Query psy4303
Match_columns 420
No_of_seqs 272 out of 353
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 22:06:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dyt_A Autophagy-related prote 100.0 1.2E-46 4.3E-51 366.6 0.4 105 259-364 2-114 (312)
2 3vx8_B Autophagy-related prote 100.0 1.5E-41 5.1E-46 328.5 0.9 87 280-366 5-93 (292)
3 3vx8_B Autophagy-related prote 100.0 9.4E-40 3.2E-44 316.0 6.5 97 2-103 193-289 (292)
4 2dyt_A Autophagy-related prote 100.0 1.1E-36 3.9E-41 296.7 4.4 94 2-100 190-312 (312)
5 4ebr_A Ubiquitin-like-conjugat 98.5 7.3E-09 2.5E-13 92.5 -2.6 57 17-83 101-158 (169)
6 4ebr_A Ubiquitin-like-conjugat 97.6 1.6E-05 5.4E-10 71.0 1.6 31 210-240 61-91 (169)
7 3vx7_B E2; ubiquitin conjugati 90.5 0.083 2.8E-06 47.5 1.4 42 29-83 100-141 (152)
8 3vx7_B E2; ubiquitin conjugati 87.9 0.27 9.2E-06 44.2 2.8 26 212-237 49-74 (152)
9 2lpu_A Kmatg10; autophagy, E2- 78.9 0.48 1.6E-05 42.8 0.0 26 212-237 49-74 (152)
10 2lpu_A Kmatg10; autophagy, E2- 70.6 1.1 3.9E-05 40.4 0.0 39 30-81 101-139 (152)
11 1ufn_A Putative nuclear protei 23.9 20 0.00069 30.0 0.5 20 286-307 49-68 (94)
No 1
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-46 Score=366.61 Aligned_cols=105 Identities=40% Similarity=0.726 Sum_probs=60.2
Q ss_pred HHHHhhhhhhhhhcccccccCCceeeeccChHHHHHccccccccCCceeecCC-CCCcccCCCCCCCceEEeCCCCCccc
Q psy4303 259 NSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASG-DESKAKSYLPPNKQFLITKNVPCPRR 337 (420)
Q Consensus 259 n~v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~g-d~sk~r~yLP~dKQFLVTRnVPC~rR 337 (420)
|.++|++++||||||||+++|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+||
T Consensus 2 n~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R 81 (312)
T 2dyt_A 2 SMIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKR 81 (312)
T ss_dssp ---------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSC
T ss_pred hhHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHH
Confidence 56899999999999999999999999999999999999999999999999866 78899999999999999999999999
Q ss_pred ccccccchhhhhhcc-------ccCCCCceeecc
Q psy4303 338 CKQIDYCEEKQKIIE-------NEQDEEGWVDTH 364 (420)
Q Consensus 338 ~k~~~~~~~~E~iv~-------~~d~ddGWV~T~ 364 (420)
|+++. ....+.+++ ++++++|||.||
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~dgWv~t~ 114 (312)
T 2dyt_A 82 AEQCV-EVEGPDVIMKGFAEDGDEDDVLEYIGSE 114 (312)
T ss_dssp TTTC------------------------------
T ss_pred hhhcc-ccchhhhhhccccccccccCCCceeecc
Confidence 99984 333344443 346688999998
No 2
>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-41 Score=328.51 Aligned_cols=87 Identities=52% Similarity=1.041 Sum_probs=60.1
Q ss_pred CceeeeccChHHHHHccccccccCCceeecCCCCCcccCCCCCCCceEEeCCCCCccccccc--ccchhhhhhccccCCC
Q psy4303 280 KFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQI--DYCEEKQKIIENEQDE 357 (420)
Q Consensus 280 ~F~etG~LTPEEFV~AGD~LV~kfPTWqW~~gd~sk~r~yLP~dKQFLVTRnVPC~rR~k~~--~~~~~~E~iv~~~d~d 357 (420)
+|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||+|||+++ .+.+..|.+++++++|
T Consensus 5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d 84 (292)
T 3vx8_B 5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN 84 (292)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999 5666666777777788
Q ss_pred Cceeecccc
Q psy4303 358 EGWVDTHHY 366 (420)
Q Consensus 358 dGWV~T~~~ 366 (420)
+|||.||++
T Consensus 85 dgWv~t~~~ 93 (292)
T 3vx8_B 85 DGWLATHGK 93 (292)
T ss_dssp ---------
T ss_pred CceeecCCc
Confidence 999999874
No 3
