Query psy4307
Match_columns 412
No_of_seqs 328 out of 2127
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 22:10:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14105 selenophosphate synth 100.0 5.8E-62 1.3E-66 486.2 37.0 334 41-401 2-344 (345)
2 PRK00943 selenophosphate synth 100.0 3E-61 6.6E-66 480.8 35.1 320 43-393 4-344 (347)
3 TIGR00476 selD selenium donor 100.0 2E-61 4.3E-66 482.6 32.9 326 40-384 1-346 (347)
4 KOG3939|consensus 100.0 8.5E-60 1.8E-64 428.5 23.2 307 99-405 2-311 (312)
5 cd02195 SelD Selenophosphate s 100.0 1E-53 2.2E-58 416.7 31.0 287 47-384 1-287 (287)
6 COG0309 HypE Hydrogenase matur 100.0 2.8E-53 6E-58 408.1 23.3 321 53-409 6-334 (339)
7 COG0709 SelD Selenophosphate s 100.0 1.1E-52 2.3E-57 397.1 20.2 315 43-388 4-339 (346)
8 cd02197 HypE HypE (Hydrogenase 100.0 2.6E-49 5.7E-54 386.8 29.7 284 56-384 1-293 (293)
9 TIGR02124 hypE hydrogenase exp 100.0 3.6E-48 7.9E-53 383.2 33.2 287 94-410 18-316 (320)
10 COG0611 ThiL Thiamine monophos 100.0 2.7E-48 5.8E-53 376.2 30.0 281 93-403 22-309 (317)
11 cd06061 PurM-like1 AIR synthas 100.0 2.6E-48 5.6E-53 380.5 27.7 293 58-384 3-298 (298)
12 PRK05731 thiamine monophosphat 100.0 1.2E-46 2.6E-51 372.2 30.5 282 94-404 22-312 (318)
13 TIGR03267 methan_mark_2 putati 100.0 1.1E-46 2.4E-51 372.7 27.3 304 50-405 9-316 (323)
14 cd02691 PurM-like2 AIR synthas 100.0 3.4E-45 7.4E-50 364.1 31.6 300 56-406 11-324 (346)
15 TIGR01379 thiL thiamine-monoph 100.0 3.2E-45 6.9E-50 361.8 30.1 279 94-401 21-307 (317)
16 cd02194 ThiL ThiL (Thiamine-mo 100.0 7.3E-45 1.6E-49 355.1 29.2 263 94-385 21-291 (291)
17 TIGR00878 purM phosphoribosyla 100.0 4.1E-44 8.9E-49 355.7 30.1 280 94-386 34-331 (332)
18 PRK05385 phosphoribosylaminoim 100.0 1.9E-43 4.1E-48 350.5 27.0 276 94-384 34-327 (327)
19 cd02196 PurM PurM (Aminoimidaz 100.0 7.9E-43 1.7E-47 341.7 26.8 275 95-385 2-297 (297)
20 PLN02557 phosphoribosylformylg 100.0 4.1E-41 8.9E-46 335.4 28.3 277 94-389 83-375 (379)
21 cd02192 PurM-like3 AIR synthas 100.0 1.9E-41 4.2E-46 329.3 21.5 250 93-383 31-283 (283)
22 TIGR01736 FGAM_synth_II phosph 100.0 6.1E-40 1.3E-44 356.3 21.0 304 53-399 30-344 (715)
23 PRK14090 phosphoribosylformylg 100.0 7.2E-39 1.6E-43 335.0 26.9 291 53-400 28-327 (601)
24 cd00396 PurM-like AIR (aminoim 100.0 7.1E-39 1.5E-43 300.9 24.0 215 112-383 2-222 (222)
25 PRK01213 phosphoribosylformylg 100.0 1.7E-38 3.8E-43 344.7 22.4 306 53-400 42-356 (724)
26 cd02204 PurL_repeat2 PurL subu 100.0 3.2E-38 6.8E-43 303.9 21.3 253 99-384 1-264 (264)
27 cd02203 PurL_repeat1 PurL subu 100.0 5.3E-38 1.2E-42 309.7 22.2 265 111-399 27-309 (313)
28 TIGR01736 FGAM_synth_II phosph 100.0 3.9E-35 8.4E-40 318.7 27.3 269 94-398 414-694 (715)
29 PRK01213 phosphoribosylformylg 100.0 1.3E-34 2.8E-39 314.6 27.5 270 94-396 424-702 (724)
30 cd02193 PurL Formylglycinamide 100.0 5.5E-35 1.2E-39 282.8 21.7 248 111-383 2-271 (272)
31 COG2144 Selenophosphate synthe 100.0 3.2E-33 6.8E-38 261.8 16.7 257 94-395 40-301 (324)
32 COG0046 PurL Phosphoribosylfor 100.0 1E-29 2.2E-34 267.0 16.7 310 53-403 54-375 (743)
33 COG0150 PurM Phosphoribosylami 100.0 1.9E-28 4.1E-33 235.7 19.4 283 94-389 37-337 (345)
34 COG1973 HypE Hydrogenase matur 99.9 2E-26 4.4E-31 218.6 17.5 282 94-406 108-400 (449)
35 TIGR01735 FGAM_synt phosphorib 99.9 3.6E-24 7.9E-29 241.3 24.7 308 53-396 214-592 (1310)
36 COG0046 PurL Phosphoribosylfor 99.9 6.5E-24 1.4E-28 223.5 24.4 259 94-387 444-718 (743)
37 PRK05297 phosphoribosylformylg 99.9 1.4E-24 3.1E-29 245.3 19.8 278 94-395 250-585 (1290)
38 TIGR01739 tegu_FGAM_synt herpe 99.9 6.2E-23 1.3E-27 230.9 29.1 253 110-399 593-863 (1202)
39 PHA03366 FGAM-synthase; Provis 99.9 3.8E-22 8.3E-27 225.3 29.1 253 109-399 688-962 (1304)
40 TIGR01735 FGAM_synt phosphorib 99.9 7.1E-22 1.5E-26 222.9 29.0 267 96-399 691-988 (1310)
41 PRK05297 phosphoribosylformylg 99.9 6.7E-22 1.5E-26 223.7 27.8 266 97-399 672-968 (1290)
42 PLN03206 phosphoribosylformylg 99.9 1.6E-20 3.5E-25 210.8 26.9 265 92-399 679-973 (1307)
43 KOG0237|consensus 99.9 1.5E-21 3.3E-26 197.0 14.7 278 94-388 470-771 (788)
44 PF00586 AIRS: AIR synthase re 99.8 2.5E-21 5.4E-26 158.3 5.0 92 97-194 1-96 (96)
45 PF02769 AIRS_C: AIR synthase 99.8 2.4E-18 5.2E-23 151.8 15.5 145 222-389 1-147 (153)
46 TIGR01857 FGAM-synthase phosph 99.8 1.1E-18 2.3E-23 194.8 15.0 258 109-399 311-591 (1239)
47 PLN03206 phosphoribosylformylg 99.8 5.3E-19 1.2E-23 198.6 12.5 264 109-397 285-587 (1307)
48 TIGR01857 FGAM-synthase phosph 99.8 5.4E-17 1.2E-21 181.3 24.0 227 98-387 677-919 (1239)
49 PRK14090 phosphoribosylformylg 99.6 8.7E-15 1.9E-19 154.2 15.9 180 94-323 381-570 (601)
50 KOG1907|consensus 99.0 7.4E-08 1.6E-12 102.5 24.7 246 123-405 723-998 (1320)
51 TIGR01739 tegu_FGAM_synt herpe 98.5 2.5E-06 5.3E-11 97.6 17.3 195 172-396 223-449 (1202)
52 KOG1907|consensus 97.8 7E-05 1.5E-09 80.5 9.6 264 111-395 305-607 (1320)
53 PHA03366 FGAM-synthase; Provis 97.5 0.0014 3.1E-08 75.8 14.2 197 169-395 310-537 (1304)
54 PF12818 Tegument_dsDNA: dsDNA 95.6 0.7 1.5E-05 45.1 16.1 192 169-389 58-281 (282)
55 COG5561 Predicted metal-bindin 36.3 21 0.00046 28.6 1.4 36 34-69 17-52 (101)
56 PRK12858 tagatose 1,6-diphosph 28.5 98 0.0021 31.1 5.1 92 94-191 70-161 (340)
57 COG0490 Putative regulatory, l 27.5 74 0.0016 28.4 3.5 33 201-233 111-147 (162)
58 PRK12403 putative aminotransfe 27.1 65 0.0014 33.6 3.7 54 173-236 243-296 (460)
59 PF13128 DUF3954: Protein of u 25.6 1.2E+02 0.0026 21.6 3.6 21 388-408 9-29 (50)
60 PF05225 HTH_psq: helix-turn-h 25.6 62 0.0014 22.2 2.2 22 167-188 5-29 (45)
61 PF00849 PseudoU_synth_2: RNA 23.4 1E+02 0.0022 26.6 3.8 44 341-385 42-85 (164)
62 PF07829 Toxin_14: Alpha-A con 22.7 46 0.001 19.7 0.9 13 51-63 9-21 (26)
63 PF11823 DUF3343: Protein of u 21.1 3E+02 0.0064 20.6 5.4 26 353-379 42-67 (73)
No 1
>PRK14105 selenophosphate synthetase; Provisional
Probab=100.00 E-value=5.8e-62 Score=486.16 Aligned_cols=334 Identities=35% Similarity=0.616 Sum_probs=267.4
Q ss_pred CCcccceeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCC
Q psy4307 41 LDATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFY 120 (412)
Q Consensus 41 ~~~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~ 120 (412)
+.++|+||+|++++|||||+|++.|+++|+++..... +++ ...++|||||+++.+ +..+++|||+|+
T Consensus 2 ~~~~~~~~~~~~~~gc~~k~~~~~l~~~l~~~~~~~~---~~~--------~~~g~gDDaAvi~~~--~~~lv~t~D~f~ 68 (345)
T PRK14105 2 MEEKIKLTEMVKLHGUACKLPSTELENLVKGIILEED---LKH--------TKVGLGDDAAVIIKN--GLAIVKTVDVFT 68 (345)
T ss_pred CccceehhhhhccCccccccCHHHHHHHHHhCCCCcc---ccc--------cccCCCCceEEEeeC--CeEEEEEecCCC
Confidence 3467999999999999999999999999998754320 111 125889999999875 568999999999
Q ss_pred CCCCChhHHHHHHHHHHHhHhhhcCcc-chHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc
Q psy4307 121 PLVDDPYMMGKIACSNVLSDLYAMGVT-ECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW 199 (412)
Q Consensus 121 p~~~dp~~~G~~av~~~vsDIaamGa~-P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~ 199 (412)
|.+.+||++||+|+++|+||||||||+ |. +++.++.+|+++++ ++++++++|+.++|+++|++|+||||..+++
T Consensus 69 ~~~~~p~~~G~~av~~nlSDiaAmGa~~p~-~~~~~l~lP~~~~~----~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~~~ 143 (345)
T PRK14105 69 PIVDDPYIQGKIAACNSTSDVYAMGLSEII-GVLVILGIPPELPI----EVAKEMLQGFQDFCRENDTTIIGGHTILNPW 143 (345)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHcCCccHH-HHHhhhcCCCCCCH----HHHHHHHHHHHHHHHHhCCEEEeeeeccCCC
Confidence 999999999999999999999999997 78 57778999988877 6899999999999999999999999999998
Q ss_pred eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHH
Q psy4307 200 CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNR 279 (412)
Q Consensus 200 ~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~ 279 (412)
+.++++++|..+++++++++++||||.|++||++|.+++.... .+. ..+.+. ..++++...+..+.+.+.|.+.+.
