RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4302
(613 letters)
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 352 bits (904), Expect = e-114
Identities = 132/581 (22%), Positives = 221/581 (38%), Gaps = 84/581 (14%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDG 114
+ E ++ IN + P P+I+ GD++VV++ NK+ V IHWHG+ QR TP +DG
Sbjct: 15 WAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADG 74
Query: 115 VPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQY 174
++QC I P T+ Y F GTFFYH H+G Q+ GL G L++ P + Y
Sbjct: 75 TASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVD-PPQGKKEPFHY 133
Query: 175 DTDYPSHTIIITDWLHGMTDAKFPG--NTYANFGTRTESFLINGRSVF---KSGNGTSNP 229
D + ++++DW H + G + + ++ L+NGR F + SN
Sbjct: 134 DGE---INLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNL 190
Query: 230 VP----------YSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQ 279
P F V+ +R RI + L + F + H++ ++ DG VQP
Sbjct: 191 EPCKLKGSESCAPYIFHVSPKKTYRIRIASTTAL-AALNFAIGNHQLLVVEADGNYVQPF 249
Query: 280 MFDSITIFPGQ-Y--------TPV-NSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALD 329
I I+ G+ Y P N + + + L +L + +
Sbjct: 250 YTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRAR---HPNTPPGLTLLNYLPNSVSKL 306
Query: 330 SSDCSDTNPNVCWNHVNSLTPATEKATVLKAVPDIRLV-FAVDEYHFTRDSLFWNDEDEY 388
+ P + + + A + F N + Y
Sbjct: 307 PTSPPPQTPAW-----DDFDRSKNFTYRITAAMGSPKPPVKFNRRIFL--LNTQNVINGY 359
Query: 389 HRWFQSSPNVIKTHVTNNISLGILPFPILSQDL--------PIPKEMECPKDRSVCGKSA 440
+W N++SL + P P L P P+D + +
Sbjct: 360 VKWA-----------INDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDI--DTP 406
Query: 441 EKGGKLCECVEIIKVGLNQVAEIIFIDW--IGPTSTFLHPMHLHGTDIYIIEQGIIPVAE 498
K + + + +V ++I + + + HP HLHG D +++ G
Sbjct: 407 PTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYG------ 460
Query: 499 DHRAFVGKLQERLAREGPDLATKIRPQ-PCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCH 557
GK + + + + P +++TV I P G+T +R +NPG+W HCH
Sbjct: 461 -----DGKFS-------AEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCH 508
Query: 558 FIFHTETGMNTVFQVGDRKDFVQTPPEFPTCNNYLPPVDPN 598
H GM VF G + P + C + N
Sbjct: 509 IEPHLHMGMGVVFAEGVE-KVGRIPTKALACGGTAKSLINN 548
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 338 bits (868), Expect = e-109
Identities = 137/618 (22%), Positives = 216/618 (34%), Gaps = 88/618 (14%)
Query: 8 GLCARPC-DGAKPMVCYYHFTLENYATIGPACGNCINGTMDDCFKKGCVTADGV-ERPIL 65
R C + Y + P G + + + DGV + ++
Sbjct: 6 TPSNRACWSDGFDINTDYEVS-------TPDTGVTQSYVFNLTEVDNWMGPDGVVKEKVM 58
Query: 66 TINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIP 125
IN + P+I GDT+ V V N +V +IHWHG+ Q+ T DG +T+CPI P
Sbjct: 59 LINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPP 118
Query: 126 E-TTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTII 184
+ Y++ A YGT +YHSH Q +G+ G + I P Y D
Sbjct: 119 KGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQIN-----GPASLPY--DIDLGVFP 171
Query: 185 ITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHR 244
ITD+ + D +++ LING +V + Y+ + G RHR
Sbjct: 172 ITDYYYRAADDLVHFTQNNAPPF-SDNVLINGTAVNPNTGEG----QYANVTLTPGKRHR 226
Query: 245 FRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ---------YTPVN 295
RI+ S + H M +I D PV DS+ + GQ P N
Sbjct: 227 LRILNTSTE-NHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDN 285
Query: 296 SAIVLNINLDAAHMGSRR-DRLNILRLRKSLNALDSSDCSDTNPNVCWNHVN--SLTPAT 352
+ AA GS I + L + + + + C + ++ + P +
Sbjct: 286 YWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRS 345
Query: 353 EKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGIL 412
PD L A+D T LF W N + +
Sbjct: 346 VPVNSFVKRPDNTLPVALD---LTGTPLF--------VWK-----------VNGSDINVD 383
Query: 413 PF-PILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGP 471
PI+ L + + + + + +I D
Sbjct: 384 WGKPIIDYIL-----------------TGNTSYPVSDNIVQVDAVDQWTYWLIEND-PEG 425
Query: 472 TSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDT 531
+ HPMHLHG D ++ + A + FV LAR D P +DT
Sbjct: 426 PFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDN-------PPRRDT 478
Query: 532 VTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD---RKDFVQTPPE--FP 586
+P G+ ++ +NPG W+ HCH +H G++ F R+ Q +
Sbjct: 479 TMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNR 538
Query: 587 TCNNYLPPVDPNEFKNID 604
C+ + N + ID
Sbjct: 539 VCDEWRAYWPTNPYPKID 556
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 333 bits (855), Expect = e-108
Identities = 129/557 (23%), Positives = 184/557 (33%), Gaps = 97/557 (17%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVD----RVVTIHWHGVYQRH 108
+ DG RP + P P I GD + N++++ +IHWHG +Q+
Sbjct: 14 ADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKG 73
Query: 109 TPHSDGVPLLTQCPIIPETTYRYKFPAMP-YGTFFYHSHIGFQKMDGLEGPLVIRRPKKA 167
T +DG +TQCPII ++ Y F GT++YHSH+ Q DGL GP V+ P
Sbjct: 74 TNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN-- 131
Query: 168 DPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTS 227
DP+ + YD D + I + DW H + G +S LI+G
Sbjct: 132 DPDANLYDVDDDTTIITLADWYHVLAKEMGAG-----GAITADSTLIDGLGRTHVNVAAV 186
Query: 228 NPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIF 287
P S V G R+R R++ SC F ++ H M +I DG Q D I IF
Sbjct: 187 ---PLSVITVEVGKRYRMRLVSISCDP-NYDFSIDGHDMTIIETDGVDSQELTVDEIQIF 242
Query: 288 PGQ---------YTPVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNP 338
Q N I N N ILR + A D + T
Sbjct: 243 AAQRYSFVLNANQPVGNYWIRANPNSG-GEGFDGGINSAILRYDGATTA-DPVTVASTVH 300
Query: 339 NVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNV 398
C + L P + V +L + +
Sbjct: 301 TKCLIETD-LHPLSRNG-----------VPGNPHQGGADCNLNLSLGFACGNFV------ 342
Query: 399 IKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLN 458
N +S P+L Q A L +I + N
Sbjct: 343 -----INGVSFTPPTVPVLLQIC----------------SGANTAADLLPSGSVISLPSN 381
Query: 459 QVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDL 518
EI HP HLHG D + E
Sbjct: 382 STIEIALPAGAAGGP---HPFHLHGHDFAVSESA----------------------SNST 416
Query: 519 ATKIRPQPCVKDTVTIPPN-GYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF--QVGDR 575
+ P +D V+I +R +NPG W +HCH +H + G VF + +
Sbjct: 417 SNYDDPI--WRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNT 474
Query: 576 KDFVQTPPEF-PTCNNY 591
P + C +Y
Sbjct: 475 ASANPVPEAWSNLCPSY 491
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 334 bits (857), Expect = e-107
Identities = 141/616 (22%), Positives = 217/616 (35%), Gaps = 94/616 (15%)
Query: 10 CARPC-DGAKPMVCYYHFTLE-NYATIGP-ACGNCINGTMDDCFKKGCVTADGVERPILT 66
C + A C+ ++++ N+ + P ++++ +T DG R +T
Sbjct: 35 TTASCANSATSRSCWGEYSIDTNWYDVTPTGVTREYWLSVEN----STITPDGYTRSAMT 90
Query: 67 INRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPE 126
N +P P+I GD +++ V N + +IHWHG+ Q + DGVP +TQCPI P
Sbjct: 91 FNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPG 150
Query: 127 TTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIIT 186
T YKF YGT +YHSH Q DGL GPL+I P AD YD D I +
Sbjct: 151 DTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPATAD-----YDED--VGVIFLQ 203
Query: 187 DWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGT----SNPVPYSKFKVNKGLR 242
DW H + E+ L+NG + F T + +G +
Sbjct: 204 DWAHESVFEIWDTAR-LGAPPALENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTK 262
Query: 243 HRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ-Y--------TP 293
+R R+I + F ++ H + +I D P+ P D++ I GQ Y
Sbjct: 263 YRLRLINVGIDS-HFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANAAA 321
Query: 294 VNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNPNVCWNH-VNSLTPAT 352
N I N + + ILR S A +S T C + V SL P
Sbjct: 322 DNYWIRGNWGTTCSTNNEAANATGILRYDSSSIANPTSV-GTTPRGTCEDEPVASLVPHL 380
Query: 353 EKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGIL 412
++ D ++ A N + N+ SL +
Sbjct: 381 ALDVGGYSLVDEQVSSAFT-------------------------NYFTWTI-NSSSLLLD 414
Query: 413 PF-PILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGP 471
P + V + + N+ + I+
Sbjct: 415 WSSPTTLKIFNNE----------------TIFPTEYNVVALEQTNANEEWVVYVIE-DLT 457
Query: 472 TSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDT 531
HP+HLHG D +I+ Q + +L P +D
Sbjct: 458 GFGIWHPIHLHGHDFFIVAQE-----------TDVFNSDESPAKFNLVN-----PPRRDV 501
Query: 532 VTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF--QVGDRKDFVQTPPEF-PTC 588
+P NGY + +NPG W++HCH +H G+ F + F TC
Sbjct: 502 AALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVESQSSIAVKMTDTAIFEDTC 561
Query: 589 NNYLPPVDPNEFKNID 604
N+ F D
Sbjct: 562 ANWNAYTPTQLFAEDD 577
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 326 bits (838), Expect = e-105
Identities = 133/568 (23%), Positives = 205/568 (36%), Gaps = 106/568 (18%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRV----VTIHWHGVYQRH 108
V+ DG R + +N + P I+ + D ++V N + + +IHWHG++QR
Sbjct: 14 ANVSPDGFTRAGILVNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRG 72
Query: 109 TPHSDGVPLLTQCPIIPETTYRYKF-PAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKA 167
T +DG + QCPI P + YKF PA GTF+YHSH G Q DGL GP+VI
Sbjct: 73 TNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN-- 130
Query: 168 DPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTS 227
DP+ YD D + I + DW H + ++ LING+ + G
Sbjct: 131 DPHAALYDEDDENTIITLADWYHIPAPSIQGAAQ-------PDATLINGKGRYVGGPAA- 182
