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccc
Confidence 0111111110 00000 000000000000 0 0111223332211 10100 0000 1223
Q ss_pred ceEEEeCCcEEEEEEEecCCCCCcE-EEEEeceeeEEEEeCCc-------------ccceeeeeEEEEccceeeeecccE
Q psy4302 233 SKFKVNKGLRHRFRIIGGSCLACPM-LFFVEKHRMNLITVDGT-------------PVQPQMFDSITIFPGQYTPVNSAI 298 (613)
Q Consensus 233 ~~~~v~~G~~~rlRliN~~~~~~~~-~~~i~gh~~~via~DG~-------------~v~P~~~d~l~l~pgeR~~~~~dv 298 (613)
..+.++-+..+.+=|-|.+...++. -+|||||.|.|++.+.+ ...|..+|+|.|.||.-. -|
T Consensus 430 ~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~----aI 505 (563)
T KOG1263|consen 430 SVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWT----AI 505 (563)
T ss_pred eEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEE----EE
Confidence 5678899999999999998553222 23699999999999432 234778899999999999 99
Q ss_pred EEEccCCcc
Q psy4302 299 VLNINLDAA 307 (613)
Q Consensus 299 ~v~a~~~~~ 307 (613)
.|.|++||-
T Consensus 506 rf~adNPG~ 514 (563)
T KOG1263|consen 506 RFVADNPGV 514 (563)
T ss_pred EEEcCCCcE
Confidence 999999987
No 47
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.61 E-value=0.0001 Score=64.25 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=47.9
Q ss_pred eEEeEEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCC
Q psy4302 60 VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYG 139 (613)
Q Consensus 60 ~~~~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~G 139 (613)
+...+..-|++|=-..|+|+.|+.|+|++.|.-. ..+.+...++... -.|.||++.++.|++.++|
T Consensus 21 ~~v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~-~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~~~~G 86 (104)
T PF13473_consen 21 QTVTITVTDFGFSPSTITVKAGQPVTLTFTNNDS-RPHEFVIPDLGIS-------------KVLPPGETATVTFTPLKPG 86 (104)
T ss_dssp ---------EEEES-EEEEETTCEEEEEEEE-SS-S-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE-S-E
T ss_pred ccccccccCCeEecCEEEEcCCCeEEEEEEECCC-CcEEEEECCCceE-------------EEECCCCEEEEEEcCCCCE
Confidence 3344444566664469999999999999999976 5666655553221 2699999999999999999
Q ss_pred ceEEeecCcccccCCceeeEEE
Q psy4302 140 TFFYHSHIGFQKMDGLEGPLVI 161 (613)
Q Consensus 140 T~wyH~H~~~q~~~Gl~G~liV 161 (613)
+|=|+|-.... |.|.|||
T Consensus 87 ~y~~~C~~~~~----m~G~liV 104 (104)
T PF13473_consen 87 EYEFYCTMHPN----MKGTLIV 104 (104)
T ss_dssp EEEEB-SSS-T----TB-----
T ss_pred EEEEEcCCCCc----ceecccC
Confidence 99999985552 6677765
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.55 E-value=0.00038 Score=77.59 Aligned_cols=96 Identities=22% Similarity=0.298 Sum_probs=67.6
Q ss_pred ecCCCeEEe--EEEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEE
Q psy4302 55 VTADGVERP--ILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYK 132 (613)
Q Consensus 55 ~~~dG~~~~--~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~ 132 (613)
+..||.+.. +.++.=.|--+.|+|++||+|.++|+|.-..+-.+ ||+...+. |+- --+.||++.+..
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----nI~----~dv~PG~t~svt 602 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----GVN----MEVAPQATASVT 602 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----Ccc----EEEcCCceEEEE
Confidence 556675444 34455566455799999999999999953211111 66655431 121 147899999999
Q ss_pred EeecCCCceEEeecC---cccccCCceeeEEEeC
Q psy4302 133 FPAMPYGTFFYHSHI---GFQKMDGLEGPLVIRR 163 (613)
Q Consensus 133 f~~~~~GT~wyH~H~---~~q~~~Gl~G~liV~~ 163 (613)
|+++++|+|||||.. ..| .+|.|.|+|++
T Consensus 603 F~adkPGvy~~~CtefCGa~H--~~M~G~~iVep 634 (635)
T PRK02888 603 FTADKPGVYWYYCTWFCHALH--MEMRGRMLVEP 634 (635)
T ss_pred EEcCCCEEEEEECCcccccCc--ccceEEEEEEe
Confidence 999999999999985 233 38999999975
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.35 E-value=0.0012 Score=54.88 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=48.8
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCccccc
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKM 152 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~~ 152 (613)
-+.|+|++||+|. +.|.-. .+++++...-.-....+. -..+.||+++++.| +++|+|-|||-.-.
T Consensus 10 P~~i~v~~GdtVt--~~N~d~-~~Hnv~~~~g~~~~~~~~-------~~~~~~g~~~~~tf--~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREA-MPHNVHFVAGVLGEAALK-------GPMMKKEQAYSLTF--TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCC-CCccEEecCCCCcccccc-------ccccCCCCEEEEEC--CCCEEEEEEcCCCC---
Confidence 3689999999975 678755 578887754211000011 11356787776655 58999999996422
Q ss_pred CCceeeEEEe
Q psy4302 153 DGLEGPLVIR 162 (613)
Q Consensus 153 ~Gl~G~liV~ 162 (613)
+|.|.++|+
T Consensus 75 -~M~G~v~V~ 83 (83)
T TIGR02657 75 -FMRGKVVVE 83 (83)
T ss_pred -CCeEEEEEC
Confidence 488999885
No 50
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.15 E-value=0.0021 Score=55.37 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=57.9
Q ss_pred eeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCC
Q psy4302 448 ECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPC 527 (613)
Q Consensus 448 ~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~ 527 (613)
.....+.++.|++|+|+ |. + ...|-+.++.-.+.. .. ++ ....+
T Consensus 14 F~P~~i~v~~G~~V~~~--N~-~---~~~H~~~~~~~~~~~--------~~---------~~-------------~~~~~ 57 (99)
T TIGR02656 14 FEPAKISIAAGDTVEWV--NN-K---GGPHNVVFDEDAVPA--------GV---------KE-------------LAKSL 57 (99)
T ss_pred EeCCEEEECCCCEEEEE--EC-C---CCCceEEECCCCCcc--------ch---------hh-------------hcccc
Confidence 34457899999999887 55 2 346777765422110 00 00 01123
Q ss_pred ccceEEcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEec
Q psy4302 528 VKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573 (613)
Q Consensus 528 ~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~ 573 (613)
..+++.+.+|....+.|.. ||.|.|||- .|...||-..+.|.
T Consensus 58 ~~~~~~~~pG~t~~~tF~~--~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 58 SHKDLLNSPGESYEVTFST--PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred cccccccCCCCEEEEEeCC--CEEEEEEcC--CccccCCEEEEEEC
Confidence 3466788888887776665 999999998 89999999999873
No 51
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.12 E-value=0.0042 Score=58.11 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=71.2
Q ss_pred EEECCCCCC-CeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCC-------CCCCCC----cccc-----ccCCCCC
Q psy4302 65 LTINRRLPS-PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTP-------HSDGVP----LLTQ-----CPIIPET 127 (613)
Q Consensus 65 ~~iNg~~PG-P~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~-------~~DGv~----~vtq-----~pI~pG~ 127 (613)
+-+||+-.| |+|.+..|-+|.|+++|.-. .++++-. -+..++ ..||.. +.++ ..|.+|+
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~-~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYES-LPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCC-CCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 567787665 68999999999999999875 5655544 333332 246632 2221 2466888
Q ss_pred eEEEEEeecCCCceEEeecCcccccCCceeeEEEeCC
Q psy4302 128 TYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRP 164 (613)
Q Consensus 128 ~~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~ 164 (613)
+..-.|..-++|+|||-|-.-.|..+||+|-+||-..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 8666677779999999999999999999999999754
No 52
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.12 E-value=0.0028 Score=56.15 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=49.6
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEe-CCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCcccc
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHW-HGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQK 151 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHw-HGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~ 151 (613)
...|+|++||+|+-...|. ++++.+ .+. .-+|.... .-.+|+++++.| +.+|+|-|+|- .|.
