RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4302
(613 letters)
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 157 bits (397), Expect = 5e-41
Identities = 137/551 (24%), Positives = 228/551 (41%), Gaps = 76/551 (13%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL 117
D E ++T+N + P P+I GDTIVV + NK+ + IHWHG+ Q+ +P +DG
Sbjct: 38 DCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG 97
Query: 118 LTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177
+TQC I P T+ YKF GT FYH H G Q+ GL G L++ K R +YD +
Sbjct: 98 VTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIV-DVAKGPKERLRYDGE 156
Query: 178 YPSHTIIITDWLHGMTDAKFPG--NTYANFGTRTESFLINGRSVFKSG------NGTSNP 229
+ ++++DW H ++ G + + +S LINGR F NGT P
Sbjct: 157 F---NLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELP 213
Query: 230 VPYSK---------FKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQM 280
+ K +V +R R+ + LA L V+ H++ ++ DG + P
Sbjct: 214 MCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNL-AVQGHKLVVVEADGNYITPFT 272
Query: 281 FDSITIFPGQYTPVNSAIVLNINLDAAH-----MGSRRDRLNILRLRKSLNALDS--SDC 333
D I I+ G+ + +++L + D + +G R + N + LN + + S
Sbjct: 273 TDDIDIYSGE----SYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKL 328
Query: 334 SDTNPNVC--WNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRW 391
+ P V W+ ++K P +Y + + N ++ +
Sbjct: 329 PSSPPPVTPRWDDFERSKNFSKKIFSAMGSPS-----PPKKYR--KRLILLNTQNLIDGY 381
Query: 392 FQSSPNVIKTHVTNNISLGILPFPI-LSQDLPIPKE--------MECPKDRSVCGKSAEK 442
+ + N + LG + + + L + P M P + +
Sbjct: 382 TKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIY 441
Query: 443 GGKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRA 502
V++I N + ++ + +HP HLHG D +++ G
Sbjct: 442 VFPFNVTVDVIIQNANVLKGVV---------SEIHPWHLHGHDFWVLGYG---------- 482
Query: 503 FVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT 562
GK + G D T P +++T + P G+T +R +NPG+W HCH H
Sbjct: 483 -DGKF-----KPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHL 536
Query: 563 ETGMNTVFQVG 573
GM VF G
Sbjct: 537 HMGMGVVFAEG 547
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 152 bits (385), Expect = 1e-39
Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 21/249 (8%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL 117
D E+ ++ IN + P P+I+ GDTIVV++ NK+ V IHWHG+ Q TP +DG
Sbjct: 16 DCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG 75
Query: 118 LTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177
+TQC I P T+ Y F GT+FYH H G Q+ GL G L++ + YD +
Sbjct: 76 VTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIV-DVPDGEKEPFHYDGE 134
Query: 178 YPSHTIIITDWLHGMTDAKFPGNTYANFGTRTE--SFLINGRSVF---KSGNGTSNPVPY 232
++++DW H + G + E S LINGR F + +S +P
Sbjct: 135 ---FNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQ 191
Query: 233 SKFKVNK-----------GLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMF 281
K N+ G +R RI + LA + F +E H++ ++ DG V+P
Sbjct: 192 CNLKGNEQCAPQILHVEPGKTYRLRIASTTALAA-LNFAIEGHKLTVVEADGNYVEPFTV 250
Query: 282 DSITIFPGQ 290
I I+ G+
Sbjct: 251 KDIDIYSGE 259
Score = 60.5 bits (147), Expect = 1e-09
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP HLHG D +++ G GK R G D + P +++TV I P
Sbjct: 444 HPWHLHGHDFWVLGYG-----------EGKF-----RPGVDEKSYNLKNPPLRNTVVIFP 487
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573
G+T +R +NPG+W HCH H GM VF G
Sbjct: 488 YGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG 524
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 141 bits (357), Expect = 9e-36
Identities = 88/260 (33%), Positives = 129/260 (49%), Gaps = 35/260 (13%)
Query: 48 DCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQR 107
DCFKK ++TIN R P P+I +GDT++V++KN ++ V IHWHG+ Q
Sbjct: 39 DCFKK----------LVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQI 88