T Consensus 144 ~~l~~svtg~g~~~~~i~r~ga~~GD~I~vTg~lG~~~~~~l~-~l~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 219 (345)
T PRK14105 144 PLIGGAVTGVGKEEDILTKAGAKEGDVLILTKPLGTQSAMALS-RVP--EEFEDL-IDITKEEKEYIINKAIELMTTSNR 219 (345)
T ss_pred CEEEEEEEEEEcccceeeCCCCCCCCEEEEeCCChHHHHHHHH-hcc--hhhhhh-ccCCHHHHHHHHHHHHHHHHhhhH
Confidence 8888888888877889999999999999999999997643222 111 111110 023444433333334444444433
Q ss_pred HHHHHHh-------hcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccc
Q psy4307 280 IAARLMH-------KYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSG 352 (412)
Q Consensus 280 ~~~~l~~-------~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsG 352 (412)
.....++ +..+|||||||+|||+++|+|||++|+++++|+ +||+++.+.++|+.++ +.+++|++++++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~a~~DiSdgGL~~~L~ela~aS~v~i~i~--~iPi~~~~~~~~~~~~--~~l~~g~~~~ssG 295 (345)
T PRK14105 220 YALLALREAEEEVGEKIANAMTDVTGFGILGHSQEMAEQSNVEIEIS--TLPVIKGTPELSSLFG--HALLDGYGAETAG 295 (345)
T ss_pred HHHHHHHHhhhccccCCeeEEEcCCCchHHHHHHHHHhhCCCeEEEE--ccCCchhHHHHHHHhc--ccccCCCCCcccC
Confidence 3222222 235899999999999999999999999998885 9999999999999875 4566899999999
Q ss_pred eEEEEEccccHHHHHHHHHhcCCCceeEEEEEEe-CCceEEEEcCCeEEE
Q psy4307 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEK-GNRTARIIDKPRVIE 401 (412)
Q Consensus 353 glLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~-~~~~v~i~~~g~~~~ 401 (412)
+|||++|+++++++++.+++. |+++++||+|++ +.+..++..+.+.++
T Consensus 296 gLl~tv~~e~~~~~~~~l~~~-g~~~~~IG~V~~~g~~~~~~~~~~~~~~ 344 (345)
T PRK14105 296 GLLISVKPEYKDKLIDKLEKN-NVYAFEVGKVVKNGVGKAKLSENVKILE 344 (345)
T ss_pred eEEEEecHHHHHHHHHHHHhC-CCCceEEEEEEeCCCceEEEcCCCceee
Confidence 999999999999999999997 999999999976 444444445555554
No 2
>PRK00943 selenophosphate synthetase; Provisional
Probab=100.00 E-value=3e-61 Score=480.85 Aligned_cols=320 Identities=28% Similarity=0.425 Sum_probs=264.0
Q ss_pred cccceeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCCCC
Q psy4307 43 ATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPL 122 (412)
Q Consensus 43 ~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~p~ 122 (412)
++||||+|+|++|||||+|+++|++++.+..... .+++ +++| ++.|||||++++++ +..+|+|+|+|+|.
T Consensus 4 ~~~~~~~~~~~~gc~~K~~~~~l~~~~~~~~~~~---~~~~-v~~g-----~~~gdDaavi~~~~-~~~lv~t~D~~~p~ 73 (347)
T PRK00943 4 EAIRLTQYSHGAGCGCKISPKVLETILASEQAKF---VDPN-LLVG-----NETRDDAAVYDLND-GTGIISTTDFFMPI 73 (347)
T ss_pred cceehhccccCCccccccCHHHHHHHHHhccccC---CCCC-eeec-----CCCCCceEEEEeCC-CcEEEEEcccCCCC
Confidence 3599999999999999999999999999754311 1222 6666 78899999999986 56799999999999
Q ss_pred CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCC-CChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCcee
Q psy4307 123 VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTK-MTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCT 201 (412)
Q Consensus 123 ~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~-~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~ 201 (412)
+.+||++||+|+++|+||||||||+|+ ++++++++|.. .++ ++++++++|+.++|+++|++|+||||..+++++
T Consensus 74 ~~~p~~~G~~Av~~~~sDiaAmGa~P~-~~l~~l~lp~~~~~~----~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~~~~~ 148 (347)
T PRK00943 74 VDDPFDFGRIAATNAISDIYAMGGKPI-MAIAILGWPINKLPP----EVAREVLEGGRAACRQAGIPLAGGHSIDAPEPI 148 (347)
T ss_pred CCCHHHHHHHHHHHHhhHhhccCccHH-hHhheeecCcccCcH----HHHHHHHHHHHHHHHHcCCceecccccCCCCce
Confidence 999999999999999999999999999 57788999865 455 689999999999999999999999999999999
Q ss_pred EeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHH
Q psy4307 202 IGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIA 281 (412)
Q Consensus 202 i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~ 281 (412)
+++|++|.+++++++++++++|||.|++||++|.+++..+.+ . ..++++..+. +.+.+.++++..
T Consensus 149 i~~t~~G~~~~~~~l~~~~ak~GD~Iivtg~iG~~~~~~~~~--~---------~~~~~~~~~~----~~~~~~~l~~~~ 213 (347)
T PRK00943 149 FGLAVTGVVPPERVKRNATAQAGDKLFLTKPLGIGILTTAEK--K---------SKLKPEHYGL----AIEAMCQLNRPG 213 (347)
T ss_pred EEEEEEEEEcCCceeeCCCCCCCCEEEEeCCccHHHHHHHHH--h---------cCCCHHHHHH----HHHHHHHhhhHH
Confidence 999999999988999999999999999999999976643321 1 1133333322 334444555444
Q ss_pred HHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcC------Chhhhcc-----------
Q psy4307 282 ARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACG------NMFQLLQ----------- 344 (412)
Q Consensus 282 ~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~------~~~~l~~----------- 344 (412)
..++....+|+|||+|+|||+++|+|||++|++|++|++++||+.+.++++|+... .++.++.
T Consensus 214 ~~l~~~~~v~a~~DiT~gGL~~~L~ela~~s~~g~~Id~d~iPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (347)
T PRK00943 214 ADFAKLPGVHAMTDVTGFGLLGHLLEMCQGAGLTARVDYAAVPLLPGVEEYIAQGCVPGGTGRNFASYGHLIGELPDEQR 293 (347)
T ss_pred HHHhccCCCeEEEecCCchHHHHHHHHHHhcCCeEEEecccCCCChhHHHHHHcCCCCchhhhHHHHhhccccccCHHHH
Confidence 45555567999999999999999999999999999999999999999999998632 1111111
Q ss_pred --CCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCC-ceEEE
Q psy4307 345 --GHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN-RTARI 393 (412)
Q Consensus 345 --~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~-~~v~i 393 (412)
-+++++|||||+++||++++++++.+++. |+++++||+|++++ ++.++
T Consensus 294 ~~~~~~~~sgGll~~v~~~~a~~v~~~l~~~-g~~a~vIG~V~~~~~~~~~~ 344 (347)
T PRK00943 294 ALLCDPQTSGGLLVAVAPEAEAEVLAIAAEH-GIELAAIGELVEARGGRARV 344 (347)
T ss_pred hhccCcccCccEEEEeCHHHHHHHHHHHHhc-CCCeEEEEEEEcCCCCceeE
Confidence 14678999999999999999999999997 99999999998754 44554
No 3
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=100.00 E-value=2e-61 Score=482.64 Aligned_cols=326 Identities=48% Similarity=0.766 Sum_probs=266.4
Q ss_pred CCCcccceeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC
Q psy4307 40 DLDATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF 119 (412)
Q Consensus 40 ~~~~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~ 119 (412)
.++++||||+|++++|||||+|+++|+++|+++..... .+++ +++| +++||||||+++++ +..+++|||+|
T Consensus 1 ~~~~~~~l~~~~~~~gc~~K~~~~~L~~~l~~~~~~~~--~~~~-~~~g-----~~~gDDaAvi~~~~-~~~lv~ttD~~ 71 (347)
T TIGR00476 1 EGDKSIRLTRLVELKGCGCKVPPDVLQKLLKGLQENHF--VDDN-QLVG-----AVMGDDAVIYLRHN-GLSLVQTTDYI 71 (347)
T ss_pred CCCcceehhcccCCCcccCCcCHHHHHHHHHhCCcccc--cCCc-eeec-----CCCCCCeEEEEecC-CeEEEEEeccC
Confidence 36888999999999999999999999999998643211 0222 5555 67999999999875 56799999999
Q ss_pred CCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc
Q psy4307 120 YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW 199 (412)
Q Consensus 120 ~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~ 199 (412)
+|.+.+||++||+|+++|+||||||||+|+++++.++..|+++++ ++++++++|+.++|+++|++|+||||..+|+
T Consensus 72 ~p~~~~p~~~G~~av~~~lsDiaamGa~P~~~l~~~~~~~~~~~~----~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~ 147 (347)
T TIGR00476 72 TPIVDDPYMMGRIAAANALSDIYAMGGTPIDAMLILLGVSNKLTI----EVMREVIQGFKDACREAGTSLTGGHTILNPW 147 (347)
T ss_pred CCCccCHHHHHHHHHHHHHHhhhhcCchHHHHHhhccCCCCCCCH----HHHHHHHHHHHHHHHHcCCCeEeeeeecCCc
Confidence 999999999999999999999999999999533333434556676 6899999999999999999999999999999
Q ss_pred eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHH
Q psy4307 200 CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNR 279 (412)
Q Consensus 200 ~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~ 279 (412)
+++++|++|.++++++++++++||||.|++||++|.+.+..+++++....+. .+.++...++++.+++.+.++++
T Consensus 148 ~~i~~t~~G~~~~~~~i~~~~ak~GD~Iiltg~lG~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 222 (347)
T TIGR00476 148 PVFGGAVTGVCPEEEVITPSGAQVGDVLILTKPLGTQVAVAVHKWLDIPKDL-----SITKEEVELAINEAIENMARLNR 222 (347)
T ss_pred CEEEEEEEEEECccceecCCCCCCCCEEEEECCccHHHHHHHHHHhhccccc-----ccCcHHHHHHHHHHHHHHhHHHH
Confidence 9999999999988899999999999999999999997765566554321110 12222222333445556666766
Q ss_pred HHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChh----hh--cc---------
Q psy4307 280 IAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMF----QL--LQ--------- 344 (412)
Q Consensus 280 ~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~----~l--~~--------- 344 (412)
....++.+..+|+|||||+|||+++|+|||++|++|++|++++||+.+.++++|+.++.++ .+ .+
T Consensus 223 ~~~~~~~~~~v~a~~DiT~gGL~~~L~~ia~~sg~g~~I~~~~iPi~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~ 302 (347)
T TIGR00476 223 KAAGLMHTFNAHAATDITGFGILGHAQNMAKNSNVEARIVIENLPVLAKMEELSKLCGNPFGLMHGTCPEGGGLLSCLPR 302 (347)
T ss_pred HHHHHHhhCCceEEEeccCccHHHHHHHHHhcCCCeEEEEeCCCCCchhHHHHHHcCCCChHHHhhhhhccCCcccCCCH
Confidence 5555666667999999999999999999999999999999999999999999999876422 11 11
Q ss_pred -----CCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEE
Q psy4307 345 -----GHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIV 384 (412)
Q Consensus 345 -----~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V 384 (412)
-++++++|++++++|++.+.++++.+++. ++++++||+|
T Consensus 303 ~~~~~~~~~~~~g~~l~~v~~~~~~~~~~~~~~~-~~~~~~ig~v 346 (347)
T TIGR00476 303 EKAALLCDPIKSGGYLFGVQAEIIGIVEKTATER-IIDKPRIGEV 346 (347)
T ss_pred HHHHHhcCchhccCcccccCHHHHHHHHHHHHhc-CCCCCeEEEe
Confidence 14689999999999999999999999997 9999999997
No 4
>KOG3939|consensus
Probab=100.00 E-value=8.5e-60 Score=428.53 Aligned_cols=307 Identities=79% Similarity=1.262 Sum_probs=293.1
Q ss_pred CeeEEecCCCCceeEEEecCCCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHH
Q psy4307 99 DSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGF 178 (412)
Q Consensus 99 Daavi~~~~~~~~lv~ttD~~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi 178 (412)
||+||++++++..||+|||+|+|+++|||.+|++|+++.+||+||||.+.+..+++.|.++..++++|++..+.-+++|+
T Consensus 2 d~~viplrh~gl~lvqttdffyp~vddpy~mgriacanvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~pl~~~gf 81 (312)
T KOG3939|consen 2 DCCVIPLRHGGLLLVQTTDFFYPLVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIPLIIQGF 81 (312)
T ss_pred CceEEeeccCCeEEEEeeceeeeccCChHHhhHHHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhchhhHHHHHHh
Confidence 89999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhc-Cchhhhhhccc
Q psy4307 179 KDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLD-QPERWNRIKLI 257 (412)
Q Consensus 179 ~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~-~~~~~~~l~~~ 257 (412)
++++++.|+++.||+|..+||+++++.+.-++.+++++.++++.|||++++|||+|.+.+.++++|+. .+++|++++..
