RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4303
(420 letters)
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 160 bits (405), Expect = 4e-46
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 259 NSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWAS-GDESKAK 317
+ ++ T EYLTP+ +S F TG +TPEEFV AGD+L H PTW+W + +
Sbjct: 2 SMIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYR 61
Query: 318 SYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWVDTHHYD---------- 367
+LP NKQFLI + VPC +R +Q E I++ ++ D Y
Sbjct: 62 DFLPKNKQFLIIRKVPCDKRAEQCVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQST 121
Query: 368 ETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGKDIAIEDKISEISL 416
G + D I E+ D D + E + +++
Sbjct: 122 PAGGTKDSSIDDIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERY 170
Score = 126 bits (317), Expect = 2e-33
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 28/116 (24%)
Query: 9 KSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGP-PMASIHPCRHAEVMKKIIETVL-- 65
+ +PL+ +QM+ED+S DY KT T+E P SIHPC+HA VMK +++ V
Sbjct: 193 SNGSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVV 252
Query: 66 -------------------------EGGGELGVHMYLIIFLKFVQSVIPTIEYDFT 96
+ L V YLI+FLKF+ SV P+I++D+T
Sbjct: 253 RQRRRKELQEEQELDGVGDWEDLQDDIDDSLRVDQYLIVFLKFITSVTPSIQHDYT 308
Score = 67.6 bits (164), Expect = 1e-12
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 152 KPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSPAGDSQECGDIVRT 211
ST D D+++ + + E+D + D+ +
Sbjct: 117 HVQSTPAGGTKDSSIDDIDELIQDMEIKEEDEN--------DDTEEFNAKGGLAKDMAQE 168
Query: 212 RTYDLHITYDKYYQTPRLWLYGYNER 237
R YDL+I Y Y+ P++++ G+N
Sbjct: 169 RYYDLYIAYSTSYRVPKMYIVGFNSN 194
Score = 65.2 bits (158), Expect = 6e-12
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 100 TVDQMYEDVSQDYAKKTVTMESHPHLPGP-PMASIHPCR---AIKSKASNQTQSCNKPNS 155
+ +QM+ED+S DY KT T+E P SIHPC+ +K +
Sbjct: 199 SPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQRRRK 258
Query: 156 TEEEDDDDEEALDMEDFEESG 176
+E+ + + D ED ++
Sbjct: 259 ELQEEQELDGVGDWEDLQDDI 279
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 51/176 (28%)
Query: 260 SVKGTALG-VAEYLTPV---LKESKFRETGVV-TPEEFVAAG-----DHLVHH-----CP 304
S+ V +Y+ L K E +V + V +G L P
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 305 TWQWASGDESKA-----KSYLPPNKQFL-ITKNVP--CPRRCKQIDYCEEKQKIIENEQD 356
+ D+S+ K L + +FL + P +I +
Sbjct: 400 ----SGLDQSRIPFSERK--LKFSNRFLPVA--SPFHSH-------LLVPASDLIN-KDL 443
Query: 357 EEGWVDTHH-------YDETTGKDI-AIEDKISEISLDASTG----WVDTHHYDET 400
+ V + YD G D+ + ISE +D W T + T
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Score = 36.2 bits (83), Expect = 0.026
Identities = 58/295 (19%), Positives = 86/295 (29%), Gaps = 112/295 (37%)
Query: 31 TVTMESHPHLPGPP--MASIHPCRHAEVMKKIIETVLEGGGELGVHMYLIIFLKFVQSVI 88
++ +S + G P M SI +V + +T V + L+
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV---------- 371
Query: 89 PTIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAI-KSKASNQT 147
N + V V+ GPP + + K+KA +
Sbjct: 372 ---------N-GAKNL---V--------VS--------GPPQSLYGLNLTLRKAKAPSGL 402
Query: 148 QSCNKPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSP--SS---PAGDS 202
P S E L F + FL P +A SP S PA D
Sbjct: 403 DQSRIPFS--------ERKL---KF-SNRFL----P-VA-------SPFHSHLLVPASDL 438
Query: 203 QECGDIVRT----RTYDLHI----TYDKYYQTPRLWLYGYNERFKGK---ENLV--LISK 249
D+V+ D+ I T+D G + R E +V +I
Sbjct: 439 IN-KDLVKNNVSFNAKDIQIPVYDTFD-----------GSDLRVLSGSISERIVDCIIRL 486
Query: 250 ---WCNRMQSVINSV----KGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGD 297
W Q + G A G+ LT K+ TGV + AG
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGV-LTHRNKDG----TGV----RVIVAGT 532
Score = 31.6 bits (71), Expect = 0.68
Identities = 43/238 (18%), Positives = 69/238 (28%), Gaps = 84/238 (35%)
Query: 164 EEALDMEDFEESGFLDEQDPSIANI----PPEKQSPSSPAGDSQECGDIVRTR----TYD 215
A D + GF SI +I P G +R ++