T Consensus 14 P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~------~p~g~~~~---~s~~g~~~~~tF--~~~G~Y~Y~C~--pH~ 76 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK----GHNVETIKGM------IPEGAEAF---KSKINEEYTVTV--TEEGVYGVKCT--PHY 76 (116)
T ss_pred CCEEEECCCCEEEEEECCC----CeeEEEccCC------CcCCcccc---cCCCCCEEEEEe--CCCEEEEEEcC--CCc
Confidence 4689999999987555443 455544 221 11222211 123565555555 68999999997 888
Q ss_pred cCCceeeEEEeCC
Q psy4302 152 MDGLEGPLVIRRP 164 (613)
Q Consensus 152 ~~Gl~G~liV~~~ 164 (613)
..||.|.++|.++
T Consensus 77 ~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 77 GMGMVALIQVGDP 89 (116)
T ss_pred cCCCEEEEEECCC
Confidence 9999999999875
No 53
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.08 E-value=0.0092 Score=57.04 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=72.5
Q ss_pred eEEEECCCCCC-CeEEEecCCEEEEEEEECCCCCceeEEe--CCCcc--cCCCCCCCCC----c-----cccccCCCCCe
Q psy4302 63 PILTINRRLPS-PSIQVCRGDTIVVDVKNKIVDRVVTIHW--HGVYQ--RHTPHSDGVP----L-----LTQCPIIPETT 128 (613)
Q Consensus 63 ~~~~iNg~~PG-P~i~v~~Gd~v~v~v~N~l~~~~~tiHw--HGl~~--~~~~~~DGv~----~-----vtq~pI~pG~~ 128 (613)
+.+-|||.--| ++|.+..|-+|.|+++|.-. .++++-. -+-.+ ......||.. + .+-..|.+|++
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~-l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQES-LPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCC-CCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 47788987554 68999999999999999753 4433322 11111 1122356521 1 11236889999
Q ss_pred EEEEEeecCCCceEEeecCcccccCCceeeEEEeCC
Q psy4302 129 YRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRP 164 (613)
Q Consensus 129 ~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~~ 164 (613)
..-.|..-++|+||+-|-...|...||++-|+|...
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 988887778999999999999999999999999864
No 54
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.94 E-value=0.0066 Score=53.69 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCcccc-ccCCCCCeEEEEEeecCCCceEEeecCcccc
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQ-CPIIPETTYRYKFPAMPYGTFFYHSHIGFQK 151 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq-~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~ 151 (613)
-..|+|++||+|+ ++|+....++++..- +|....+. ....+|++|+|.| +++|+|-|+|- .|.
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~----------~~~~f~s~~~~~~~G~t~s~Tf--~~~G~Y~Y~C~--pH~ 104 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSD----------GDGDLDESERVSEEGTTYEHTF--EEPGIYLYVCV--PHE 104 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEEC----------CCCCccccccccCCCCEEEEEe--cCCcEEEEEcc--CCC
Confidence 4679999999987 665443346666542 11111111 1357899888888 48999999996 667
Q ss_pred cCCceeeEEEe
Q psy4302 152 MDGLEGPLVIR 162 (613)
Q Consensus 152 ~~Gl~G~liV~ 162 (613)
..||.|.|+|+
T Consensus 105 ~~gM~G~I~V~ 115 (115)
T TIGR03102 105 ALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEEC
Confidence 77999999984
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=96.69 E-value=0.0095 Score=53.45 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=52.1
Q ss_pred CC-eEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCcccc
Q psy4302 73 SP-SIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQK 151 (613)
Q Consensus 73 GP-~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~ 151 (613)
.| .|+|.+||+|+ +.|.-. ..++++.-+... + +|.-. ....+|++|++.|. .+|+|-|.|- .|+
T Consensus 52 ~PA~v~v~pGDTVt--w~~~d~-~~Hnv~~~~~~~---~--~g~~~---~~~~~~~s~~~Tfe--~~G~Y~Y~C~--PH~ 116 (128)
T COG3794 52 EPAEVTVKPGDTVT--WVNTDS-VGHNVTAVGGMD---P--EGSGT---LKAGINESFTHTFE--TPGEYTYYCT--PHP 116 (128)
T ss_pred cCcEEEECCCCEEE--EEECCC-CCceEEEeCCCC---c--ccccc---cccCCCcceEEEec--ccceEEEEec--cCC
Confidence 45 79999999965 888765 477777665431 1 23221 12334465555554 5999999994 678
Q ss_pred cCCceeeEEEeC
Q psy4302 152 MDGLEGPLVIRR 163 (613)
Q Consensus 152 ~~Gl~G~liV~~ 163 (613)
.+||.|.++|.+
T Consensus 117 ~~gM~G~IvV~~ 128 (128)
T COG3794 117 GMGMKGKIVVGE 128 (128)
T ss_pred CCCcEEEEEeCC
Confidence 889999999964
No 56
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.42 E-value=0.013 Score=53.08 Aligned_cols=59 Identities=8% Similarity=0.202 Sum_probs=46.9
Q ss_pred EEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccce
Q psy4302 452 IIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDT 531 (613)
Q Consensus 452 ~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kDT 531 (613)
.++++.|+.|+|.+.|. + +.+|.|-++++.+ .
T Consensus 62 ~I~VkaGD~Vtl~vtN~-d---~~~H~f~i~~~gi--------------------------------------------s 93 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENK-S---PISEGFSIDAYGI--------------------------------------------S 93 (135)
T ss_pred EEEECCCCEEEEEEEeC-C---CCccceEECCCCc--------------------------------------------c
Confidence 58999999999999998 3 3577766665421 2
Q ss_pred EEcCCCcEEEEEEEecCcceeEEeech
Q psy4302 532 VTIPPNGYTVVRVHFNNPGIWIMHCHF 558 (613)
Q Consensus 532 v~Vp~~g~~vIrf~adNPG~Wl~HCHi 558 (613)
..|++|....++|.++-||.|.|||-+
T Consensus 94 ~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 94 EVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred eEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 356778899999999999999999964
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=95.05 E-value=0.26 Score=42.26 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=33.5
Q ss_pred ceEEcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEec
Q psy4302 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573 (613)
Q Consensus 530 DTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~ 573 (613)
.+..+.+|....+.|. .||.|.|+|- - |...||-..+.|.
T Consensus 60 ~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 60 SSPLLAPGETYSVTFT--KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEBSTTEEEEEEEE--SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred cceecCCCCEEEEEeC--CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 5667777877677766 9999999999 4 9999999999873
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.70 E-value=0.12 Score=58.03 Aligned_cols=78 Identities=14% Similarity=0.316 Sum_probs=54.9
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
..++++.|+.|.+.|.|. ....+..|.|-+-++..
T Consensus 555 ~~i~Vk~GDeVt~~lTN~-d~~~DViHGF~Ip~~nI-------------------------------------------- 589 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNL-DKVEDLTHGFAIPNYGV-------------------------------------------- 589 (635)
T ss_pred ceEEecCCCEEEEEEEeC-CcccccccceeecccCc--------------------------------------------
Confidence 457788999999999986 33335677666644321
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeechhhhh-hcCceEEEEec
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVG 573 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~-~~GM~~~~~V~ 573 (613)
-+.+.||....+.|+++.||.|.+||....|. ..+|...+.|.
T Consensus 590 ~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 590 NMEVAPQATASVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred cEEEcCCceEEEEEEcCCCEEEEEECCcccccCcccceEEEEEE
Confidence 12344678889999999999999999874322 13788888774
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.31 E-value=0.17 Score=43.75 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=40.0
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
..++++.|+.|.+++.|. +. ..|-|.+-+. ..+
T Consensus 35 ~~i~v~~G~~v~l~~~N~-~~---~~h~~~i~~~-------------------------------------------~~~ 67 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNN-DS---RPHEFVIPDL-------------------------------------------GIS 67 (104)
T ss_dssp -EEEEETTCEEEEEEEE--SS---S-EEEEEGGG-------------------------------------------TEE
T ss_pred CEEEEcCCCeEEEEEEEC-CC---CcEEEEECCC-------------------------------------------ceE
Confidence 478999999999999999 42 3344443331 111
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeechhhh
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFH 561 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H 561 (613)
..|++|+...+.|.++.||.|-|+|-+-.+
T Consensus 68 -~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 68 -KVLPPGETATVTFTPLKPGEYEFYCTMHPN 97 (104)
T ss_dssp -EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred -EEECCCCEEEEEEcCCCCEEEEEEcCCCCc
Confidence 467778889999999999999999995443
No 60
>PRK02710 plastocyanin; Provisional
Probab=93.92 E-value=0.34 Score=43.21 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=29.1
Q ss_pred EcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEec
Q psy4302 533 TIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573 (613)
Q Consensus 533 ~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~ 573 (613)
.+.+|....+.|.. ||.+.|+|= .|...||-..+.|.