Query: 228 NPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIF 287
S V +G ++R R+I SC F ++ H + +I VDG +P D + IF
Sbjct: 183 ---ELSIVNVEQGKKYRMRLISLSCDP-NWQFSIDGHELTIIEVDGELTEPHTVDRLQIF 238
Query: 288 PGQ---------YTPVNSAIVLNINLDAAHMGSRRDRLN---ILRLRKSLNALDSSDCSD 335
GQ N I N + ILR + NA ++ +
Sbjct: 239 TGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANP 298
Query: 336 TNPNVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSS 395
+ +++L D+ L F + R+
Sbjct: 299 NPAQLNEADLHALIDPAAPGIPTPGAADVNLRFQLG--------------FSGGRFT--- 341
Query: 396 PNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKV 455
N + P L Q + A+ L + ++
Sbjct: 342 --------INGTAYESPSVPTLLQIM----------------SGAQSANDLLPAGSVYEL 377
Query: 456 GLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREG 515
NQV E++ + HP HLHG ++ +
Sbjct: 378 PRNQVVELVVPAGVLGGP---HPFHLHGHAFSVVRSA------GSSTY------------ 416
Query: 516 PDLATKIRPQPCVKDTVTIPPNG-YTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF--QV 572
+ ++ +D V++ G +R +NPG W HCH FH G+ VF +
Sbjct: 417 -NFVNPVK-----RDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDM 470
Query: 573 GDRKDFVQTPPEF-PTCNNY--LPPVDP 597
+ D P E+ C Y LPP
Sbjct: 471 ANTVDANNPPVEWAQLCEIYDDLPPEAT 498
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 325 bits (835), Expect = e-105
Identities = 142/566 (25%), Positives = 196/566 (34%), Gaps = 102/566 (18%)
Query: 53 GCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRV----VTIHWHGVYQRH 108
V+ DG R + +N P P + GD ++V + + + +IHWHG +Q
Sbjct: 13 AAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHG 72
Query: 109 TPHSDGVPLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKA 167
T +DG + QCPI P ++ Y F GTF+YHSH+ Q DGL GP V+ P
Sbjct: 73 TNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN-- 130
Query: 168 DPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTS 227
DP+ +YD D I + DW H A+ + LING+ S +
Sbjct: 131 DPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGAD------ATLINGKGRAPSDSVA- 183
Query: 228 NPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIF 287
S KV KG R+RFR++ SC F ++ H + +I VD QP DSI IF
Sbjct: 184 ---ELSVIKVTKGKRYRFRLVSLSCNP-NHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIF 239
Query: 288 PGQ---------YTPVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNP 338
Q N I N N ILR + ++ + T
Sbjct: 240 AAQRYSFVLDANQAVDNYWIRANPNFGNV-GFDGGINSAILRYDGAPAVEPTT--NQTTS 296
Query: 339 NVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNV 398
N V+ L P V VP VD+ ++ +F
Sbjct: 297 VKPLNEVD-LHP-----LVSTPVPGAPSSGGVDK------AINMAFNFNGSNFF------ 338
Query: 399 IKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLN 458
N S P+L Q L + +D G + + N
Sbjct: 339 -----INGASFVPPTVPVLLQIL---SGAQTAQDLLPSGS-------------VYVLPSN 377
Query: 459 QVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDL 518
EI F HP HLHG ++ G +
Sbjct: 378 ASIEISFPA-TAAAPGAPHPFHLHGHTFAVVRSA----------------------GSTV 414
Query: 519 ATKIRPQPCVKDTVTI---PPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG-- 573
P +D V+ +R NNPG W +HCH FH E G V
Sbjct: 415 YNYDNPI--FRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAEDTP 472
Query: 574 DRKDFVQTPPEF-PTCNNY--LPPVD 596
D K P + C Y L P D
Sbjct: 473 DVKAVNPVPQAWSDLCPTYDALDPND 498
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 325 bits (835), Expect = e-104
Identities = 124/579 (21%), Positives = 208/579 (35%), Gaps = 94/579 (16%)
Query: 53 GCVTADGVE-RPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPH 111
DG++ RP++T N + P P I V +GD + + + N + + ++H+HG++Q T
Sbjct: 12 DYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTAS 71
Query: 112 SDGVPLLTQCPIIPETTYRYKFPAMP-YGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPN 170
DGVP LTQCPI P +T Y F GT++YHSH Q DG++G +I+
Sbjct: 72 MDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSFPYD- 130
Query: 171 RDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTE----SFLINGRSVFKSGNGT 226
YD + ++ +++W H + T E + ++N
Sbjct: 131 ---YDEE---LSLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMNL------ 178
Query: 227 SNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITI 286
++V + RI+ F++E H M ++ +DG + + D + I
Sbjct: 179 -------TWEVQPDTTYLLRIVNVGGFV-SQYFWIEDHEMTVVEIDGITTEKNVTDMLYI 230
Query: 287 FPGQ----------YTPVNSAIVLNINLDAAHMGSRRDRLNILRLR--KSLNALDSSDCS 334
Q T N AI+ + + +LN AL + +
Sbjct: 231 TVAQRYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQNYV 290
Query: 335 DTNPNVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQS 394
D+ N + L P ++A + PD + V N ++ + F
Sbjct: 291 DSIDN-FLDDFY-LQPYEKEA--IYGEPDHVITVDVV---------MDNLKNGVNYAF-- 335
Query: 395 SPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIK 454
NNI+ P L L + +
Sbjct: 336 ---------FNNITYTAPKVPTLMTVLSSGDQANNSEI-------------YGSNTHTFI 373
Query: 455 VGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLARE 514
+ +++ EI+ + T HP HLHG I++ R + L E
Sbjct: 374 LEKDEIVEIVLNN----QDTGTHPFHLHGHAFQTIQRD--------RTYDDALGEVPHSF 421
Query: 515 GPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574
PD P +DT+ + P V+R +NPG+W HCH +H G+ V
Sbjct: 422 DPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDP 481
Query: 575 ---RKDFVQTPPE--FPTCNNYLPPVDPNEFKN-IDWDD 607
+ Q E C + + N N +D D
Sbjct: 482 FGIQDAHSQQLSENHLEVCQSCSVATEGNAAANTLDLTD 520
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 317 bits (814), Expect = e-101
Identities = 136/559 (24%), Positives = 195/559 (34%), Gaps = 104/559 (18%)
Query: 55 VTADGV-ERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRV----VTIHWHGVYQRHT 109
+ DG R +T +P I D ++V +++ D +IHWHG +Q T
Sbjct: 35 LDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGT 94
Query: 110 PHSDGVPLLTQCPIIPETTYRYKFPAMP-YGTFFYHSHIGFQKMDGLEGPLVIRRPKKAD 168
DG + QCPIIP ++ Y F GT++YHSH+ Q DGL G V+ P D
Sbjct: 95 TEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN--D 152
Query: 169 PNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSN 228
P+ YD D S I I DW H ++ FP ++ LING + +
Sbjct: 153 PHLSLYDVDDASTVITIADWYHSLSTVLFPNPN--KAPPAPDTTLINGLGRN---SANPS 207
Query: 229 PVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFP 288
+ V G R+RFRI+ SC F ++ HRM +I VDG QP DS+TIF
Sbjct: 208 AGQLAVVSVQSGKRYRFRIVSTSCFP-NYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFA 266
Query: 289 GQ-Y--------TPVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNPN 339
GQ Y N I N + + + + I R + + A ++ +
Sbjct: 267 GQRYSVVVEANQAVGNYWIRANPS-NGRNGFTGGINSAIFRYQGAAVAEPTTSQNSGTAL 325
Query: 340 VCWNHVNSLTPATEKATVLKAVP---DIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSP 396
N L P VP DI L + +
Sbjct: 326 NEAN----LIPLINPGAPGNPVPGGADINLNLRIG---------RNAT---TADFT---- 365
Query: 397 NVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVG 456
N P+L Q L L +I +
Sbjct: 366 -------INGAPFIPPTVPVLLQIL----------------SGVTNPNDLLPGGAVISLP 402
Query: 457 LNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGP 516
NQV EI HP HLHG + ++ +
Sbjct: 403 ANQVIEISIPG------GGNHPFHLHGHNFDVVRTP------GSSVY------------- 437
Query: 517 DLATKIRPQPCVKDTVTIPPNG-YTVVRVHFNNPGIWIMHCHFIFHTETGMNTVF--QVG 573
+ P +D V+I G R +NPG W +HCH +H E G+ VF +
Sbjct: 438 NYVN-----PVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIP 492
Query: 574 DRKDFVQTPPEF-PTCNNY 591
+ P + C Y
Sbjct: 493 NIPIANAISPAWDDLCPKY 511
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 217 bits (554), Expect = 9e-66
Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 24/238 (10%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP 116
+ N ++P+P I V GD + V+V N TIHWHG+ QR T SDGVP
Sbjct: 17 VGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMT-TLPHTIHWHGMLQRGTWQSDGVP 75
Query: 117 LLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQK---MDGLEGPLVIRRPKKADPNRDQ 173
TQ I P T+ YKF A P GT +YH H+ + M G+ GPL++ PK P
Sbjct: 76 HATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIV-EPKNPLPIEKT 134
Query: 174 YDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYS 233
DY ++++DW+ + G + + + IN +S
Sbjct: 135 VTKDYI---LMLSDWVSSWANKPGEGGIPGDVF---DYYTINAKSFP----------ETQ 178
Query: 234 KFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIFPGQ 290
+V KG R R+IG H + DG P+ +P D++ I PG+
Sbjct: 179 PIRVKKGDVIRLRLIGAGDHVHA--IHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGE 234
Score = 52.4 bits (126), Expect = 2e-07
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 39/130 (30%)
Query: 472 TSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDT 531
+H +H HG I + P+ +P DT
Sbjct: 195 AGDHVHAIHTHGHISQIAFKDGFPL---------------------------DKPIKGDT 227
Query: 532 VTIPPNG--YTVVRVHFNNPGIWIMHCHFIFHTETGMN------TVFQVGDRKDFVQTPP 583
V I P G Y V+ ++ +NPG+W++H H HT G T + + + P
Sbjct: 228 VLIGP-GERYDVI-LNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG--IDHPF 283
Query: 584 EFPTCNNYLP 593
++P
Sbjct: 284 YVWKDKKFVP 293
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 214 bits (548), Expect = 1e-64
Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP 116
A G++ + N ++P P I V GD ++V+V N TIHWHGV+Q+ T SDGVP
Sbjct: 18 APGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTSLPH-TIHWHGVHQKGTWRSDGVP 76
Query: 117 LLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQK---MDGLEGPLVIRRPKKADPNRDQ 173
+TQ PI +Y YKF A GT +YH H+ + + G+ GPL++ PK+ P +