Query: 108 HTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPK-K 166
TP DG +TQCPI+P T+ Y+F GT+ YH+H G Q+ GL G + + P+ K
Sbjct: 89 GTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGK 148
Query: 167 ADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTE--SFLINGRSVFKSGN 224
++P YD +II+TDW H T + G + F E S LI G+ +
Sbjct: 149 SEPFSYDYD-----RSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSL 203
Query: 225 GTSNPV-------------PYSKFKVNKGLRHRFRIIGGSCLACPMLFF-VEKHRMNLIT 270
+S + PY V G +R RI S A L F +E H M ++
Sbjct: 204 VSSPYLKAGVCNATNPECSPYV-LTVVPGKTYRLRI--SSLTALSALSFQIEGHNMTVVE 260
Query: 271 VDGTPVQPQMFDSITIFPGQ 290
DG V+P + ++ I+ G+
Sbjct: 261 ADGHYVEPFVVKNLFIYSGE 280
Score = 57.6 bits (139), Expect = 1e-08
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
HP HLHG D +++ G GK D P +K+TV + P
Sbjct: 467 HPWHLHGHDFWVLGYG-----------EGKFN-----MSSDPKKYNLVDPIMKNTVPVHP 510
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573
G+T +R +NPG+W HCH H GM VF+ G
Sbjct: 511 YGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG 547
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 139 bits (352), Expect = 1e-35
Identities = 112/531 (21%), Positives = 165/531 (31%), Gaps = 132/531 (24%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS 112
A G + N LP P+I+V +GDT+ +D+ N++ ++HWHG+
Sbjct: 43 QLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRL-LVDTSVHWHGLPVP--GEM 99
Query: 113 DGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRD 172
DGVP LTQ P P T Y F GT++YH H Q DGL G L+I D
Sbjct: 100 DGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGVD 159
Query: 173 QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPY 232
I+ DWL + A G ++ L+NG
Sbjct: 160 DE------PVILQDDWLDEDGTDLYQEGP-AMGGFPGDTLLVNG-------------AIL 199
Query: 233 SKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYT 292
V G+ R R++ L + +I VDG P+ P D + + PG+
Sbjct: 200 PFKAVPGGVV-RLRLLNAGNARTYHLALGG-GPLTVIAVDGGPLPPVSVDELYLAPGERY 257
Query: 293 PVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNPNVCWNHVNSLTPAT 352
V + +N + A + + + + DT LTP+
Sbjct: 258 EV--LVDMN-DGGAVTLTALGEDMP-----------------DTLK-GFRAPNPILTPSY 296
Query: 353 EKAT---------VLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHV 403
+ P LV + E RD+ F H+
Sbjct: 297 PVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDF--------------------HL 336
Query: 404 TNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEI 463
I + I + + I K G E
Sbjct: 337 IGGIGGY--VWAINGKAFDDNRVT-----------------------LIAKAGT---RER 368
Query: 464 IFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIR 523
+ P HP HLHG ++
Sbjct: 369 WVLTNDTPMP---HPFHLHGHFFQVLSGD-----------APAPGAAPGW---------- 404
Query: 524 PQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574
KDTV + P +VR + PG W+ HCH + H + GM F V
Sbjct: 405 -----KDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 129 bits (327), Expect = 1e-35
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDG 114
VT G R ++ +N + P P+I+V GDT+VV+V N + D TIHWHG+ Q TP +DG
Sbjct: 7 VTPLGGTRQVIGVNGQFPGPTIRVREGDTVVVNVTNNL-DEPTTIHWHGLRQPGTPWADG 65
Query: 115 VPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKM-DGLEGPLVIRRPK 165
VP +TQCPI P ++ Y+F GT++YHSH + + GL G ++I P
Sbjct: 66 VPGVTQCPIPPGESFTYRFTVKQQAGTYWYHSHTSWLQQAAGLYGAIIIEDPA 118
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 114 bits (288), Expect = 5e-27
Identities = 73/238 (30%), Positives = 111/238 (46%), Gaps = 14/238 (5%)
Query: 60 VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLT 119
R + +N P P I++ G T + V N I D VT+HWHG+ QR P SDG PL +
Sbjct: 25 SSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLAS 84
Query: 120 QCPIIPETTYRYKFPAMP--YGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177
