BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4307
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FD5|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD5|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD6|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
pdb|3FD6|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
Length = 394
Score = 577 bits (1487), Expect = e-165, Method: Compositional matrix adjust.
Identities = 269/378 (71%), Positives = 323/378 (85%), Gaps = 6/378 (1%)
Query: 28 LALRRPFDPVVHDLDATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFM 87
++ R F+P ++LD +FRL RF +LKG GCKVPQ+VL KLLE LQ++ +D + F+
Sbjct: 3 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQ---FL 59
Query: 88 HMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVT 147
+PR+GIGMD+ VIPLRHGGLSLVQTTD+ YP+VDDPYMMG+IAC+NVLSDLYAMGVT
Sbjct: 60 GAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVT 119
Query: 148 ECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVAT 207
ECDN+LML+ VS KMT++ERD V+PL+++GFKD+A EAGT+VTGGQTV+NPW +GGVAT
Sbjct: 120 ECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVAT 179
Query: 208 TVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAY 267
TVCQPNE+I+PDNAV GDVLVLTKPLGTQVAV HQWLD PE+WN+IKL+V+++DV AY
Sbjct: 180 TVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAY 239
Query: 268 QRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIA 327
Q +M +MARLNR AA LMH +NAH ATD+TGFG+LGHAQ LAK Q+NEVSFVIHNLPV+A
Sbjct: 240 QEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLA 299
Query: 328 KMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQ---EGYQAWIIGIV 384
KMAAV+KACGNMF L+ G ETSGGLLICLPREQAA +C +I+ EG+QAWIIGIV
Sbjct: 300 KMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIV 359
Query: 385 EKGNRTARIIDKPRVIEV 402
EKGNRTARIIDKPR+IEV
Sbjct: 360 EKGNRTARIIDKPRIIEV 377
>pdb|2ZAU|A Chain A, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
pdb|2ZAU|B Chain B, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
pdb|2ZAU|C Chain C, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
Length = 311
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 44/310 (14%)
Query: 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLL 153
+ IG D+ V H G+ V T D P+V+DPY+ G I+ +N LSD+YAMG + L
Sbjct: 14 VSIGDDAGV--YEHNGIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNAL- 70
Query: 154 MLVAVSTKMTEKERDV-VIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQP 212
A+S E D+ + ++RG D EA T + GG T+ + G +C
Sbjct: 71 ---AISC-FNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPE 126
Query: 213 NEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMD 272
+YI A VG +L+LTKP+GT + + + + I+ E+D+ +A ++
Sbjct: 127 GKYITQSGAQVGQLLILTKPIGTGILIKGLK-----------EGILKEEDINEA----IE 171
Query: 273 SMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLP-------V 325
+M LN A LM +A TDVTGFGLLGHA + K+ +P +
Sbjct: 172 NMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENL 231
Query: 326 IAKMAAVAKACGNM-------------FQLLQGHSAETSGGLLICLPREQAAAYCKDIEK 372
+ K A N+ ++L+ TSGGLL + +E+ + K
Sbjct: 232 VKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEK-IDETAK 290
Query: 373 QEGYQAWIIG 382
+ WIIG
Sbjct: 291 ELEVNYWIIG 300
>pdb|2YYE|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus Complexed With Ampcpp
pdb|2YYE|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus Complexed With Ampcpp
pdb|2ZOD|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus
pdb|2ZOD|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus
Length = 345
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 44/310 (14%)
Query: 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLL 153
+ IG D+ V H G+ V T D P+V+DPY+ G I+ +N LSD+YAMG + L
Sbjct: 48 VSIGDDAGV--YEHNGIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNAL- 104
Query: 154 MLVAVSTKMTEKERDV-VIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQP 212