T Consensus 82 kdaa~e~gt~v~ggqtv~npw~~igGVatsVcq~ne~i~pdnAvpGdvlvLTkplg~qvAv~~h~wi~~~~ek~~~~~l~ 161 (312)
T KOG3939|consen 82 KDAAEEAGTPVTGGQTVINPWCIIGGVATSVCQPNEIIMPDNAVPGDVLVLTKPLGGQVAVNAHQWIDNQPEKWNKLKLE 161 (312)
T ss_pred HHHHHhcCCceecCeeecCcceeeccccccccCccceecccCCCCcceEEEeccCCceeehHHHHHHhcCcceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999988999997 58899998888
Q ss_pred CCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcC
Q psy4307 258 VSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACG 337 (412)
Q Consensus 258 l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~ 337 (412)
++.++++++|+++..+|+++|+.++.+++++.+|+++|||+|||++|...+++..+..+.+.+.++|+...+.++++.+|
T Consensus 162 vs~~die~ay~~a~~~M~~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~i~~LPiI~km~~vska~G 241 (312)
T KOG3939|consen 162 VSDEDIEKAYEEAMKSMARLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQIHKLPIIAKMAEVSKACG 241 (312)
T ss_pred ecHHHHHHHHHHHHhhhhhhchhhhhhhhhccccccccccccchhhhHHHHHHHhhccceeeeccChhhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCC--CceeEEEEEEeCCceEEEEcCCeEEEeCCC
Q psy4307 338 NMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEG--YQAWIIGIVEKGNRTARIIDKPRVIEVPAK 405 (412)
Q Consensus 338 ~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g--~~a~vIG~V~~~~~~v~i~~~g~~~~~~~~ 405 (412)
..+.|++|-.+|||||||++.|.+++++|++++++..+ -++|+||.|++++..++|+++.+.||+++.
T Consensus 242 ~~f~l~qGts~ETsGGlLIclP~eqaakfcaei~s~k~gegqAWIIGiVekgn~tArIidkp~iIEV~~~ 311 (312)
T KOG3939|consen 242 NMFKLRQGTSAETSGGLLICLPREQAAKFCAEIKSPKNGEGQAWIIGIVEKGNSTARIIDKPRIIEVAPQ 311 (312)
T ss_pred ccceeccCCCccCCCceEEEccHHHHHHHHHHhcCCccCCCceEEEEEEecCCcceEecCCceEEEecCC
Confidence 88999999999999999999999999999999997521 269999999999999999999999999874
No 5
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=1e-53 Score=416.70 Aligned_cols=287 Identities=43% Similarity=0.640 Sum_probs=237.6
Q ss_pred eeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCCCCCCCh
Q psy4307 47 LCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDP 126 (412)
Q Consensus 47 lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~p~~~dp 126 (412)
||+|..|.|||||+|+++|+++|.++....+ ++ ++++ +++||||||+++++ +..+++|||.|+|.+.+|
T Consensus 1 ~~~~~~~~~~~gk~~~~~l~~~~~~~~~~~~---~~--~~~~-----~~~gdDaavi~~~~-~~~lv~stD~~~~~~~~p 69 (287)
T cd02195 1 LTSFMKCAGCGAKVGPGVLSQLLAGLPLPTD---PN--LLVG-----LGTGDDAAVYRLPG-GLALVQTTDFFPPIVDDP 69 (287)
T ss_pred CCCcccCCCccCeeCHHHHHHHHHhCCCCCC---cc--eeec-----CCCCCcEEEEEeCC-CcEEEEEecCCCCCCCCH
Confidence 6899999999999999999999766655331 21 4443 89999999999864 568999999998888999
Q ss_pred hHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEE
Q psy4307 127 YMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVA 206 (412)
Q Consensus 127 ~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~ 206 (412)
|.+||++++.|+|||+||||+|. ++++++++|+...+ +.+++++++++|+.++|+++|++|+||||..+|++.+++|+
T Consensus 70 ~~~G~~av~~~~sDiaa~Ga~P~-~~~~~l~lp~~~~~-~~~~~l~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~i~~t~ 147 (287)
T cd02195 70 YLFGRIAAANALSDIYAMGAKPL-SALAIVTLPRKLPA-LQEEVLREILAGGKDKLREAGAVLVGGHTIEGPEPKYGLSV 147 (287)
T ss_pred HHHHHHHHHHHHHHHHhcCchHH-HHHHHhcCCCccch-hhHHHHHHHHHHHHHHHHHcCCcEEeeeeccCCCcEEEEEE
Confidence 99999999999999999999999 68889999977621 12378999999999999999999999999999999999999
Q ss_pred EEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy4307 207 TTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMH 286 (412)
Q Consensus 207 iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~ 286 (412)
+|+++++++++++++++||.|++||++|.+.+.+.++. . .++......+ ++.+.++......+++
T Consensus 148 ~G~~~~~~~~~~~~a~~GD~I~ltg~lG~~~~~~~~~~--~---------~~~~~~~~~~----~~~~~~~~~~~~~~~~ 212 (287)
T cd02195 148 TGLVHPNKILRNSGAKPGDVLILTKPLGTGILFAAEMA--G---------LARGEDIDAA----LESMARLNRAAAELLR 212 (287)
T ss_pred EEEEcchheecCCCCCCCCEEEEcCCchHHHHHHHHHh--c---------cCChHHHHHH----HHHHHhhhHHHHHHHH
Confidence 99999888999999999999999999998655433321 0 1222222222 2223333333455566
Q ss_pred hcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHH
Q psy4307 287 KYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAY 366 (412)
Q Consensus 287 ~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~ 366 (412)
+..+++|||+|+|||+++|+||+++|++|++|++++||+. +++|+||+++++++++++
T Consensus 213 ~~~v~a~~DiS~gGL~~~L~~~a~~sg~g~~Id~~~ip~~----------------------~~~Ggll~~v~~e~~~~~ 270 (287)
T cd02195 213 KYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPLL----------------------QTSGGLLAAVPPEDAAAL 270 (287)
T ss_pred hcCCeEeEecCCcHHHHHHHHHHhhcCCeEEEEeCCCceE----------------------eccCceEEEEcHHHHHHH
Confidence 6679999999999999999999999999999999999985 257889999999999999
Q ss_pred HHHHHhcCCCceeEEEEE
Q psy4307 367 CKDIEKQEGYQAWIIGIV 384 (412)
Q Consensus 367 ~~~l~~~~g~~a~vIG~V 384 (412)
.+.+++. |+++++||+|
T Consensus 271 ~~~~~~~-g~~~~~IG~v 287 (287)
T cd02195 271 LALLKAG-GPPAAIIGEV 287 (287)
T ss_pred HHHHHhC-CCCeEEEEEC
Confidence 9999987 8999999985
No 6
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-53 Score=408.05 Aligned_cols=321 Identities=22% Similarity=0.221 Sum_probs=256.5
Q ss_pred CCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCC--CCCCChhHHH
Q psy4307 53 LKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFY--PLVDDPYMMG 130 (412)
Q Consensus 53 ~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~--p~~~dp~~~G 130 (412)
.||-|||+++++|++++++... .+ + +.+ .+..|+|++.+++.+ ..+++|||.|+ |....-.++|
T Consensus 6 ~~g~gGk~~~~li~~~il~~~~-~~---~---~~v-----~~~~g~D~~~i~l~~--~~la~tTD~~~i~P~ff~~~diG 71 (339)
T COG0309 6 AHGAGGKLMQELINKVILPNFG-RR---D---VNV-----GLANGEDAAIIDLGD--GVLAFTTDPFVIDPLFFPGGDIG 71 (339)
T ss_pred eccCCchhHHHHHHHHHHhccC-cc---c---ccc-----CcccccceeeeecCC--ceEEEEeCCeEecccccCCCceE
Confidence 3466799999999999998665 21 2 222 388999999999985 38999999863 4444444799
Q ss_pred HHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc----eeEeEEE
Q psy4307 131 KIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW----CTIGGVA 206 (412)
Q Consensus 131 ~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~----~~i~~t~ 206 (412)
|+||+.++|||+.|||+|+ |+...|.+|++++. +.|++|++.|.++|+++|++|++|||.+++. ++++.|+
T Consensus 72 ~lAV~gt~NDlav~GA~P~-~l~~~lil~eg~~~----e~l~~i~~si~e~a~~~Gv~IvtGdTkV~~~~~~~~vi~tt~ 146 (339)
T COG0309 72 KLAVHGTANDVAVSGAKPR-YLSVGLILPEGLPI----EDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINTTG 146 (339)
T ss_pred EEEEEEehhhhhhcCCCce-eeeEeEecCCCCCH----HHHHHHHHHHHHHHHHcCCeEEccCceeecCCCCCcEEEeee
Confidence 9999999999999999999 68888999999998 6899999999999999999999999998875 6788899
Q ss_pred EEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy4307 207 TTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMH 286 (412)
Q Consensus 207 iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~ 286 (412)
+|+..++..++++++||||.|++||++|.|++. +...+.+. .++..+..+....+. .+.........+...+
T Consensus 147 iG~~~~~~~v~~~~~~~GD~vI~tg~~g~hga~--ila~~~~~---~l~~~l~sD~~~~~~--~~~~~l~~~~~~~~~~- 218 (339)
T COG0309 147 IGIIDKEILVSPSGARPGDAVIVTGTIGIHGAS--ILAHRFGE---ELETELGSDCAPLAK--LVKALLSVVGEALAAA- 218 (339)
T ss_pred EEeecCCcccccCCCCCCCEEEEcCChhHHHHH--HHHHhcch---hhccchhhhHHHHHH--HHHHHhhcchhhhhhh-
Confidence 999998888999999999999999999999874 32222211 133345544332222 2222222222221111
Q ss_pred hcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHH
Q psy4307 287 KYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAY 366 (412)
Q Consensus 287 ~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~ 366 (412)
++||||.|+|||+++|+|||++|++|++|+.++||++++++.+|+.+|++ |+...++|.||++|++++++++
T Consensus 219 ---vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv~~eVr~vce~lGiD-----Pl~~anEG~lv~~V~~~~a~~~ 290 (339)
T COG0309 219 ---VTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEVRGVCELLGLD-----PLELANEGKLVIAVPPEHAEEV 290 (339)
T ss_pred ---hhhccCCchhHHHHHHHHHHHHcCCeEEEeeccccccHHHHHHHHHhCCC-----HHHhhcCceEEEEECHHHHHHH
Confidence 88999999999999999999999999999999999999999999999985 4445579999999999999999
Q ss_pred HHHHHhcCC-CceeEEEEEEeCCceEEEE-cCCeEEEeCCCCCCC
Q psy4307 367 CKDIEKQEG-YQAWIIGIVEKGNRTARII-DKPRVIEVPAKEKDG 409 (412)
Q Consensus 367 ~~~l~~~~g-~~a~vIG~V~~~~~~v~i~-~~g~~~~~~~~~~~~ 409 (412)
+++|+++ + +++.+||+|+++++.+.+. ..|.+..+.+|..|+
T Consensus 291 l~~L~~~-~~~~A~iIGeV~~~~~~v~l~~~~G~~r~l~~P~~Dp 334 (339)
T COG0309 291 LEALRSH-GLKDAAIIGEVVEEKGGVGLETAGGGKRILEPPEGDP 334 (339)
T ss_pred HHHHHhc-CCccceeEEEEeccCCcEEEEecCCceEecCCCCcCc
Confidence 9999998 8 8999999999975534444 456566778877665
No 7
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=397.15 Aligned_cols=315 Identities=29% Similarity=0.443 Sum_probs=272.7
Q ss_pred cccceeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCCCC
Q psy4307 43 ATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPL 122 (412)
Q Consensus 43 ~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~p~ 122 (412)
..+|||+++|+.|||||+++.+|++++.+.....+ +++ .++| ...+||++|+++++ +..+|.|+|+|.|+
T Consensus 4 ~~irlt~~~hg~g~gck~sp~vL~qil~~~~a~~~---~~~-~lvg-----n~~~dda~vy~ig~-g~~iIsT~df~mpi 73 (346)
T COG0709 4 EAIRLTQYSHGAGCGCKISPKVLEQILHGTPAKPD---FAK-LLVG-----NETGDDAAVYDLGN-GHSIISTTDFFMPI 73 (346)
T ss_pred cceeeeecccCCccccccCHHHHHHHHhcCcCCCC---chh-Hhhc-----ccccCcceeEEecC-CcEEEEecceeeec
Confidence 56899999999999999999999999997555432 232 4555 46799999999987 78999999999999
Q ss_pred CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCC-CChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCcee
Q psy4307 123 VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTK-MTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCT 201 (412)
Q Consensus 123 ~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~-~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~ 201 (412)
++|||++|++|+++++||+++||++|+- .+.++++|.+ ++. +.+++++.|-.+.|++.++++.|||+..+++|.