Q PI P + Y+ P G++FYHSH+GFQ + GPL++ + +YD +
Sbjct: 85 QWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTA-FGPLIVEDCEPPPY---KYDDE 140
Query: 178 YPSHTIIITDWLHGMTDAKFPGNTYANF--GTRTESFLINGRSVFKSGNGTSNPVPYSK- 234
++++D+ + G F TE+ L+NG+S KS NP
Sbjct: 141 ---RILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCML 197
Query: 235 --FKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
V G +R R IG + L+ L + + +I DG+ +P D + + GQ
Sbjct: 198 PVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQ 255
Score = 58.3 bits (141), Expect = 7e-09
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 26/113 (23%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTV---- 532
HP H HG Y I G + A KL+ P ++DT
Sbjct: 442 HPFHAHGRHFYDIGGG--DGEYNATANEAKLENY--------------TPVLRDTTMLYR 485
Query: 533 ----TIP--PNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFV 579
+P P G+ R+ NPG+W+MHCH + H GM TV+ GD +D V
Sbjct: 486 YAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAEDIV 538
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 113 bits (285), Expect = 2e-26
Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 32/254 (12%)
Query: 51 KKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTP 110
+ C T + ILT+N + P P++ GDT++V+V N V VTIHWHGV Q
Sbjct: 16 TRLCST-----KSILTVNGKFPGPTLYAREGDTVIVNVTNN-VQYNVTIHWHGVRQLRNG 69
Query: 111 HSDGVPLLTQCPIIPETTYRYKFP-AMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADP 169
+DG +TQCPI P +Y Y F GT ++H+HI + + + G +VI PK P
Sbjct: 70 WADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRAT-VYGAIVI-LPKPGVP 127
Query: 170 NRDQYDTDYPSH--TIIITDWLHGMTDAKFPGNTYANFGTRT-------ESFLINGRSVF 220
Y P II+ +W + +A N +T +++ ING
Sbjct: 128 ----YPFPKPDREVPIILGEWWNADVEA------VINQANQTGGAPNVSDAYTINGHPGP 177
Query: 221 KSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQM 280
+ + K V G + RII + L + F + H + ++ VD T +P
Sbjct: 178 LYNCSSKDTF---KLTVEPGKTYLLRIINAA-LNDELFFAIANHTLTVVEVDATYTKPFK 233
Query: 281 FDSITIFPGQYTPV 294
+I I PGQ T V
Sbjct: 234 TKTIVIGPGQTTNV 247
Score = 76.7 bits (189), Expect = 1e-14
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 451 EIIKVGLNQVAEIIFID--WIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQ 508
+++++ N E++ D +G + HP+HLHG + +++ G G
Sbjct: 415 KVVRLKFNSTVELVLQDTSILGSEN---HPIHLHGYNFFVVGTGF-----------GNFD 460
Query: 509 ERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNT 568
+ D A P ++TV +P G+ +R +NPG+W MHCH HT G+
Sbjct: 461 PK-----KDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKM 515
Query: 569 VFQVGDRKDFVQT----PPEFPTC 588
F V + K Q+ P + P+C
Sbjct: 516 AFLVDNGKGPNQSLLPPPSDLPSC 539
>gnl|CDD|219541 pfam07731, Cu-oxidase_2, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 135
Score = 93.3 bits (232), Expect = 1e-22
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 23/132 (17%)
Query: 443 GGKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRA 502
G E+I + EI+ + HP HLHG ++ +G P
Sbjct: 25 NGPPLGTTEVITLPNGDRVEIVLQNNTMGP----HPFHLHGHSFQVLGRGGGPWTPTATY 80
Query: 503 FVGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT 562
+ R DTV +PP G+ +R +NPG W+ HCH ++H
Sbjct: 81 NLVDPVRR-------------------DTVQVPPGGWVAIRFKADNPGPWLFHCHILWHL 121
Query: 563 ETGMNTVFQVGD 574
+ GM F V
Sbjct: 122 DQGMMGQFVVDP 133
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 98.8 bits (246), Expect = 1e-21
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTP-HSD 113
V G RP +T+N +P P ++ GDT+ + V N + +IHWHG+ P D
Sbjct: 57 VNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTL-PEDTSIHWHGIL---LPFQMD 112
Query: 114 GVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQ 173
GVP ++ I P T+ Y+FP GT++YHSH GFQ+ GL GPL+I P + DP R
Sbjct: 113 GVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLII-DPAEPDPVR-- 169
Query: 174 YDTDYPSHTIIITDW 188