Sbjct: 77 GVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIV-DPKQPLPIEKR 135
Query: 174 YDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYS 233
D ++++ W + D G T N + F +N KS T
Sbjct: 136 VTKDVI---MMMSTWESAVADKYGEGGTPMNV---ADYFSVNA----KSFPLT------Q 179
Query: 234 KFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIFPGQ 290
+V KG + R G H M + DG P+ P D++ + PG+
Sbjct: 180 PLRVKKGDVVKIRFFGAGGGIHA--MHSHGHDMLVTHKDGLPLDSPYYADTVLVSPGE 235
Score = 47.4 bits (113), Expect = 8e-06
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 31/92 (33%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
H MH HG D+ + + +P+ P DTV + P
Sbjct: 201 HAMHSHGHDMLVTHKDGLPL---------------------------DSPYYADTVLVSP 233
Query: 537 NG--YTVVRVHFNNPGIWIMHCHFIFHTETGM 566
G Y V+ + +NPG +I H H H G
Sbjct: 234 -GERYDVI-IEADNPGRFIFHDHVDTHVTAGG 263
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 162 bits (411), Expect = 9e-44
Identities = 87/532 (16%), Positives = 160/532 (30%), Gaps = 92/532 (17%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL 117
G N L P++++ RG + VD+ N++ T+HWHG+ DG P
Sbjct: 32 GGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVP--GEVDGGP- 87
Query: 118 LTQCPIIPETTYRYKFPAM-PYGTFFYHSHI----GFQKMDGLEGPLVIRRPKKADPNRD 172
Q I P P T ++H H G Q GL G +VI +
Sbjct: 88 --QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLP 145
Query: 173 QYDTDYPSHTIIITDW-LHGMTDAKFPGNTY-ANFGTRTESFLINGRSVFKSGNGTSNPV 230
+ +I+ D + + A G ++ L NG
Sbjct: 146 KQWGID-DVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGA------------- 191
Query: 231 PYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIFPG 289
Y + +G R R++ G + + +I DG + +P + + G
Sbjct: 192 IYPQHAAPRG-WLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMG 250
Query: 290 Q-----YTPVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNPNVCWNH 344
+ ++ + L + MG D V
Sbjct: 251 ERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPF------------------DKPHPVMRIQ 292
Query: 345 VNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVT 404
+++ + L ++P + + + D + + +
Sbjct: 293 PIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMD 352
Query: 405 NNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEII 464
++ +G + ++ + + + G++ + + Q +
Sbjct: 353 HSQMMGHMGHGNMNHMNH-GGKFDFHHANKINGQAFDMNKPM------FAAAKGQYERWV 405
Query: 465 FIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
G LHP H+HGT I+ + P A +
Sbjct: 406 I---SGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGW--------------------- 441
Query: 525 QPCVKDTVTIPPNGYTVVRVHFN----NPGIWIMHCHFIFHTETGMNTVFQV 572
KDTV + + V V FN ++ HCH + H +TGM F V
Sbjct: 442 ----KDTVKVEG-NVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 154 bits (392), Expect = 1e-41
Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 33/243 (13%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDG 114
+ G +LT P P+++V DT+ + ++N++ +HWHG+ +P D
Sbjct: 28 LAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRL-PEPTNLHWHGL--PISPKVDD 84
Query: 115 VPLLTQCPIIPETTYRYKFPAM--PYGTFFYHSH----IGFQKMDGLEGPLVIRRPKKAD 168
I P ++ Y+F GTF+YH H + Q GL G LV+ A
Sbjct: 85 P----FLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAI 140
Query: 169 PNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSN 228
P + ++ +++ D G + L+NG
Sbjct: 141 PE-LREAEEHL---LVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGA----------- 185
Query: 229 PVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIF 287
P V + R R++ S A ++ H + LI DG + +P + +
Sbjct: 186 LRPT---LVAQKATLRLRLLNASN-ARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLA 241
Query: 288 PGQ 290
PG+
Sbjct: 242 PGE 244
Score = 76.4 bits (188), Expect = 5e-15
Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 27/105 (25%)
Query: 469 IGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528
+ HP HLH ++ G P
Sbjct: 362 VENQGDMDHPFHLHVHPFQVLSVGGRPFPYRAW--------------------------- 394
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVG 573
KD V + + V G + HCH + H + GM V +VG
Sbjct: 395 KDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 142 bits (360), Expect = 2e-38
Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 36/237 (15%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP 116
A G+ + N R+P P++ GD + + N TIH+HGV H DG P
Sbjct: 49 APGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAG-AHPHTIHFHGV---HRATMDGTP 104
Query: 117 LLTQCPIIPETTYRYKFPAMPYGTFFYHSH---IGFQKMDGLEGPLVIRRPKKADPNRDQ 173
+ I P ++ Y+F A P+GT YH H + GL G ++ PK+ P
Sbjct: 105 GIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIV-EPKEGRP---P 160
Query: 174 YDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYS 233
D + +++ + + G E + +NG + PV
Sbjct: 161 ADDEM---VMVMNGY-------------NTDGGDDNEFYSVNGL----PFHFMDFPV--- 197
Query: 234 KFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
KV + R +I F + + + + D+I+ GQ
Sbjct: 198 --KVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTISQVQGQ 252
Score = 62.5 bits (152), Expect = 6e-11
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 28/99 (28%)
Query: 474 TFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVT 533
++ H+HG + G + DT++
Sbjct: 216 DPINSFHIHGNFFHYYPTGTMLT----------------------------PSEYTDTIS 247
Query: 534 IPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
++ + F PG ++ H H E G F+V
Sbjct: 248 QVQGQRGILELRFPYPGKFMFHAHKTEFAELGWMGFFEV 286
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 138 bits (349), Expect = 1e-35
Identities = 65/349 (18%), Positives = 113/349 (32%), Gaps = 50/349 (14%)
Query: 57 ADGVERPILTIN-RRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGV 115
A +E + +P+I + RG + + +KNK+ +HWHG H+D
Sbjct: 20 ATYIEATASGYMAEGVLNPTIILRRGQRVDMTLKNKL-TEPTIVHWHGFDVN--WHNDAH 76
Query: 116 PLLTQCPIIPETTYRYKFPAM-PYGTFFYHSHI----GFQKMDGLEGPLVIRRPKKADPN 170
P I P +Y Y F + GT+ YH H Q G G +++
Sbjct: 77 P---SFAITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDS--GSDL 131
Query: 171 RDQYDTDYPSHTIIITDWLHGMTDAKF-PGNTYANFGTRTESFLINGRSVFKSGNGTSNP 229
+Y + ++I+D + P G + L+ NG +
Sbjct: 132 GFKYGVN--DLPLVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLV---------NGVKDA 180
Query: 230 VPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHR-----MNLITVDGTPV-QPQMFDS 283
V FK+ G +R R++ GS A + + K M LI VD + +P +
Sbjct: 181 V----FKL-SGGSYRLRLVNGSN-ARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRA 234
Query: 284 ITIFPGQ-Y-----TPVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTN 337
+ + P + ++ N D H+ L
Sbjct: 235 LFLAPAERAEVVVELGEGVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGE 294
Query: 338 PNVCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDED 386
V + K R ++ +T + +FWN +
Sbjct: 295 A------VPVEALSDPPPEPPKPTRTRRFALSLSGMQWTINGMFWNASN 337
Score = 64.2 bits (156), Expect = 5e-11
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 462 EIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATK 521
E+ I + ++ HPMHLHG ++IIE+ P A + +
Sbjct: 349 ELWEI--VNDKASMPHPMHLHGFPMWIIERKDSPRQVAELAVDNR-------------GR 393
Query: 522 IRPQPCVKDTVTIPPNGYTVVRVHFNNP---GIWIMHCHFIFHTETGMNTVFQV 572
+ +KDTV I P + V+F+ ++ HCH + H + GM V
Sbjct: 394 LPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQLFPFHCHNLEHEDGGMMINIAV 447
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 140 bits (354), Expect = 2e-35
Identities = 72/600 (12%), Positives = 147/600 (24%), Gaps = 122/600 (20%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-------------------- 97
+ + ++P P+I+V RG + + N+I
Sbjct: 49 QLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNT 108
Query: 98 --------------------TIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPA-M 136
H HG + +DG + ++P
Sbjct: 109 EPGRGGVEPNKDVAALPAWSVTHLHGA--QTGGGNDGWA---DNAVGFGDAQLSEYPNDH 163
Query: 137 PYGTFFYHSHI----GFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGM 192
++YH H + M GL G ++R ++ D + P ++I D
Sbjct: 164 QATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIP---LLIADRNLDT 220
Query: 193 TDAKFPGNTYANFGTRTESFLINGRSVFKSG--------NGTSNPVPYSKFKVNKGLRHR 244
+ + + NG P V+ G +R
Sbjct: 221 DEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIWPY----ADVDDG-WYR 275
Query: 245 FRIIGGSCLACPMLFFV------EKHRMNLITVDGTPV-------QPQMFDSITIFPGQ- 290
R++ S L + ++ I DG + ++ P +
Sbjct: 276 LRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAER 335
Query: 291 ------YTPVNSAIVLNINLDAAHMGSRRDRLNILRLRKSLNALDSSDCSDTNPNVCWNH 344
+ + + ++ D L +R + + C + + +
Sbjct: 336 FDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVL 395
Query: 345 VNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVT 404
S + + + ED + +
Sbjct: 396 SGSFRRMSHDIPHGHRLIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVI--QVTG 453
Query: 405 NNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECVEIIKVGLNQVAEII 464
+ + + + +G +
Sbjct: 454 ADGRTKTYRRTAATFNDGLG----------------------------FTIGEGTHEQWT 485
Query: 465 FIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP 524
F++ S LHPMH+H D ++ + + A G +
Sbjct: 486 FLN----LSPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLA-PN 540
Query: 525 QPCVKDTVTIPPNGYTVVRVHF-NNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPP 583
+ KD +P V F G ++ HCH + H + GM F V +
Sbjct: 541 ELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPEALKFDHG 600
