Query psy4303
Match_columns 420
No_of_seqs 272 out of 353
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 22:07:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4303.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4303hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wlza1 a.39.1.7 (A:229-311) D 30.2 18 0.0013 25.4 3.0 40 252-295 6-45 (83)
2 d2diia1 a.240.1.1 (A:8-55) TFI 29.9 6.8 0.0005 27.6 0.6 11 284-294 32-42 (48)
3 d1oqja_ d.217.1.1 (A:) Glucoco 27.0 8.6 0.00062 30.0 0.8 25 281-307 33-57 (90)
4 d1vqza2 d.104.1.3 (A:1-241) Lp 24.2 15 0.0011 30.9 2.0 28 283-310 213-240 (241)
5 d1sfka_ a.190.1.1 (A:) Flavivi 22.0 23 0.0017 26.7 2.4 33 57-90 6-38 (73)
6 d1h5pa_ d.217.1.1 (A:) Nuclear 18.2 15 0.0011 28.9 0.5 22 284-307 41-63 (95)
7 d1ufna_ d.217.1.1 (A:) Putativ 14.7 20 0.0015 27.9 0.5 20 286-307 49-68 (94)
8 d2c8ma1 d.104.1.3 (A:1-256) Li 14.2 16 0.0012 31.1 -0.2 29 283-311 227-255 (256)
9 d1qk7a_ g.3.6.2 (A:) Lectin SH 13.9 19 0.0014 23.2 0.1 6 304-309 21-26 (32)
10 d1zpwx1 d.58.58.1 (X:2-83) Hyp 13.9 88 0.0064 23.0 4.0 46 228-295 3-48 (82)
No 1
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.18 E-value=18 Score=25.42 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccCCceeeeccChHHHHHc
Q psy4303 252 NRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAA 295 (420)
Q Consensus 252 ~~M~~~~n~v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~A 295 (420)
++|..+.+.+++....+++.+.-.- -..+|.||.+||.++
T Consensus 6 ei~~~l~~~i~~~~~~l~~~F~~~D----~~~~G~i~~~ef~~~ 45 (83)
T d1wlza1 6 DILARLHKAVTSHYHAITQEFENFD----TMKTNTISREEFRAI 45 (83)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHC----TTCSSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC----CCCCceEChhHHHHH
Confidence 5677777777777777776654432 235899999999886
No 2
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.93 E-value=6.8 Score=27.64 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=9.6
Q ss_pred eeccChHHHHH
Q psy4303 284 TGVVTPEEFVA 294 (420)
Q Consensus 284 tG~LTPEEFV~ 294 (420)
+|+||+|||-+
T Consensus 32 s~VitseEFWa 42 (48)
T d2diia1 32 SQVISAEEFWA 42 (48)
T ss_dssp TTSSCHHHHHH
T ss_pred hccccHHHHHH
Confidence 69999999964
No 3
>d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.98 E-value=8.6 Score=29.99 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=20.2
Q ss_pred ceeeeccChHHHHHccccccccCCcee
Q psy4303 281 FRETGVVTPEEFVAAGDHLVHHCPTWQ 307 (420)
Q Consensus 281 F~etG~LTPEEFV~AGD~LV~kfPTWq 307 (420)
..+...+||.||+.-|..--.| .|+
T Consensus 33 ~~~g~w~TP~EFe~~~gk~~sK--~WK 57 (90)
T d1oqja_ 33 KFNDQLISPKHFVHLAGKSTLK--DWK 57 (90)
T ss_dssp EETTEEECHHHHHHHTTCGGGS--CHH
T ss_pred eECCEEECHHHHhhhcCccccC--CCc
Confidence 3356789999999999988877 565
No 4
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=24.23 E-value=15 Score=30.94 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=22.2
Q ss_pred eeeccChHHHHHccccccccCCceeecC
Q psy4303 283 ETGVVTPEEFVAAGDHLVHHCPTWQWAS 310 (420)
Q Consensus 283 etG~LTPEEFV~AGD~LV~kfPTWqW~~ 310 (420)
+.+.+|++|+-+|-...-.||.+|.|.=
T Consensus 213 ~~~~l~~~e~~~~~~l~~~ky~s~~W~~ 240 (241)
T d1vqza2 213 TEYVFSEEELAEINRIKDTKFGTWDWNY 240 (241)
T ss_dssp EECCCCHHHHHHHHHHHHHTTTCHHHHT
T ss_pred cccCCCHHHHHHHHHHHHhHcCCccccC
Confidence 4688999999888544456999999963
No 5