D + H ++++DW
Sbjct: 170 ADRE---HVVLLSDW 181
Score = 45.3 bits (107), Expect = 8e-05
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 34/98 (34%)
Query: 477 HPMHLHG--TDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTI 534
HP+HLHG +++ E ++R K TV +
Sbjct: 521 HPIHLHGMWSEL---------------------------EDGQGEFQVR-----KHTVDV 548
Query: 535 PPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
PP G RV + G W HCH + H E GM V
Sbjct: 549 PPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 89.8 bits (223), Expect = 8e-19
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 39/252 (15%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS 112
G + GV + ++ IN + P P+I + IV++V N + D + W G+ QR
Sbjct: 37 GTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNL-DEPFLLTWSGIQQRKNSWQ 95
Query: 113 DGVPLLTQCPIIPETTYRYKF-PAMPYGTFFYHSHIGFQKMDGLEG------PLVIRRPK 165
DGVP T CPI P T + Y F P G++FY+ G + G G L+I P
Sbjct: 96 DGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVP- 153
Query: 166 KADPNRDQYDTDYPSHTIIITDW-------LHGMTDAKFPGNTYANFGTRTESFLINGRS 218
ADP D +T++I DW L D+ G T R + LING+S
Sbjct: 154 YADPEDD--------YTVLIGDWYTKSHTALKKFLDS---GRTLG----RPDGVLINGKS 198
Query: 219 VFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQP 278
G+G P+ F + G +R+RI L + F ++ H+M L+ ++G+ V
Sbjct: 199 --GKGDGKDEPL----FTMKPGKTYRYRICNVG-LKSSLNFRIQGHKMKLVEMEGSHVLQ 251
Query: 279 QMFDSITIFPGQ 290
+DS+ + GQ
Sbjct: 252 NDYDSLDVHVGQ 263
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 86.2 bits (213), Expect = 1e-17
Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 28/247 (11%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS 112
G ++ GV + ++ IN + P P + V D I++++ NK+ D+ + W+G+ QR
Sbjct: 39 GTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKL-DQPFLLTWNGIKQRKNSWQ 97
Query: 113 DGVPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPL-VIRRPKKADPN 170
DGV L T CPI P + Y YKF GTF Y F K G G + V RP+ P
Sbjct: 98 DGV-LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPF 156
Query: 171 RDQYDTDYPSHTIIITDWL---HGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTS 227
D D+ T+++ DW H + F + LING++
Sbjct: 157 PLP-DGDF---TLLVGDWYKTSHKTLQQRLDSGKVLPF---PDGVLINGQT--------- 200
Query: 228 NPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIF 287
S F ++G + FR I L+ + F ++ H M L+ V+G+ ++DS+ +
Sbjct: 201 ----QSTFSGDQGKTYMFR-ISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVH 255
Query: 288 PGQYTPV 294
GQ V
Sbjct: 256 VGQSVAV 262
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 83.1 bits (205), Expect = 1e-16
Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 29/272 (10%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS 112
G ++ + R + IN + P P I+ D +V++V N + D + W+GV+ R +
Sbjct: 26 GNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDL-DEPFLLSWNGVHMRKNSYQ 84
Query: 113 DGVPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPL-VIRRPKKADPN 170
DGV T CPI P Y Y F G++FY + QK G G L + P+ P
Sbjct: 85 DGV-YGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVP- 142
Query: 171 RDQYDTDYPSHTIIITDWL-HGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNP 229
+ T +I DW T K + + +ING+ V
Sbjct: 143 ---FPEPAGDFTFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVMINGQGV---------- 189
Query: 230 VPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPG 289
V+KG +RFR I L + F + H++ LI V+GT M+ S+ I G
Sbjct: 190 SYVYSITVDKGKTYRFR-ISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVG 248
Query: 290 Q-YT--------PVNSAIVLNINLDAAHMGSR 312
Q Y+ P N +IV++ AA +
Sbjct: 249 QTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVS 280
>gnl|CDD|215896 pfam00394, Cu-oxidase, Multicopper oxidase. Many of the proteins
in this family contain multiple similar copies of this
plastocyanin-like domain.