T Consensus 83 ~~~pg~t~~~tF~~--~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 83 AFAPGESWEETFSE--AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred ccCCCCEEEEEecC--CEEEEEEcC--CCccCCcEEEEEEC
Confidence 35566665666654 999999997 89999999999873
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=92.67 E-value=0.97 Score=40.09 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=27.9
Q ss_pred EEEEecCcceeEEeechhhhhhcCceEEEEeccC
Q psy4302 542 VRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDR 575 (613)
Q Consensus 542 Irf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~~ 575 (613)
+.+.++.||.+-|+|= .|...||-..+.|+++
T Consensus 58 ~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 58 YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 4455578999999998 9999999999999974
No 62
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.96 E-value=1.7 Score=38.86 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecC
Q psy4302 73 SPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHI 147 (613)
Q Consensus 73 GP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~ 147 (613)
.+.|.+..|++|++++.+..- -++....++.. +.-+.||......|+++.+|+|++.|.-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~-------------k~d~~PG~~~~~~~~~~~~G~y~~~C~e 104 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--IHSFWIPELGI-------------KMDAIPGRTNSVTFTPDKPGTYYGQCAE 104 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTE-------------EEEEBTTCEEEEEEEESSSEEEEEEE-S
T ss_pred cceecccccceEeEEEEcCCc--cccccccccCc-------------ccccccccceeeeeeeccCCcEEEcCcc
Confidence 468999999999999999653 43433333321 2246799999999999999999999973
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=88.13 E-value=2 Score=39.64 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=42.7
Q ss_pred ccceEEcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEec
Q psy4302 528 VKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573 (613)
Q Consensus 528 ~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~ 573 (613)
-..++.+-||-...+-+.+.++|.+-|-|=|-+|-+.||-..|.|.
T Consensus 112 ~~~~v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 112 DPNTVTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CcceeEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 4568999999999999999999999999999999999999999884
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=83.95 E-value=3.9 Score=37.83 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=63.5
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCccc-----------CCCCCCCCCccccccCCCCCeEEEEEeecCC
Q psy4302 70 RLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQR-----------HTPHSDGVPLLTQCPIIPETTYRYKFPAMPY 138 (613)
Q Consensus 70 ~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~-----------~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~ 138 (613)
.|++-.+++..|.+++..+.|... ..|=-.+.++ ..+-|++-- ..---+.||++-...|...++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~e----l~hef~~~~~~~~~~~~~~~~~~~Dme~d~-~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGE----LKHEFTMDAPDKNLEHVTHMILADDMEHDD-PNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCccc----ceEEEeccCccccchhHHHhhhCCccccCC-cceeEeCCCCcEEEEEEecCC
Confidence 367788999999999999988653 1121111110 111233211 111258999999999999999
Q ss_pred CceEEeecCcccccCCceeeEEEe
Q psy4302 139 GTFFYHSHIGFQKMDGLEGPLVIR 162 (613)
Q Consensus 139 GT~wyH~H~~~q~~~Gl~G~liV~ 162 (613)
|.|-+-|-...++..||.|-|.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999885
No 65
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=82.01 E-value=10 Score=31.23 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEEEecCcceeEEeechhhhhhcCceEEEEe
Q psy4302 541 VVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572 (613)
Q Consensus 541 vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V 572 (613)
..+|.++.||.|.|||=+ |- +|-..+.|
T Consensus 55 ~~~~tf~~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 55 AYSLTFTEAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEEECCCCEEEEEEcCC--CC--CCeEEEEE
Confidence 445677899999999975 54 48887776
No 66
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=81.98 E-value=5.9 Score=35.05 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=27.0
Q ss_pred CCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEec
Q psy4302 536 PNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573 (613)
Q Consensus 536 ~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~ 573 (613)
++... .+.++.||.+.|+|= .|...||-..+.|+
T Consensus 82 ~G~t~--s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 82 EGTTY--EHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCCEE--EEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 45544 444578999999998 89999999999884
No 67
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=80.79 E-value=9.2 Score=34.17 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.3
Q ss_pred cCCCCCeEEEEEeec--CCCc-eEEeecCcccccCCceeeEEE
Q psy4302 122 PIIPETTYRYKFPAM--PYGT-FFYHSHIGFQKMDGLEGPLVI 161 (613)
Q Consensus 122 pI~pG~~~~Y~f~~~--~~GT-~wyH~H~~~q~~~Gl~G~liV 161 (613)
-|.||++-+..|+++ ++|+ |-|-|-.-.|.. .|.|.|.+
T Consensus 84 liggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~l 125 (125)
T TIGR02695 84 VIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVKL 125 (125)
T ss_pred ccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEeC
Confidence 488999999999986 5886 999999877776 58888753
No 68
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=80.67 E-value=13 Score=39.80 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=55.6
Q ss_pred EEEC-CCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCC-ccccccCCCCCeEEEEEeecCCCceE
Q psy4302 65 LTIN-RRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP-LLTQCPIIPETTYRYKFPAMPYGTFF 142 (613)
Q Consensus 65 ~~iN-g~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~-~vtq~pI~pG~~~~Y~f~~~~~GT~w 142 (613)
++|+ +++--..+.|..|. +++.|+|... .++..-. .+|+- ..-...|.||.+.++.+++ .+|||-
T Consensus 34 Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~-~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~ 100 (375)
T PRK10378 34 VTVNDKQCEPMTLTVNAGK-TQFIIQNHSQ-KALEWEI----------LKGVMVVEERENIAPGFSQKMTANL-QPGEYD 100 (375)
T ss_pred EEEECCccccCceeeCCCC-EEEEEEeCCC-CcceEEe----------eccccccccccccCCCCceEEEEec-CCceEE
Confidence 4444 46656689999996 9999999875 3422111 02210 0012369999999887776 799999
Q ss_pred EeecCcccccCCceeeEEEeCC
Q psy4302 143 YHSHIGFQKMDGLEGPLVIRRP 164 (613)
Q Consensus 143 yH~H~~~q~~~Gl~G~liV~~~ 164 (613)
|+| +++ ..+.|.|+|.++
T Consensus 101 ~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 101 MTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred eec--CcC--CCCCceEEEeCC
Confidence 999 543 234899999865
No 69
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=79.92 E-value=6.3 Score=38.48 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=55.0
Q ss_pred CeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecC--cccc
Q psy4302 74 PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHI--GFQK 151 (613)
Q Consensus 74 P~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~--~~q~ 151 (613)
..|.+..|+.|++++++..- + ||...+. . |+ |.-+-||..-+..|+++++|+|...|.- |..-
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-----~--Hsf~ip~---~-~~----k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-----I--HSFWVPE---L-GG----KIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-----h--hcccccc---c-Cc----eEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc
Confidence 58999999999999998542 1 6665532 1 11 2346789999999999999999999973 3322
Q ss_pred cCCceeeEEEeCC
Q psy4302 152 MDGLEGPLVIRRP 164 (613)
Q Consensus 152 ~~Gl~G~liV~~~ 164 (613)
..|.+-++|.++
T Consensus 182 -~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 -SLMLFKVVVVER 193 (201)
T ss_pred -cCCeEEEEEECH
Confidence 458888888765
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=78.94 E-value=19 Score=32.11 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=49.9
Q ss_pred eeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCc
Q psy4302 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528 (613)
Q Consensus 449 ~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~ 528 (613)
..+.+.+|.|+.|.+.+.+. +..|.|.+-+....+
T Consensus 44 ~~~~l~lp~g~~v~~~ltS~-----DViHsf~ip~~~~k~---------------------------------------- 78 (120)
T PF00116_consen 44 TDNELVLPAGQPVRFHLTSE-----DVIHSFWIPELGIKM---------------------------------------- 78 (120)
T ss_dssp BSSEEEEETTSEEEEEEEES-----SS-EEEEETTCTEEE----------------------------------------
T ss_pred ccceecccccceEeEEEEcC-----CccccccccccCccc----------------------------------------
Confidence 44679999999999999987 456666664432211
Q ss_pred cceEEcCCCcEEEEEEEecCcceeEEeechhhhhhc-CceEEEEe