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 134 bits (338), Expect = 6e-34
Identities = 59/241 (24%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP 116
G + T N +P+P I+V GD + + VKNK+ TIHWHGV P DG P
Sbjct: 65 IKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKL-KEATTIHWHGVPVP--PDQDGSP 121
Query: 117 LLTQCPIIP-ET-TYRYKFPAMPYGTFFYHSHI----GFQKMDGLEGPLVIRRPKKADPN 170
PI+ E YR++ P GT++YH H Q GL G VI+ K A
Sbjct: 122 ---HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALS- 177
Query: 171 RDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPV 230
+ + ++I+D +A+ P N + NG P
Sbjct: 178 ---HLKEKD---LMISDLRL-DENAQIP---NNNLNDWLNGREGEFVLI----NGQFKPK 223
Query: 231 PYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIFPG 289
+ R RI + A + ++ + L+ DG + + + + + P
Sbjct: 224 ------IKLATNERIRIYNAT-AARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPA 276
Query: 290 Q 290
Sbjct: 277 S 277
Score = 73.0 bits (179), Expect = 9e-14
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 27/122 (22%)
Query: 453 IKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLA 512
+ L V + I I+ S HP H+HGT +I + +
Sbjct: 387 LSSKLGVVEDWIVIN----KSHMDHPFHIHGTQFELISSKLNGKVQKA------------ 430
Query: 513 REGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
++DT+ + PN +R+ + G+ + HCH + H + GM +V
Sbjct: 431 -----------EFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEV 479
Query: 573 GD 574
+
Sbjct: 480 KE 481
Score = 34.1 bits (78), Expect = 0.14
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 12/108 (11%)
Query: 66 TINRRL---PSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVY-QRHTPHSDGVPLLTQC 121
INR+ + G V NK H HG + + +G +
Sbjct: 374 LINRKSYDLKRIDLSSKLGVVEDWIVINK-SHMDHPFHIHGTQFELISSKLNGKVQKAEF 432
Query: 122 P-------IIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIR 162
+ P R + G YH HI + G+ G L ++
Sbjct: 433 RALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVK 480
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 133 bits (335), Expect = 3e-33
Identities = 40/246 (16%), Positives = 76/246 (30%), Gaps = 36/246 (14%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL 117
D ++ + P P+ QV RG VV N + ++H HG + R DG
Sbjct: 53 DLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNA-EAPNSVHLHGSFSR--AAFDGWA- 108
Query: 118 LTQCPIIPETTYRYKFP-AMPYGTFFYHSH----IGFQKMDGLEGPLVIRRPKKADPNRD 172
+ P + Y +P T +YH H G G ++ P + N
Sbjct: 109 --EDITEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLP 166
Query: 173 QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPY 232
++ +I+T + + + +NG+ P+
Sbjct: 167 SGYGEF-DIPMILTSKQY-TANGNLVTTNGELNSFWGDVIHVNGQ-------------PW 211
Query: 233 SKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHR-------MNLITVDGTPV-QPQMFDSI 284
V + ++RFR + + + + +I D + P +
Sbjct: 212 PFKNV-EPRKYRFRFLDAAV-SRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTSLL 269
Query: 285 TIFPGQ 290
I +
Sbjct: 270 YISMAE 275
Score = 72.7 bits (178), Expect = 1e-13
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 24/124 (19%)
Query: 466 IDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRP- 524
+ I + + HP+H+H D +I R + A + P
Sbjct: 387 WELINAGNGWTHPIHIHLVDFKVIS----------------------RTSGNNARTVMPY 424
Query: 525 QPCVKDTVTIPPNGYTVVRVHF-NNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPP 583
+ +KD V + VV H+ PG+++ HCH + H + M F D+
Sbjct: 425 ESGLKDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLPDYGYNAT 484
Query: 584 EFPT 587
F
Sbjct: 485 VFVD 488
Score = 30.0 bits (67), Expect = 2.9
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 11/85 (12%)
Query: 74 PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVY---QRHTPHSDGVPLLTQCP-------I 123
V G ++ N IH H V T ++ ++ +
Sbjct: 375 LLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWL 434
Query: 124 IPETTYRYKFPAMPY-GTFFYHSHI 147
T + P+ G + +H H
Sbjct: 435 GRRETVVVEAHYAPFPGVYMFHCHN 459
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 123 bits (310), Expect = 2e-30
Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 28/240 (11%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP 116
G + IN R P+I+V +GD + + N++ V++ G+ + G P
Sbjct: 33 TPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRL-TENVSMTVAGL--QVPGPLMGGP 89
Query: 117 LLTQCPIIPETTYRYKFPAM-PYGTFFYHSHI----GFQKMDGLEGPLVIRRPKKADPNR 171
+ P + P T +YH++ Q +GL G ++
Sbjct: 90 ---ARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPI 146
Query: 172 DQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVP 231
+ +II D N + G ++ L+NG
Sbjct: 147 PNHYGVD-DFPVIIQDKRLD-NFGTPEYNEPGSGGFVGDTLLVNGV-------------Q 191
Query: 232 YSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPV-QPQMFDSITIFPGQ 290
+V++G R R++ S L + +++I+ D + P +++ PG+
Sbjct: 192 SPYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGE 250
Score = 51.5 bits (123), Expect = 4e-07
Identities = 12/124 (9%), Positives = 24/124 (19%), Gaps = 37/124 (29%)
Query: 453 IKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLA 512
+ + H+ G I + R +
Sbjct: 349 VTAQQGTWERWTV------RADEPQAFHIEGVMFQIRNVNGAMPFPEDRGW--------- 393
Query: 513 REGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFN----NPGIWIMHCHFIFHTETGMNT 568
KDTV + + V+F + + + + G
Sbjct: 394 ----------------KDTVWVDGQ--VELLVYFGQPSWAHFPFYFNSQTLEMADRGSIG 435
Query: 569 VFQV 572
V
Sbjct: 436 QLLV 439
Score = 29.2 bits (65), Expect = 4.3
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 14/93 (15%)
Query: 66 TINRRL---PSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCP 122
IN +L + +G V+ H GV + + +P
Sbjct: 336 GINGQLWDVNRIDVTAQQGTWERWTVRADEP---QAFHIEGVMFQIRNVNGAMPFPEDRG 392
Query: 123 ------IIPETTYRYKF--PAMPYGTFFYHSHI 147
+ + F P+ + F+++S
Sbjct: 393 WKDTVWVDGQVELLVYFGQPSWAHFPFYFNSQT 425
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 109 bits (273), Expect = 1e-25
Identities = 43/244 (17%), Positives = 75/244 (30%), Gaps = 36/244 (14%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRV-VTIHWHGVYQRHTPHSDGV 115
ADGVE + +P I+V GD I ++ N ++ I H V
Sbjct: 43 ADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT-------GPG 95
Query: 116 PLLTQCPIIPETTYRYKFPAMPYGTFFYHSH---IGFQKMDGLEGPLVIRRPKKADPNRD 172
P T + F A+ G + YH +G +G+ G +++ PK+
Sbjct: 96 GGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYGLILV-EPKEGLAP-- 152
Query: 173 QYDTDYPSHTIIITDW---LHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNP 229
D +Y ++ D+ P + + + NG + +
Sbjct: 153 -VDREY---YLVQGDFYTKGEFGEAGLQPFDMAKAIDEDADYVVFNGSVGSTTDENS--- 205
Query: 230 VPYSKFKVNKGLRHRFRIIGGSCLACPMLFF---VEKHRMNLITVDGTPVQPQMFDSITI 286
G R I P L V + + V+G ++ + I
Sbjct: 206 -----LTAKVGETVRLYIGN----GGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLI 256
Query: 287 FPGQ 290
G
Sbjct: 257 PAGG 260
Score = 48.7 bits (116), Expect = 3e-06
Identities = 23/115 (20%), Positives = 32/115 (27%), Gaps = 31/115 (26%)
Query: 464 IFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIR 523
++I GP H+ G + EG L
Sbjct: 216 LYIGNGGPNLV--SSFHVIGEIFDTV----------------------YVEGGSL----- 246
Query: 524 PQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGDRKD 577
V T IP G +V PG +I+ H IF G + +V D
Sbjct: 247 KNHNV-QTTLIPAGGAAIVEFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300
Score = 28.3 bits (63), Expect = 9.2
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 533 TIPPNGYTVVRVHFNNPGIWIMHCHFI---FHTETGMNTVFQVGDR-------KDFVQTP 582
P + NPG++I HC H GM + V + +++
Sbjct: 102 FTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGLAPVDREYYLVQ 161
Query: 583 PEFPTCNNYLPPVDPNEFKNIDWDDEPTLQT 613
+F T + D++
Sbjct: 162 GDFYTKGEFGEAGLQPFDMAKAIDEDADYVV 192
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 104 bits (261), Expect = 3e-25
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 31/221 (14%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDG 114
+ + +P P I+V GDT+ ++ N + D ++H HG+ + SDG
Sbjct: 17 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGL--DYEISSDG 73
Query: 115 VPLLTQCPIIPETTYRYKFPA-------------MPYGTFFYHSHIGFQKM------DGL 155
+ + + P T Y + G + YH H+ + +GL
Sbjct: 74 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGL 132
Query: 156 EGPLVIRRPKKADPNRD---QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESF 212
GP+++RR P+ ++ ++ T T G +F
Sbjct: 133 YGPVIVRRKGDVLPDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTF 192
Query: 213 LINGRSVFKSGNGT-----SNPVPYSKFKVNKGLRHRFRII 248
++G + G F+II
Sbjct: 193 HMHGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQII 233
Score = 58.1 bits (140), Expect = 2e-09
Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 31/121 (25%)
Query: 468 WIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPC 527
+ + H H+HG GI+ +D
Sbjct: 181 VMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSR------------------------- 215
Query: 528 VKDTVTIPPNG---YTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPE 584
V D P + ++ G W+ HCH H++ GM +F V T P
Sbjct: 216 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPD---GTIPG 272
Query: 585 F 585
+
Sbjct: 273 Y 273
Score = 30.0 bits (67), Expect = 1.8
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 98 TIHWHGVYQRHTPHSDGVPLLTQCP-------IIPETTYRYKFPAMPY---GTFFYHSHI 147
T H HG ++ + + P ++ ++ A G + YH H+
Sbjct: 191 TFHMHG-HRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 249
Query: 148 GFQKMDGLEGPLVIRRPKKADPNRDQY 174
