RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4303
(420 letters)
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 207 bits (530), Expect = 2e-66
Identities = 80/147 (54%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 260 SVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSY 319
S+ V EYLTPVLK SKFRETGV+TPEEFVAAGD+LVH PTW WA+GD SK + Y
Sbjct: 1 SLHSALSSVREYLTPVLKTSKFRETGVITPEEFVAAGDYLVHKFPTWSWAAGDPSKIRPY 60
Query: 320 LPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYDETTGKDIAIEDK 379
LPP+KQFL+T+NVPC RR KQ++Y + ++I+E+E +++GWV TH + DIA E+
Sbjct: 61 LPPDKQFLVTRNVPCYRRAKQMEYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEED 120
Query: 380 ISEISLDASTGWVDTHHYDETTGKDIA 406
I EI D VD+ DE DI
Sbjct: 121 IPEIGDDDDDV-VDSSDADEDDDDDIP 146
>gnl|CDD|202841 pfam03987, Autophagy_act_C, Autophagocytosis associated protein,
active-site domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the vacuole. The cysteine
residue within the HPC motif is the putative
active-site residue for recognition of the Apg5 subunit
of the autophagosome complex.
Length = 62
Score = 69.6 bits (171), Expect = 3e-15
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 9 KSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCR 52
+ PL+ ++M+ED+ DY KTVT+E HP L G P SIHPC+
Sbjct: 20 EDGKPLSPEEMFEDIVPDYRDKTVTLEEHPFL-GIPWYSIHPCK 62
Score = 64.5 bits (158), Expect = 2e-13
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 99 FTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCR 137
+ ++M+ED+ DY KTVT+E HP L G P SIHPC+
Sbjct: 25 LSPEEMFEDIVPDYRDKTVTLEEHPFL-GIPWYSIHPCK 62
Score = 46.4 bits (111), Expect = 4e-07
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 217 HITYDKYYQTPRLWLYGYNE 236
+ITYDK YQ PRL+L GY+E
Sbjct: 1 YITYDKSYQVPRLYLRGYDE 20
>gnl|CDD|150967 pfam10381, Autophagy_Cterm, Autophagocytosis associated protein
C-terminal. Autophagocytosis is a starvation-induced
process responsible for transport of cytoplasmic
proteins to the vacuole. The small C-terminal domain is
likely to be a distinct binding region for the
stability of the autophagosome complex. It carries a
highly characteristic conserved FLKF sequence motif.
Length = 25
Score = 59.5 bits (145), Expect = 5e-12
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 73 VHMYLIIFLKFVQSVIPTIEYDFTQ 97
V YL IFLKF+ SVIPTIEYD+T
Sbjct: 1 VDQYLFIFLKFIASVIPTIEYDYTT 25
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 33.7 bits (77), Expect = 0.16
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 122 HPHLPGPPMASIHPCRAIKSKASNQTQSCNKPNSTEEEDDDDEEALD----MEDFEESGF 177
P G + C+ + A ++ + E EDDDD++A D +++ E F
Sbjct: 55 PPSPHGARDEAARLCQIQELLAEMRSSEEYPDSGAEAEDDDDDDAPDDVAYPDEYAEDDF 114
Query: 178 LDEQDPSIANIPPEKQSPSSPAGDSQE 204
L P P+ P G + E
Sbjct: 115 LPGDGAPDH--DPAPCGPAPPGGLTPE 139
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 30.8 bits (70), Expect = 0.59
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 154 NSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSP 195
S E+E DDDEE + ED EE D++D S P K+
Sbjct: 108 ASEEDESDDDEEDEEEEDDEED---DDEDESEEEESPVKKVK 146
>gnl|CDD|239895 cd04448, DEP_PIKfyve, DEP (Dishevelled, Egl-10, and Pleckstrin)
domain found in fungal RhoGEF (GDP/GTP exchange factor)
PIKfyve-like proteins. PIKfyve contains N-terminal Fyve
finger and DEP domains, a central chaperonin-like domain
and a C-terminal PIPK (phosphatidylinositol phosphate
kinase) domain. PIKfyve-like proteins are important
phosphatidylinositol (3)-monophosphate
(PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which
plays a major role in multivesicular body (MVB) sorting
and control of retrograde traffic from the vacuole back
to the endosome and/or Golgi. PIKfyve itself has been
shown to be play a role in regulating
early-endosome-to-trans-Golgi network (TGN) retrograde
trafficking.