T Consensus 74 vddp~dfG~IaAtNaIsDv~amgg~pi~-AiAI~g~~~~~l~~----~i~~ei~~gg~~~~rea~i~lagGhsIdapEP~ 148 (346)
T COG0709 74 VDDPFDFGRIAATNAISDVFAMGGKPIM-AIAILGFPNDLLDK----EIAQEVIEGGRDACREAGIALAGGHSIDAPEPI 148 (346)
T ss_pred ccCcchhhhhhhcccccchhhcCCcchh-hhhhcCCcccccCH----HHHHHHHHhhHHHHHHhCccccCCcccCCCCcc
Confidence 9999999999999999999999999994 7788999954 454 689999999999999999999999999999999
Q ss_pred EeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHH
Q psy4307 202 IGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIA 281 (412)
Q Consensus 202 i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~ 281 (412)
++..++|.++.++..+.+++++|+.|+||||+|.++..++++- ..+.++. +.++++.|+++|+..
T Consensus 149 fGlav~G~~~~~k~~~n~~a~~G~~lilTKPlG~gil~ta~k~-----------~~L~~e~----~~~ale~M~~lN~~~ 213 (346)
T COG0709 149 FGLAVTGIVPTGKVKRNSTAKAGCKLILTKPLGIGILTTAEKK-----------GLLKEEH----KGLALENMCTLNKIG 213 (346)
T ss_pred cceeeecccchhhhcccccccCCcEEEEecCcccceehhhhhh-----------hccCHHH----HHHHHHHHhhhhHHH
Confidence 9999999999999999999999999999999999988777741 1244443 445778899999988
Q ss_pred HHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHc------CCh--------------hh
Q psy4307 282 ARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKAC------GNM--------------FQ 341 (412)
Q Consensus 282 ~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~------~~~--------------~~ 341 (412)
+..+...+++||+|||+|||+||++|||+.|++++++..+.||..+.++.+.+.+ ..| +.
T Consensus 214 ~~~~~~~gv~A~TDVTGfGLlghl~E~ae~s~v~~~lf~~~ip~l~~~e~~~~~g~iP~gt~~n~~s~~~~~~~~l~e~~ 293 (346)
T COG0709 214 AQFAPDFGVAAMTDVTGFGLLGHLKEMAEGAGVDARLFDSPIPFLDGVEFYIENGIIPGGTARNFGSYGIFAGKDLPEEQ 293 (346)
T ss_pred HHhCccCCcceeecccCchHHHHHHHHHhhcCCcEEEeeccCCCcHHHHHHHHcCCCcCccccchhHHHHhccccccHHH
Confidence 8999999999999999999999999999999999999999999999888777654 011 11
Q ss_pred hccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCC
Q psy4307 342 LLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN 388 (412)
Q Consensus 342 l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~ 388 (412)
..--.|+|||||||+++.++...++.+..++. +++++.||++.+..
T Consensus 294 ~~lL~dpqtsgglLiav~~~~~~~~~~i~~e~-~~~~~~i~~l~~k~ 339 (346)
T COG0709 294 KLLLCDPQTSGGLLIAVVPEGKGEGLEIAPEL-GIQLIIIGELVAKQ 339 (346)
T ss_pred HHHhcCCCCCCceEEEEecccccchheecchh-ccceehhhhHHhhc
Confidence 11147899999999999998888899988887 99999999987643
No 8
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=2.6e-49 Score=386.78 Aligned_cols=284 Identities=22% Similarity=0.255 Sum_probs=225.4
Q ss_pred ccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCC--CCCCChhHHHHHH
Q psy4307 56 RGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFY--PLVDDPYMMGKIA 133 (412)
Q Consensus 56 cggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~--p~~~dp~~~G~~a 133 (412)
.|||+++++|++++.++..+ ..+++||||||+++++ ..+++|||++. |.+..++++||+|
T Consensus 1 ~~gk~~~~~i~~~~~~~~~~----------------~~~~~~DDaavi~~~~--~~lv~ttD~~~~~~~~~~~~~iG~~a 62 (293)
T cd02197 1 SGGKLMQELIEELFLKAFDN----------------PILEVLEDAAALLVGG--GRLAFTTDSFVVSPLFFPGGDIGKLA 62 (293)
T ss_pred CCCcccHHHHHHHHHHhcCC----------------cccccCCceEEEecCC--ceEEEEecCccccCcccCchhHHHHH
Confidence 37999999999999865331 1267889999999863 57999999763 2233457889999
Q ss_pred HHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC-----ceeEeEEEEE
Q psy4307 134 CSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP-----WCTIGGVATT 208 (412)
Q Consensus 134 v~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~-----~~~i~~t~iG 208 (412)
+++|+|||+||||+|+ ++++++++|+++++ ++++++++||.++|+++|++|+||||+.++ .+++++|++|
T Consensus 63 v~~~~sDiaamGa~P~-~~~~~l~lp~~~~~----~~l~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~~~~~~i~~t~~G 137 (293)
T cd02197 63 VCGTVNDLAMMGAKPL-YLSLGFILEEGFPL----EDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKADGIFINTTGIG 137 (293)
T ss_pred HHhhHHHHHHcCCcch-hheEEEECCCCCCH----HHHHHHHHHHHHHHHHcCCEEEeceeEeccCCccCceEEEEEEEE
Confidence 9999999999999999 68889999988776 799999999999999999999999999765 3789999999
Q ss_pred EecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhh-
Q psy4307 209 VCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHK- 287 (412)
Q Consensus 209 ~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~- 287 (412)
++++.+++.+++++|||.|++||++|.+++.. + .++. + . .++.. ... ...+ +.+....+++.
T Consensus 138 ~~~~~~~~~r~~a~~GD~i~vtG~~G~~~~~l-~-~~~~-~-~-----~~~~~-~~~----~~~~---~~~~~~~~~~~~ 200 (293)
T cd02197 138 VIPRGVIISPSNIRPGDKIIVSGTIGDHGAAI-L-AARE-G-L-----GFETD-IES----DCAP---LNGLVEALLEAG 200 (293)
T ss_pred EEcCCccccccCCCCCCEEEEeCCccHHHHHH-H-hccc-C-C-----Ccchh-hhh----hhhh---hhHHHHHHHhcC
Confidence 99988889999999999999999999976532 1 1111 1 0 01111 000 0111 11122233333
Q ss_pred cCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHH
Q psy4307 288 YNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYC 367 (412)
Q Consensus 288 ~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~ 367 (412)
..++||||||+|||+++|+|||++|++|++|+.++||+++++.++|+.++.+ ++..+++|+|||++|++++++++
T Consensus 201 ~~v~a~~DiSdgGL~~~L~~~a~~sg~g~~I~~~~iP~~~~~~~~~~~~~~~-----~~~~~~~G~ll~tv~~~~~~~i~ 275 (293)
T cd02197 201 PGIHAMRDPTRGGLAAVLNEIARASGVGIEIEEEAIPVREEVRGACEMLGLD-----PLYLANEGKFVAIVPPEDAEEVL 275 (293)
T ss_pred CCceEEEcCCcchHHHHHHHHHHHcCCeEEEeeccCCCCHHHHHHHHHhCcC-----HHHHhcCCcEEEEECHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999887654 22244678999999999999999
Q ss_pred HHHHhc-CCCceeEEEEE
Q psy4307 368 KDIEKQ-EGYQAWIIGIV 384 (412)
Q Consensus 368 ~~l~~~-~g~~a~vIG~V 384 (412)
+.++++ .|+++++||+|
T Consensus 276 ~~l~~~~~gi~~~vIG~v 293 (293)
T cd02197 276 EALRSHPLGKEAAIIGEV 293 (293)
T ss_pred HHHHhCCCCCCeEEEEeC
Confidence 999863 17899999986
No 9
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=100.00 E-value=3.6e-48 Score=383.20 Aligned_cols=287 Identities=18% Similarity=0.171 Sum_probs=226.7
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCCC--CCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFFY--PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVI 171 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~~--p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l 171 (412)
+++||||||+++++ ..+++|||++. |.+.+++++||+|+++|+|||+||||+|+ +++++|++|+.+++ +++
T Consensus 18 ~~~gdDaavi~~~~--~~lv~ttD~~~~~p~~~~~~~iG~~av~~n~sDiaamGa~P~-~~~~~l~lp~~~~~----~~l 90 (320)
T TIGR02124 18 LAAMEDAAVLELSG--GRLAFSTDSFVVDPLFFPGGDIGKLAVCGTVNDVAVSGAKPL-YLSCGFILEEGFPI----EDL 90 (320)
T ss_pred cCCCCceEEEeeCC--CeEEEEecCCccCCcccCcccHHHHHHHHHHHHHHHcCCcch-hhEEEEEcCCCCCH----HHH
Confidence 68899999999973 57999999763 22333456899999999999999999999 57889999988876 789
Q ss_pred HHHHHHHHHHHHHcCCeEEcccccccC-----ceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhc
Q psy4307 172 PLMLRGFKDSALEAGTAVTGGQTVVNP-----WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLD 246 (412)
Q Consensus 172 ~~i~~Gi~~a~~~~gv~ivGG~T~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~ 246 (412)
+++++|+.++|+++|++|+||||+.++ ++.+++|++|.+++++++++++++|||.|++||++|.++++..+ +.
T Consensus 91 ~~~~~Gi~~a~~~~gi~ivGGdt~~~~~~~~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~I~ltg~~G~~g~~l~~--~~ 168 (320)
T TIGR02124 91 ERIVKSMAEAARKAGVKIVTGDTKVVEKGKADGIFINTTGIGVIPSGIPISAHNLQPGDKIIVSGTIGDHGAAILA--VR 168 (320)
T ss_pred HHHHHHHHHHHHHcCCEEEeeeeEEccCCCCCcEEEEEEEEEEEcCCccccccCCCCCCEEEEeCCccHHHHHHHH--hh
Confidence 999999999999999999999999754 47899999999998889999999999999999999998765322 21
Q ss_pred CchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhh-cCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCC
Q psy4307 247 QPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHK-YNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPV 325 (412)
Q Consensus 247 ~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~-~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv 325 (412)
.... ++... .. ..++ +.+....++.. ..+++|||+|+|||+++|+|||++|++|++|+.++||+
T Consensus 169 ~~~~-------~~~~~-~~----~~~~---~~~~~~~~~~~~~~v~a~~DiSdgGL~~~L~ela~~s~~g~~I~~~~ipi 233 (320)
T TIGR02124 169 EGLG-------FETNL-ES----DCAP---LNGLVETLLNAGPAVHAMRDATRGGLAAVLNEWAQASGVGIVIEEEKIPV 233 (320)
T ss_pred cccC-------CCccc-hh----hhhh---hHHHHHHHHhccCCceEEECCCCccHHHHHHHHHHHcCCeEEEecccCCC
Confidence 1101 11110 00 0011 11122233333 25899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHh--cCCCceeEEEEEEeCCce-EEEEc-CCeEEE
Q psy4307 326 IAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEK--QEGYQAWIIGIVEKGNRT-ARIID-KPRVIE 401 (412)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~--~~g~~a~vIG~V~~~~~~-v~i~~-~g~~~~ 401 (412)
+++++++|+.++.+ ++..+++|+||+++++++++++++.+++ + ++++++||+|++++++ +++.. +++...
T Consensus 234 ~~~~~~~~~~~~~~-----~~~~~~~G~ll~~v~~~~~~~~~~~~~~~~~-gi~~~~IG~v~~~~~~~v~~~~~~~~~~~ 307 (320)
T TIGR02124 234 KEEVKGACELLGLD-----PLYLANEGKLVLAVPPEAAEKVLEILKSHPY-GKDAAIIGEVVERKEGRVVLKTAYGGKRI 307 (320)
T ss_pred CHHHHHHHHHhCCC-----HHHHhcCCcEEEEECHHHHHHHHHHHHhCCC-CCCEEEEEEEEcCCCCEEEEEecCCCEEE
Confidence 99999999877653 2334578899999999999999999987 4 7899999999986653 55543 456667
Q ss_pred eCCCCCCCC
Q psy4307 402 VPAKEKDGE 410 (412)
Q Consensus 402 ~~~~~~~~~ 410 (412)
+.+|..|.-
T Consensus 308 l~~~~~d~~ 316 (320)
T TIGR02124 308 LDMPSGELL 316 (320)
T ss_pred CCCCCCCCc
Confidence 888877653
No 10
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-48 Score=376.21 Aligned_cols=281 Identities=24% Similarity=0.312 Sum_probs=234.6
Q ss_pred CCCCCCCeeEEecCCCCceeEEEecC-----CCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhH
Q psy4307 93 RIGIGMDSAVIPLRHGGLSLVQTTDF-----FYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKER 167 (412)
Q Consensus 93 ~~~~GdDaavi~~~~~~~~lv~ttD~-----~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~ 167 (412)
..++|||||+++.++ +..+|+|||+ |+|....|+++||++++.|+|||+||||+|.+ ++.++++|++.++
T Consensus 22 ~~~~GDDaA~v~~~~-~~~lvvttD~lv~~~hF~~~~~p~d~G~Ka~a~NlSDlAAMGa~P~~-~~lsl~lP~~~d~--- 96 (317)
T COG0611 22 VLGIGDDAALVDAPE-GQRLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMGARPKA-FLLSLGLPPDLDE--- 96 (317)
T ss_pred cccCCCceEEEecCC-CceEEEEecccccccccCCCCCHHHHHHHHHHHHHHHHHHcCCCchh-heeeeeCCCCCCH---
Confidence 379999999999987 5589999999 56666669999999999999999999999994 6778999999988
Q ss_pred hhHHHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcC
Q psy4307 168 DVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQ 247 (412)
Q Consensus 168 ~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~ 247 (412)
++++.+.+||.++|+.||+++|||||..+ ..++++|++|.+++++.+.|++|||||.|++||++|.+.++..+ +..