G+ G ++++P P + +
Sbjct: 250 QSHSDMGMVGLFLVKKPDGTIPGYEPH 276
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 108 bits (270), Expect = 4e-25
Identities = 48/267 (17%), Positives = 82/267 (30%), Gaps = 44/267 (16%)
Query: 58 DGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRV--------------------- 96
D + N P P+I+V R + + V N +
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVK 101
Query: 97 VTIHWHGVYQRHTPHSDGVP--LLTQCPIIPETTYR---YKFPAM-PYGTFFYHSHI--- 147
+H HG SDG P ++ ++ Y +P +YH H
Sbjct: 102 TVVHLHGGVTP--DDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMAL 159
Query: 148 -GFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDW-LHGMTDAKFPGNTYANF 205
GL G +I PK+ + D P ++ITD ++ +P
Sbjct: 160 TRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLITDRTINEDGSLFYPSAPENPS 216
Query: 206 GTRTESFLINGRSV-FKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKH 264
+ ++ NG P +V ++RFR+I S L
Sbjct: 217 PSLPNPSIVPAFCGETILVNGKVWPY----LEVEPR-KYRFRVINASNTRTYNLSLDNGG 271
Query: 265 RMNLITVDGTPV-QPQMFDSITIFPGQ 290
I DG + + +S ++ P +
Sbjct: 272 DFIQIGSDGGLLPRSVKLNSFSLAPAE 298
Score = 72.4 bits (177), Expect = 1e-13
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 469 IGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCV 528
I + HP+HLH ++++ +A + P +
Sbjct: 411 IINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPS-------EKGW 463
Query: 529 KDTVTIPPNGYTVVRVHF-NNPGIWIMHCHFIFHTETGMNTVFQVGD 574
KDT+ + F G ++ HCH + H + M + D
Sbjct: 464 KDTIQAHAGEVLRIAATFGPYSGRYVWHCHALEHEDYDMMRPMDITD 510
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism, glycoprotein,
multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens}
SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1kcw_A*
Length = 1065
Score = 106 bits (266), Expect = 4e-24
Identities = 38/244 (15%), Positives = 66/244 (27%), Gaps = 28/244 (11%)
Query: 59 GVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLL 118
VER + + P + GD + + KN R +IH HGV
Sbjct: 795 PVERKAEEEHLGILGPQLHADVGDKVKIIFKNMA-TRPYSIHAHGVQ---------TESS 844
Query: 119 TQCPIIPETTYRYKFPA----------MPYGTFFYHSHI--GFQKMDGLEGPLVIRRPKK 166
T P +P T Y + + Y+S + GL GPL++ R
Sbjct: 845 TVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPY 904
Query: 167 ADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGT 226
+ ++ ++ + D + + + + NG
Sbjct: 905 LKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGR 964
Query: 227 SNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITI 286
++ G + ++G H D I
Sbjct: 965 MFG-NLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSS-----DVFDI 1018
Query: 287 FPGQ 290
FPG
Sbjct: 1019 FPGT 1022
Score = 105 bits (263), Expect = 7e-24
Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 37/248 (14%)
Query: 66 TINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPL-------- 117
+ P I+ GD + V +KN R T H HG+ + +G
Sbjct: 87 PVWLGFLGPIIKAETGDKVYVHLKNLA-SRPYTFHSHGI--TYYKEHEGAIYPDNTTDFQ 143
Query: 118 LTQCPIIPETTYRYKFPA----------MPYGTFFYHSHIGF--QKMDGLEGPLVIRRPK 165
+ P Y Y A T YHSHI GL GPL+I +
Sbjct: 144 RADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKD 203
Query: 166 KADPNRDQ-YDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGN 224
D +++ D ++ ++ + + ++ + S N
Sbjct: 204 SLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQQSNRMYSVN 263
Query: 225 GTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMF--D 282
G + S + R ++ + G + ++ G + + + D
Sbjct: 264 GYTFGSL-SGLSMCAEDRVKWYLFGMG----------NEVDVHAAFFHGQALTNKNYRID 312
Query: 283 SITIFPGQ 290
+I +FP
Sbjct: 313 TINLFPAT 320
Score = 79.6 bits (195), Expect = 1e-15
Identities = 38/259 (14%), Positives = 64/259 (24%), Gaps = 29/259 (11%)
Query: 61 ERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGV----------YQRHTP 110
ER + + P I GDTI V NK ++I GV Y +
Sbjct: 438 ERGPEEEHLGILGPVIWAEVGDTIRVTFHNKG-AYPLSIEPIGVRFNKNNEGTYYSPNYN 496
Query: 111 HSDGVPLLTQCPIIPETTYRYKFPAMPYG----------TFFYHSHIGFQK--MDGLEGP 158
+ + P T+ Y++ Y+S + K GL GP
Sbjct: 497 PQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGP 556
Query: 159 LVIRRPKKADPNRDQYDTDYPSHTII-ITDWLHGMTDAKFPGNTYANFGTRTESFLINGR 217
+ I + N Q D D + + D + +
Sbjct: 557 MKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQE 616
Query: 218 SVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQ 277
S + KG + + A + +
Sbjct: 617 SNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTAN 676
Query: 278 PQMFDSITIF-----PGQY 291
S+T+ G +
Sbjct: 677 LFPQTSLTLHMWPDTEGTF 695
Score = 67.3 bits (163), Expect = 9e-12
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 35/134 (26%)
Query: 444 GKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAF 503
G++ ++ + + + + +G H +H HG +G+
Sbjct: 963 GRMFGNLQGLTMHVGDEVNWYLMG-MGNEIDL-HTVHFHGHSFQYKHRGVYSS------- 1013
Query: 504 VGKLQERLAREGPDLATKIRPQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTE 563
D I P Y + + PGIW++HCH H
Sbjct: 1014 --------------------------DVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIH 1047
Query: 564 TGMNTVFQVGDRKD 577
GM T + V +D
Sbjct: 1048 AGMETTYTVLQNED 1061
Score = 57.3 bits (137), Expect = 1e-08
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 524 PQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV-GDRKDFVQTP 582
+ DT+ + P + NPG W++ C + H + G+ FQV K +
Sbjct: 306 NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDN 365
Query: 583 PEFPTCNNYLPPVDPNEFKNIDWDDEPT 610
+Y + I W+ P+
Sbjct: 366 IRGKHVRHYYIAAEE-----IIWNYAPS 388
Score = 50.7 bits (120), Expect = 1e-06
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPTC 588
+DT + P + + + G + + C H GM + V + + +
Sbjct: 672 RDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGE 731
Query: 589 NNYLPPVDPNEFKNIDWDDEPT 610
Y ++WD P
Sbjct: 732 RTYYIAAVE-----VEWDYSPQ 748
Score = 44.2 bits (103), Expect = 1e-04
Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 11/161 (6%)
Query: 66 TINRRLPS--PSIQVCRGDTIVVDVKNKI-VDRVVTIHWHGVYQRHTPHSDGVPLLTQCP 122
++N + +C D + + V +HG + + T
Sbjct: 261 SVNGYTFGSLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHG----QALTNKNYRIDT-IN 315
Query: 123 IIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHT 182
+ P T + A G + GL+ ++ K+ + +
Sbjct: 316 LFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKHVRHYY 375
Query: 183 IIIT--DWLHG-MTDAKFPGNTYANFGTRTESFLINGRSVF 220
I W + F G+ + F G +
Sbjct: 376 IAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRI 416
Score = 42.6 bits (99), Expect = 4e-04
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 76 IQVCRGDTIVVDVKNKI-VDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFP 134
+ +C+GD++V + + V I++ G +T G + P+T+
Sbjct: 634 LTMCKGDSVVWYLFSAGNEADVHGIYFSG----NTYLWRGERR-DTANLFPQTSLTLHMW 688
Query: 135 AMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYP 179
GTF G++ + + ++ + Y +
Sbjct: 689 PDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERT 733
Score = 41.1 bits (95), Expect = 0.001
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 74 PSIQVCRGDTIVVDVKNK-IVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYK 132
+ + GD + + + T+H+HG ++ GV I P T +
Sbjct: 970 QGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKH--RGVYSSDVFDIFPGTYQTLE 1027
Query: 133 FPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADP 169
G + H H+ G+E + + +
Sbjct: 1028 MFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKS 1064
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 102 bits (254), Expect = 9e-24
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 28/185 (15%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDG 114
+ + +P P I+V GDT+ ++ N + D ++H HG+ + SDG
Sbjct: 58 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGL--DYEISSDG 114
Query: 115 VPLLTQCPIIPETTYRYKFPA-------------MPYGTFFYHSHIGFQKMD------GL 155
+ + + P T Y + G + YH H+ + GL
Sbjct: 115 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGL 173
Query: 156 EGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYA----NFGTRTES 211
GP+++RR P+ + + TI G G+ G +
Sbjct: 174 YGPVIVRRKGDVLPDAT-HTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHT 232
Query: 212 FLING 216
F ++G
Sbjct: 233 FHMHG 237
Score = 59.7 bits (144), Expect = 8e-10
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 28/101 (27%)
Query: 475 FLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTI 534
+ H H+HG GI+ +D V D
Sbjct: 229 YYHTFHMHGHRWADNRTGILTGPDDPSR-------------------------VIDNKIT 263
Query: 535 PPNG---YTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
P + ++ G W+ HCH H++ GM +F V
Sbjct: 264 GPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLV 304
Score = 31.6 bits (71), Expect = 0.71
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 78 VCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCP-------IIPETTYR 130
GD + + + + T H HG + + P ++
Sbjct: 213 ATVGDRVEIVMIT-HGEYYHTFHMHGHRWADN-RTGILTGPDDPSRVIDNKITGPADSFG 270
Query: 131 YKFPAMPY---GTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDT 176
++ A G + YH H+ G+ G ++++P P + ++
Sbjct: 271 FQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPGYEPHEH 319
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 99.2 bits (247), Expect = 6e-23
Identities = 46/240 (19%), Positives = 78/240 (32%), Gaps = 28/240 (11%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP 116