Q psy4302 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTET-GMNTVFQV 572 (613)
Q Consensus 529 kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~-GM~~~~~V 572 (613)
.+.||....+.|.++.||.+-..|...-...- -|-..+.|
T Consensus 79 ----d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 79 ----DAIPGRTNSVTFTPDKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp ----EEBTTCEEEEEEEESSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ----ccccccceeeeeeeccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 22347778999999999999999987543322 35444443
No 71
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=78.06 E-value=6.3 Score=39.80 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=56.4
Q ss_pred CeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecC-ccccc
Q psy4302 74 PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHI-GFQKM 152 (613)
Q Consensus 74 P~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~-~~q~~ 152 (613)
..|.+..|.+|++.++-..- - ||...+.. -.|--.-||...++.++++++|+|.-+|+- -...-
T Consensus 137 n~l~lPv~~~V~f~ltS~DV--i-----HsF~IP~l--------~~k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADV--I-----HSFWIPQL--------GGKIDAIPGMTTELWLTANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEechh--c-----eeEEecCC--------CceeeecCCceEEEEEecCCCeEEEEEcHhhcCCCc
Confidence 88999999999999987632 3 44443321 112246788999999999999999999983 23334
Q ss_pred CCceeeEEEeCCC
Q psy4302 153 DGLEGPLVIRRPK 165 (613)
Q Consensus 153 ~Gl~G~liV~~~~ 165 (613)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 4688999998763
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=78.04 E-value=7.6 Score=37.92 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=53.1
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
+.+.+|.|+.|++.+.+. +..|. |+|-+.+. ..|
T Consensus 117 ~~l~vp~g~~v~~~~ts~-----DV~Hs-------f~ip~~~~----------------------------------k~d 150 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK-----DVIHS-------FWVPELGG----------------------------------KID 150 (201)
T ss_pred CEEEEEcCCEEEEEEEeC-----chhhc-------ccccccCc----------------------------------eEE
Confidence 468999999999999877 34444 44422211 122
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeech---hhhhhcCceEEEEeccCCC
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHF---IFHTETGMNTVFQVGDRKD 577 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi---~~H~~~GM~~~~~V~~~~~ 577 (613)
+-||-...+.|.++.||.+...|-- ..| ..|...+.|..+++
T Consensus 151 ---a~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 151 ---AIPGQYNALWFNADEPGVYYGYCAELCGAGH--SLMLFKVVVVEREE 195 (201)
T ss_pred ---ecCCcEEEEEEEeCCCEEEEEEehhhCCcCc--cCCeEEEEEECHHH
Confidence 2247788999999999999999987 445 56888777765443
No 73
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=69.20 E-value=40 Score=32.63 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=59.1
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCC-CCCCCCCCcc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLA-TKIRPQPCVK 529 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~p~~k 529 (613)
..+.+|.|-.|.+.+.|. +. +. |.|-|+..+. +..... .+ ..| |.+ .+--..+.-=
T Consensus 86 m~i~VPAGw~V~i~f~N~-~~---l~-------Hnl~iv~~~~-~~p~~~-----~i----~~D--gkIl~~~G~s~~~~ 142 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQ-ES---LP-------HNLVIVQNDT-PTPNNP-----PI----SSD--GKILLYVGASPGNY 142 (196)
T ss_pred EEEEEcCCCEEEEEEEcC-CC---CC-------eeEEEEeCCC-CCCCcc-----cc----CCC--CceeeeccCCCCcc
Confidence 468999999999999999 43 34 6677774433 111100 00 001 111 0000001000
Q ss_pred ceEEcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEecc
Q psy4302 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574 (613)
Q Consensus 530 DTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~ 574 (613)
..--|+.|.....-|..-.||.+.+=|=+.-|.+.||-..|.|..
T Consensus 143 ~~~GI~~G~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 143 TSNGISSGQSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred ccCCccCCceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 011233455444455566799999999999999999999999874
No 74
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=66.80 E-value=6.6 Score=42.35 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=49.2
Q ss_pred eEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecCc-ccccC
Q psy4302 75 SIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIG-FQKMD 153 (613)
Q Consensus 75 ~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~-~q~~~ 153 (613)
++.|++||.|.+.++|--.- .-=.||.-.+. -|+.+ -+.|-++-.|.|.++.+|-+||-|--. .-.-+
T Consensus 559 ef~Vkq~DEVt~l~tnld~V---ed~thgfv~p~----~~v~~----~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDEV---EDLTHGFVIPN----YGVNM----EVKPQRTASVTFYADKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEecCcEEEEEeccccee---ccccceeeecc----CceEE----EEccCCceEEEEEccCCeeeehhhhhHHHHHHH
Confidence 57788888888887776431 11124543321 12222 377888889999999999999987532 22333
Q ss_pred CceeeEEEe
Q psy4302 154 GLEGPLVIR 162 (613)
Q Consensus 154 Gl~G~liV~ 162 (613)
-|.|-++|+
T Consensus 628 em~~rmlve 636 (637)
T COG4263 628 EMAGRMLVE 636 (637)
T ss_pred hhccceeec
Confidence 466777775
No 75
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=57.41 E-value=28 Score=30.55 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=29.9
Q ss_pred EEEEEEEecCCCCCcEEEEEece-eeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccC
Q psy4302 242 RHRFRIIGGSCLACPMLFFVEKH-RMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINL 304 (613)
Q Consensus 242 ~~rlRliN~~~~~~~~~~~i~gh-~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~ 304 (613)
.|+++|+|.+...+.+.++++|. .+++.. ....+.|.||+.. ++-|....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~----~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETR----EVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EE----EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEE----EEEEEEEE
Confidence 58999999999887888887764 233311 2468899999999 55554443
No 76
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=55.43 E-value=1.5e+02 Score=28.40 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=59.2
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
..+-+|.|-.|.+.|.|. . ..+ |.+-|+.-+..-+... .. ..|.+.+. +--..++.-.
T Consensus 85 mtIyiPaGw~V~V~f~N~-e---~~p-------Hnl~iv~n~t~~P~~~------~~----s~dgkil~-~vG~~~s~~~ 142 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNY-E---SLP-------HNLKLLPNSTQTPRGP------IW----AHTGKIIN-STGATTSIYY 142 (195)
T ss_pred eEEEEeCCCEEEEEEEcC-C---CCC-------ccEEEecCCCCCCCcc------cc----ccCceeEe-ecccccCccc
Confidence 568999999999999999 3 234 4555554433111100 00 00100000 0001111111
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeechhhhhhcCceEEEEecc
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~ 574 (613)
.=-+..|....+-|.+--||.+-+=|-+.-|.+.||-..+.|..
T Consensus 143 ~NGi~~Gqs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 143 GNGISSGHSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cccccccceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 11233455556666667899999999999999999999998864
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=53.83 E-value=48 Score=33.52 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=51.8
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
+.+.+|.|+.|++.+... +.-| .|+|-+-+. .+|
T Consensus 137 n~l~lPv~~~V~f~ltS~-----DViH-------sF~IP~l~~----------------------------------k~d 170 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-----DVIH-------SFWIPQLGG----------------------------------KID 170 (247)
T ss_pred ceEEEeCCCeEEEEEEec-----hhce-------eEEecCCCc----------------------------------eee
Confidence 568999999999999766 3444 455533322 112
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeechhhhhh-cCceEEEEeccCCC
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTE-TGMNTVFQVGDRKD 577 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~-~GM~~~~~V~~~~~ 577 (613)
+-||-.....|.++.||.+..+|+...=.. ..|-..+.|..+++
T Consensus 171 ---~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 171 ---AIPGMTTELWLTANKPGTYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred ---ecCCceEEEEEecCCCeEEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 122566788899999999999999765332 34666666655443
No 78
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=49.34 E-value=97 Score=26.76 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=43.1
Q ss_pred EEEEEECCCCCceeEEeCCCcccCCCCCC-CCCccccccCCCCCeEEEEEeecCCCceEEeecCcccccCCceeeEEEeC
Q psy4302 85 VVDVKNKIVDRVVTIHWHGVYQRHTPHSD-GVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRR 163 (613)
Q Consensus 85 ~v~v~N~l~~~~~tiHwHGl~~~~~~~~D-Gv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~~~q~~~Gl~G~liV~~ 163 (613)
.|+|+|.|. ....|..|=-.- --| |+ -.+.||+.+...|...--|+-.|.|+... .......-+.|..