>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=100.00 E-value=9.4e-40 Score=315.98 Aligned_cols=97 Identities=53% Similarity=0.838 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCCChhhhhhhccccccCCceeeccCCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHHH
Q psy4303 2 GANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFL 81 (420)
Q Consensus 2 g~~~~G~~~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIFL 81 (420)
||+.+| +||+++||||||++||++||||+|.|||| +.+++||||||||+|||+||+++.++|++++|||||+|||
T Consensus 193 gy~~~g----~PL~~ee~~edi~~d~~~ktVT~e~HP~l-~~p~~siHPC~ha~vMk~l~~~~~~~~~~~~v~~YL~ifL 267 (292)
T 3vx8_B 193 GYDESR----MLLQPELVMEDVSQDHARKTVTIEDHPHL-PGKHASVHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFL 267 (292)
T ss_dssp EECTTS----CBCCGGGGGGTSCCC----CEEEEECSSS-SSEEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGHHHHHH
T ss_pred EECCCC----CcCCHHHHHHHhhhhhhcceEEeecCCcc-CCceeEEecCCcHHHHHHHHHHHHhcCCCcChhhHHHHHH
Confidence 677777 99999999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred HHhhhcccceeecccccccccc
Q psy4303 82 KFVQSVIPTIEYDFTQNFTVDQ 103 (420)
Q Consensus 82 KFI~SViPTIEyDyT~~~~~~~ 103 (420)
|||||||||||||||++|++.+
T Consensus 268 kFi~sViPTIEyDyT~~~~~~~ 289 (292)
T 3vx8_B 268 KFMASVIPTIEYDYTMDFDLGS 289 (292)
T ss_dssp HHHTTTSTTCCCCCCC------
T ss_pred HHHhhccCCEEEEeeeeEeccC
Confidence 9999999999999999999864
No 4
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=296.71 Aligned_cols=94 Identities=46% Similarity=0.750 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCCChhhhhhhccccccCCceeeccCCC--CCCCCceeeecCCchHHHHHHHHHHH--------------
Q psy4303 2 GANNQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPH--LPGPPMASIHPCRHAEVMKKIIETVL-------------- 65 (420)
Q Consensus 2 g~~~~G~~~~~PLt~~qmfEDIs~Dya~KTVTiE~hP~--l~~~~~aSIHPCKHA~VMK~li~~~~-------------- 65 (420)
||+.+| +||++++|||||+++|+.||||+|.||| + +.+++||||||||+|||+|++++.
T Consensus 190 gy~~dg----~PL~~~e~~edi~~d~~~ktVT~e~HP~~~l-g~p~~sIHPCkta~vMk~l~~~~~~~~~~~~~~~~~~~ 264 (312)
T 2dyt_A 190 GFNSNG----SPLSPEQMFEDISADYRTKTATIEKLPFYKN-SVLSVSIHPCKHANVMKILLDKVRVVRQRRRKELQEEQ 264 (312)
T ss_dssp EEETTC----CBCCHHHHHTTSCTTTHHHHEEEEECTTBSS-CCEEEEECSCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eECCCC----CCCCHHHHHHHHHHhhccCceecccCCCccC-CCceEEEecCcHHHHHHHHHHHHhhhhhhccccccccc
Confidence 667666 9999999999999999999999999999 6 589999999999999999999997
Q ss_pred -------------hcCCcccccchHHHHHHHhhhcccceeeccccccc
Q psy4303 66 -------------EGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFT 100 (420)
Q Consensus 66 -------------~~g~~l~VdqYLvIFLKFI~SViPTIEyDyT~~~~ 100 (420)
++|+++||||||+|||||||||||||||||||+|.
T Consensus 265 ~~~~~~~w~~~~~~~~~~irvd~YLviFLKFIasViPtIEyD~T~~~~ 312 (312)
T 2dyt_A 265 ELDGVGDWEDLQDDIDDSLRVDQYLIVFLKFITSVTPSIQHDYTMEGW 312 (312)
T ss_dssp HHTTCTTC--------CCCCGGGHHHHHHHHHHHHSTTBCCTTC----
T ss_pred cccccccchhcccccCCCcCcchhHHHHHHHhcccCCCeEeeecccCC
Confidence 46778999999999999999999999999999873
No 5
>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}
Probab=98.47 E-value=7.3e-09 Score=92.48 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=46.6
Q ss_pred hhhhhhccccccCCceeecc-CCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHHHHH
Q psy4303 17 DQMYEDVSQDYAKKTVTMES-HPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKF 83 (420)
Q Consensus 17 ~qmfEDIs~Dya~KTVTiE~-hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIFLKF 83 (420)
.+++++++++++.+|||++. ||++ |.+..+||||+||++|+. .......||+.+|-.