DGVE T + +P I+V GDT+ V+ N H H
Sbjct: 53 DDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNN--PSSTVPHNVDF---HAAT-GQGG 106
Query: 117 LLTQCPIIPETTYRYKFPAMPYGTFFYHSH---IGFQKMDGLEGPLVIRRPKKADPNRDQ 173
P T + F A+ G + YH +G +G+ G +++ PK+ P +
Sbjct: 107 GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILV-EPKEGLP---K 162
Query: 174 YDTDYPSHTIIITDWL---HGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPV 230
D ++ I+ D+ P + + E + NG +G+
Sbjct: 163 VDKEF---YIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNA---- 215
Query: 231 PYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
K G R + G F V + + V+G + + S + G
Sbjct: 216 ----LKAKAGETVRMYVGNGG-PNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGG 270
Score = 48.7 bits (116), Expect = 2e-06
Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 34/127 (26%)
Query: 464 IFIDWIGPTSTFLHPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIR 523
+++ GP H+ G + EG L
Sbjct: 226 MYVGNGGPNLV--SSFHVIGEIFDKV----------------------YVEGGKL----- 256
Query: 524 PQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGDRKD---FV 579
V + +P G +V + PG + + H IF G +V ++
Sbjct: 257 INENV-QSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIMT 315
Query: 580 QTPPEFP 586
Q +
Sbjct: 316 QKLSDTA 322
Score = 31.4 bits (71), Expect = 0.75
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 533 TIPPNGYTVVRVHFNNPGIWIMHCHFI---FHTETGMNTVFQVGDRKDFVQTPPEF 585
P + PG++I HC H GM + V ++ + EF
Sbjct: 112 FTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEF 167
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 94.8 bits (235), Expect = 1e-21
Identities = 35/240 (14%), Positives = 66/240 (27%), Gaps = 52/240 (21%)
Query: 71 LPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP--------LLTQCP 122
L P++ GD + V KNK + ++IH G+ +++ S+G
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKA-HKPLSIHAQGI--KYSKFSEGASYSDHTLPMEKMDDA 113
Query: 123 IIPETTYRYKFPA----------MPYGTFFYHSHIG--FQKMDGLEGPLVIRRPKKADPN 170
+ P Y Y++ P T Y+S++ GL GPL+I + +
Sbjct: 114 VAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTED 173
Query: 171 RDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPV 230
Q + H ++ + + + Y
Sbjct: 174 GTQKMFEK-QHVLMFAVFDESKSWNQTSSLMYT--------------------VNGYVNG 212
Query: 231 PYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
V + +IG S + +IT+
Sbjct: 213 TMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLE--------QNHHKISAITLVSAT 264
Score = 58.6 bits (141), Expect = 1e-09
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574
+T+ T + + G W + H + GM + +
Sbjct: 255 ISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKN 300
Score = 39.4 bits (91), Expect = 0.002
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 74 PSIQVCRGDTIVVDVKN-KIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYK 132
P I VC D I + + +IH++G H ++ T+
Sbjct: 215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAI-----TLVSATSTTAN 269
Query: 133 FPAMPYGTFFYHSHIGFQKMDGLEGPLVIR 162
P G + S I G++ + I+
Sbjct: 270 MTVSPEGRWTIASLIPRHFQAGMQAYIDIK 299
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 98.6 bits (244), Expect = 1e-21
Identities = 36/236 (15%), Positives = 70/236 (29%), Gaps = 25/236 (10%)
Query: 71 LPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQR----HTPHSDGVPLLTQCPIIPE 126
+ P + GDT+++ KN+ I+ HG+ GV L PI+P
Sbjct: 449 ILGPLLYGEVGDTLLIIFKNQASRPY-NIYPHGITDVRPLYSRRLPKGVKHLKDFPILPG 507
Query: 127 TTYRYKFPAMPY----------GTFFYHSHI--GFQKMDGLEGPLVIRRPKKADPNRDQY 174
++YK+ T +Y S + GL GPL+I + D +Q
Sbjct: 508 EIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQI 567
Query: 175 DTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSK 234
+D + + + + + ++ + +
Sbjct: 568 MSDKRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLEDPEFQASNIMHSINGYVFDSLQ 627
Query: 235 FKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQ 290
V + I+ + F + D++T+FP
Sbjct: 628 LSVCLHEVAYWYILSIGAQTDFLSVFFSGYTF---KHKMVYE-----DTLTLFPFS 675
Score = 95.1 bits (235), Expect = 1e-20
Identities = 39/246 (15%), Positives = 68/246 (27%), Gaps = 40/246 (16%)
Query: 71 LPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRH----TPHSDGVPLLTQC--PII 124
L P+IQ DT+V+ +KN V++H GV + D + +
Sbjct: 72 LLGPTIQAEVYDTVVITLKNM-ASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVF 130
Query: 125 PETTYRYKFPA----------MPYGTFFYHSHI--GFQKMDGLEGPLVIRRPKKADPNRD 172
P ++ Y + T+ Y SH+ GL G L++ R +
Sbjct: 131 PGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKT 190
Query: 173 QYDTDYPSHTIII---TDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNP 229
Q + + W ++ A+ + +NG
Sbjct: 191 QTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYV----------N 240
Query: 230 VPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSITIFPG 289
+ +IG F+E H V S+ I P
Sbjct: 241 RSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTF---LVRNHRQ-----ASLEISPI 292
Query: 290 QYTPVN 295
+
Sbjct: 293 TFLTAQ 298
Score = 57.7 bits (138), Expect = 7e-09
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
+DT+T+ P V + NPG+WI+ CH GM + +V
Sbjct: 666 EDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKV 709
Score = 57.3 bits (137), Expect = 1e-08
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGDRKDFVQTPPEFPT 587
+ ++ I P + + + G +++ CH H GM +V + Q +
Sbjct: 284 QASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNE 342
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 6/151 (3%)
Query: 74 PSIQVCRGDTI-VVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYK 132
P + C ++ + V +I G H I P T +
Sbjct: 244 PGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASL-----EISPITFLTAQ 298
Query: 133 FPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGM 192
M G F HI + DG+E + + + R + + + + +TD +
Sbjct: 299 TLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNEEAEDYDDDLTDSEMDV 358
Query: 193 TDAKFPGNTYANFGTRTESFLINGRSVFKSG 223
+ + +
Sbjct: 359 VRFDDDNSPSFIQIRSVAKKHPKTWVHYIAA 389
Score = 37.3 bits (85), Expect = 0.015
Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 68 NRRLPSPSIQVCRGDTIVVDVKN-KIVDRVVTIHWHG-VYQRHTPHSDGVPLLTQCPIIP 125
S + VC + + + +++ + G ++ + D + L P
Sbjct: 620 GYVFDSLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLF------P 673
Query: 126 ETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTD 177
+ G + H + G+ L + K + + +
Sbjct: 674 FSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVSSCDKNTGDYYEDSYE 725
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 88.4 bits (219), Expect = 3e-19
Identities = 37/250 (14%), Positives = 64/250 (25%), Gaps = 28/250 (11%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-D 113
+ +G E +T N +P P + V D + + + N H + +
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLIN----PDTNTLLHNI---DFHAATG 104
Query: 114 GVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSH----IGFQKMDGLEGPLVIRRPKKADP 169
+ + P +F A G F YH + + G+ G +++ P+
Sbjct: 105 ALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMV-LPRDGLK 163
Query: 170 NRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTE------SFLINGRSVFKSG 223
+ Y + + D Y G E L VF
Sbjct: 164 DEKGQPLTYDKIYYVGEQDFYVPKDEAGNYKKYETPGEAYEDAVKAMRTLTPTHIVF--- 220
Query: 224 NGTSNP-VPYSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFD 282
NG G R + + + + G P D
Sbjct: 221 NGAVGALTGDHALTAAVGERVLVVHSQAN---RDTRPHLIGGHGDYVWATGKFRNPPDLD 277
Query: 283 SITIF--PGQ 290
T G
Sbjct: 278 QETWLIPGGT 287
Score = 45.6 bits (108), Expect = 3e-05
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQV-GDRKDFVQTPPEFPT 587
+T IP F PG++ H + E G F+V G+ D + T P
Sbjct: 279 ETWLIPGGTAGAAFYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWNDDLMTSVVKPA 338
Score = 28.3 bits (63), Expect = 7.2
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 533 TIPPNGYTVVRVHFNNPGIWIMHCHFI----FHTETGMNTVFQVGDRKDFVQTPPEFPTC 588
+ P T +R PG+++ HC +H +GMN V R + T
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTY 172
Query: 589 NN---------YLPPVDPNEFKNIDWDDE 608
+ Y+P + +K + E
Sbjct: 173 DKIYYVGEQDFYVPKDEAGNYKKYETPGE 201
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 89.6 bits (222), Expect = 3e-19
Identities = 47/247 (19%), Positives = 82/247 (33%), Gaps = 40/247 (16%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVV-TIHWHGVYQRHTPHSDGV 115
D T N ++P P ++V GDT+ + +KN +V ++ +HG P G
Sbjct: 178 DDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGA---TGP--GGA 232
Query: 116 PLLTQCPIIPETTYRYKFPAMPYGTFFYHSH---IGFQKMDGLEGPLVIRRPKKADPNRD 172
TQ P F A+ G + YH + +G+ G L++ P+ P D
Sbjct: 233 AAFTQ--TDPGEETVVTFKALIPGIYVYHCATPSVPTHITNGMYGLLLV-EPEGGLPQVD 289
Query: 173 QYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPY 232
+ + + T + + + E FL NG + + +P+
Sbjct: 290 REFYVMQGEIYTVKSF---GTSGEQEMDYEKLINEKPEYFLFNGSVGSLTRS---HPL-- 341
Query: 233 SKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLI-------TVDGTPVQPQMFDSIT 285
+ G R P ++I G+ V P + T
Sbjct: 342 ---YASVGETVRIFFGV----GGPNFT----SSFHVIGEIFDHVYSLGSVVSPPLIGVQT 390
Query: 286 IF--PGQ 290
+ PG
Sbjct: 391 VSVPPGG 397
Score = 51.8 bits (124), Expect = 4e-07
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 27/111 (24%)
Query: 477 HPMHLHGTDIYIIEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIRPQPCVKDTVTIPP 536
H+ G V G + TV++PP
Sbjct: 362 SSFHVIGEIFDH-------VYSL-----GSVVSPPLIG--------------VQTVSVPP 395
