Query psy4303
Match_columns 420
No_of_seqs 272 out of 353
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 22:06:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03986 Autophagy_N: Autophag 100.0 6.2E-53 1.3E-57 374.8 -0.6 108 261-368 2-109 (145)
2 KOG2981|consensus 100.0 3.2E-51 6.9E-56 391.4 6.0 145 255-400 1-164 (295)
3 KOG2981|consensus 100.0 2.3E-45 4.9E-50 351.3 6.9 97 1-101 199-295 (295)
4 PF10381 Autophagy_Cterm: Auto 99.6 4.7E-16 1E-20 103.5 2.1 25 73-97 1-25 (25)
5 PF03987 Autophagy_act_C: Auto 99.0 7.3E-11 1.6E-15 91.0 0.1 42 10-52 21-62 (62)
6 PF03987 Autophagy_act_C: Auto 97.6 3E-05 6.6E-10 59.9 2.0 22 217-238 1-22 (62)
7 KOG4741|consensus 94.2 0.04 8.7E-07 51.7 3.1 53 10-63 88-143 (173)
8 TIGR03829 YokU_near_AblA uncha 39.4 18 0.00039 31.2 1.5 30 308-337 4-38 (89)
9 KOG3130|consensus 31.3 46 0.00099 36.0 3.3 36 110-147 229-264 (514)
10 smart00258 SAND SAND domain. 26.2 29 0.00064 28.9 0.7 23 283-307 31-53 (73)
11 PF09050 SNN_linker: Stannin u 22.3 50 0.0011 22.7 1.1 21 334-354 1-21 (26)
12 PF04580 Pox_D3: Chordopoxviri 20.4 1.8E+02 0.0039 29.4 4.9 90 243-339 21-123 (246)
No 1
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=100.00 E-value=6.2e-53 Score=374.82 Aligned_cols=108 Identities=63% Similarity=1.146 Sum_probs=43.8
Q ss_pred HHhhhhhhhhhcccccccCCceeeeccChHHHHHccccccccCCceeecCCCCCcccCCCCCCCceEEeCCCCCcccccc
Q psy4303 261 VKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQ 340 (420)
Q Consensus 261 v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~gd~sk~r~yLP~dKQFLVTRnVPC~rR~k~ 340 (420)
|+|++++||||||||+|+|+|++||+|||||||+||||||||||||||++|+++++|+|||+||||||||||||++||++
T Consensus 2 l~s~~~~~~e~ltPv~~~S~F~etG~iTPeEFV~AGD~LV~k~PTW~W~~g~~~k~k~yLP~dKQfLvtRnVPC~~R~~~ 81 (145)
T PF03986_consen 2 LRSTFSSVREYLTPVLHESKFKETGVITPEEFVAAGDYLVHKFPTWQWSAGDPSKRKDYLPKDKQFLVTRNVPCYRRAKD 81 (145)
T ss_dssp --------------------HHHHS---HHHHHHHHHHHHHH-TT-EE---TTB---TTS-TT-S-EEEEEEEE-S-TTT
T ss_pred hHHHHHHHHHHhcCCCCcccccccceeCHHHHHHhhhHHHhhCCcceeccCCccccCCCCCCCCeEEEecCcccHHhhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhccccCCCCceeecccccC
Q psy4303 341 IDYCEEKQKIIENEQDEEGWVDTHHYDE 368 (420)
Q Consensus 341 ~~~~~~~E~iv~~~d~ddGWV~T~~~~~ 368 (420)
+.+....|.+++++++++|||.||++..