Sbjct: 1647 NRA-DNHFKDTYGF------SILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFE 1694
Query: 216 LHITYDKYYQTPRLWLYGYNER-----FKGKEN-----------LVLISKWCNR-MQS-- 256
D +T ++ NE F+ ++ L L+ K ++S
Sbjct: 1695 --TIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 257 VINSVKGTA---LGVAEY--LTPVLKESKFRETGVVTPEEFVAAGDHLVHH--------C 303
+I + A LG EY L + V++ E V +V +
Sbjct: 1752 LIPADATFAGHSLG--EYAALASL--------ADVMSIESLV----EVVFYRGMTMQVAV 1797
Query: 304 PTWQWASGDESKAKSYLPPNKQFLITKNVPCPRRCKQIDYCEEKQKIIENEQDEEGWV 361
P DE +Y +I N P R E Q ++E GW+
Sbjct: 1798 P------RDELGRSNYG------MIAIN---PGRVAASFSQEALQYVVERVGKRTGWL 1840
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR
{Kluyveromyces marxianus}
Length = 152
Score = 32.1 bits (72), Expect = 0.17
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 213 TYDLHITYDKYYQTPRLWL 231
+LHI YD Y P +
Sbjct: 50 LLELHIYYDHVYHVPSIKF 68
Score = 27.4 bits (60), Expect = 5.7
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 5 NQGVKSRAPLTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRHAEVMKKIIETV 64
+ + S LT+ + +VT+ + + I+ C + +E
Sbjct: 76 EEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEM-KSVYYYINNCDTDANVGSDVEHY 134
Query: 65 LE 66
L
Sbjct: 135 LT 136
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.1 bits (64), Expect = 2.7
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 157 EEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSPAGDSQEC 205
E E ++DEE D ++ EE + E+ + + EC
Sbjct: 366 EFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPEC 414
Score = 28.8 bits (63), Expect = 3.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 154 NSTEEEDDDDEEALDMEDFEESGFLDEQDPSIANIPPEKQS 194
+ E+E++DD+ L+ +D E + D+ P KQS
Sbjct: 377 DEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS 417
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 2.9
Identities = 36/249 (14%), Positives = 68/249 (27%), Gaps = 91/249 (36%)
Query: 144 SNQTQSCNKPNSTEEEDD--DDEEALDMEDFEESGFLDEQDPSIANIPPEKQSP------ 195
+ + Q K + ED D+ + D++D +S E+ I
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 196 --SSPAGDSQE-CGDI-----------VRTRTYDLHITYDKY-YQTPRLWLYGYNERFKG 240
S Q+ ++ ++T + Y Q RL+ N+ F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFA- 127
Query: 241 KENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLV 300
K N+ +R+Q + L L E + P + V L+
Sbjct: 128 KYNV-------SRLQPYLK------------LRQALLELR--------PAKNV-----LI 155
Query: 301 HHCPTWQWASGDESKAKSYL-------------PPNKQFLITKNVPCPRRCKQIDYCEEK 347
G K+++ K F + + C
Sbjct: 156 D---------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----------LKNCNSP 195
Query: 348 QKIIENEQD 356
+ ++E Q
Sbjct: 196 ETVLEMLQK 204
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 27.9 bits (63), Expect = 3.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
F +S IPT+E + Q + D
Sbjct: 28 FRESYIPTVEDTYRQVISCD 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 28.3 bits (64), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
FV S PTIE FT+ TV+
Sbjct: 31 FVDSYDPTIENTFTKLITVN 50
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 28.3 bits (64), Expect = 4.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
F + PT+E +++ T+
Sbjct: 49 FSEGYDPTVENTYSKIVTLG 68
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 28.6 bits (64), Expect = 4.2
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 137 RAIKSKASNQTQSCNKPNSTEEEDDDDEEALDMEDFEESGFLDEQDPSI 185
+I+S+ + + P++ E E+DD + + FEE+ + S+
Sbjct: 701 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEA--MRFARRSV 747
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 27.8 bits (63), Expect = 4.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
FV PTIE + + +D
Sbjct: 28 FVDECDPTIEDSYRKQVVID 47
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 28.7 bits (63), Expect = 4.5
Identities = 23/166 (13%), Positives = 59/166 (35%), Gaps = 1/166 (0%)
Query: 45 MASIHPCRHAEVMKKIIET-VLEGGGELGVHMYLIIFLKFVQSVIPTIEYDFTQNFTVDQ 103