Query: 537 NGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV-GDRKDFVQTPPEFP 586
G T+V + G +I+ H + E G+ V G + D +
Sbjct: 396 GGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKNDSIMHEGPAK 446
Score = 50.7 bits (121), Expect = 1e-06
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 50 FKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHT 109
+ G V + +P++ V G+T+ V++ N H V
Sbjct: 31 LRTGIAEGRMVYIGVGGDIDHKINPTLVVHEGETVQVNLVNG------EGAQHDV----- 79
Query: 110 PHSDGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADP 169
D + + + F A G F Y+ I + G+EG + + +A+
Sbjct: 80 -VVDQYAARSAIVNGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEM 138
Query: 170 NRDQYDTDYP 179
D
Sbjct: 139 KSSGADITRD 148
Score = 28.7 bits (64), Expect = 6.9
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 15/92 (16%)
Query: 524 PQPCVKDTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV---------GD 574
Q + + N + + G + +C H + GM QV
Sbjct: 82 DQYAARSAIVNGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSS 141
Query: 575 RKDFVQTPPEFPTCNNYLPPVDPNEFKNIDWD 606
D + P + P P+ P + K + D
Sbjct: 142 GADITRDPADLP------GPIGPRQAKTVRID 167
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 76.0 bits (187), Expect = 5e-15
Identities = 42/250 (16%), Positives = 70/250 (28%), Gaps = 28/250 (11%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHS-D 113
+ G +T N +P P++ V GD + + + N H V +
Sbjct: 46 IDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPAT----NAMPHNV---DFHGATG 98
Query: 114 GVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSH----IGFQKMDGLEGPLVIRRPKKADP 169
+ + P +F A GTF YH + + + G+ G L++ P+
Sbjct: 99 ALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMV-LPRDGLK 157
Query: 170 NRDQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTESFLINGRS------VFKSG 223
+ Y I L+ YA + R+ VF
Sbjct: 158 DPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVF--- 214
Query: 224 NGTSNPVPYSK-FKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFD 282
NG + + G + P L + + G P D
Sbjct: 215 NGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLI---GGHGDWVWETGKFANPPQRD 271
Query: 283 SITIF--PGQ 290
T F G
Sbjct: 272 LETWFIRGGS 281
Score = 42.5 bits (100), Expect = 2e-04
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQV---GDRKDFVQTPPEF 585
+T I F PG++ H + E G +V + Q
Sbjct: 273 ETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPA 332
Query: 586 PT 587
P
Sbjct: 333 PI 334
Score = 28.2 bits (63), Expect = 9.0
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 533 TIPPNGYTVVRVHFNNPGIWIMHCHFI----FHTETGMN 567
+ P +R + G ++ HC +H +GM+
Sbjct: 107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMS 145
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 76.0 bits (186), Expect = 2e-14
Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 28/184 (15%)
Query: 60 VERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLT 119
+ + + P I+ D I V KN R ++H HG+ + S+G
Sbjct: 55 DPQGEYEEHLGILGPVIRAEVDDVIQVRFKNL-ASRPYSLHAHGL--SYEKSSEGKTYED 111
Query: 120 QCP--------IIPETTYRYKFPAMPY----------GTFFYHSHIG--FQKMDGLEGPL 159
P I P TY Y + A + Y+S + GL GPL
Sbjct: 112 DSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPL 171
Query: 160 VIRRPKKADPNRDQ--YDTDYPSHTIIITD---WLHGMTDAKFPGNTYANFGTRTESFLI 214
+I R D + ++ ++ + W + + + E I
Sbjct: 172 LICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTRSWRRASSEVKNSHEFHAI 231
Query: 215 NGRS 218
NG
Sbjct: 232 NGMI 235
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 72.6 bits (178), Expect = 6e-14
Identities = 44/266 (16%), Positives = 74/266 (27%), Gaps = 40/266 (15%)
Query: 57 ADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVP 116
+ +T + +P P + V GD + + + N H + H +
Sbjct: 47 DEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLIN----PPENTMPHNIDF-HAAT-GALG 100
Query: 117 LLTQCPIIPETTYRYKFPAMPYGTFFYHSHIG-----FQKMDGLEGPLVIRRPKKADPNR 171
I P +F A G F YH G + + G+ G +++ P+ +
Sbjct: 101 GGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMV-LPRDGLKDH 159
Query: 172 DQYDTDYPSHTIIITDWLHGMTDAKFPGNTYANFGTRTE------SFLINGRSVFKSGNG 225
+ Y + I + D +++ E LI VF NG
Sbjct: 160 EGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVF---NG 216
Query: 226 TSNPVP-YSKFKVNKGLRHRFRIIGGSCLACPMLFFVEKHRMNLITVDGTPVQPQMFDSI 284
+ K G F + + +L+ G D
Sbjct: 217 AVGALTGEGALKAKVGDNVLFVHSQPN---RDSRPHLIGGHGDLVWETGKFHNAPERDLE 273
Query: 285 TIF---------------PGQYTPVN 295
T F PG Y VN
Sbjct: 274 TWFIRGGTAGAALYKFLQPGVYAYVN 299
Score = 39.8 bits (93), Expect = 0.002
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHT-ETGMNTVFQVGDRKD 577
+T I F PG++ H + G V D
Sbjct: 273 ETWFIRGGTAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWD 321
Score = 29.4 bits (66), Expect = 3.6
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 533 TIPPNGYTVVRVHFNNPGIWIMHCHF-----IFHTETGMNTVFQV 572
I P V+R G ++ HC +H +GM V
Sbjct: 106 LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMV 150
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 56.7 bits (136), Expect = 1e-08
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 74 PSIQVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKF 133
P I+ D I+V +N+ R + + + + + P T Y +
Sbjct: 199 PYIRAEVEDNIMVTFRNQ-ASRPYSFYSSLISY--EEDQRQGAEPRKNFVKPNETKTYFW 255
Query: 134 PAMPYG----------TFFYHSHIGFQK--MDGLEGPLVIRRPKKADPNRDQYDTDY 178
+ + Y S + +K GL GPL++ +P + T
Sbjct: 256 KVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQ 312
Score = 30.2 bits (67), Expect = 2.8
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 530 DTVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
+ P + V + + GIW + C H GM+T+F V
Sbjct: 412 ALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLV 454
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 5e-08
Identities = 73/549 (13%), Positives = 143/549 (26%), Gaps = 187/549 (34%)
Query: 48 DCFKKG--CVTADGVERPILTINR-----RLPSPSIQVCRGDTIVVDVKNKIVDRVVTIH 100
D F C + + IL+ R ++ + ++V + V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 101 WHGVYQRHTPHSDGVPLLTQCPIIPETTYRYKFPAMPYGTF------FYHSHIGFQKMDG 154
L PI + P+M + Y+ + F K +
Sbjct: 84 -------EEVLRINYKFLMS-PI----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN- 130
Query: 155 LEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGM-----------------TDAKF 197
+ R + R P+ ++ + G+ K
Sbjct: 131 ------VSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 198 PGNTY-ANFG--TRTESFLINGRSVFK--SGNGTSNPVPYSKFKVNKG-LRHRFRIIGGS 251
+ N E+ L + + N TS S K+ ++ R
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----- 235
Query: 252 CLACPMLFFVEKHRMNLITVDGTPVQP----QMFDS------ITIFPGQYTPVNSAIVLN 301
L + + L+ + VQ F+ T F +++A +
Sbjct: 236 -----RLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 302 INLDAAHMG-SRRDRLNILR--LRKSLNALDSSDCSDTNPNVC----------------W 342
I+LD M + + ++L L L + TNP W
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNW 347
Query: 343 NHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTH 402
HVN +K L + + L + L + EY + F
Sbjct: 348 KHVN-----CDK---LTTIIESSL-----------NVL---EPAEYRKMFDR-------- 377
Query: 403 VTNNISLGILPFPILSQDLPIPKEMECPKDRSVCGKSAEKGGKLC--------ECVEIIK 454
L + P IP + L V ++
Sbjct: 378 ------LSVFP-----PSAHIPTIL------------------LSLIWFDVIKSDVMVV- 407
Query: 455 VGLNQVAEIIFID-WIGPTSTFLHPMHLHGTDIYIIEQGIIPVAED---HRAFVGKLQER 510
+N++ + ++ ++ + IY+ + + + + HR+ V
Sbjct: 408 --VNKLHKYSLVEKQPKESTISIP-------SIYLELK--VKLENEYALHRSIVDHYNIP 456
Query: 511 LAREGPDLA 519
+ DL
Sbjct: 457 KTFDSDDLI 465
Score = 51.0 bits (121), Expect = 1e-06
Identities = 78/563 (13%), Positives = 153/563 (27%), Gaps = 190/563 (33%)
Query: 24 YHFTLENYAT--IGPACG-----NCINGTMDD--CFKKGCVTADGVERPILTINRRL--- 71
Y F + T P+ + +D F K V+ +P L + + L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKLRQALLEL 147
Query: 72 -PSPSI---------------QVCRGDTIVVDVKNKIVDRVVTIHWHGVYQRHTPHSDGV 115
P+ ++ VC + + KI W + ++P +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-------FWLNLKNCNSPETVLE 200
Query: 116 PLLTQCPII-PETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQY 174
L I P T R + L I + R
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNI--------------------KLRIHSIQAEL-RRLLK 239
Query: 175 DTDYPSHTIIITD-WLHGMTDAK----FPGNTYANFGTRTESFLINGR--SVFKSGNGTS 227
Y + +++ + +AK F N + L+ R V + +
Sbjct: 240 SKPYENCLLVLLNVQ-----NAKAWNAF------NLSCKI---LLTTRFKQVTDFLSAAT 285
Query: 228 NPVPYSKFKVNKGLRHR-----F-RIIGGSC-----LAC---PMLF--FVEKHRMNLITV 271
+ L + + P E R L T
Sbjct: 286 TTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 272 DGTP-----------------VQP----QMFDSITIFPGQYTPVN-SAIVLNI---NLDA 306
D ++P +MFD +++FP + I+L++ ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDVI- 400
Query: 307 AHMGSRRDRLNILRL--RKSLNALDSSDCSDTNPNVCWNHVNSLTPATEKATVLKAVPDI 364
+ D + ++ + SL + + + P++ ++ + + +++
Sbjct: 401 -----KSDVMVVVNKLHKYSLVEKQPKESTISIPSI---YLELKVKLENEYALHRSI--- 449
Query: 365 RLVFAVDEYHFTR----DSLFWNDEDEY-------H--------------------RWFQ 393
VD Y+ + D L D+Y H R+ +
Sbjct: 450 -----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 394 SSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMECPKD----RSVCG-----KSAEKGG 444
+ N S IL Q L K C D R V E+
Sbjct: 505 QK--IRHDSTAWNASGSILN---TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 445 KLCECVEIIKVGLNQVAEIIFID 467