Length = 81
Score = 29.3 bits (66), Expect = 0.76
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 224 YQTPRLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVA----EYLTPVLKES 279
+Q R L Y GKE LV W R V+ A+G A ++ V +
Sbjct: 15 FQDHRYRLRTYTNCILGKE-LV---NWLIRQGKAATRVQAIAIGQALLDAGWIECVSDDD 70
Query: 280 KFRET 284
FR+
Sbjct: 71 LFRDE 75
>gnl|CDD|220629 pfam10199, Adaptin_binding, Alpha and gamma adaptin binding protein
p34. p34 is a protein involved in membrane trafficking.
It is known to interact with both alpha and gamma
adaptin. It has been speculated that p34 may play a
chaperone role such as preventing the soluble adaptors
from co-assembling with soluble clathrin, or helping to
remove the adaptors from the coated vesicle. Another
possible function is in aiding the recruitment of
soluble adaptors onto the membrane.
Length = 101
Score = 29.0 bits (65), Expect = 1.7
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 142 KASNQTQSCNKPNSTEEEDDDDEEALDMEDFE 173
+ +Q S S++EEDDD +E LD+EDFE
Sbjct: 39 SSDDQGDSLEPSKSSQEEDDDGDEELDVEDFE 70
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.7 bits (69), Expect = 1.8
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 126 PGPPMASIHPCRAIKSKASNQT-------------QSCNKPNSTEEEDDDDEEALDMEDF 172
P + H + S AS+ Q+ P+ TE+ D D D E
Sbjct: 2991 SSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERS 3050
Query: 173 EESGFLDEQDPSIANIPPEKQSPSSPAGDSQE 204
+ LD P + + P++P ++E
Sbjct: 3051 DLEA-LDPLPPEPHDPFAHEPDPATPEAGARE 3081
>gnl|CDD|220391 pfam09769, ApoO, Apolipoprotein O. Members of this family promote
cholesterol efflux from macrophage cells. They are
present in various lipoprotein complexes, including HDL,
LDL and VLDL. The apoprotein is secreted by a microsomal
triglyceride transfer protein (MTTP)-dependent
mechanism, probably as a VLDL-associated protein that is
subsequently transferred to HDL.
Length = 154
Score = 29.2 bits (66), Expect = 2.1
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 180 EQDPSIANIPPEKQSP-SSPAGDSQECGDIVRTRTYDLHITYDKYYQTPRLWLYGYNERF 238
E D +PP + PA S+ G VRT ++ +++ RL L Y
Sbjct: 3 EDDEPSVPVPPTELPIYPEPAEQSKAHGISVRTPPP-----LEEGFRSARLTLEPYLSWV 57
Query: 239 KGKENLVLISKWCNRMQSVINSVKG 263
+ K N V SK+ + +SV ++V
Sbjct: 58 EDKVNTVK-SKYLDTERSVTSTVAS 81
>gnl|CDD|225814 COG3275, LytS, Putative regulator of cell autolysis [Signal
transduction mechanisms].