T Consensus 2 ~V~I~N~L~-~~~~L~vhC~S~----d~Dlg~-----~~l~~g~~~~~~F~~~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLG-PGKILTVHCKSK----DDDLGW-----HVLKPGQSYSFSFRDNFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCC-CCCeEEEEeeCC----CccCCC-----EECCCCCEEEEEEecCcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 488999995 233344443211 112 22 25899999999998776788889999776 2212355666654
Q ss_pred C
Q psy4302 164 P 164 (613)
Q Consensus 164 ~ 164 (613)
.
T Consensus 71 ~ 71 (110)
T PF05938_consen 71 S 71 (110)
T ss_pred c
Confidence 3
No 79
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=47.64 E-value=40 Score=33.61 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=51.0
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
+.+.+|.|+.|++.+... +.. |+|+|-+.+. .+|
T Consensus 139 nel~lP~g~pV~~~ltS~-----DVi-------HSF~VP~l~~----------------------------------K~D 172 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN-----SVM-------NSFFIPQLGS----------------------------------QIY 172 (226)
T ss_pred ceEEEECCCEEEEEEEEC-----chh-------hhhhhhhcCC----------------------------------eee
Confidence 357999999999999876 334 4555543322 344
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeechhhhh-hcCceEEEEeccCC
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGDRK 576 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~-~~GM~~~~~V~~~~ 576 (613)
.+ ||-...+.|.++.||.+.-.|--.-=. ...|...+.|..++
T Consensus 173 ai---PG~~n~~~~~~~~~G~y~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 173 AM---AGMQTKLHLIANEPGVYDGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred cC---CCceEEEEEEeCCCEEEEEEchhhcCcCccCCeEEEEEECHH
Confidence 33 366778899999999999999653321 13466666665433
No 80
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.09 E-value=1.2e+02 Score=29.42 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=51.0
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
+.+.+|.|+.|++.+... +.-|.|.+-+.. ..+|
T Consensus 116 ~~l~lp~g~~v~~~ltS~-----DViHsf~vp~l~-----------------------------------------~k~d 149 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS-----DVIHSFSVPDLN-----------------------------------------LKMD 149 (194)
T ss_pred ceEEEeCCCEEEeeeecC-----ccccceeccccC-----------------------------------------ceee
Confidence 468899999999999765 456555543311 1233
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeechhhhh-hcCceEEEEeccC
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGDR 575 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~-~~GM~~~~~V~~~ 575 (613)
.+ ||-...+.|.++-||.+..-|.-.-=. ...|-..+.|..+
T Consensus 150 ~~---PG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 150 AI---PGRINHLFFCPDRHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred cC---CCceEEEEEEcCCCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 22 366778999999999999999865422 2346666666543
No 81
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=40.56 E-value=1.5e+02 Score=24.49 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=36.5
Q ss_pred CCCeEEEec---CCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEee
Q psy4302 72 PSPSIQVCR---GDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA 135 (613)
Q Consensus 72 PGP~i~v~~---Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~ 135 (613)
+.|.+.++. ...|.|++.|.-. .+..+....... ..+. ..+-.|+||++.+..|..
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~-~~~~~~v~~~~y-----~~~~--~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGS-AAVTFTVYDNAY-----GGGG--PWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCC-CcEEEEEEeCCc-----CCCC--CEEEEECCCCEEEEEEee
Confidence 355555542 3589999999875 566666554211 1121 234569999999999987
No 82
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=40.52 E-value=95 Score=25.59 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=32.7
Q ss_pred CeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCc---cccccCCCCCeEEEEEeec--C--CCceEE
Q psy4302 74 PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL---LTQCPIIPETTYRYKFPAM--P--YGTFFY 143 (613)
Q Consensus 74 P~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~---vtq~pI~pG~~~~Y~f~~~--~--~GT~wy 143 (613)
=+|+..-|.+..+.|.|.-. ...| -|++|..+ +.+-.|+||++.+|++..+ . +|+|..
T Consensus 16 v~l~f~sgq~~D~~v~d~~g----~~vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEG----KEVW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEESSS--EEEEEE-TT------EEE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCC----CEEE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 36777778888888876543 1122 37888653 2345799999999999886 3 688753
No 83
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=38.12 E-value=1.5e+02 Score=25.81 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=10.9
Q ss_pred EEEEEecCCCCCcEEEEEec
Q psy4302 244 RFRIIGGSCLACPMLFFVEK 263 (613)
Q Consensus 244 rlRliN~~~~~~~~~~~i~g 263 (613)
++|++|++...-.+.+.++|
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg 22 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDG 22 (122)
T ss_pred EEEEEEcCCCCccEEEEECC
Confidence 46666666543355555544
No 84
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=38.01 E-value=1.8e+02 Score=26.33 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=23.7
Q ss_pred EEecCcceeEEeechhhhhhcCceEEEEecc
Q psy4302 544 VHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574 (613)
Q Consensus 544 f~adNPG~Wl~HCHi~~H~~~GM~~~~~V~~ 574 (613)
+.++-||.+.|.|- .|..+||-..+.|++
T Consensus 100 ~Tfe~~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 100 HTFETPGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred EEecccceEEEEec--cCCCCCcEEEEEeCC
Confidence 34455999999995 699999999998863
No 85
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=35.94 E-value=1.8e+02 Score=27.41 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=50.1
Q ss_pred eeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCC
Q psy4302 448 ECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPC 527 (613)
Q Consensus 448 ~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~ 527 (613)
...+.+.+|.|..|.+.+... +..|.|.+-. .+.
T Consensus 70 ~vDn~LvLP~g~~Vr~~lTS~-----DVIHSF~VP~-------lgv---------------------------------- 103 (162)
T PTZ00047 70 EVDKRLTLPTRTHIRFLITAT-----DVIHSWSVPS-------LGI---------------------------------- 103 (162)
T ss_pred EecCCEEEeCCCEEEEEEEeC-----ccceeeeccc-------cCc----------------------------------
Confidence 455678999999999999765 3455544432 221
Q ss_pred ccceEEcCCCcEEEEEEEecCcceeEEeechhhhhh-cCceEEEEecc
Q psy4302 528 VKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTE-TGMNTVFQVGD 574 (613)
Q Consensus 528 ~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~-~GM~~~~~V~~ 574 (613)
..|.+ ||-...+.|.++.||.+...|.-.-=.. ..|-..+.|..
T Consensus 104 K~Dav---PGr~n~l~~~~~~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 104 KADAI---PGRLHKINTFILREGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred eeecc---CCceEEEEEecCCCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 22222 3556678889999999999998654222 23656666543
No 86
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=34.67 E-value=87 Score=28.23 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=33.1
Q ss_pred EEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccc----eeeeeEEEEccceee
Q psy4302 242 RHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQ----PQMFDSITIFPGQYT 292 (613)
Q Consensus 242 ~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~----P~~~d~l~l~pgeR~ 292 (613)
.|++||.|.+.. +.. |-...+.+...||...+ .+....=.|.|||.+
T Consensus 32 ~Y~ItI~N~~~~--~vQ--L~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F 82 (127)
T PRK05461 32 AYTITIENLGRV--PVQ--LLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESF 82 (127)
T ss_pred EEEEEEEECCCC--CEE--EEeeeEEEEECCCCEEEEECCceecCCceECCCCCe
Confidence 589999998854 344 77888999888886432 223334468888887
No 87
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.95 E-value=1.5e+02 Score=29.51 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=52.0
Q ss_pred eeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCc
Q psy4302 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528 (613)
Q Consensus 449 ~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~ 528 (613)
+.+.+.+|.|+.|.+.+.+. +..|.|.+-+ .+. .