T Consensus 101 ~~~~~~~~~~~~~~t~~~~~~Hp~~-g~p~~~iHPC~T~~~m~~---------~~~~~~~YL~~WlSl 158 (169)
T 4ebr_A 101 PTDIESLLDVQGKFQLGLDTIINLE-GSVWYSFHPCDTSCIVGD---------QAEFMSTYLRRWVSI 158 (169)
T ss_dssp HHHHHHHHTTTTCCCCSSEEEEEET-TEEEEECCSSCGGGSCCT---------TCTTGGGGHHHHHHH
T ss_pred hHHHHHHhccccceEEEeccCCCCC-CCceEEEcCcCcHHHHhc---------cccchHhHHHHHHHH
Confidence 37889999999999999986 6776 579999999999999963 234567899988753
No 6
>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}
Probab=97.60 E-value=1.6e-05 Score=70.99 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.3
Q ss_pred eeeeeEEEEeeeccccCCeeeEeeccCCCCC
Q psy4303 210 RTRTYDLHITYDKYYQTPRLWLYGYNERFKG 240 (420)
Q Consensus 210 ~~rtyd~~ityd~~y~tpr~~l~gy~e~~~~ 240 (420)
+.++||++|+|+++||+|+||+.||+++..+
T Consensus 61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~ 91 (169)
T 4ebr_A 61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSID 91 (169)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEEEEEEET
T ss_pred cceEEEEEEEEecccCCcEEEEEEEcCCCCc
Confidence 3488999999999999999999999986543
No 7
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=90.51 E-value=0.083 Score=47.53 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCceeeccCCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHHHHH
Q psy4303 29 KKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKF 83 (420)
Q Consensus 29 ~KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIFLKF 83 (420)
.-+|++..||+++ -+.-+||||+-+++|+... ..||.-++-+
T Consensus 100 ~~sI~L~~hp~l~-~~wy~IHPCdT~eivg~~~------------~nYL~rW~Sv 141 (152)
T 3vx7_B 100 TFSVTLSTDMEMK-SVYYYINNCDTDANVGSDV------------EHYLTRWISL 141 (152)
T ss_dssp TCCEEEEECTTSS-SEEEEECCTTHHHHHCSCS------------TTHHHHHHHH
T ss_pred ceeEEeeeccccC-CceEEEcCccHHHHhccch------------hhHHHHHHHH
Confidence 5799999999986 6999999999999987322 6888877654
No 8
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=87.92 E-value=0.27 Score=44.24 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=24.2
Q ss_pred eeeEEEEeeeccccCCeeeEeeccCC
Q psy4303 212 RTYDLHITYDKYYQTPRLWLYGYNER 237 (420)
Q Consensus 212 rtyd~~ityd~~y~tpr~~l~gy~e~ 237 (420)
-.||++|+|+++||.|.||+..|..+
T Consensus 49 ~~~e~~I~Ys~~YqvPvL~fR~~~~~ 74 (152)
T 3vx7_B 49 TLLELHIYYDHVYHVPSIKFRLWSLD 74 (152)
T ss_dssp EEEEEEEEECSSSSSEEEEEEEEEEE
T ss_pred eEEEEEEEEeccccCceEEEEeecCC
Confidence 67999999999999999999999875
No 9
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=78.90 E-value=0.48 Score=42.79 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.9
Q ss_pred eeeEEEEeeeccccCCeeeEeeccCC
Q psy4303 212 RTYDLHITYDKYYQTPRLWLYGYNER 237 (420)
Q Consensus 212 rtyd~~ityd~~y~tpr~~l~gy~e~ 237 (420)
=++|++|+|+++||-|+||+.=|+.+
T Consensus 49 ~~iE~~I~Y~~~YqVP~L~fRlwe~~ 74 (152)
T 2lpu_A 49 TLLELHIYYDHVYHVPSIKFRLWSLD 74 (152)
Confidence 46899999999999999999877664
No 10
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=70.56 E-value=1.1 Score=40.38 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=31.2
Q ss_pred CceeeccCCCCCCCCceeeecCCchHHHHHHHHHHHhcCCcccccchHHHHH
Q psy4303 30 KTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFL 81 (420)
Q Consensus 30 KTVTiE~hP~l~~~~~aSIHPCKHA~VMK~li~~~~~~g~~l~VdqYLvIFL 81 (420)
=+|+++.+++.+ ...-+||||.-+++|+. .++.||.-++
T Consensus 101 fsi~Ld~~~~~~-s~Wy~IHpCdTs~iVg~------------~~~~YL~rW~ 139 (152)
T 2lpu_A 101 FSVTLSTDMEMK-SVYYYINNCDTDANVGS------------DVEHYLTRWI 139 (152)
Confidence 348999999986 59999999999999866 5667776443
No 11
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=23.85 E-value=20 Score=29.98 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=17.5
Q ss_pred ccChHHHHHccccccccCCcee
Q psy4303 286 VVTPEEFVAAGDHLVHHCPTWQ 307 (420)
Q Consensus 286 ~LTPEEFV~AGD~LV~kfPTWq 307 (420)
.+||.||+..|-....| .|+
T Consensus 49 w~TP~EFe~~~g~~~sK--dWK 68 (94)
T 1ufn_A 49 WLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp EECHHHHHHHHTCTTCS--CHH
T ss_pred EEChHHhhhhcCccccc--Ccc
Confidence 89999999999988777 665
Done!