Length = 557
Score = 30.0 bits (68), Expect = 2.4
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 36 SHPHLPGPPMASIHPCR---HAEVMKKIIETVLEGGG-ELGVHMYLIIFLKFVQSVIPTI 91
H+PG P+ S + EV+ V E + L+I L+ VI TI
Sbjct: 259 DDHHIPGKPIISSLTRKAIKTGEVVYADGNEVYECSHPTCKLGSALVIPLRGKGRVIGTI 318
Query: 92 EYDFTQN---FTVDQ-MYEDVSQDYAKKTVTMESH 122
+ + ++++ + E ++Q + + E+
Sbjct: 319 KLYEAKARLISSINRELAEGIAQLLSAQIEAGEAE 353
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 29.5 bits (67), Expect = 3.5
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 32 VTMESHPHLPGPPMASIHPCR-----HAEVMKKIIETVLEGGGELGVHMYLIIF 80
+ ES P+ P P IHP R HAE + K+I+ LE G + L+ F
Sbjct: 25 LFNESDPYKP--PSGGIHP-REAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAF 75
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 29.0 bits (65), Expect = 4.0
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 137 RAIKSKASNQTQSCNKPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPS 196
R + S + ++P S + ED++DE+ ED ++ +E+ S ++ + + S
Sbjct: 200 RDMLSSMDMAEELGDEPESADSEDNEDEDD-PKEDEDDDQGEEEESGSSDSLSEDSDASS 258
Query: 197 S 197
Sbjct: 259 E 259
>gnl|CDD|237088 PRK12393, PRK12393, amidohydrolase; Provisional.
Length = 457
Score = 29.3 bits (66), Expect = 4.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 16/45 (35%)
Query: 369 TTGKDIAIED-KISEIS----------LDAST-----GWVDTHHY 397
G DI I D +I+ I +DA+ GWV+THH+
Sbjct: 23 LGGPDIRIRDGRIAAIGALTPLPGERVIDATDCVVYPGWVNTHHH 67
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 29.3 bits (66), Expect = 4.8
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 144 SNQTQSCNKPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSI----ANIPPEKQSPSSPA 199
Q + EE D E D + + P+ P ++
Sbjct: 316 QPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQG 375
Query: 200 GDSQECGDIVRTRT 213
+ GDI R R
Sbjct: 376 SSTDPAGDIFRIRV 389
>gnl|CDD|234329 TIGR03722, arch_KAE1, universal archaeal protein Kae1. This
family represents the archaeal protein Kae1. Its
partner Bud32 is fused with it in about half of the
known archaeal genomes. The pair, which appears
universal in the archaea, corresponds to EKC/KEOPS
complex in eukaryotes. A recent characterization of the
member from Pyrococcus abyssi, as an iron-binding,
atypical DNA-binding protein with an apurinic lyase
activity, challenges the common annotation of close
homologs as O-sialoglycoprotein endopeptidase. The
latter annotation is based on a characterized protein
from the bacterium Pasteurella haemolytica [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 322
Score = 28.8 bits (65), Expect = 4.9
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 26 DYAKKTVTMESHPHLPGPPMASIHPCR-----HAEVMKKIIETVLEGGG 69
D + + S ++P IHP R HAEV K+I+ LE G
Sbjct: 16 DSDGEILANVSDTYVP--EKGGIHP-REAAEHHAEVAPKLIKEALEEAG 61
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 26.8 bits (60), Expect = 5.5
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 154 NSTEEEDDDDEEALDMEDF 172
S +EED+++++ DM+ F
Sbjct: 58 ESEDEEDEEEDDDDDMDGF 76
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 28.9 bits (65), Expect = 5.8
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 151 NKPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSP 198
N +EED+D + A D G D S + P SP P
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGE-DADPASASPSDPPSSSPGVP 195
>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3. The
M-Ras/R-Ras-like subfamily contains R-Ras2/TC21,
M-Ras/R-Ras3, and related members of the Ras family.