T Consensus 138 ~~n~l~lP~~~~v~~~~ts~-----DViHsf~ip~-------~~~----------------------------------k 171 (228)
T MTH00140 138 VDNRLVLPYSVDTRVLVTSA-----DVIHSWTVPS-------LGV----------------------------------K 171 (228)
T ss_pred cCCeEEEeeCcEEEEEEEcC-----ccccceeccc-------cCc----------------------------------e
Confidence 44678999999999999877 3455444322 211 1
Q ss_pred cceEEcCCCcEEEEEEEecCcceeEEeechhhhh-hcCceEEEEeccC
Q psy4302 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGDR 575 (613)
Q Consensus 529 kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~-~~GM~~~~~V~~~ 575 (613)
.| .-||....+.|.++.||.+...|.-.-.. ...|-..++|..+
T Consensus 172 ~d---~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 172 VD---AIPGRLNQLSFEPKRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred eE---CCCCcceeEEEEeCCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 22 12366778889999999999999876544 2346666666543
No 88
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=31.94 E-value=1.1e+02 Score=25.88 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=29.2
Q ss_pred EEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccc----eeeeeEEEEccceee
Q psy4302 242 RHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQ----PQMFDSITIFPGQYT 292 (613)
Q Consensus 242 ~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~----P~~~d~l~l~pgeR~ 292 (613)
.|++||-|.+.. + +.|-...+.|...||...+ -+....=.|.|||.+
T Consensus 15 ~Y~I~I~N~~~~--~--vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f 65 (90)
T PF04379_consen 15 AYRIRIENHSDE--S--VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESF 65 (90)
T ss_dssp EEEEEEEE-SSS-----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEE
T ss_pred EEEEEEEECCCC--C--EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcE
Confidence 589999999965 3 4477888888888885332 122234578999988
No 89
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.75 E-value=3.1e+02 Score=26.61 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=48.7
Q ss_pred eEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccccccCCCCCeEEEEEeecCCCceEEeecC--ccccc
Q psy4302 75 SIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHI--GFQKM 152 (613)
Q Consensus 75 ~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vtq~pI~pG~~~~Y~f~~~~~GT~wyH~H~--~~q~~ 152 (613)
.+.+..|..|++++.-..- - |+...+.. ++.+ -.-||..-...|+++++|+|.-.|.- |..-
T Consensus 117 ~l~lp~g~~v~~~ltS~DV--i-----Hsf~vp~l-------~~k~-d~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H- 180 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSDV--I-----HSFSVPDL-------NLKM-DAIPGRINHLFFCPDRHGVFVGYCSELCGVGH- 180 (194)
T ss_pred eEEEeCCCEEEeeeecCcc--c-----cceecccc-------Ccee-ecCCCceEEEEEEcCCCEEEEEEeehhhCcCc-
Confidence 4888899999999876542 2 44433221 1111 24488888899999999999998873 3222
Q ss_pred CCceeeEEEeCC
Q psy4302 153 DGLEGPLVIRRP 164 (613)
Q Consensus 153 ~Gl~G~liV~~~ 164 (613)
..|.+.+.|.++
T Consensus 181 ~~M~~~v~v~~~ 192 (194)
T MTH00047 181 SYMPIVIEVVDV 192 (194)
T ss_pred ccCcEEEEEEcC
Confidence 246677777665
No 90
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.35 E-value=1.6e+02 Score=29.45 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=51.2
Q ss_pred eeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCc
Q psy4302 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528 (613)
Q Consensus 449 ~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~ 528 (613)
..+.+.+|.|+.|++.+... +.. |+|+|-+.|. .
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~-----DVi-------Hsf~ip~~~~----------------------------------k 171 (230)
T MTH00129 138 ADHRMVVPVESPIRVLVSAE-----DVL-------HSWAVPALGV----------------------------------K 171 (230)
T ss_pred ccceEEEecCcEEEEEEEeC-----ccc-------cceeccccCC----------------------------------c
Confidence 34578999999999999866 233 5566644332 2
Q ss_pred cceEEcCCCcEEEEEEEecCcceeEEeechhhhh-hcCceEEEEecc
Q psy4302 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGD 574 (613)
Q Consensus 529 kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~-~~GM~~~~~V~~ 574 (613)
.|. + ||....+.|.++.||.+...|.-.--. ...|-..++|..
T Consensus 172 ~da--~-PG~~~~~~~~~~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 172 MDA--V-PGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred ccc--C-CCceEEEEEEeCCceEEEEEChhhccccccCCcEEEEEEC
Confidence 222 2 366778889999999999999874432 234666666543
No 91
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=28.19 E-value=1e+02 Score=30.36 Aligned_cols=77 Identities=8% Similarity=-0.031 Sum_probs=50.9
Q ss_pred EEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCccc
Q psy4302 451 EIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKD 530 (613)
Q Consensus 451 ~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~kD 530 (613)
+.+.+|.|+.|++.+... +.- |+|+|=+.+ ..+|
T Consensus 130 n~l~iP~g~~v~~~ltS~-----DVi-------Hsf~vP~l~----------------------------------~k~d 163 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA-----DTM-------TSFWIPQLG----------------------------------GQKY 163 (217)
T ss_pred CcEEEECCCEEEEEEECC-----chh-------hhhhchhhC----------------------------------ceee
Confidence 358999999999999766 334 456552221 2445
Q ss_pred eEEcCCCcEEEEEEEecCcceeEEeechhhhh-hcCceEEEEeccCC
Q psy4302 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGDRK 576 (613)
Q Consensus 531 Tv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~-~~GM~~~~~V~~~~ 576 (613)
.+ ||-...+.|.++-||.+--.|=-.-=. ..-|...+.|..++
T Consensus 164 ai---PG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~v~~~~ 207 (217)
T TIGR01432 164 AM---TGMTMNWYLQADQVGTYRGRNANFNGEGFADQTFDVNAVSEK 207 (217)
T ss_pred cC---CCceEEEEEEeCCCEEEEEEehhhcCccccCCeEEEEEeCHH
Confidence 43 377778999999999999999643211 12466666665443
No 92
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=27.94 E-value=41 Score=28.90 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=27.0
Q ss_pred eEEEECCCCCCCeEEEecCCEEEEEEEECCC
Q psy4302 63 PILTINRRLPSPSIQVCRGDTIVVDVKNKIV 93 (613)
Q Consensus 63 ~~~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~ 93 (613)
.-+.|||+.-=|.=.|+.||.|+|++.|.+-
T Consensus 34 GrV~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 34 GRVKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred CeEEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 3467899988899999999999999999874
No 93
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=27.68 E-value=1.8e+02 Score=29.05 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=50.6
Q ss_pred eeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCc
Q psy4302 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528 (613)
Q Consensus 449 ~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~ 528 (613)
..+.+.+|.|+.|++.+... +.. |.|+|-+.|. .
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~-----DVi-------Hsf~ip~lg~----------------------------------k 171 (227)
T MTH00098 138 VDNRVVLPMEMPIRMLISSE-----DVL-------HSWAVPSLGL----------------------------------K 171 (227)
T ss_pred ccceEEecCCCEEEEEEEEC-----ccc-------cccccccccc----------------------------------c
Confidence 34678999999999999876 234 4455532221 2
Q ss_pred cceEEcCCCcEEEEEEEecCcceeEEeechhhhhh-cCceEEEEecc
Q psy4302 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTE-TGMNTVFQVGD 574 (613)
Q Consensus 529 kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~-~GM~~~~~V~~ 574 (613)
.|.+ ||....+.|.++.||.+..-|.-.-... .-|-..++|..
T Consensus 172 ~dai---PG~~~~~~~~~~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 172 TDAI---PGRLNQTTLMSTRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred eecC---CCceEEEEEecCCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 2322 3667788899999999999998754332 34556666543
No 94
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.37 E-value=2.3e+02 Score=22.67 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=20.7
Q ss_pred EeCCcE--EEEEEEecCCCCCcEEEEEeceeeEEEEeCCccc--ceeeeeEEEEccceeeee
Q psy4302 237 VNKGLR--HRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV--QPQMFDSITIFPGQYTPV 294 (613)
Q Consensus 237 v~~G~~--~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v--~P~~~d~l~l~pgeR~~~ 294 (613)
|.+|+. +.+.+-|.+... +.+..+.+-.-+|-.+ .|..+. .|.|||...+
T Consensus 1 v~~G~~~~~~~tv~N~g~~~------~~~v~~~l~~P~GW~~~~~~~~~~--~l~pG~s~~~ 54 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAP------LTNVSLSLSLPEGWTVSASPASVP--SLPPGESVTV 54 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-------BSS-EEEEE--TTSE---EEEEE----B-TTSEEEE
T ss_pred CCCCCEEEEEEEEEECCCCc------eeeEEEEEeCCCCccccCCccccc--cCCCCCEEEE
Confidence 345664 477788988542 1222333333444332 233333 8899998833
No 95
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.52 E-value=1.9e+02 Score=28.81 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=49.9
Q ss_pred eeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCc
Q psy4302 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528 (613)
Q Consensus 449 ~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~ 528 (613)
..+.+.+|.|+.|++.+... +.- |.|+|-+.|. .
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~-----DVi-------Hsf~iP~lg~----------------------------------k 171 (230)
T MTH00185 138 TDHRMVVPMESPIRVLITAE-----DVL-------HSWTVPALGV----------------------------------K 171 (230)
T ss_pred cCCeEEEecCCEEEEEEEcC-----ccc-------ccccccccCc----------------------------------e
Confidence 44678999999999999766 334 4454433321 2
Q ss_pred cceEEcCCCcEEEEEEEecCcceeEEeechhhhhhc-CceEEEEecc
Q psy4302 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTET-GMNTVFQVGD 574 (613)
Q Consensus 529 kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~-GM~~~~~V~~ 574 (613)
.|.+ ||....+.|.++.||.+.--|.-.-...- -|-..+++-.