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=22.03 E-value=23 Score=26.67 Aligned_cols=33 Identities=24% Similarity=0.621 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCcccccchHHHHHHHhhhcccc
Q psy4303 57 MKKIIETVLEGGGELGVHMYLIIFLKFVQSVIPT 90 (420)
Q Consensus 57 MK~li~~~~~~g~~l~VdqYLvIFLKFI~SViPT 90 (420)
.|+++..+-.+.+.+|.=+.++-|++|.+ +-||
T Consensus 6 ~KR~~~~ll~GrGP~R~vLA~laFfRFtA-i~Pt 38 (73)
T d1sfka_ 6 LKRAMLSLIDGRGPTRFVLALLAFFRFTA-IAPT 38 (73)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHc-cCCC
Confidence 58888888888889999999999999864 4443
No 6
>d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.22 E-value=15 Score=28.87 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=17.8
Q ss_pred ee-ccChHHHHHccccccccCCcee
Q psy4303 284 TG-VVTPEEFVAAGDHLVHHCPTWQ 307 (420)
Q Consensus 284 tG-~LTPEEFV~AGD~LV~kfPTWq 307 (420)
.| .+||.||+.-|...-.| .|+
T Consensus 41 ~g~w~TP~EFe~~~Gk~~sK--dWK 63 (95)
T d1h5pa_ 41 DKKWFTPREFEIEGDRGASK--NWK 63 (95)
T ss_dssp TTEEECHHHHHHHHTCSTTC--CHH
T ss_pred CCcEeCHHHHhhccCCcccC--CCc
Confidence 45 89999999999977666 665
No 7
>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.67 E-value=20 Score=27.94 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=15.7
Q ss_pred ccChHHHHHccccccccCCcee
Q psy4303 286 VVTPEEFVAAGDHLVHHCPTWQ 307 (420)
Q Consensus 286 ~LTPEEFV~AGD~LV~kfPTWq 307 (420)
.+||+||+..|..--.| .|+
T Consensus 49 w~TP~eFe~~~gk~~~K--~WK 68 (94)
T d1ufna_ 49 WLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp EECHHHHHHHHTCTTCS--CHH
T ss_pred EECHHHHHHhcCccccC--CCc
Confidence 89999999998865555 454
No 8
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}
Probab=14.23 E-value=16 Score=31.08 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.6
Q ss_pred eeeccChHHHHHccccccccCCceeecCC
Q psy4303 283 ETGVVTPEEFVAAGDHLVHHCPTWQWASG 311 (420)
Q Consensus 283 etG~LTPEEFV~AGD~LV~kfPTWqW~~g 311 (420)
..+.||++|..+|......|+.+|.|.=|
T Consensus 227 ~~~~lt~~e~~~~~~l~~~ky~~~eW~yg 255 (256)
T d2c8ma1 227 REDTITEKEESLARELFDKKYSTEEWNMG 255 (256)
T ss_dssp EECCCCHHHHHHHHHHHHHTTTSHHHHHC
T ss_pred cccCCCHHHHHHHHHHHHhhcCCccCCCC
Confidence 45789999999998877899999999743
No 9
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=13.94 E-value=19 Score=23.22 Aligned_cols=6 Identities=50% Similarity=1.775 Sum_probs=5.2
Q ss_pred Cceeec
Q psy4303 304 PTWQWA 309 (420)
Q Consensus 304 PTWqW~ 309 (420)
|||+|.
T Consensus 21 ~twkwc 26 (32)
T d1qk7a_ 21 RTWKWC 26 (32)
T ss_dssp SSSCBE
T ss_pred Cceeee
Confidence 799996
No 10
>d1zpwx1 d.58.58.1 (X:2-83) Hypothetical protein TTP0101 (TT1823) {Thermus thermophilus [TaxId: 274]}
Probab=13.88 E-value=88 Score=23.04 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=30.0
Q ss_pred eeeEeeccCCCCCCcceeehHHHHHHHHHHHHHHHhhhhhhhhhcccccccCCceeeeccChHHHHHc
Q psy4303 228 RLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAA 295 (420)
Q Consensus 228 r~~l~gy~e~~~~~~~lv~~~~~~~~M~~~~n~v~s~~~~vreylTPvl~eS~F~etG~LTPEEFV~A 295 (420)
++||.-||=+. ..-++.+...+. .|..+ ...|-|. |.||+.+|.+-
T Consensus 3 ~~ylV~YDI~d----------------~krr~kv~k~l~---~yg~r-vQ~SVFe--~~lt~~~~~~l 48 (82)
T d1zpwx1 3 RLYAVAYDIPD----------------DTRRVKLANLLK---SYGER-VQLSVFE--CYLDERLLEDL 48 (82)
T ss_dssp EEEEEEEECCC----------------HHHHHHHHHHHH---TTEEE-EETTEEE--EEECHHHHHHH
T ss_pred EEEEEEEeCCC----------------cHHHHHHHHHHH---HhCcc-ceEEEEE--EEcCHHHHHHH
Confidence 68899998755 334444443333 34443 4789996 78999998764
Done!