Length = 146
Score = 70.8 bits (174), Expect = 1e-14
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 180 SHTIIITDWLHGMTDAK-------FPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPY 232
+ I ++DW H DAK G +F ++ LING+ G S
Sbjct: 2 DYVITLSDWYH--KDAKDLEKELLASGKAPTDFPPVPDAVLINGKD------GASLAT-- 51
Query: 233 SKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
V G +R RII + + F +E H+M ++ VDG V P DS+ IFPGQ
Sbjct: 52 --LTVTPGKTYRLRIINVALDD-SLNFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQ 106
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 72.3 bits (177), Expect = 2e-13
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 26/237 (10%)
Query: 59 GVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLL 118
G + ++ IN P P + D I V++ N + + + + W+G+ R DGV
Sbjct: 42 GGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFL-MTWNGLQLRKNSWQDGVRG- 99
Query: 119 TQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177
T CPI+P T + Y+F G++FY + QK G G + I P+ + D +
Sbjct: 100 TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEE 159
Query: 178 YPSHTIIITDWLHG----MTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYS 233
Y I+I DW + M + G++ N + L NGR G
Sbjct: 160 Y---DILIGDWFYADHTVMRASLDNGHSLPN----PDGILFNGR-------GPEETF--- 202
Query: 234 KFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
F G +R RI C + F ++ H M L+ +GT VQ +++ S+ I GQ
Sbjct: 203 -FAFEPGKTYRLRISNVGLKTC-LNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQ 257
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 72.0 bits (176), Expect = 4e-13
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 27/243 (11%)
Query: 60 VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLT 119
++ + IN + P P++ V +VV+V+N + D + + WHGV QR + DGV T
Sbjct: 46 KKQEAIGINGQFPGPALNVTTNWNLVVNVRNAL-DEPLLLTWHGVQQRKSAWQDGV-GGT 103
Query: 120 QCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDY 178
C I + Y+F G+FFY + G G + I NRD +
Sbjct: 104 NCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITIN-------NRDVIPIPF 156
Query: 179 P-----SHTIIITDWL---HGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNP- 229
T+ I DW H + LIN ++ + P
Sbjct: 157 GFPDGGDITLFIADWYARDHRALRRALDAGDLLG---APDGVLINAFGPYQYNDSLVPPG 213
Query: 230 VPYSKFKVNKGLRHRFRI--IGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIF 287
+ Y + V+ G +RFR+ +G +A + F ++ H + L+ +G+ Q + ++ I
Sbjct: 214 ITYERINVDPGKTYRFRVHNVG---VATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIH 270
Query: 288 PGQ 290
GQ
Sbjct: 271 VGQ 273
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 70.8 bits (173), Expect = 9e-13
Identities = 68/242 (28%), Positives = 100/242 (41%), Gaps = 25/242 (10%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS 112
G ++ GV + + IN + P P I D ++++V N + D I W G+ +
Sbjct: 38 GNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHL-DEPFLISWSGIRNWRNSYQ 96
Query: 113 DGVPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPLVIR-RPKKADPN 170
DGV T CPI P Y Y G+F+Y +GF K G G + I RP P
Sbjct: 97 DGV-YGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVP- 154
Query: 171 RDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRT--ESFLINGRSVFKSGNGTSN 228
+ +T++I DW T+ K N G + LINGR SG
Sbjct: 155 ---FPAPADDYTVLIGDWYK--TNHKDLRAQLDNGGKLPLPDGILINGRG---SG----- 201
Query: 229 PVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFP 288
+ + G +R RI L + F ++ H M L+ V+GT F S+ +
Sbjct: 202 ----ATLNIEPGKTYRLRI-SNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHV 256
Query: 289 GQ 290
GQ
Sbjct: 257 GQ 258
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 50.8 bits (122), Expect = 2e-06
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 67 INRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTP-HSDGVPLLTQCPIIP 125
N L P++++ RG + VD+ N++ T+HWHG+ P DG P Q I P
Sbjct: 70 YNGNLLGPAVRLQRGKAVTVDITNQL-PEETTLHWHGLE---VPGEVDGGP---QGIIAP 122
Query: 126 ETTYRYKF-PAMPYGTFFYHSHI----GFQKMDGLEGPLVIRRPK 165
F P T ++H H G Q GL G ++I +
Sbjct: 123 GGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDE 167
Score = 43.9 bits (104), Expect = 2e-04
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 32/102 (31%)
Query: 476 LHPMHLHGTDIYII-EQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTI 534
LHP H+HGT I+ E G P A HRA G KDTV +
Sbjct: 448 LHPFHIHGTQFRILSENGKPPAA--HRA------------G------------WKDTVRV 481
Query: 535 PPNGYTVVRVHFNNPG----IWIMHCHFIFHTETGMNTVFQV 572
G + V V F++ ++ HCH + H +TGM F V
Sbjct: 482 E-GGRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain.
ThrRS belongs to class II aminoacyl-tRNA synthetases
(aaRS). This alignment contains the anticodon binding
domain, which is responsible for specificity in
tRNA-binding, so that the activated amino acid is
transferred to a ribose 3' OH group of the appropriate
tRNA only.