T Consensus 172 ~dai---PG~~~~~~~~~~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 172 MDAV---PGRLNQATFIISRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred eEec---CCceEEEEEEeCCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 3322 36667788899999999999987544322 3555555543
No 96
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=26.45 E-value=1.5e+02 Score=32.66 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=34.5
Q ss_pred EEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEccC
Q psy4302 242 RHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNINL 304 (613)
Q Consensus 242 ~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~~ 304 (613)
.|+++|.|.+...+.+.++++|.. |.-++- ..+.+.|.|||+. ++.|....
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~----~~~v~v~~ 399 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKV----KLPVFLRT 399 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEE----EEEEEEEe
Confidence 689999999988777887776643 211110 1127999999999 66555443
No 97
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=25.98 E-value=2.7e+02 Score=24.71 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=17.3
Q ss_pred CCCCCccccccCCCCCeEEEEEee
Q psy4302 112 SDGVPLLTQCPIIPETTYRYKFPA 135 (613)
Q Consensus 112 ~DGv~~vtq~pI~pG~~~~Y~f~~ 135 (613)
.||=-. ..|||..|+.++|.+..
T Consensus 65 ~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 65 TDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCccc-EeCCCcCCcEEEEEEee
Confidence 455322 37999999999999875
No 98
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=24.85 E-value=2.6e+02 Score=22.96 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=27.7
Q ss_pred EEEEEEEecCCCCCcEEEEE-ecee--eEEEEeCCcccce--------eeeeEEEEccceeeeecccEEEEccC
Q psy4302 242 RHRFRIIGGSCLACPMLFFV-EKHR--MNLITVDGTPVQP--------QMFDSITIFPGQYTPVNSAIVLNINL 304 (613)
Q Consensus 242 ~~rlRliN~~~~~~~~~~~i-~gh~--~~via~DG~~v~P--------~~~d~l~l~pgeR~~~~~dv~v~a~~ 304 (613)
.+.|++.|.+.. ++.|.. .|++ |.|...+|..+-- .......|.|||.. .+-...+.
T Consensus 3 ~~~l~v~N~s~~--~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~----~~~~~~~~ 70 (82)
T PF12690_consen 3 EFTLTVTNNSDE--PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESL----TYEETWDL 70 (82)
T ss_dssp EEEEEEEE-SSS---EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EE----EEEEEESS
T ss_pred EEEEEEEeCCCC--eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEE----EEEEEECC
Confidence 356778888865 455544 3444 4444456665521 24457889999999 66666554
No 99
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=24.40 E-value=1.8e+02 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=30.5
Q ss_pred ceEEEeCCcEEEEEEEecCCCCCcEEEEEeceeeEEEEeCCcccc
Q psy4302 233 SKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQ 277 (613)
Q Consensus 233 ~~~~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~ 277 (613)
..+-+++| +|.||+|.-+-....=-+-+-+--+.|+|+|+++.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeE
Confidence 56778997 799999987732211122233556899999999875
No 100
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.17 E-value=2.1e+02 Score=28.75 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=51.1
Q ss_pred eeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCc
Q psy4302 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528 (613)
Q Consensus 449 ~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~ 528 (613)
..+.+.+|.|+.|++.+... +.-|.|.+-. .| ..
T Consensus 149 ~~n~lvlP~~~~v~~~~tS~-----DViHsf~iP~-------lg----------------------------------vK 182 (240)
T MTH00023 149 VDNRLVVPINTHVRILVTGA-----DVLHSFAVPS-------LG----------------------------------LK 182 (240)
T ss_pred cCceEEEecCCEEEEEEEcC-----Ccccceeecc-------cC----------------------------------ce
Confidence 34678999999999999766 4555544432 22 13
Q ss_pred cceEEcCCCcEEEEEEEecCcceeEEeechhhhhh-cCceEEEEeccC
Q psy4302 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTE-TGMNTVFQVGDR 575 (613)
Q Consensus 529 kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~-~GM~~~~~V~~~ 575 (613)
+|.+ | |-...+.|.++.||.+.-.|.-.--.. .-|-..++|.++
T Consensus 183 ~Dai--P-G~~n~~~~~~~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 183 IDAV--P-GRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred eecC--C-CcceeEEEEcCCCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 3322 2 555678899999999999998665442 335566665443
No 101
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=23.46 E-value=3e+02 Score=22.94 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=30.6
Q ss_pred EEeCCcEE--EEEEEecCCCCCcEEEEEeceeeEEEEeCCcccceeeeeEEEEccceeeeecccEEEEcc
Q psy4302 236 KVNKGLRH--RFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVLNIN 303 (613)
Q Consensus 236 ~v~~G~~~--rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~~~~~dv~v~a~ 303 (613)
.+..|++| .++|.|.|... .+|++.-.. .....+. ..-..-.|.||+.. ++-|.+.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p--~~f~v~~~~-----~~~~~~~-v~~~~g~l~PG~~~----~~~V~~~ 72 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP--ARFRVRQPE-----SLSSFFS-VEPPSGFLAPGESV----ELEVTFS 72 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC--EEEEEEeCC-----cCCCCEE-EECCCCEECCCCEE----EEEEEEE
Confidence 45667776 68899999764 555543211 0011111 01123459999998 5555544
No 102
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=23.39 E-value=2.7e+02 Score=24.71 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=15.2
Q ss_pred ccccCCCCCeEEEEEee
Q psy4302 119 TQCPIIPETTYRYKFPA 135 (613)
Q Consensus 119 tq~pI~pG~~~~Y~f~~ 135 (613)
+.|||.+|+.++|.+..
T Consensus 75 ~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 75 TSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCCCcCCcEEEEEEee
Confidence 57999999999999875
No 103
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=23.35 E-value=1.4e+02 Score=27.09 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=41.7
Q ss_pred ceEEEEeeeccCCCCcccCCCCCCCCCCCCcceeecCcccccCCCCCCCCCccceEEEeCCcEE--EEEEEecCCCCCcE
Q psy4302 180 SHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRH--RFRIIGGSCLACPM 257 (613)
Q Consensus 180 e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~v~~G~~~--rlRliN~~~~~~~~ 257 (613)
++.|...-|+-+.... -.++.||+..+... ........|.++.|-+| +.+|.|+.. |.-
T Consensus 39 ~V~VtwN~WsG~~Gd~--------------~kly~dG~~V~tG~---~~~~~~a~~~~~~gG~y~~~VeLCN~~G--CS~ 99 (133)
T PF08329_consen 39 DVSVTWNVWSGTNGDT--------------AKLYFDGVLVWTGP---SPQQKSATFTVTKGGRYQMQVELCNADG--CST 99 (133)
T ss_dssp EEEEEEE-SSS---SE--------------EEEEETTEEEEEEE-----SEEEEEEEE-S-EEEEEEEEEEETTE--EEE
T ss_pred EEEEEEEEecCCCCCE--------------EEEEECCEEEEeCC---CccCceEEEEecCCCEEEEEEEEECCCC--ccc
Confidence 4566666676443322 35677887754211 11222358899999887 566899986 433
Q ss_pred EEEEeceeeEEEEeCCcccceee
Q psy4302 258 LFFVEKHRMNLITVDGTPVQPQM 280 (613)
Q Consensus 258 ~~~i~gh~~~via~DG~~v~P~~ 280 (613)
. +.+...|-.+||.-+.|..
T Consensus 100 S---~~~~V~VaDTDGsHl~pL~ 119 (133)
T PF08329_consen 100 S---APVEVVVADTDGSHLAPLP 119 (133)
T ss_dssp ------EEEEEE-TTSTTS----
T ss_pred C---CCEEEEEeCCCcccccccc
Confidence 3 5677888899999888753
No 104
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=23.34 E-value=85 Score=27.81 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=27.0
Q ss_pred EEEEECCCC--CceeEEeCCCcccC---CCCCCCCCccccccCCCCCeEEEEE
Q psy4302 86 VDVKNKIVD--RVVTIHWHGVYQRH---TPHSDGVPLLTQCPIIPETTYRYKF 133 (613)
Q Consensus 86 v~v~N~l~~--~~~tiHwHGl~~~~---~~~~DGv~~vtq~pI~pG~~~~Y~f 133 (613)
|++.|.... +-.+=|||=-...+ .-.-+||-+ -|.-|.||++|+|.=
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtS 85 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTS 85 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcC
Confidence 667776642 23466887221111 011244433 388899999999954
No 105
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.87 E-value=2.4e+02 Score=28.16 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=50.6
Q ss_pred eeeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCC
Q psy4302 448 ECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPC 527 (613)
Q Consensus 448 ~~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~ 527 (613)
+..+.+.+|.|+.+++.+... +.-|.|.+-. .| .