T Consensus 82 ~~~~~~~e~~~~~~~~ddgWv~t~~~~~ 109 (145)
T PF03986_consen 82 MEYSEEDEEIVEDDDDDDGWVDTHHNQT 109 (145)
T ss_dssp ----------------------------
T ss_pred ccccccccceeccCCCCCCeEccCCccc
Confidence 9988778888888888999999998643
No 2
>KOG2981|consensus
Probab=100.00 E-value=3.2e-51 Score=391.40 Aligned_cols=145 Identities=54% Similarity=0.953 Sum_probs=126.1
Q ss_pred HHHHHHHHhhhhhhhhhcccccccCCceeeeccChHHHHHccccccccCCceeecCCCCCcccCCCCCCCceEEeCCCCC
Q psy4303 255 QSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPC 334 (420)
Q Consensus 255 ~~~~n~v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~gd~sk~r~yLP~dKQFLVTRnVPC 334 (420)
||+.|.|+|++++||||||||+++|+|++||+|||||||+|||+||||||||||++|+++|+|+|||+||||||||||||
T Consensus 1 q~~~n~l~sa~l~~~E~lTpv~k~S~F~etGvitpeEFV~AGD~Lvh~cPTW~W~~gd~~k~r~fLPkdKQfLItRnVpC 80 (295)
T KOG2981|consen 1 QNLANTLKSAALNWREYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWSWAEGDESKIRPFLPKDKQFLITRNVPC 80 (295)
T ss_pred CcHHHHHHHHHHhHHHhcccccchhhhhhcCccCHHHHHhccchhhhcCCccccccCCcccccccCCCCceEEEeccChH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhhhccccCCCCceeecccccC------------------CC-CCCcccchhcccccccCCCCccccc
Q psy4303 335 PRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDE------------------TT-GKDIAIEDKISEISLDASTGWVDTH 395 (420)
Q Consensus 335 ~rR~k~~~~~~~~E~iv~~~d~ddGWV~T~~~~~------------------~~-~~~~~i~e~~~em~le~~~~~~~~~ 395 (420)
+|||+||++.++.|.+++++++ +|||+||+... .. ....+.+|.+..++++.+++..+.-
T Consensus 81 ~kR~~q~~~~ee~e~iv~~Edg-~gwvdT~~~ed~le~~~~e~ih~~~t~~~~~e~~~edddE~~d~~e~~e~d~~edp~ 159 (295)
T KOG2981|consen 81 YKRCKQMEYVEELEVIVDEEDG-GGWVDTHNEEDTLEYIGKETIHSQDTPAAAPESSDEDDDELIDMEELEESDEEEDPA 159 (295)
T ss_pred HHHHhhhhcccccceEEeccCC-CccccccchhhcccccchhhcccCCCCcCCccccccccccccccccccccccccCHH
Confidence 9999999999999999875554 99999995421 00 2334466777777787777666667
Q ss_pred ccccc
Q psy4303 396 HYDET 400 (420)
Q Consensus 396 ~~~~~ 400 (420)
+|+.+
T Consensus 160 ~~~s~ 164 (295)
T KOG2981|consen 160 TFVSK 164 (295)
T ss_pred HHhhh
Confidence 77774
No 3
>KOG2981|consensus
Probab=100.00 E-value=2.3e-45 Score=351.31 Aligned_cols=97 Identities=71% Similarity=1.140 Sum_probs=94.2
Q ss_pred CCCCCCCCCCCCCCChhhhhhhccccccCCceeeccCCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHH
Q psy4303 1 MGANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIF 80 (420)
Q Consensus 1 ~g~~~~G~~~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIF 80 (420)
+|||.+| +|||++|||||||+|||+||||||+|||+++..||||||||||+||||||++++++|++|+|||||+||
T Consensus 199 ~Gyde~r----~pLt~E~myEDvS~Dha~KTvTiE~hPh~~~~~m~SVHPCkHa~vMkklI~~~~e~g~~l~Vd~YL~lF 274 (295)
T KOG2981|consen 199 VGYDENR----QPLTVEQMYEDVSQDHAKKTVTIEKHPHLPGPNMASVHPCKHAEVMKKLIDQVRERGDELGVDQYLILF 274 (295)
T ss_pred EEecCCC----CcCCHHHHHHHhhhhhccCeEEeccCCCCCCCCccccccchhHHHHHHHHHHHHhcCCCcceehhHHHH
Confidence 5999888 999999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred HHHhhhcccceeecccccccc
Q psy4303 81 LKFVQSVIPTIEYDFTQNFTV 101 (420)
Q Consensus 81 LKFI~SViPTIEyDyT~~~~~ 101 (420)
||||||||||||||||++|.|
T Consensus 275 LKFv~sViPtiEyDYT~~~~l 295 (295)
T KOG2981|consen 275 LKFVQSVIPTIEYDYTMEFWL 295 (295)
T ss_pred HHHHHhhccceEeeeeeeccC
Confidence 999999999999999999875
No 4
>PF10381 Autophagy_Cterm: Autophagocytosis associated protein C-terminal; InterPro: IPR019461 Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The small C-terminal domain is likely to be a distinct binding region for the stability of the autophagosome complex []. It carries a highly characteristic conserved FLKF sequence motif. ; PDB: 2DYT_A.
Probab=99.59 E-value=4.7e-16 Score=103.47 Aligned_cols=25 Identities=72% Similarity=1.233 Sum_probs=20.6
Q ss_pred ccchHHHHHHHhhhcccceeecccc
Q psy4303 73 VHMYLIIFLKFVQSVIPTIEYDFTQ 97 (420)
Q Consensus 73 VdqYLvIFLKFI~SViPTIEyDyT~ 97 (420)
|||||+||||||+|||||||||||+
T Consensus 1 vd~yl~iFLKFi~sViPtIeyD~t~ 25 (25)
T PF10381_consen 1 VDQYLVIFLKFISSVIPTIEYDYTM 25 (25)
T ss_dssp GGGHHHHHHHHHHHHSTTB--TT--
T ss_pred CceeehhHHHHHhhcCCceeeeccC
Confidence 7999999999999999999999996
No 5
>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.