M-Ras is expressed in lympho-hematopoetic cells. It
interacts with some of the known Ras effectors, but
appears to also have its own effectors. Expression of
mutated M-Ras leads to transformation of several types
of cell lines, including hematopoietic cells, mammary
epithelial cells, and fibroblasts. Overexpression of
M-Ras is observed in carcinomas from breast, uterus,
thyroid, stomach, colon, kidney, lung, and rectum. In
addition, expression of a constitutively active M-Ras
mutant in murine bone marrow induces a malignant mast
cell leukemia that is distinct from the monocytic
leukemia induced by H-Ras. TC21, along with H-Ras, has
been shown to regulate the branching morphogenesis of
ureteric bud cell branching in mice. Most Ras proteins
contain a lipid modification site at the C-terminus,
with a typical sequence motif CaaX, where a = an
aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Ras proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 164
Score = 28.1 bits (63), Expect = 5.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 64 VLEGGGELGVHMYLIIFLK--FVQSVIPTIEYDFTQNFTVD 102
V+ GGG +G I F++ FV PTIE +T+ +D
Sbjct: 6 VVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEID 46
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 27.6 bits (62), Expect = 6.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 345 EEKQKIIENEQDEEGWV 361
E+++K E E DE+GWV
Sbjct: 37 EKEEKEKEAEPDEDGWV 53
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 28.8 bits (64), Expect = 7.7
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 40/161 (24%)
Query: 106 EDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKASNQTQSCNK------------- 152
E + Y + + + P P + RA + +N + ++
Sbjct: 482 EQAASTYGQTSRERQGIPEPPPGSHQPGN--RASQDLNNNNQKQEDESTNPIGKTSLRYQ 539
Query: 153 ---PNSTEEE-----DDDDEEALDMEDFEESGFLDEQDPSIANIPP-------------- 190
P E+E DDDD +E ++ G +EQ + + P
Sbjct: 540 ELTPVQEEDEPEDQTDDDDSSLPPLESDDDPGSDNEQGVDLTEVAPPAPVYRDEKEQDEI 599
Query: 191 --EKQSPSSPAGDSQ-ECGDIVRTRTYDLHITYDKYYQTPR 228
Q+P P G DI+R+ + + Y R
Sbjct: 600 PHPAQNPQDPTGSIGNVDSDILRSNSKPSAPLEETYMHLLR 640
>gnl|CDD|220387 pfam09763, Sec3, Exocyst complex component Sec3. This entry is the
conserved middle and C-terminus of the Sec3 protein.
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1
(glycine transporter protein 1). Sec3 is the exocyst
component that is closest to the plasma membrane docking
site and it serves as a spatial landmark in the plasma
membrane for incoming secretory vesicles. Sec3 is
recruited to the sites of polarised membrane growth
through its interaction with Rho1p, a small GTP-binding
protein.
Length = 691
Score = 28.4 bits (64), Expect = 8.0
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 18 QMYEDVSQDYAKKTVT-MESHPHLPGPPMASIHPCRHAEVMKKIIETVLEGGGELGVHMY 76
YE V++ + ++ V + + + S R + + L L ++
Sbjct: 158 ARYEKVTKKFLRRLVDFLNNKFKSAFDQLGS-DLDRFQTSGELSLPDHLNLLNNLLIYSG 216
Query: 77 LIIFLKFVQSVIPTIEYD-FTQNFTVD--QMYEDVSQD---YAKKTVTMESH 122
L++FLK V Y+ + + ++YE ++ Y KK++
Sbjct: 217 LMLFLKEVDR----ETYEALLKAYNASLSRLYEREIREFFEYLKKSLKSSGD 264
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 27.6 bits (61), Expect = 8.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 156 TEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSPAGDSQECGDIVRT 211
EEE +D E++LD ED E + ++ + A+ SS SQE I T
Sbjct: 34 DEEEMEDWEDSLDEEDEEAE---EVEEETAASSKAPS---SSSKSSSQETISIPPT 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.394
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,325,869
Number of extensions: 2028866
Number of successful extensions: 1856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1794
Number of HSP's successfully gapped: 42
Length of query: 420
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 321
Effective length of database: 6,546,556
Effective search space: 2101444476
Effective search space used: 2101444476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.8 bits)