T Consensus 97 -~~~~~~~~Gi~e~~~~y~~~lIGGDt~~~-~l~is~t~iG~~~~~~~l~R~gAkpGD~v~vtG~lG~saagl~l--l~~ 172 (317)
T COG0611 97 -EWLEALADGIFEAAKKYGVKLIGGDTNRG-PLSISVTAIGVLPKGRALLRSGAKPGDLVAVTGTLGRSAAGLEL--LLN 172 (317)
T ss_pred -HHHHHHHHHHHHHHHHcCCeEeccccCCC-ceEEEEEEEEecCCCchhhccCCCCCCEEEEcCCCchhHHHHHH--Hhc
Confidence 79999999999999999999999999999 78899999999999999999999999999999999999885443 322
Q ss_pred chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChH
Q psy4307 248 PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIA 327 (412)
Q Consensus 248 ~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~ 327 (412)
. ..++......++...|.+++ .....++. .++||+|+|| ||+.+|++|+++|++|++|+.+.||+.+
T Consensus 173 ~---------~~~~~~~~l~~r~~~P~Prv--~~g~~l~~-~a~aa~DiSD-GL~~dL~~i~~aS~vg~~I~~~~lp~~~ 239 (317)
T COG0611 173 V---------LGPEDEEELIERHLRPTPRV--ELGLALAK-LASAAMDISD-GLAADLGHIARASGVGIVIDEDLLPLSD 239 (317)
T ss_pred c---------cCcchhHHHHHHhcCCCCCh--hHHHHHHH-HHHHheecch-hHHHHHHHHHHHcCCeEEEEeccCCCcH
Confidence 0 11111112233344555554 22333444 6889999999 9999999999999999999999999999
Q ss_pred HHHHHHHHcCC--hhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEEEeC
Q psy4307 328 KMAAVAKACGN--MFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVIEVP 403 (412)
Q Consensus 328 ~~~~~~~~~~~--~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~~~~ 403 (412)
.+.+.+...+. +|.|.+|+||| |+||+|++..+++...++.. | .++||+|+++.+ ..+..+|+.+.+.
T Consensus 240 ~~~~~~~~~~~~~~~aL~gGEDyE----Lvft~p~~~~~~~~~~~~~~-~--~~~IG~v~~~~g-~~~~~dgk~~~~~ 309 (317)
T COG0611 240 AVLEALDELGDPLEWALSGGEDYE----LVFTVPEENREALLDALRSL-G--VTIIGRVTEGEG-VVVLVDGKELTLI 309 (317)
T ss_pred HHHHHHhccCCHHHHHhccCCceE----EEEEeCchhHHHHHHHHHhc-C--ceEEEEEeecCC-eEEEecCceeeee
Confidence 99988886543 47888999999 99999999999999999986 6 899999997766 5666677775443
No 11
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=2.6e-48 Score=380.51 Aligned_cols=293 Identities=24% Similarity=0.292 Sum_probs=234.1
Q ss_pred ccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCCCCCCChhHHHHHHHHHH
Q psy4307 58 CKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNV 137 (412)
Q Consensus 58 gK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~p~~~dp~~~G~~av~~~ 137 (412)
||+++..|.+.+++..... ++. +.+| +++|||||+++++ +..+++|||+ ++..||++||++++.|
T Consensus 3 gk~~e~~l~~~~~~~~~~~----~~~-~~~g-----~~~gdDaav~~~~--~~~lv~s~D~---~~~~~~~iG~~av~~~ 67 (298)
T cd06061 3 GKLPPEFLKRLILKNLGAD----RDE-VLVG-----PGGGEDAAVVDFG--GKVLVVSTDP---ITGAGKDAGWLAVHIA 67 (298)
T ss_pred CCCCHHHHHHHHHhhcCCC----Ccc-cccC-----CCccceeEEEeeC--CcEEEEEcCc---eeeCCcceeeehhhhh
Confidence 8999999999998754422 111 3333 5689999999986 4579999995 4556999999999999
Q ss_pred HhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc---eeEeEEEEEEecCCc
Q psy4307 138 LSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW---CTIGGVATTVCQPNE 214 (412)
Q Consensus 138 vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~---~~i~~t~iG~~~~~~ 214 (412)
+|||+||||+|. ++++++++|+.+++ ++++++++|+.++|+++|++++||||..++. +++++|++|.+++.+
T Consensus 68 ~sDi~amGa~P~-~~~~~l~~p~~~~~----~~l~~~~~Gi~~~~~~~gi~ivGG~t~~~~~~~~~~i~vt~~G~~~~~~ 142 (298)
T cd06061 68 ANDIATSGARPR-WLLVTLLLPPGTDE----EELKAIMREINEAAKELGVSIVGGHTEVTPGVTRPIISVTAIGKGEKDK 142 (298)
T ss_pred HHHHHhcCCCCc-eeEEEEEcCCCCCH----HHHHHHHHHHHHHHHHcCCeEEeeeeEEcCCCCccEEEEEEEEEEcccc
Confidence 999999999999 68889999988776 6899999999999999999999999998774 799999999998888
Q ss_pred cccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEe
Q psy4307 215 YIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGAT 294 (412)
Q Consensus 215 ~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~ 294 (412)
++.+++++|||.|++||++|.+.++..+ +.. .+.+...++++.++.... ....+.+ ..+..++.++.+++||
T Consensus 143 ~~~~~~a~~Gd~i~ltg~~G~~~~~l~~--~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~a~~ 214 (298)
T cd06061 143 LVTPSGAKPGDDIVMTKGAGIEGTAILA--NDF---EEELKKRLSEEELREAAK-LFYKISV--VKEALIAAEAGVTAMH 214 (298)
T ss_pred cccccCCCCCCEEEEeCCchHHHHHHHH--Hhh---HHHHhhhcCHHHHHHHHH-hhhhhhh--HHHHHHhhhcCeeEEE
Confidence 8999999999999999999998764322 111 111222344444433222 1111111 1223344454799999
Q ss_pred cCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcC
Q psy4307 295 DVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQE 374 (412)
Q Consensus 295 DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~ 374 (412)
|||+|||+++|+|||++|++|++|++++||+.+++.++|+.++.+ ++..+++|+||+++|+++++++++.++++
T Consensus 215 DiSdGGL~~~l~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~-----~~~~~~~G~ll~~v~~~~~~~~~~~~~~~- 288 (298)
T cd06061 215 DATEGGILGALWEVAEASGVGLRIEKDKIPIRQETKEICEALGID-----PLRLISSGTLLITVPPEKGDELVDALEEA- 288 (298)
T ss_pred eCCccHHHHHHHHHHHHcCCeEEEEecccCcCHHHHHHHHHcCCC-----HHHhhcCCcEEEEEChHHHHHHHHHHHHC-
Confidence 999999999999999999999999999999999999999987754 22345688999999999999999999987
Q ss_pred CCceeEEEEE
Q psy4307 375 GYQAWIIGIV 384 (412)
Q Consensus 375 g~~a~vIG~V 384 (412)
++++++||+|
T Consensus 289 g~~~~~IG~v 298 (298)
T cd06061 289 GIPASVIGKI 298 (298)
T ss_pred CCCeEEEEeC
Confidence 8999999986
No 12
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=100.00 E-value=1.2e-46 Score=372.17 Aligned_cols=282 Identities=25% Similarity=0.317 Sum_probs=224.1
Q ss_pred CCCCCCeeEEecCCCCceeEEEecC------CCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDF------FYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKER 167 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~------~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~ 167 (412)
+++||||||+++++ +..+++|||+ |+|.+.+||++||+++++|+|||+||||+|+ +++.++++|++++.
T Consensus 22 ~~~gdDaavi~~~~-~~~lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~Ga~P~-~~~~~l~~p~~~~~--- 96 (318)
T PRK05731 22 LGIGDDAALLGPPP-GQRLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPA-AFLLALALPKDLDE--- 96 (318)
T ss_pred CCCCCcEEEeccCC-CCeEEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcc-eEEEEEEcCCCCCH---
Confidence 68899999999875 5689999995 4477899999999999999999999999999 67788999977765
Q ss_pred hhHHHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcC
Q psy4307 168 DVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQ 247 (412)
Q Consensus 168 ~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~ 247 (412)
.+++++++||.++|+++|++++||||..++++++++|++|++++.+++.+++++|||.|++||++|.+..+..+ +..
T Consensus 97 -~~l~~i~~Gi~~~~~~~g~~ivGG~t~~~~~~~i~vt~iG~~~~~~~~~~~~a~~Gd~i~ltg~~G~~~~g~~~--~~~ 173 (318)
T PRK05731 97 -AWLEALADGLFELADRYGAELIGGDTTRGPDLSISVTAIGDVPGGRALRRSGAKPGDLVAVTGTLGDSAAGLAL--LLN 173 (318)
T ss_pred -HHHHHHHHHHHHHHHHhCCeEECcccCCCCCcEEEEEEEEEcCCCCcccccCCCCCCEEEEECCccHHHHHHHH--Hhc
Confidence 57999999999999999999999999999999999999999988788999999999999999999998775332 322
Q ss_pred chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChH
Q psy4307 248 PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIA 327 (412)
Q Consensus 248 ~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~ 327 (412)
.. .++.....+..+....+..++. ....++++ +++|||+|+ ||+++|+|||++|++|++|++++||+.+
T Consensus 174 ~~-------~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~-v~a~~DiS~-GL~~~l~ema~~s~~g~~i~~~~ipi~~ 242 (318)
T PRK05731 174 GL-------RVPDADAAALISRHLRPQPRVG--LGQALAGL-ASAAIDISD-GLAADLGHIAEASGVGADIDLDALPISP 242 (318)
T ss_pred CC-------CCChhhHHHHHHHhcCCCCCHH--HHHHHhhh-chhheechH-hHHHHHHHHHHHCCCeEEEeHHhCCCCH
Confidence 11 1222221222222233333332 23334443 899999999 8999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-h--hhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEEEeCC
Q psy4307 328 KMAAVAKACGNM-F--QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVIEVPA 404 (412)
Q Consensus 328 ~~~~~~~~~~~~-~--~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~~~~~ 404 (412)
++.++ .++.+ + .+.++.++ +||+++|+++++++++.++++ |+++++||+|++++ .+..++++++++.
T Consensus 243 ~~~~~--~~~~~~~~~~~~~g~~~----~ll~~v~~~~~~~~~~~l~~~-g~~~~~IG~v~~~~---~~~~~~~~~~~~~ 312 (318)
T PRK05731 243 ALREA--AEGEDALRWALSGGEDY----ELLFTFPPENRGALLAAAGHL-GVGVTIIGRVTEGE---GVVVDGEPVTLDL 312 (318)
T ss_pred HHHHH--hcCCCHHHHHhcCCCce----eEEEEECHHHHHHHHHHHHhc-CCCceEEEEEEcCc---eEecCCCEeecCC
Confidence 88876 44544 2 23333333 399999999999999999997 99999999999864 4445666655544
No 13
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=1.1e-46 Score=372.68 Aligned_cols=304 Identities=18% Similarity=0.290 Sum_probs=228.9
Q ss_pred ccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC--CCCCCChh
Q psy4307 50 FADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF--YPLVDDPY 127 (412)
Q Consensus 50 ~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~--~p~~~dp~ 127 (412)
+....||+||+++..|.+++.++..... ++ + .+++||||||+++++ +..+|+|+|++ ++.+.+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-------~~g~GdDaavi~~~~-~~~lvistD~~~~~~~~~~p~ 75 (323)
T TIGR03267 9 LRSFEGVTRKHPIKDVVEILEPLDVTYE--GN---V-------IVDFGDDAAAIKIGG-DDILLLAADGIWGKLLDADPW 75 (323)
T ss_pred HHhCccchhhcCHHHHHHHhccccccCC--CC---e-------eeccCCceEEEEcCC-CCEEEEEecCcCCcccccChh
Confidence 4456799999999999999987654321 11 1 257899999999875 56799999997 35668999
Q ss_pred HHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEccccccc-CceeEeEEE
Q psy4307 128 MMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVN-PWCTIGGVA 206 (412)
Q Consensus 128 ~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~-~~~~i~~t~ 206 (412)
++||+|+++|+|||+||||+|. +++++|++|+ + ++++++++|+.++|+++|++|+||||..+ +.+.+++|+
T Consensus 76 ~~G~~av~~nlsDiaamGa~P~-~~~~~L~~~~---~----~~l~~~~~Gi~~a~~~~gi~ivGGdT~~~~~~~~i~vt~ 147 (323)
T TIGR03267 76 WAGYCAVLVNVNDIAAMGGKPV-GMVNVLSIND---V----DVCREVLEGMREGAWKFGVPVVGGHTHPDTPYNALDVAI 147 (323)
T ss_pred HhhHHhhhhhhhhHHhcCCEeh-hHhhhhcCCC---H----HHHHHHHHHHHHHHHHcCCCEEccccCCCCCcceeeEEE
Confidence 9999999999999999999999 5788898872 3 57999999999999999999999999864 346789999
Q ss_pred EEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy4307 207 TTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMH 286 (412)
Q Consensus 207 iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~ 286 (412)
+|.+++++++++++++|||.|++|++++..... .+. +. +.. .....++. +.+. .+....+..