T Consensus 137 ~vdn~lvlP~~~~v~~~~tS~-----DViHsf~iP~-------lg----------------------------------~ 170 (229)
T MTH00038 137 EVDNRLVLPYQTPIRVLVSSA-----DVLHSWAVPS-------LG----------------------------------V 170 (229)
T ss_pred ccCceEEEecCeEEEEEEEEC-----Cccccccccc-------cC----------------------------------c
Confidence 344678999999999999866 3455444322 21 1
Q ss_pred ccceEEcCCCcEEEEEEEecCcceeEEeechhhhhhcC-ceEEEEecc
Q psy4302 528 VKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETG-MNTVFQVGD 574 (613)
Q Consensus 528 ~kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~~G-M~~~~~V~~ 574 (613)
..|.+ ||-...+.|.++.||.+..-|--.--..-. |-..++|..
T Consensus 171 k~dai---PG~~~~~~~~~~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 171 KMDAV---PGRLNQTTFFISRTGLFYGQCSEICGANHSFMPIVIESVP 215 (229)
T ss_pred eeecC---CCceEEEEEEcCCCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 33322 366678889999999999999765544333 445555443
No 106
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=22.74 E-value=4.9e+02 Score=22.91 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=41.1
Q ss_pred eEEEeCCcEEEEEEEecCCCCCcEEEEEeceeeEEEEeCCccc-------ceeeeeEEEEccceeeeecccEEEEccC
Q psy4302 234 KFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-------QPQMFDSITIFPGQYTPVNSAIVLNINL 304 (613)
Q Consensus 234 ~~~v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v-------~P~~~d~l~l~pgeR~~~~~dv~v~a~~ 304 (613)
.|.+.....|+|++-..+ ...|.|+|..+ |+.++..- .+....++.|..|++| .|-|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d----~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y----~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD----GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKY----PIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS----EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EE----EEEEEEEE
T ss_pred EEecccCceEEEEEEecc----cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeE----EEEEEEEE
Confidence 456666678999998444 46777888865 56665433 3566778999999999 77776544
No 107
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=22.52 E-value=1.3e+02 Score=24.78 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=34.5
Q ss_pred EEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCCCCCccc-------cc--cCCCCCeEEEEEeecCCCce
Q psy4302 76 IQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLT-------QC--PIIPETTYRYKFPAMPYGTF 141 (613)
Q Consensus 76 i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~DGv~~vt-------q~--pI~pG~~~~Y~f~~~~~GT~ 141 (613)
|.++.||++.|.|.-+-. ....-+.... .+++..+. .. .+..+....+.|++..+|+.
T Consensus 1 I~v~~g~~~~I~L~~nps-tGY~W~~~~~-------~~~l~l~~~~~~~~~~~~~~vG~~g~~~f~f~a~~~G~~ 67 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPS-TGYSWSLSSD-------SDGLQLVSEEYIPDNSPSGLVGAPGTRTFTFKALKPGTT 67 (92)
T ss_dssp -EEETTSEEEEEEEEBCC-GTBEEEECTS-------TTTEEEEEEEEEESSTSSTSSTSSEEEEEEEEESSSEEE
T ss_pred CeecCCCEEEEEECCCCC-CCeEEEEecC-------CCeEEEcCCcEEeCCCCcCCCCCCcEEEEEEEEecCeeE
Confidence 689999999999987754 3444433330 11111100 00 34556677888998888865
No 108
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.93 E-value=2.8e+02 Score=27.55 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=51.0
Q ss_pred eeEEEEecCCCEEEEEEEeCCCCCCCCCCCeeeecCcEEEEEeccCCCcccccccccchHHhhhccCCCCCCCCCCCCCc
Q psy4302 449 CVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528 (613)
Q Consensus 449 ~~~~~~v~~g~~ve~vl~N~~~~~~~~~HPfHLHG~~F~Vl~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~ 528 (613)
..+.+.+|.|..|++.+... +.- |+|+|-+.|. .
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~-----DVi-------Hsf~vP~lg~----------------------------------K 171 (227)
T MTH00117 138 VDHRMVIPMESPIRILITAE-----DVL-------HSWAVPSLGV----------------------------------K 171 (227)
T ss_pred ccceEEEecCceEEEEEEec-----chh-------hcccccccCc----------------------------------e
Confidence 44678999999999999866 334 4555533321 3
Q ss_pred cceEEcCCCcEEEEEEEecCcceeEEeechhhhhh-cCceEEEEecc
Q psy4302 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTE-TGMNTVFQVGD 574 (613)
Q Consensus 529 kDTv~Vp~~g~~vIrf~adNPG~Wl~HCHi~~H~~-~GM~~~~~V~~ 574 (613)
.|.+ ||....+.|.++.||.+.--|--.-... .-|-..++|..
T Consensus 172 ~Dav---PG~~n~~~~~~~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 172 TDAV---PGRLNQTSFITTRPGVFYGQCSEICGANHSFMPIVVESVP 215 (227)
T ss_pred eEec---CCceEEEEEEEcccceEEEEeccccccCccCCeEEEEEcC
Confidence 3322 3667788999999999999997654332 34555555543
No 109
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=21.26 E-value=2.3e+02 Score=30.17 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred EEECCCCCCCeEEEecCCEEEEEEEECCCCCceeEEeCCCcccCCCCCC-----CCCccccccCCCCCeEEEEEeecCC-
Q psy4302 65 LTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSD-----GVPLLTQCPIIPETTYRYKFPAMPY- 138 (613)
Q Consensus 65 ~~iNg~~PGP~i~v~~Gd~v~v~v~N~l~~~~~tiHwHGl~~~~~~~~D-----Gv~~vtq~pI~pG~~~~Y~f~~~~~- 138 (613)
++=||.-| |++.+=.+-.||+.|.+. +......+-| |-..--+.||+||++.+.+.++..+
T Consensus 290 VTN~g~~~---vrlgEF~TA~vRFlN~~~----------v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA~ 356 (399)
T TIGR03079 290 ITNNGDQV---ISIGEFTTAGIRFMNANG----------VRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDAL 356 (399)
T ss_pred EEcCCCCc---eEEEeEeecceEeeCccc----------ccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehhh
Q ss_pred ------------------CceEEeecCcccccCCceeeEE
Q psy4302 139 ------------------GTFFYHSHIGFQKMDGLEGPLV 160 (613)
Q Consensus 139 ------------------GT~wyH~H~~~q~~~Gl~G~li 160 (613)
|..++-+-.|.-...-+.|++|
T Consensus 357 WEveRL~~L~~DpdSrfgGLLff~d~~G~R~~~~I~gpvI 396 (399)
T TIGR03079 357 WEVQRLMALLGDPESRFGGLLMFWDPEGNRIINSIAGPVI 396 (399)
T ss_pred hHHHHHHHHhcCcccccceEEEEEcCCCCEEehhccCccc
No 110
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.17 E-value=1.3e+02 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred cccCCCCCeEEEEEee----cCCCceEEee
Q psy4302 120 QCPIIPETTYRYKFPA----MPYGTFFYHS 145 (613)
Q Consensus 120 q~pI~pG~~~~Y~f~~----~~~GT~wyH~ 145 (613)
..||+||++++..++. ...|+|.|++
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v 125 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNV 125 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEE
No 111
>KOG4078|consensus
Probab=20.00 E-value=61 Score=29.41 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=27.8
Q ss_pred EeCCcEEEEEEEecCCCCCcEEEEEeceeeEEEEeCCccc
Q psy4302 237 VNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV 276 (613)
Q Consensus 237 v~~G~~~rlRliN~~~~~~~~~~~i~gh~~~via~DG~~v 276 (613)
.+.|.|+||||+..--.. .|-=..|.++++++|...+
T Consensus 120 Y~~GaRVrlRl~DlELs~---rFLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELSE---RFLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHhh---hhhcCCccceEEecceeee
Confidence 467999999999987543 2223568899999988765
Done!