Probab=98.99 E-value=7.3e-11 Score=90.98 Aligned_cols=42 Identities=48% Similarity=0.831 Sum_probs=31.3
Q ss_pred CCCCCChhhhhhhccccccCCceeeccCCCCCCCCceeeecCC
Q psy4303 10 SRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCR 52 (420)
Q Consensus 10 ~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~l~~~~~aSIHPCK 52 (420)
+|.||+.++|++|++.+++++|||++.||+++ .++.+|||||
T Consensus 21 ~g~~l~~~~~~~~~~~~~~~~~it~~~HP~l~-~p~~~iHPC~ 62 (62)
T PF03987_consen 21 DGSPLSLEEVYEDLSPDSADSTITQEEHPILG-IPWYSIHPCD 62 (62)
T ss_dssp T--B--HHHHHTTS-TTTHHHHEEEEE-TTBS-S-EEEE-S-S
T ss_pred CCCCCCHHHHHHhhccccccceeecccCCCCC-CceEEEcCCC
Confidence 34999999999999999999999999999996 6899999997
No 6
>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.
Probab=97.61 E-value=3e-05 Score=59.91 Aligned_cols=22 Identities=50% Similarity=0.869 Sum_probs=20.0
Q ss_pred EEeeeccccCCeeeEeeccCCC
Q psy4303 217 HITYDKYYQTPRLWLYGYNERF 238 (420)
Q Consensus 217 ~ityd~~y~tpr~~l~gy~e~~ 238 (420)
+|+||++||+|+||+.||++++
T Consensus 1 ~I~Ys~~YqvP~L~f~~~~~~g 22 (62)
T PF03987_consen 1 HITYSPSYQVPVLYFRGYDEDG 22 (62)
T ss_dssp EEEEETTTTEEEEEEEEEETT-
T ss_pred CEEecCccCCCEEEEEEECCCC
Confidence 6999999999999999999865
No 7
>KOG4741|consensus
Probab=94.16 E-value=0.04 Score=51.71 Aligned_cols=53 Identities=32% Similarity=0.540 Sum_probs=40.7
Q ss_pred CCCCCChhhhhhhccccccC---CceeeccCCCCCCCCceeeecCCchHHHHHHHHH
Q psy4303 10 SRAPLTVDQMYEDVSQDYAK---KTVTMESHPHLPGPPMASIHPCRHAEVMKKIIET 63 (420)
Q Consensus 10 ~~~PLt~~qmfEDIs~Dya~---KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~ 63 (420)
+|.||+..+|-|=--.+--. -++|--.||+|. .+---+||||-+++||.+-++
T Consensus 88 ngrpl~~r~v~Ei~~t~l~e~~~~~Itq~eHP~Lg-~pyy~LHPC~Tse~mke~~k~ 143 (173)
T KOG4741|consen 88 NGRPLRVRQVAEILGTKLEENDAIVITQSEHPTLG-IPYYKLHPCDTSELMKEIPKR 143 (173)
T ss_pred CCCchhhhhhHHhhcCccccCccceeeeccCCccc-ceeeeecCCcHHHHHhhcCCc
Confidence 46999999777643332211 478888999995 788999999999999988654
No 8
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=39.37 E-value=18 Score=31.17 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=21.8
Q ss_pred ecCCC---CCcccCC--CCCCCceEEeCCCCCccc
Q psy4303 308 WASGD---ESKAKSY--LPPNKQFLITKNVPCPRR 337 (420)
Q Consensus 308 W~~gd---~sk~r~y--LP~dKQFLVTRnVPC~rR 337 (420)
|+++. +++.--+ ||++.+.+|.|||||..-
T Consensus 4 ~C~~~~~~~~~tTv~~el~~G~~~IvIknVPa~~C 38 (89)
T TIGR03829 4 WCEEEKAIARTTTVYWELPDGTKAIEIKETPSISC 38 (89)
T ss_pred ccCCCceecceEEEEEEecCCceEEEEecCCcccc
Confidence 77553 2333334 899999999999999864
No 9
>KOG3130|consensus
Probab=31.29 E-value=46 Score=35.99 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=17.4
Q ss_pred HhHhheeeeccCCCCCCCCCCcccccchhccccccccc
Q psy4303 110 QDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKASNQT 147 (420)
Q Consensus 110 q~~~~~~~t~~~~~~~p~p~~~s~~~~~~~~~k~s~~~ 147 (420)
|+-.-+-+|-+-+|-|-. +.|.-|-+.-|..+-|.+
T Consensus 229 ~~~~~~k~td~~~~~l~~--~~~~tp~s~~r~~~~n~s 264 (514)
T KOG3130|consen 229 NVNAMHKVTDSHTPCLKD--VASSTPFSGQRNSQLNCS 264 (514)
T ss_pred cchhhhhhhcccchHhhc--CCCcCcchhhhhhccccc
Confidence 344444455544444432 245556555555555543
No 10
>smart00258 SAND SAND domain.