A+S E D+ + ++RG D EA T + GG T+ + G +C
Sbjct: 105 ---AISC-FNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPE 160
Query: 213 NEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMD 272
+YI A VG +L+LTKP+GT + + + + I+ E+D+ +A ++
Sbjct: 161 GKYITQSGAQVGQLLILTKPIGTGILIKGLK-----------EGILKEEDINEA----IE 205
Query: 273 SMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLP-------V 325
+M LN A LM +A TDVTGFGLLGHA + K+ +P +
Sbjct: 206 NMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENL 265
Query: 326 IAKMAAVAKACGNM-------------FQLLQGHSAETSGGLLICLPREQAAAYCKDIEK 372
+ K A N+ ++L+ TSGGLL + +E+ + K
Sbjct: 266 VKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEK-IDETAK 324
Query: 373 QEGYQAWIIG 382
+ WIIG
Sbjct: 325 ELEVNYWIIG 334
>pdb|3U0O|A Chain A, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
pdb|3U0O|B Chain B, The Crystal Structure Of Selenophosphate Synthetase From
E. Coli
Length = 347
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 126/267 (47%), Gaps = 41/267 (15%)
Query: 44 TFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGM----D 99
+ RL +++ G GCK+ +VL ET E A F+ P + +G D
Sbjct: 5 SIRLTQYSHGAGCGCKISPKVL----------ETILHSEQAKFVD---PNLLVGNETRDD 51
Query: 100 SAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVS 159
+AV L +G S++ TTDFF P+VD+P+ G+IA +N +SD++AMG +M +A+
Sbjct: 52 AAVYDLGNG-TSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMG----GKPIMAIAIL 106
Query: 160 TKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPD 219
K + + G + + +AG A+ GG ++ P I G+A T P E + +
Sbjct: 107 GWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPE-PIFGLAVTGIVPTERVKKN 165
Query: 220 N-AVVGDVLVLTKPLGTQVAVNAH-QWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARL 277
+ A G L LTKPLG V A + L +PE + + M R+
Sbjct: 166 STAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQG----------------LATEVMCRM 209
Query: 278 NRIAARLMHKYNAHGATDVTGFGLLGH 304
N A + TDVTGFGLLGH
Sbjct: 210 NIAGASFANIEGVKAMTDVTGFGLLGH 236
>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio
Cholerae
Length = 349
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 26/230 (11%)
Query: 174 MLRGFKDSALEAGTAVTGGQTVVNPWCTIG------GVATTVCQPNEYIVPDNAVVGDVL 227
++ G D L+AG A+ GG+T P G G V + E I VGD L
Sbjct: 126 VISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDAL 185
Query: 228 VLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDV--RKAYQRSMDSMARLNRI----A 281
+ G N + + R L VS+ D R A + + + +I
Sbjct: 186 IAVGSSGPH--SNGYSLV-------RKILEVSKADKNERLAGKTIGEHLLAPTKIYIKSG 236
Query: 282 ARLMHKYNAHGATDVTGFGLLGH-AQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMF 340
+L+ +++ H + +TG G + + L + K + PVI + + GN+
Sbjct: 237 LKLIAEHDIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQW---LQEKGNVT 293
Query: 341 QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRT 390
+ GL+I LP++QA A + + EG AW+IG + N
Sbjct: 294 THEMYRTFNCGVGLIIALPKDQANAAVA-LLQAEGETAWVIGEIAAANSN 342
>pdb|2Z01|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Geobacillus Kaustophilus
Length = 348
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 171 IPLMLRGFKDSALEAGTAVTGGQTVVNPWC------TIGGVATTVCQPNEYIVPDNAVVG 224
I +++G D +EAG A+ GG+T P + G A V + I + G
Sbjct: 118 IAAIVKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAG 177
Query: 225 DVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSM-DSMARLNRIAAR 283
D LV G N + + + + + KL S D++ + + + + + RI A+
Sbjct: 178 DALVGLPSSGLH--SNGYSLVRRI-VFEQAKL--SLDEIYEPLDVPLGEELLKPTRIYAK 232
Query: 284 LM----HKYNAHGATDVTGFGLL 302
L+ ++ G +TG GL+
Sbjct: 233 LLRSVRERFTIKGMAHITGGGLI 255
>pdb|2PT5|A Chain A, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|B Chain B, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|C Chain C, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|D Chain D, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
Length = 168