Length = 91
Score = 30.5 bits (70), Expect = 0.54
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 493 IIPVAEDHRAFVGKLQERLAREG 515
+IPV ++H + ++ ++L+ G
Sbjct: 6 VIPVTDEHLDYAKEVAKKLSDAG 28
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 31.5 bits (71), Expect = 1.5
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 234 KFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITI 286
+F+ N+G R R+RI +C V+ H IT+ P +P + +
Sbjct: 77 EFRPNRGERFRYRINATACH-------VDGHDAIQITIRAIPAEPPKLSKLDL 122
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 589
Score = 30.7 bits (70), Expect = 3.0
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 493 IIPVAEDHRAFVGKLQERLAREG 515
+IPVA++H + ++ E+L + G
Sbjct: 492 VIPVADEHLDYAKEVAEKLRKAG 514
>gnl|CDD|178511 PLN02923, PLN02923, xylose isomerase.
Length = 478
Score = 30.2 bits (68), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 142 FYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177
F + + ++K G G L+I PK +P + QYD D
Sbjct: 254 FLEAAVAYKKKIGFNGTLLIE-PKPQEPTKHQYDWD 288
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether. [Protein synthesis,
tRNA aminoacylation].
Length = 563
Score = 29.2 bits (66), Expect = 7.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 493 IIPVAEDHRAFVGKLQERLAREG 515
+IPV E H + K+ ++L + G
Sbjct: 475 VIPVNERHLDYAKKVAQKLKKAG 497
>gnl|CDD|131429 TIGR02376, Cu_nitrite_red, nitrite reductase, copper-containing.
This family consists of copper-type nitrite reductase.
It reduces nitrite to nitric oxide, the first step in
denitrification [Central intermediary metabolism,
Nitrogen metabolism].
Length = 311
Score = 28.6 bits (64), Expect = 9.4
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHGVYQRHTPHSDGVP 116
DGV +T + +P P I+V GD + + + N + + + +H + G
Sbjct: 43 DGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGGA 97
Query: 117 LLTQCPIIPETTYRYKFPAMPYGTFFYH 144
LTQ + P T +F A G F YH
Sbjct: 98 ALTQ--VNPGETATLRFKATRPGAFVYH 123
>gnl|CDD|197291 cd09195, PLDc_mTdp1_2, Catalytic domain, repeat 2, of metazoan
tyrosyl-DNA phosphodiesterase. Catalytic domain, repeat
2, of metazoan tyrosyl-DNA phosphodiesterase (Tdp1, EC
3.1.4.-). Human Tdp1 (hTdp1) acts as an important DNA
repair enzyme with a preference for single-stranded or
blunt-ended duplex oligonucleotides. It can remove
stalled topoisomerase I-DNA complexes by catalyzing the
hydrolysis of a phosphodiester bond between a tyrosine
side chain and a DNA 3'-phosphate. It is therefore a
potential molecular target for new anti-cancer drugs.
hTdp1 has been shown to associate with additional
proteins, such as XRCC1, to form a multi-enzyme complex.
These additional proteins may be involved in recognizing
3'-phoshotyrosyl DNA in vivo. hTdp1 is a monomeric
protein containing two copies of a variant HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue), which consists of the highly conserved
histidine and lysine residues, but lacks the aspartate
residue that is well conserved in other phospholipase D
(PLD, EC 3.1.4.4) enzymes. Like other PLD enzymes, hTdp1
may utilize a common two-step general acid/base
catalytic mechanism, involving a DNA-enzyme intermediate
to cleave phosphodiester bonds. A single active site
involved in phosphatidyl group transfer would be formed
by the two variant HKD motifs from the N- and C-terminal
domains in a pseudodimeric way.
Length = 191
Score = 28.0 bits (63), Expect = 9.7
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 24/93 (25%)
Query: 308 HMGSRRDRLNILRLRKSLNALDSSDCSDTN-PNVC--------------W---NHVNSLT 349
H GS D+ LRLRK L S + P + W + SL
Sbjct: 11 HTGSSLDKWGHLRLRKLLKEHASLPPVAESWPVIAQFSSIGSLGPDPQKWLCSEFLESL- 69
Query: 350 PATEKATVLKAVPDIRLVF-AVDEYHFTRDSLF 381
+ T K+ P ++L++ +V+ R+SL
Sbjct: 70 -SGLGKTSGKSSPPLKLIYPSVENV---RNSLE 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.451
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,831,455
Number of extensions: 3095273
Number of successful extensions: 2312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2269
Number of HSP's successfully gapped: 42
Length of query: 613
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 510
Effective length of database: 6,369,140
Effective search space: 3248261400
Effective search space used: 3248261400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)