+ S P +V ++ +L + H L FL+ + S + I+ + F
Sbjct: 165 LCSSIPKWWQDVSMILVSCFILPIKQTVCHHDMLKYFLRMIPSSMGFIDTYLAKFFPNKN 224
Query: 104 MYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKASNQTQSCNKPNSTEEEDDDD 163
+Y + + + G + S+ + I Q + + +++D ++
Sbjct: 225 DTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIISIDVELQNELDELDDDVDDDDLEE 284
Query: 164 EEALDMEDFEESGFLDEQDPSIANIPPEKQSPSSPAGDSQECGDIV 209
+ D +D ++ D+ + + + + + E DI+
Sbjct: 285 VDLEDDDDLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDII 330
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 28.0 bits (63), Expect = 4.6
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 77 LIIFLK--FVQSVIPTIEYDFTQNFTVD 102
++ F+K F + IPTIE + Q + D
Sbjct: 25 VLRFVKGTFRDTYIPTIEDTYRQVISCD 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 27.9 bits (63), Expect = 4.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
FV PTIE + + +D
Sbjct: 29 FVDEYDPTIEDSYRKQVVID 48
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.6 bits (62), Expect = 5.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
FV PTIE + + +D
Sbjct: 46 FVDEYDPTIEDSYRKQVVID 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 27.4 bits (62), Expect = 5.5
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
FV+ PT + + +D
Sbjct: 29 FVEDYEPTKADSYRKKVVLD 48
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing,
cytoplasm, developmental protein, magnesium, nucleus,
polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Length = 274
Score = 27.8 bits (61), Expect = 6.2
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 145 NQTQSCNKPNSTEEEDDDDEEALDMEDFEESGF 177
N + C++ + + DD+ + L +F GF
Sbjct: 59 NDLEDCDQIHVDDVSSDDNGQDLSTYNFSADGF 91
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation,
purinergic signaling; 1.70A {Rattus norvegicus} PDB:
3zx2_A* 3zx0_A*
Length = 452
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 228 RLWLYGYNERFKGKENLVLISKWCNRMQSVINSVKGTALGVAEYLTPVLKESK 280
L++Y + + +V + C I+ +A YL +K S
Sbjct: 47 NLYIYKWPAEKENDTGVVQQLEECQVKGPGISKYAQKTDEIAAYLAECMKMST 99
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 27.6 bits (62), Expect = 6.5
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
FV+ PT + + +D
Sbjct: 39 FVEDYEPTKADSYRKKVVLD 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 27.5 bits (62), Expect = 6.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 83 FVQSVIPTIEYDFTQNFTVD 102
FV+ PT + + +D
Sbjct: 43 FVEDYEPTKADSYRKKVVLD 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 27.1 bits (61), Expect = 7.1
Identities = 4/27 (14%), Positives = 8/27 (29%), Gaps = 1/27 (3%)
Query: 77 LIIFLK-FVQSVIPTIEYDFTQNFTVD 102
IF + + ++ VD
Sbjct: 19 ARIFGGVEDGPEAEAAGHTYDRSIVVD 45
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 28.0 bits (63), Expect = 7.6
Identities = 7/54 (12%), Positives = 15/54 (27%)
Query: 90 TIEYDFTQNFTVDQMYEDVSQDYAKKTVTMESHPHLPGPPMASIHPCRAIKSKA 143
+ + + D + + K + + P +H R KS
Sbjct: 126 VVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPE 179
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 27.2 bits (61), Expect = 8.7
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 77 LIIFLK--FVQSVIPTIEYDFTQNFTVD 102
++ FL F+ PT+E + T+D
Sbjct: 45 VVRFLTKRFIWEYDPTLESTYRHQATID 72
>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A
{Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3
Length = 754
Score = 27.8 bits (61), Expect = 9.0
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 365 HYDETTGKDIAIEDKISEISLDASTGWVDTHHYDETTGK 403
+Y TG D + + +++ + S W D H+ + +
Sbjct: 438 NYTRYTGDDSYVLHEGAKVLTEISRFWADRVHFSKRNNQ 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.394
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,669,805
Number of extensions: 398915
Number of successful extensions: 829
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 42
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.4 bits)