+ +++++ L E IF +
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEE 582
Score = 41.0 bits (95), Expect = 0.001
Identities = 50/314 (15%), Positives = 84/314 (26%), Gaps = 96/314 (30%)
Query: 1 MEEAEKIGLCAR---------P---CDGAKPMVC---------------YY-HFTLENYA 32
+ E L + P P + H +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 33 TIGPACGNCIN-GTMDDCFKKGCVTADGVERPILTINRRLPSPSIQVCRGDTIVVDVK-- 89
TI + N + F + V I P+ + + D I DV
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSA--HI-------PTILLSLIWFDVIKSDVMVV 407
Query: 90 -NKIVDRVV--------TIHWHGVYQRHTPHSDGVPLLTQCPI----IPETTYRYKFPAM 136
NK+ + TI +Y + L + + IP+T
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 137 PYGTFFYHSHIGFQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDAK 196
+FY SHIG + +E P++ R + D+ +L + K
Sbjct: 468 YLDQYFY-SHIGHH-LKNIE------HPERMTLFRMVF-LDF--------RFL----EQK 506
Query: 197 FPGNTYANFGTRTESFLINGRSVFKSGNGTSNPVPYSKF-KVNKGLRHRFRIIGGSCLAC 255
++ A + ++N K Y + N R L
Sbjct: 507 IRHDSTAWNAS---GSILNTLQQLKF---------YKPYICDNDPKYER--------LVN 546
Query: 256 PMLFFVEKHRMNLI 269
+L F+ K NLI
Sbjct: 547 AILDFLPKIEENLI 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 4e-07
Identities = 76/455 (16%), Positives = 129/455 (28%), Gaps = 174/455 (38%)
Query: 138 YGTFFYHSHIG--FQKMDGLEGPLVIRRPKKADPNRDQYDTDYPSHTIIITDWLHGMTDA 195
Y T YH +G + L+ R A+ + + I +WL ++
Sbjct: 177 YQT--YHVLVGDLIKFSAETLSELI-RTTLDAEKV-------FT-QGLNILEWLENPSNT 225
Query: 196 KFPGNTY----------------ANF-------GTRTESFLINGRSVFKSGNGTSNPVP- 231
P Y A++ G RS K G S +
Sbjct: 226 --PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL----RSYLKGATGHSQGLVT 279
Query: 232 ---------YSKFKVN--KGLRHRFRIIGGSC-----------------------LACPM 257
+ F V+ K + F IG C + PM
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 258 LFFVEKHRMNLITVDGTPVQPQMFDSITIFPGQYTPVNSAIVL-NINLDAAHM---GSRR 313
L ++ Q Q+ D + + P + + +N A ++ G +
Sbjct: 339 L-----------SISNLT-QEQVQDYVNKT-NSHLPAGKQVEISLVN-GAKNLVVSGPPQ 384
Query: 314 D--RLNILRLRKSLNALDSSDCSDTNPNVCWNHVNSLTPATEKATVLKAVPDIR-L-VFA 369
LN L LRK A D S P +E+ K R L V +
Sbjct: 385 SLYGLN-LTLRK-AKAPSGLD-------------QSRIPFSER----KLKFSNRFLPVAS 425
Query: 370 VDEYHFTRDSLFWNDEDEYHRWFQSSPNVIKTHVTNNISLGILPFPILSQDLPIPKEMEC 429
+H S + ++I + N ++D+ IP +
Sbjct: 426 P--FH----S-------HL---LVPASDLINKDLVKN------NVSFNAKDIQIP--VYD 461
Query: 430 PKD-RSVCGKSAEKGGKLCECVEIIKVGLNQVAEIIFIDWIGPTSTFLHPMHLHGTDIYI 488
D + S ++ +C+ + V W T+T H I
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPV-----------KW--ETTTQFKATH-------I 501
Query: 489 IEQGIIPVAEDHRAFVGKLQERLAREGPDLATKIR 523
++ G P + +G L R ++G T +R
Sbjct: 502 LDFG--P---GGASGLGVLTHRN-KDG----TGVR 526
Score = 35.4 bits (81), Expect = 0.075
Identities = 39/237 (16%), Positives = 67/237 (28%), Gaps = 88/237 (37%)
Query: 55 VTADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRVVT----------IHWH-- 102
+T + V+ + N LP+ G + + + N + VV+ +
Sbjct: 344 LTQEQVQDYVNKTNSHLPA-------GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 103 ----GVYQRHTPHSDGVPLLTQC--PIIPETTYRYKFPAMPYGTFFYHSHI-----GFQK 151
G+ Q P S+ + P+ A P +HSH+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPV-----------ASP-----FHSHLLVPASDLIN 440
Query: 152 MDGLEGPLVIRRPKKADPNRDQYDT----DY--------PSHTIIIT----DWLHGMTDA 195
D ++ + P YDT D I W
Sbjct: 441 KDLVKNNVSFNAKDIQIP---VYDTFDGSDLRVLSGSISERIVDCIIRLPVKW----ETT 493
Query: 196 KFPGNTYA-NFGTRTESFLINGRSVFKSGNGTSNPVPYSKFKVNKGLRHRFRIIGGS 251
T+ +FG S L G ++ +GT G+R I+ G+
Sbjct: 494 TQFKATHILDFGPGGASGL--GVLTHRNKDGT-------------GVR---VIVAGT 532
Score = 34.3 bits (78), Expect = 0.15
Identities = 51/305 (16%), Positives = 75/305 (24%), Gaps = 143/305 (46%)
Query: 232 YSKFKV-----NKGLRHRFRIIGGSCLAC----P----MLFFVEKHR------MNLI--- 269
Y K N+ H G S L P + F EK + +I
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 270 TVDGTPVQPQMFDSIT------IFPG--------QYT-PVNSAIVL-------------N 301
VDG ++F I F Q+T P A+ L
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP---ALTLMEKAAFEDLKSKGL 1752
Query: 302 INLDAA---HMGSRRDRLNILRLRKSL---NALDSSDCSDTNPNVCWNHVNSLTPATEKA 355
I DA H SL AL V S+
Sbjct: 1753 IPADATFAGH---------------SLGEYAAL-----------ASLADVMSIESL---- 1782
Query: 356 TVLKAVPDIRLVFAVDEYHFTRDSLFWN--DEDEYHRWFQSSPNVIKTHVTNNISLGILP 413
+ +VF R DE R +N + I P
Sbjct: 1783 --------VEVVFY-------RGMTMQVAVPRDELGR-------------SNYGMIAINP 1814
Query: 414 FPI---LSQDLPIPKEMECPKDRSVCGKSAEKGGKLCECV-------EII----KVGLNQ 459
+ SQ+ + V + ++ G L E V + + L+
Sbjct: 1815 GRVAASFSQE----------ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 460 VAEII 464
V ++
Sbjct: 1865 VTNVL 1869
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 38.3 bits (88), Expect = 0.002
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 56 TADGVERPILTINRRLPSPSIQVCRGDTIVVDVKNKIVDRV--VTIHWHGVYQRHTPHSD 113
G P ++ +P++++ G T+ V N I G P D
Sbjct: 44 VLPGFPFPSFEVHD-KKNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVID 102
Query: 114 GVPLLTQCPIIP---ETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVIR 162
+ T +P + Y GT++Y I G+ G +V++
Sbjct: 103 PIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGMAATGMFGKIVVK 154
Score = 28.6 bits (63), Expect = 3.9
Identities = 13/66 (19%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 511 LAREGPDLATKIRPQPCVKDTVTIPPNG----YTVVRVHFNNPGIWIMHCHFIFHTETGM 566
+ ++GP A P V T P G + C TGM
Sbjct: 88 ITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGMAATGM 147
Query: 567 NTVFQV 572
V
Sbjct: 148 FGKIVV 153
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper
protein, azurin-L thermophIle; 1.55A {Chloroflexus
aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Length = 140
Score = 33.4 bits (75), Expect = 0.078
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQV 572
T + V PG ++ C F H GM V
Sbjct: 97 TAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.080
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 504 VGKLQERLAREGPDLATKIRPQPCVKDTV 532
+ KLQ L D A P +K T+
Sbjct: 22 LKKLQASLKLYADDSA----PALAIKATM 46
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding
protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4
PDB: 1ibz_A 1ic0_A
Length = 112
Score = 28.7 bits (64), Expect = 2.0
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 18/109 (16%)
Query: 55 VTADGV-ERPILTINRRLPSPSIQVCRGDTIVVDVKNK-IVDRVVTIHWHGVYQRHTPHS 112
+ +GV + I N ++ V +GD + V V+NK + +I GV
Sbjct: 18 LNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGV-------- 69
Query: 113 DGVPLLTQCPIIPETTYRYKFPAMPYGTFFYHSHIGFQKMDGLEGPLVI 161
Q I T F A G F + K L G L +
Sbjct: 70 -------QEVIKAGETKTISFTADKAGAFTIWCQL-HPKNIHLPGTLNV 110
Score = 27.9 bits (62), Expect = 4.1
Identities = 4/44 (9%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 531 TVTIPPNGYTVVRVHFNNPGIWIMHCHFIFHTETGMNTVFQVGD 574
I + + G + + C + + V +
Sbjct: 70 QEVIKAGETKTISFTADKAGAFTIWCQ-LHPKNIHLPGTLNVVE 112
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 28.0 bits (62), Expect = 2.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 492 GIIPVAEDHRAFVGKLQERLAREGPDLATKIR 523
IIP D + + KL E +AR G T +R
Sbjct: 16 AIIPPPPDVQPVIDKLAEYVARNGLKFETSVR 47
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 29.4 bits (66), Expect = 2.9
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 478 PMHLHGTDIYIIEQG-----IIPVAEDHRAFVGKLQERLAREGPDLAT 520
PM L GT+ Y++ G I ++ L++ L +
Sbjct: 26 PMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQE 73
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 29.7 bits (66), Expect = 3.3
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 2 EEAEKIGLCAR-PCDGAKPMVC-YYHFTLENYA-----TIGPACGNCINGTMDDCFKKGC 54
+ K+G CA C+ VC Y NY T+G C C G + C
Sbjct: 365 DTTYKLG-CAVVFCNDFTFGVCQYGPGG--NYMGHVIYTMGQPCSQCSPGATCSVTEGLC 421
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
1.55A {Plasmodium vivax}
Length = 384
Score = 29.6 bits (66), Expect = 3.7
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 384 DEDEYHRWFQSSPNVIKT-------HVTNNISLGILPFPIL 417
++E WF NVI T + + IS LP IL
Sbjct: 256 TKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQIL 296
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA
binding protein; 2.30A {Mycoplasma genitalium} SCOP:
d.287.1.2 d.287.1.2
Length = 406
Score = 28.5 bits (64), Expect = 7.5
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 529 KDTVTIPPNGYTVVRVHFNNPGIWI-MHCHFIFHTETGMNTVF 570
KDT++I NGY++ + ++ + + + F
Sbjct: 272 KDTISIISNGYSLGNIRYHEIPWFNGTGSIALEPMNNEIYVPF 314
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE PG4; 1.70A {Listeria
monocytogenes} SCOP: c.1.15.4
Length = 296
Score = 27.9 bits (62), Expect = 8.9
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 340 VCWNHVNSLTPATEKATVLKAVPDIRLVFAVDEYHFTRD 378
+ ++ V L A V +A D +H+ R
Sbjct: 156 MPYSGVADLQAAWR---VAEACGRDNAQLICDTWHWARA 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.451
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,955,256
Number of extensions: 619647
Number of successful extensions: 1585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 116
Length of query: 613
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 514
Effective length of database: 3,937,614
Effective search space: 2023933596
Effective search space used: 2023933596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)