T Consensus 148 iG~~~~~~~~~r~~a~~GD~I~vtg~l~g~~~~-~~~-~~----~~~-~~~~~~~~--------~~~~---~~~~~~~~~ 209 (323)
T TIGR03267 148 VGIAKEDCIIRSDTAKPGDLIIFAIDLDGRPYP-SFP-LN----WDT-TTMKSPDY--------LRAQ---MDAVVEIAE 209 (323)
T ss_pred EEEEcCcceeeCCCCCCCCEEEEEEcCCCcccc-ccc-cC----ccc-hhccCHHH--------HHHH---HHHHHHHHH
Confidence 999988889999999999999999988643210 111 00 100 00011111 1111 112223334
Q ss_pred hcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHH
Q psy4307 287 KYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAY 366 (412)
Q Consensus 287 ~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~ 366 (412)
+..++||||+|+|||+++|+|||++|++|++|++++||+.+.+.. ++.+ .+. .++++|+++|+++++++
T Consensus 210 ~~~v~a~~DiSdGGL~~~L~ema~~s~~G~~I~~~~iP~~~~~~~-~~~l----~~~------~g~~ll~tv~~e~~~~~ 278 (323)
T TIGR03267 210 RKLVKAGKDISNPGLIGTLGMLLEASRVGAEVDLESIPKPEDVDM-VTWL----KMY------PGSGFVLTADPENVREI 278 (323)
T ss_pred hCCceEEEcCCCCcHHHHHHHHHhhcCCcEEEEcCcccCCCCCCH-HHHH----HhC------CCCCEEEEECchhHHHH
Confidence 456999999999999999999999999999999999998775432 1111 111 23359999999999999
Q ss_pred HHHHHhcCCCceeEEEEEEeCCceEEEEc-CCeEEEeCCC
Q psy4307 367 CKDIEKQEGYQAWIIGIVEKGNRTARIID-KPRVIEVPAK 405 (412)
Q Consensus 367 ~~~l~~~~g~~a~vIG~V~~~~~~v~i~~-~g~~~~~~~~ 405 (412)
++.++++ ++++++||+|++++. +++.. +++.+.++-+
T Consensus 279 ~~~~~~~-g~~~~~IG~v~~~~~-~~l~~~~~~~~~~~~~ 316 (323)
T TIGR03267 279 VRVLEDA-GLTASVIGEVIEDGK-LYVSDGDESAVVFDFR 316 (323)
T ss_pred HHHHHHc-CCcEEEEEEEecCce-EEEEECCcceEEEecC
Confidence 9999987 899999999998643 55554 5555555443
No 14
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=3.4e-45 Score=364.09 Aligned_cols=300 Identities=19% Similarity=0.180 Sum_probs=225.4
Q ss_pred ccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC-CCCCCChhHHHHHHH
Q psy4307 56 RGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF-YPLVDDPYMMGKIAC 134 (412)
Q Consensus 56 cggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~-~p~~~dp~~~G~~av 134 (412)
-|--+.++.|++++-.-.. + +.+..+|||++++.+ +..+|+|||.+ ++...+|+.+||+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~------~----------~~~~~dDdaa~~~~~--~~~lv~ttDgvh~~~~~~p~~~G~~av 72 (346)
T cd02691 11 EGDFYVHEKLAELIGKTGE------V----------SIVAQDDDAGVDAAD--VEYIVVAIDGIHSRLSDFPFLAGFHAT 72 (346)
T ss_pred cchHHHHHHHHHHHHHhcC------C----------ccccccCceEEEccC--CCeEEEEeCCCCCCcccChHHHHHHHH
Confidence 3445667777776654322 2 226778999998876 46899999975 455568999999999
Q ss_pred HHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEccccccc-------CceeEeEEEE
Q psy4307 135 SNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVN-------PWCTIGGVAT 207 (412)
Q Consensus 135 ~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~-------~~~~i~~t~i 207 (412)
++|+|||+||||+|+ +++.++++|++++. ++++++++||.++|+++|++|+||||..+ +.+++++|++
T Consensus 73 ~~nvSDIaAmGa~P~-~~l~sl~lp~~~~~----~~l~~i~~Gi~~a~~~~gv~lvGGdT~~~~~~~~~~~~l~~svT~i 147 (346)
T cd02691 73 RAALRDVMVMGARPV-ALLSDIHLADDGDV----GKLFDFTAGVTAVSEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAV 147 (346)
T ss_pred HHHHHHHHHcCCchH-HhheeeecCCCCCH----HHHHHHHHHHHHHHHHcCCeEEeeeeEEecCCcccCCceEEEEEEE
Confidence 999999999999999 57778999988776 68999999999999999999999999864 3356789999
Q ss_pred EEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy4307 208 TVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHK 287 (412)
Q Consensus 208 G~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~ 287 (412)
|.+++ ..+.+++|||||.|++||++|.+.+. ++.++.... +.+...+.+.. + .+..++..
T Consensus 148 G~~~~-~~~~r~gA~pGD~I~vtg~~Gg~~~~-~l~ll~~~~--~~~~~~~~~~~--------------~--~~~~~l~~ 207 (346)
T cd02691 148 GRSKS-DPSRRKNAEPGDLILMTEGAGGGTIT-TTAIYHGMP--DVVEETLNVDF--------------I--KACEALRD 207 (346)
T ss_pred EEecc-ccccccCCCCCCEEEEECCccHHHHH-HHHHHccch--hHHHhhccHHH--------------H--HHHHHHHH
Confidence 99865 45667999999999999999865432 222222100 00000111110 1 11112211
Q ss_pred ----cCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCC--ChHHHHHHHHHcCChhhhccCCcccccceEEEEEccc
Q psy4307 288 ----YNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLP--VIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPRE 361 (412)
Q Consensus 288 ----~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iP--v~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e 361 (412)
..+|||||+|+|||+++|+|||++|++|++|+.++|| ++++++++|+.++.+. +.. +.++||+++|++
T Consensus 208 ~~~~~~v~am~DiSdGGL~~~L~ela~aSgvg~~Id~~~IP~pl~~~v~~~~~~~~~~p-----~~~-~~~~LL~tv~~~ 281 (346)
T cd02691 208 SGLVSKVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLINPKVLKMLEELGIDP-----LGV-SLDSLMIIAPEE 281 (346)
T ss_pred hCCCCCeEEEEcCCCchHHHHHHHHHHHcCCEEEEEhhhCccccCHHHHHHHHHcCCCh-----hHc-ccCcEEEEEChH
Confidence 2489999999999999999999999999999999997 9999999999887542 111 245799999999
Q ss_pred cHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEEEeCCCC
Q psy4307 362 QAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVIEVPAKE 406 (412)
Q Consensus 362 ~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~~~~~~~ 406 (412)
+++++++.++++ ++++++||+|+++++ ++++.+++..++.++.
T Consensus 282 ~~~~v~~~l~~~-g~~~~vIG~V~~~~~-~~l~~~~~~~~l~~~~ 324 (346)
T cd02691 282 DAVDIIRTLREA-GVRADEVGRVEEGRG-VPLVVTGEGRELKPAF 324 (346)
T ss_pred HHHHHHHHHHhc-CCCeEEEEEEEeCCc-eEEEeCCCccccchhh
Confidence 999999999987 899999999998754 5565555554555543
No 15
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=100.00 E-value=3.2e-45 Score=361.79 Aligned_cols=279 Identities=27% Similarity=0.351 Sum_probs=219.5
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCC-----CCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHh
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFF-----YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERD 168 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~-----~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~ 168 (412)
.++|||||++++++ +..+++|+|++ ++...+||++||++|++|+|||+||||+|+ +++.++++|++++.
T Consensus 21 ~g~gdDaavi~~~~-~~~lvis~D~~~~~~~~~~~~~p~~~G~~av~~~~sDiaa~Ga~P~-~~~~~~~~P~~~~~---- 94 (317)
T TIGR01379 21 LGIGDDAALVSAPE-GRDLVLTTDTLVEGVHFPPDTTPEDLGWKAVAVNLSDLAAMGATPK-WFLLSLGLPSDLDE---- 94 (317)
T ss_pred cCCCCcEEEEecCC-CCeEEEEeccccCCcCCCCCCCHHHHHHHHHHHHHHHHHHcCCccc-EEEEEEEcCCCCCH----
Confidence 67899999999975 56799999963 344459999999999999999999999999 67788999987766
Q ss_pred hHHHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCc
Q psy4307 169 VVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQP 248 (412)
Q Consensus 169 ~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~ 248 (412)
.+++++++||.++|+++|++++||||..++++++++|++|.+++.+++.+.++++||.|++||++|.+.++... +..
T Consensus 95 ~~l~~i~~Gi~~a~~~~g~~ivGG~t~~~~~~~i~vt~iG~~~~~~~~~~~~a~~Gd~I~ltg~~G~~~~~~~~--~~~- 171 (317)
T TIGR01379 95 AWLEAFYDGLFECAKQYGVPLVGGDTVSSPELVVTVTAIGEAPKGRALLRSGAKPGDLVFVTGTLGDSAAGLAL--LLK- 171 (317)
T ss_pred HHHHHHHHHHHHHHHHcCCeEECccCCCCCCcEEEEEEEEEeCCCCceecCCCCCCCEEEEcCchhHHHHHHHH--Hhc-
Confidence 57999999999999999999999999999999999999999988888999999999999999999998764222 221
Q ss_pred hhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHH
Q psy4307 249 ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAK 328 (412)
Q Consensus 249 ~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~ 328 (412)
+. .....+ ...+..+....++.++. . ...+.+ .+++|||+|+ ||+++|+|||++|++|++|++++||+.++
T Consensus 172 ~~----~~~~~~-~~~~~~~~~~~p~~~~~-~-~~~l~~-~v~a~~DvS~-GL~~~l~ema~~sg~g~~i~~~~ipv~~~ 242 (317)
T TIGR01379 172 GK----KEPDEE-DDEELLQRHLRPEPRVE-E-GLALAG-YANAAIDVSD-GLASDLGHIAEASGVGIVIDLDRLPLSSE 242 (317)
T ss_pred CC----ccCcch-hHHHHHHHhcCCCChHH-H-HHHHhh-hcceeEEchH-hHHHHHHHHHHHcCCcEEEehhcCCCCHH
Confidence 11 011122 22222233344444442 2 233334 5999999999 79999999999999999999999999999
Q ss_pred HHHHHHHcCCh-h--hhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEEE
Q psy4307 329 MAAVAKACGNM-F--QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVIE 401 (412)
Q Consensus 329 ~~~~~~~~~~~-~--~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~~ 401 (412)
+.++|+ +.+ + .+..+++++ ||+++++++++++++.+++ ++++||+|+++++.+ +..+++.+.