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 30 LRRPFDPVVHDLDATFRLCRFADLKGRGCKVPQEVLAKLLECLQ 73
L+RP D + + + ++ AD+K +G K P+EV+ ++L L+
Sbjct: 119 LKRPLDEIKNLFEERRKIYSKADIKVKGEKPPEEVVKEILLSLE 162
>pdb|1B48|A Chain A, Crystal Structure Of Mgsta4-4 In Complex With Gsh
Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
The Other: Evidence Of Signaling Across Dimer Interface
In Mgsta4-4
pdb|1B48|B Chain B, Crystal Structure Of Mgsta4-4 In Complex With Gsh
Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
The Other: Evidence Of Signaling Across Dimer Interface
In Mgsta4-4
Length = 221
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 63 EVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPL 122
E + LE +Q E Q + H + +P + I G+ L QT L
Sbjct: 28 EFEEEFLETREQYEKMQ--KDGHLLFGQVPLVEID-----------GMMLTQTRAILSYL 74
Query: 123 VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLML 175
+ GK V D+YA G +L+M++AV+ T KE++ L+L
Sbjct: 75 AAKYNLYGKDLKERVRIDMYADG---TQDLMMMIAVAPFKTPKEKEESYDLIL 124
>pdb|1GUK|A Chain A, Crystal Structure Of Murine Alpha-Class Gsta4-4
pdb|1GUK|B Chain B, Crystal Structure Of Murine Alpha-Class Gsta4-4
Length = 222
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 63 EVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPL 122
E + LE +Q E Q + H + +P + I G+ L QT L
Sbjct: 29 EFEEEFLETREQYEKMQ--KDGHLLFGQVPLVEID-----------GMMLTQTRAILSYL 75
Query: 123 VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLML 175
+ GK V D+YA G +L+M++AV+ T KE++ L+L
Sbjct: 76 AAKYNLYGKDLKERVRIDMYADG---TQDLMMMIAVAPFKTPKEKEESYDLIL 125
>pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|B Chain B, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|C Chain C, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|D Chain D, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|E Chain E, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|F Chain F, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|G Chain G, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|H Chain H, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUM|A Chain A, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|B Chain B, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|C Chain C, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|D Chain D, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|E Chain E, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|F Chain F, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|G Chain G, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|H Chain H, Human Glutathione Transferase A4-4 Without Ligands
pdb|3IK7|A Chain A, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|B Chain B, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|C Chain C, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|D Chain D, Human Glutathione Transferase A4-4 With Gsdhn
Length = 222
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 67 KLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDP 126
+ LE +Q QD H F +P + I G+ LVQT + + D
Sbjct: 33 EFLETKEQLYKLQDGNHLLFQQ--VPMVEID-----------GMKLVQTRSILHYIADKH 79
Query: 127 YMMGKIACSNVLSDLYAMGVTECDNLLML 155
+ GK L D+Y G + LL++
Sbjct: 80 NLFGKNLKERTLIDMYVEGTLDLLELLIM 108
>pdb|1OCX|A Chain A, E. Coli Maltose-O-Acetyltransferase
pdb|1OCX|B Chain B, E. Coli Maltose-O-Acetyltransferase
pdb|1OCX|C Chain C, E. Coli Maltose-O-Acetyltransferase
Length = 182
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 179 KDSALEAGTAVT-------GGQTVVNPWCTIGG---VATTVCQPNEYIVPDNAVVG 224
++S E G VT GG+ V+NP TIG VA+ + VPDN VVG
Sbjct: 119 RNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVG 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,075,070
Number of Sequences: 62578
Number of extensions: 483962
Number of successful extensions: 1093
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 13
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)