Probab=26.22 E-value=29 Score=28.87 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=18.2
Q ss_pred eeeccChHHHHHccccccccCCcee
Q psy4303 283 ETGVVTPEEFVAAGDHLVHHCPTWQ 307 (420)
Q Consensus 283 etG~LTPEEFV~AGD~LV~kfPTWq 307 (420)
+...+||.||..-|-.--.| .|+
T Consensus 31 ~~~~~TP~eFe~~~g~~~~K--~WK 53 (73)
T smart00258 31 EDKWFTPKEFEIEGGKGKSK--DWK 53 (73)
T ss_pred CCEEEChHHHHhhcCCcccC--Ccc
Confidence 45689999999988877666 665
No 11
>PF09050 SNN_linker: Stannin unstructured linker; InterPro: IPR015136 This entry represents an unstructured protein region which connects two adjacent stannin helical domains. It contains a conserved CXC metal-binding motif and a putative 14-3-3-zeta binding domain. Upon coordinating dimethytin, considerable structural or dynamic changes in the flexible loop region of SNN may take place, recruiting other binding partners such as 14-3-3-zeta, and thereby initiating the apoptotic cascade []. ; PDB: 1ZZA_A.
Probab=22.26 E-value=50 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=11.6
Q ss_pred Ccccccccccchhhhhhcccc
Q psy4303 334 CPRRCKQIDYCEEKQKIIENE 354 (420)
Q Consensus 334 C~rR~k~~~~~~~~E~iv~~~ 354 (420)
||-|++.+..++++|.|+.++
T Consensus 1 cylrlqr~sqsedeesivgeg 21 (26)
T PF09050_consen 1 CYLRLQRISQSEDEESIVGEG 21 (26)
T ss_dssp TTTSS-SS-SS---TTTTTTT
T ss_pred CeehhhhhccccchhhcccCC
Confidence 888888887777777777443
No 12
>PF04580 Pox_D3: Chordopoxvirinae D3 protein ; InterPro: IPR007660 This is a family of Chordopoxvirinae D3 protein. The conserved region occupies the entire length of D3 protein.
Probab=20.38 E-value=1.8e+02 Score=29.40 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=61.4
Q ss_pred ceeehHHHHHHHHHHHHHHHhhhhhhhhhc-cccc--------ccCCceeeec-cChHHHHHccccccccCCceeecCCC
Q psy4303 243 NLVLISKWCNRMQSVINSVKGTALGVAEYL-TPVL--------KESKFRETGV-VTPEEFVAAGDHLVHHCPTWQWASGD 312 (420)
Q Consensus 243 ~lv~~~~~~~~M~~~~n~v~s~~~~vreyl-TPvl--------~eS~F~etG~-LTPEEFV~AGD~LV~kfPTWqW~~gd 312 (420)
--+|+..|.+.+++.+..++...-=..+|. ||-- -+|+|.-.|. +|.|||..||=. -.|+...
T Consensus 21 ~fiLLGnh~~fI~~~L~~l~~~~~F~~~Y~vtpD~~gtL~~~~v~SS~~i~~ryvnveEFi~~g~~-------~~wC~~~ 93 (246)
T PF04580_consen 21 TFILLGNHNEFINNILKKLKEKIVFYCEYEVTPDDEGTLCVRFVSSSFKIKNRYVNVEEFISAGYP-------IHWCSKN 93 (246)
T ss_pred EEEEecCcHHHHHHHHHHHhhCeeEEEEEEeccCCCCeEEEEeeecceeECCeeeeHHHHHhcCcc-------chhhccc
Confidence 355777778888888888776533333443 3322 2799999999 999999999843 3587765
Q ss_pred CCcccCCCCCCC---ceEEeCCCCCccccc
Q psy4303 313 ESKAKSYLPPNK---QFLITKNVPCPRRCK 339 (420)
Q Consensus 313 ~sk~r~yLP~dK---QFLVTRnVPC~rR~k 339 (420)
..+...+-..|| |=++++.--|-+|+-
T Consensus 94 ~~~~~~~~~~D~l~I~di~~~~~~~wkril 123 (246)
T PF04580_consen 94 TEKNPNSTDPDKLIIYDICYFENNCWKRIL 123 (246)
T ss_pred cccCCCCCCCCcEEEEEEEEecCCceeEEE
Confidence 544433444555 346788888999985
Done!