T Consensus 243 ~~~~~~--~~~~~~~~~~~ge~~~----ll~~v~~~~~~~~~~~~~~----~~~~IG~v~~~~~~~-~~~~~~~~~ 307 (317)
T TIGR01379 243 LAAWAE--GKDPLEWALSGGEDYE----LVFTVPPERREALLDAAKG----PLTRIGRVTEGEGVV-LLADGKTVE 307 (317)
T ss_pred HHHHhc--CCCHHHHHhcCCccee----EEEEeCHHHHHHHHhhccC----CceEEEEEEcCCceE-EEeCCcEee
Confidence 999998 333 2 222333333 9999999999988887753 789999999876533 446777664
No 16
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=100.00 E-value=7.3e-45 Score=355.09 Aligned_cols=263 Identities=27% Similarity=0.326 Sum_probs=209.3
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCC-----CCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHh
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFF-----YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERD 168 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~-----~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~ 168 (412)
+++|||||+++.. +..+++|||++ +|...+||++||+++++|+|||+||||+|+ ++++++++|+.+++
T Consensus 21 ~~~gdDaavi~~~--~~~lv~t~D~~~~~~~f~~~~~p~~~G~~av~~~~sDi~a~Ga~P~-~~~~~l~~p~~~~~---- 93 (291)
T cd02194 21 LGIGDDAAVLKPP--GGRLVVTTDTLVEGVHFPPDTTPEDIGWKALAVNLSDLAAMGARPL-GFLLSLGLPPDTDE---- 93 (291)
T ss_pred CCCCCCEEEecCC--CCeEEEEecccccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCccc-eeEEEEECCCCCCH----
Confidence 6889999999843 56899999984 333459999999999999999999999999 58889999987766
Q ss_pred hHHHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCc
Q psy4307 169 VVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQP 248 (412)
Q Consensus 169 ~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~ 248 (412)
++++++++||.++|+++|++++||||+.++++++++|++|.+++.+++.++++++||.|++||++|.+..+..+ +...
T Consensus 94 ~~l~~i~~Gi~~a~~~~g~~liGGdt~~~~~~~i~vt~iG~~~~~~~~~~~~a~~GD~I~ltg~~G~~~~g~~~--~~~~ 171 (291)
T cd02194 94 EWLEEFYRGLAEAADRYGVPLVGGDTTSGSELVISVTALGEVEKGKPLRRSGAKPGDLLYVTGTLGDAAAGLAL--LLGG 171 (291)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcccCCCCCCeEEEEEEEEecCCCCceecCCCCCCCEEEEeCCccHHHHHHHH--HhCC
Confidence 68999999999999999999999999999999999999999987789999999999999999999998775333 2221
Q ss_pred hhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHH
Q psy4307 249 ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAK 328 (412)
Q Consensus 249 ~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~ 328 (412)
. ..+.+..++..+....+..++. ....+.+..+|+|||+|+ ||+++|+|||++|++|++|+.++||++++
T Consensus 172 ~-------~~~~~~~~~~~~~~~~p~~~~~--~~~~l~~~~v~a~~DiSd-GL~~~l~ela~~s~~g~~i~~~~ipi~~~ 241 (291)
T cd02194 172 L-------KLPEELYEELIERHLRPEPRLE--LGRALAEGLATAMIDISD-GLLADLGHIAEASGVGAVIDLDKLPLSPA 241 (291)
T ss_pred C-------CCChhhHHHHHHHhcCCCCcHH--HHHHHHhCCCeEEEEchH-hHHHHHHHHHHHcCCeEEEecccCCCCHH
Confidence 1 0122222333333333433332 233333356999999999 79999999999999999999999999999
Q ss_pred HHHHHHHcCCh-hh--hccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEE
Q psy4307 329 MAAVAKACGNM-FQ--LLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 385 (412)
Q Consensus 329 ~~~~~~~~~~~-~~--l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~ 385 (412)
+.+ +.++.+ +. +.+++|++ ||++++++++ .+.+++. ++++++||+|+
T Consensus 242 ~~~--~~~~~~p~~~~~~gGedy~----ll~~v~~~~~---~~~~~~~-~~~~~~IG~v~ 291 (291)
T cd02194 242 LRA--AELGEDALELALSGGEDYE----LLFTVPPENA---EAAAAKL-GVPVTVIGRVT 291 (291)
T ss_pred HHh--hhcCCCHHHHHhcCCcceE----EEEEechhHh---HHHHhhc-CCCceEEEEEC
Confidence 987 555554 33 34445554 9999999876 5566665 89999999984
No 17
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=100.00 E-value=4.1e-44 Score=355.65 Aligned_cols=280 Identities=20% Similarity=0.239 Sum_probs=210.1
Q ss_pred CCCCCCeeEEecCCCC--ceeEEEecCC-----CCCCCCh-hHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChh
Q psy4307 94 IGIGMDSAVIPLRHGG--LSLVQTTDFF-----YPLVDDP-YMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEK 165 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~--~~lv~ttD~~-----~p~~~dp-~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~ 165 (412)
+++||||||+++++.. ..+++|||+. ++...+| +.+||+|++.|+|||+||||+|+ +++++|+++ +.++
T Consensus 34 ~g~GdDaav~~~~~~~~~~~l~~t~D~~g~~~~~~~~~~~~~~~G~~av~~n~sDiaa~Ga~P~-~~~~~l~~~-~~~~- 110 (332)
T TIGR00878 34 GGLGGFAGLFDLGDKYKEPVLVSGTDGVGTKLLVAEAMNKHDTIGIDLVAMNVNDLLVQGAEPL-FFLDYLAVG-KLDP- 110 (332)
T ss_pred cCCCCCeEEEEcccccCCceEEEeccccccchHHHHHcCchHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHhcC-CCCH-
Confidence 6899999999987411 5699999983 1212345 45999999999999999999999 578888874 4454
Q ss_pred hHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHH
Q psy4307 166 ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAV 239 (412)
Q Consensus 166 e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~ 239 (412)
++++++++||.++|+++|++|+||||+.+++ ..+++|++|.++++++++++++++||.|++||++|.+..+
T Consensus 111 ---~~~~~i~~Gi~~a~~~~g~~ivGG~t~~~~~~~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~i~ltg~~G~~~~g 187 (332)
T TIGR00878 111 ---EVASQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEKVKPGDVLIGLGSSGIHSNG 187 (332)
T ss_pred ---HHHHHHHHHHHHHHHHcCCEEEceeeeECCCcccCCceEEEEEEEEEEcCccccCccCCCCCCEEEEECCchHHHHH
Confidence 6899999999999999999999999998775 5778999999998889999999999999999999988764
Q ss_pred HHHHhhcC--chhhhh-hcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeE
Q psy4307 240 NAHQWLDQ--PERWNR-IKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEV 316 (412)
Q Consensus 240 ~a~~~l~~--~~~~~~-l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~ 316 (412)
..+ ++. ...... +. ....+..+...+..+++..++.+....+++...+|+|||||+|||+++|+||+ .+++|+
T Consensus 188 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~p~~~~~~~~~~l~~~~~i~a~~DiS~gGL~~~L~e~~-~sg~g~ 263 (332)
T TIGR00878 188 LSL--VRKVLEDIAGLDYE-DTPEDFGKTLGEELLEPTRIYVKPILELIKEVEVHGLAHITGGGLLENIPRRL-PDGLKA 263 (332)
T ss_pred HHH--HHHHhhhccccccc-cccccccchHHHHHhhHhHHHHHHHHHHHhcCCceEEEeCCCccHhhhHHHhc-cCCceE
Confidence 322 221 000000 00 00000001112222223222222334455555699999999999999999998 579999
Q ss_pred EEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEe
Q psy4307 317 SFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEK 386 (412)
Q Consensus 317 ~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~ 386 (412)
+|+.+++|+++.++.+++.++.+ +.++..+ ++++|||+++++++++++++.++++ |+++++||+|++
T Consensus 264 ~I~~~~ipi~~~~~~~~e~~~~~~~e~~~~~--~~g~glli~v~~e~~~~~~~~l~~~-gi~a~vIG~V~~ 331 (332)
T TIGR00878 264 VIDMSSWPQPPIFKWIQEAGNVEEEEMYRTF--NMGVGFVVIVPEEEVDKALALLNAR-GEKAWVIGEVKK 331 (332)
T ss_pred EEecCCCCCCHHHHHHHHCCCCChHHHHHHH--hccCCEEEEECHHHHHHHHHHHHhc-CCCcEEEEEEeC
Confidence 99999999999999999976553 1222212 2466799999999999999999997 999999999975
No 18
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=100.00 E-value=1.9e-43 Score=350.47 Aligned_cols=276 Identities=20% Similarity=0.231 Sum_probs=208.8
Q ss_pred CCCCCCeeEEecCCC--CceeEEEecCC-----C-CCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChh
Q psy4307 94 IGIGMDSAVIPLRHG--GLSLVQTTDFF-----Y-PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEK 165 (412)
Q Consensus 94 ~~~GdDaavi~~~~~--~~~lv~ttD~~-----~-p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~ 165 (412)
+|+||||||+++..+ +..+++|||.+ . +....|+++||+|+++|+|||+||||+|+ ++++++++| +.++
T Consensus 34 ~giGdDaav~~~~~~~~~~~lv~t~D~~~~~~~~~~~~~~~~~iG~~av~~n~sDIaamGa~P~-~~~~~l~~~-~~~~- 110 (327)
T PRK05385 34 GGLGGFGGLFDLPKGYKEPVLVSGTDGVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGAEPL-FFLDYIATG-KLDP- 110 (327)
T ss_pred cCCcCccEEEecccccCCcceeeccccccchhHHHHHhCCHhhHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcC-CCCH-
Confidence 689999999997521 35699999974 1 12456889999999999999999999999 577888885 4554
Q ss_pred hHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHH
Q psy4307 166 ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAV 239 (412)
Q Consensus 166 e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~ 239 (412)
++++++++|+.++|+++|++|+||||..++. +.+++|++|.+++++++++++++|||.|++||.+|.++.+
T Consensus 111 ---~~~~~~~~Gi~~~~~~~g~~ivGGdt~~~~~~~~~~~~~i~~t~~G~~~~~~~~~r~~a~~GD~I~~tg~~G~~g~g 187 (327)
T PRK05385 111 ---EVAAQVVKGIAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDGSKVKEGDVLIGLASSGLHSNG 187 (327)
T ss_pred ---HHHHHHHHHHHHHHHHcCCeEeCccceECCCcccCCCeeEEEEEEEEEecccccCcCCCCCCCEEEEeCCcchhhhH
Confidence 6899999999999999999999999987764 6789999999988889999999999999999999987653
Q ss_pred HHH--HhhcC-chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeE
Q psy4307 240 NAH--QWLDQ-PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEV 316 (412)
Q Consensus 240 ~a~--~~l~~-~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~ 316 (412)
..+ +.+.. +..++.. ......+ .+..+++..++.+....++++..+++|||||+|||+++|+||+ +|++|+
T Consensus 188 ~~~l~~~~~~~~~~~~~~--~~~~~~~---~~~~l~p~~~~~~~~~~l~~~~~v~a~~DiSdgGL~~~L~eia-~sgvg~ 261 (327)
T PRK05385 188 YSLVRKILEVLDLDDTLP--ELDGKTL---GEELLEPTRIYVKPVLALLKEVDVKGMAHITGGGFIENLPRVL-PEGLGA 261 (327)
T ss_pred HHHHHHHHHhcccccccc--ccccchH---HHHHhhhhHHHHHHHHHHHhcCCceEEEeCCCchHhhhhHHhc-CCCceE
Confidence 222 11110 0001000 0000011 1122223222212333455556799999999999999999999 999999
Q ss_pred EEEccCCCChHHHHHHHHHcCChh-hhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEE
Q psy4307 317 SFVIHNLPVIAKMAAVAKACGNMF-QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIV 384 (412)
Q Consensus 317 ~I~~~~iPv~~~~~~~~~~~~~~~-~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V 384 (412)
+|++++||+++.++.+|+.++.++ .++.-+. .+++||+++|+++++++++.+++. |+++++||+|
T Consensus 262 ~Id~~~iP~~~~~~~~~~~~~~~~~~~~~~~~--~G~~Ll~tv~~~~~~~l~~~l~~~-g~~~~~IG~v 327 (327)
T PRK05385 262 EIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFN--MGIGMVLIVPPEDADAALALLEAA-GEDAWVIGRV 327 (327)
T ss_pred EEecCCCCCCHHHHHHHHcCCCCHHHHHHHHh--cCCcEEEEECHHHHHHHHHHHHhc-CCCceEEEEC
Confidence 999999999999999999887653 2211110 123699999999999999999997 9999999986
No 19
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=7.9e-43 Score=341.70 Aligned_cols=275 Identities=19% Similarity=0.209 Sum_probs=210.4
Q ss_pred CCCCCeeEEecCCC---CceeEEEecCC------CCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChh
Q psy4307 95 GIGMDSAVIPLRHG---GLSLVQTTDFF------YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEK 165 (412)
Q Consensus 95 ~~GdDaavi~~~~~---~~~lv~ttD~~------~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~ 165 (412)
.+|.||++|++.++ +..++++||.+ .|.+..++++||+||++|+|||+||||+|. +++++|++|+ .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~D~~~~~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~-~~~~~l~~~~-~~~- 78 (297)
T cd02196 2 GIGGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPL-FFLDYIATGK-LDP- 78 (297)
T ss_pred CCCceeEEEeccccCCCCcEEEEecCCcchHHHHHHHcCCHhHHHHHHHHHhHHHHHHcCCEeH-HHHhhhhcCC-CCH-
Confidence 45789999999752 46789999986 233456789999999999999999999999 5788999975 455
Q ss_pred hHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHH
Q psy4307 166 ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAV 239 (412)
Q Consensus 166 e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~ 239 (412)
++++++++|+.++|+++|++|+||||..+++ +.+++|++|.+++++++++++++|||.|++||++|.++.+
T Consensus 79 ---~~l~~~~~Gi~~~~~~~gi~ivGGdt~~~~~~~~~~~~~isvt~iG~~~~~~~~~~~~a~~Gd~I~~tg~~G~~~~g 155 (297)
T cd02196 79 ---EVAAEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDGSKIKPGDVLIGLPSSGLHSNG 155 (297)
T ss_pred ---HHHHHHHHHHHHHHHHcCCeEeeecceEccCcccCCceeEEEEEEEEEeccccccccCCCCCCEEEEccCcchhhhH
Confidence 6889999999999999999999999997665 5588999999988889999999999999999999998664
Q ss_pred HHHHhhcC--c---hhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCC
Q psy4307 240 NAHQWLDQ--P---ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKN 314 (412)
Q Consensus 240 ~a~~~l~~--~---~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~ 314 (412)
..+ ++. . ..+......+.+. + .+..+++..++......+++...+++|||+|+|||+++|+||+++ ++
T Consensus 156 ~~~--~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~e~a~~-~~ 228 (297)
T cd02196 156 YSL--VRKILFEEGLDYDDPEPGLGKT-L---GEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRVLPE-GL 228 (297)
T ss_pred HHH--HHHHHhhcccccccccccccch-H---HHHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCchhhccHhhccC-Cc
Confidence 322 211 0 0111000001111 1 111223322222222334555679999999999999999999975 99
Q ss_pred eEEEEccCCCChHHHHHHHHHcCChh-hhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEE
Q psy4307 315 EVSFVIHNLPVIAKMAAVAKACGNMF-QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 385 (412)
Q Consensus 315 g~~I~~~~iPv~~~~~~~~~~~~~~~-~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~ 385 (412)
|++|+.++||+++.++++++.++.+. .++.-+ .++++||+++++++++++++.++++ |+++++||+|+
T Consensus 229 g~~Id~~~iPv~~~~~~~~e~~~~~p~~~~~~~--~~g~gll~~v~~~~~~~~~~~l~~~-gi~a~~IG~v~ 297 (297)
T cd02196 229 GAVIDLGSWEIPPIFKWIQKAGNVSEEEMYRTF--NMGIGMVLIVSEEDADEVLEILEKL-GEKAYVIGEVV 297 (297)
T ss_pred eEEEecCCCCCCHHHHHHHHhCCCCHHHHHHHH--hCCCCEEEEECHHHHHHHHHHHHhc-CCCeEEEEEEC
Confidence 99999999999999999999876542 222111 1345799999999999999999997 99999999984
No 20
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=100.00 E-value=4.1e-41 Score=335.35 Aligned_cols=277 Identities=18% Similarity=0.207 Sum_probs=211.6
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCC---CCC-C-CChhH-HHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFF---YPL-V-DDPYM-MGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKER 167 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~---~p~-~-~dp~~-~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~ 167 (412)
+++|||||++++++ ..||+|||++ +++ + .++|+ +||++|++|+|||+||||+|+ ++++++ +|++++.
