BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4303
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
pdb|3VX8|C Chain C, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
Length = 292
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 9 KSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETXXXXX 68
+SR L + + EDVSQD+A+KTVT+E HPHLPG AS+HPCRH VMKKII+
Sbjct: 196 ESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGK-HASVHPCRHGAVMKKIIDVLMSRG 254
Query: 69 XXXXXHMYLIIFLKFVQSVIPTIEYDFTQNFTV 101
YL +FLKF+ SVIPTIEYD+T +F +
Sbjct: 255 VEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDL 287
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 281 FRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQ 340
F+E GV++ EFV AGD+LV CPTW W SGD SK K YLP +KQFLIT+NVPC RR
Sbjct: 6 FKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAAS 65
Query: 341 I--DYCEEKQKIIENEQDEEGWVDTHHYDETTGKD 373
+ DY +++ +++D +GW+ TH + GK+
Sbjct: 66 VAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGKE 100
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 178 LDEQDPSIANIPPEKQSPSSPAGDSQECGDIVRTRTYDLHITYDKYYQTPRLWLYGYNE 236
DE D + N P QS A + + +I+RTRTYDL ITYDKYYQTPR+WL GY+E
Sbjct: 139 FDEADNVVENDPATLQSTYLVAHEPDD-DNILRTRTYDLSITYDKYYQTPRVWLTGYDE 196
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Query: 104 MYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCR 137
+ EDVSQD+A+KTVT+E HPHLPG AS+HPCR
Sbjct: 206 VMEDVSQDHARKTVTIEDHPHLPG-KHASVHPCR 238
>pdb|2DYT|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg3
Length = 312
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 261 VKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSY- 319
++ T EYLTP+ +S F TG +TPEEFV AGD+L H PTW+W +ES SY
Sbjct: 4 IRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKW--NEESSDISYR 61
Query: 320 --LPPNKQFLITKNVPCPRRCKQ 340
LP NKQFLI + VPC +R +Q
Sbjct: 62 DFLPKNKQFLIIRKVPCDKRAEQ 84
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 32/124 (25%)
Query: 1 MGANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMA-SIHPCRHAEVMKK 59
+G N+ G +PL+ +QM+ED+S DY KT T+E P ++ SIHPC+HA VMK
Sbjct: 189 VGFNSNG----SPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKI 244
Query: 60 IIETXXXXXXXXXXHM---------------------------YLIIFLKFVQSVIPTIE 92
+++ + YLI+FLKF+ SV P+I+
Sbjct: 245 LLDKVRVVRQRRRKELQEEQELDGVGDWEDLQDDIDDSLRVDQYLIVFLKFITSVTPSIQ 304
Query: 93 YDFT 96
+D+T
Sbjct: 305 HDYT 308
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 102 DQMYEDVSQDYAKKTVTMESHPHLPGPPMA-SIHPCR 137
+QM+ED+S DY KT T+E P ++ SIHPC+
Sbjct: 201 EQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCK 237
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 207 DIVRTRTYDLHITYDKYYQTPRLWLYGYN 235
D+ + R YDL+I Y Y+ P++++ G+N
Sbjct: 164 DMAQERYYDLYIAYSTSYRVPKMYIVGFN 192
>pdb|4GSL|C Chain C, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|D Chain D, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 312
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 261 VKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSY- 319
++ T EYLTP+ +S F TG +TPEEFV AGD+L H PTW+W +ES SY
Sbjct: 4 IRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLAHMFPTWKW--NEESSDISYR 61
Query: 320 --LPPNKQFLITKNVPCPRRCKQ 340
LP NKQFLI + VP +R +Q
Sbjct: 62 DFLPKNKQFLIIRKVPADKRAEQ 84
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 32/124 (25%)
Query: 1 MGANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMA-SIHPCRHAEVMKK 59
+G N+ G +PL+ +QM+ED+S DY KT T+E P ++ SIHPC+HA VMK
Sbjct: 189 VGFNSNG----SPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKI 244
Query: 60 IIETXXXXXXXXXXHM---------------------------YLIIFLKFVQSVIPTIE 92
+++ + YLI+FLKF+ SV P+I+
Sbjct: 245 LLDKVRVVRQRRRKELQEEQELDGVGDWEDLQDDIDDSLRVDQYLIVFLKFITSVTPSIQ 304
Query: 93 YDFT 96
+D+T
Sbjct: 305 HDYT 308
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 102 DQMYEDVSQDYAKKTVTMESHPHLPGPPMA-SIHPCR 137
+QM+ED+S DY KT T+E P ++ SIHPC+
Sbjct: 201 EQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCK 237
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 207 DIVRTRTYDLHITYDKYYQTPRLWLYGYN 235
D+ + R YDL+I Y Y+ P++++ G+N
Sbjct: 164 DMAQERYYDLYIAYSTSYRVPKMYIVGFN 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,767,572
Number of Sequences: 62578
Number of extensions: 505379
Number of successful extensions: 878
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 19
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)