T Consensus 83 ~giGdDaavi~~~~--~~LV~ttD~vgtk~~~a~~~~~~~~iG~~aVa~nvnDIaamGA~P~-~~l~~l-~~~~l~~--- 155 (379)
T PLN02557 83 PGIGGFGGLFPFGD--SYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPL-FFLDYF-ATSHLDV--- 155 (379)
T ss_pred CCCCCCeEEEecCC--CEEEEEeCCCCCCchhhhhcCcHhhHHHHHHHhHHHHHHHcCCChH-Hhheec-ccCCCCH---
Confidence 58999999999873 5799999985 111 2 56774 999999999999999999999 577766 4777776
Q ss_pred hhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHH--
Q psy4307 168 DVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAV-- 239 (412)
Q Consensus 168 ~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~-- 239 (412)
++++++++|+.++|+++|++++||||.++|. +.+++|++|.++++++++++++||||.|+.+++.|.|..+
T Consensus 156 -~~l~~i~~Gi~~a~~~~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~~~~i~~~~akpGD~Iigl~ssGiHsng~s 234 (379)
T PLN02557 156 -DLAEKVIKGIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNIVAGDVLIGLPSSGVHSNGFS 234 (379)
T ss_pred -HHHHHHHHHHHHHHHHhCCEEEeecceEccCcccCCceeEEEEEEEEEecccccccccCCCCCEEEEecccccccchhh
Confidence 6899999999999999999999999998763 5699999999999999999999999999999988887552
Q ss_pred HHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEE
Q psy4307 240 NAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFV 319 (412)
Q Consensus 240 ~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~ 319 (412)
.+.+.+.. .... +...++... ....+..+.+...+.+....++++..+|+|+|+|+|||+++|+||+. +++|++|+
T Consensus 235 l~r~~l~~-~~~~-~~~~~~~~~-~~l~e~ll~pt~iyv~~vl~l~~~~~V~am~diTgGGl~~~L~e~~~-~g~g~~Id 310 (379)
T PLN02557 235 LVRRVLAK-SGLS-LKDQLPGAS-VTIGEALMAPTVIYVKQVLDIISKGGVKGIAHITGGGFTDNIPRVFP-KGLGAKIR 310 (379)
T ss_pred hhHHHHHh-cccc-ccccccccC-ccHHHHhhcchHHHHHHHHHHhhcCCeEEEEcCCcchHhhhhHHHhc-CCeeEEEe
Confidence 22222211 0000 000111000 00011123332223333344455567999999999999999999996 79999999
Q ss_pred ccCCCChHHHHHHHHHcCCh-hhhccCCcccccc-eEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCc
Q psy4307 320 IHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSG-GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNR 389 (412)
Q Consensus 320 ~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsG-glLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~ 389 (412)
.+++|+.+.++.+|+.++++ ..++..| ++| ||+++|++++++++++. . +.++++||+|+++++
T Consensus 311 ~~~~pv~~~f~~i~~~g~i~~~em~~tf---N~GiGmv~~V~~~~a~~~l~~---~-~~~a~~IG~V~~~~~ 375 (379)
T PLN02557 311 TGSWEVPPLFKWLQEAGNIEDAEMRRTF---NMGIGMVLVVSPEAADRILEE---G-AYPAYRIGEVINGEG 375 (379)
T ss_pred CCCCCCCHHHHHHHHhCCCCHHHHHHhc---CCcccEEEEECHHHHHHHHHh---c-CCCeEEEEEEEcCCc
Confidence 99999999999999999876 3444334 699 99999999999988776 2 588999999998654
No 21
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=1.9e-41 Score=329.35 Aligned_cols=250 Identities=20% Similarity=0.257 Sum_probs=192.5
Q ss_pred CCCCCCCeeEEecCCCCceeEEEecCCCC--CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhH
Q psy4307 93 RIGIGMDSAVIPLRHGGLSLVQTTDFFYP--LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVV 170 (412)
Q Consensus 93 ~~~~GdDaavi~~~~~~~~lv~ttD~~~p--~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~ 170 (412)
.+++|||||+++++ +..+++|+|++.+ ...+||++||+|+++|+|||+||||+|+ +++++|++|+ + ++
T Consensus 31 ~~g~GdDaavi~~~--~~~lvit~D~~~~~~~~~~p~~~G~~av~~~vsDiaa~Ga~P~-~~~~~l~~p~---~----e~ 100 (283)
T cd02192 31 AADLGDDAAAIPDG--DGYLLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAMGGRPL-AMVDALWSPS---A----EA 100 (283)
T ss_pred cCCCCCCEEEEecC--CcEEEEEecccccccccCCHHHHHHHHHHHHHHHHHhcCCEee-eeeeeecCCC---H----HH
Confidence 37899999999875 4689999999654 3468999999999999999999999999 6888999983 2 57
Q ss_pred HHHHHHHHHHHHHHcCCeEEcccccccC-ceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCch
Q psy4307 171 IPLMLRGFKDSALEAGTAVTGGQTVVNP-WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPE 249 (412)
Q Consensus 171 l~~i~~Gi~~a~~~~gv~ivGG~T~~~~-~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~ 249 (412)
++++++|+.++|+++|++|+||||..++ .+++++|++|.+++.+++ ++++++||.|++||+++........ +.
T Consensus 101 l~~i~~Gi~~a~~~~gi~ivGGdt~~~~~~~~i~vt~iG~~~~~~~~-r~~a~~GD~I~vtg~l~g~~~g~~~--~~--- 174 (283)
T cd02192 101 AAQVLEGMRDAAEKFGVPIVGGHTHPDSPYNALSVAILGRARKDLLI-SFGAKPGDRLILAIDLDGRVHPSPP--PN--- 174 (283)
T ss_pred HHHHHHHHHHHHHHcCCcEecccCCCCCCCCeEEEEEEEEEcCCccc-cCCCCCCCEEEEEeCCCCccccccc--cC---
Confidence 9999999999999999999999999764 689999999999887777 9999999999999887553311011 00
Q ss_pred hhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHH
Q psy4307 250 RWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKM 329 (412)
Q Consensus 250 ~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~ 329 (412)
+.. ......+. +++... ....++....+++|||+|+|||+++|+|||++|++|++|++++||+.+.+
T Consensus 175 -~~~-~~~~~~~~--------~~~~~~---~~~~l~~~~~v~a~~DiSdGGL~~~L~ela~~sg~G~~Id~~~ip~~~~~ 241 (283)
T cd02192 175 -WDA-TTMKSPAL--------LRRQIA---LLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIPRPEGV 241 (283)
T ss_pred -ccc-cccCCHHH--------HHHHHH---HHHHHHHcCCCceeecCCCCcHHHHHHHHHHhcCCcEEEecccCCCCCCC
Confidence 100 00011111 111111 11223333458999999999999999999999999999999999997653
Q ss_pred HHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEE
Q psy4307 330 AAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGI 383 (412)
Q Consensus 330 ~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~ 383 (412)
. .++.+ .. +.+++||+++++++++++++.++++ |+++++||+
T Consensus 242 ~-~~~~l-----~~-----~~~~~ll~~v~~~~~~~v~~~l~~~-gi~~~~IG~ 283 (283)
T cd02192 242 D-LERWL-----KC-----FPGFGFLLTARPENADEVVAVFAAV-GITAAVIGE 283 (283)
T ss_pred C-hHHHH-----Hh-----CCCCceEEEECHHhHHHHHHHHHHc-CCcEEEeCC
Confidence 2 12211 11 1256799999999999999999997 999999995
No 22
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=6.1e-40 Score=356.26 Aligned_cols=304 Identities=16% Similarity=0.206 Sum_probs=225.5
Q ss_pred CCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC-CCCCCChhHHHH
Q psy4307 53 LKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF-YPLVDDPYMMGK 131 (412)
Q Consensus 53 ~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~-~p~~~dp~~~G~ 131 (412)
..||++|+++.+|+. +... .++ ++ .++||||||+++++ +..+++++|.| +|.+.+||.+||
T Consensus 30 sehc~~k~~~~~~~~----~~~~-----~~~-v~-------~g~gDDaavi~~~~-~~~lv~~~e~h~~p~~~~P~~~a~ 91 (715)
T TIGR01736 30 SEHCSYKSSKKLLKQ----FPTK-----GPN-VI-------QGPGEDAGVVDIGD-GYAVVFKMESHNHPSAIEPYNGAA 91 (715)
T ss_pred hhhcCCcCcHHHHhh----CCCC-----CCc-EE-------EeeCCceEEEEeCC-CeEEEEEeccCCCCCCcCCCCchh
Confidence 469999999876643 3221 121 33 46789999999986 66789999985 688899999999
Q ss_pred HHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC----ceeEeEEEE
Q psy4307 132 IACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP----WCTIGGVAT 207 (412)
Q Consensus 132 ~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~----~~~i~~t~i 207 (412)
+++..|+|||+||||+|+ +++++|++|+...+ ...++++++++|+.++|+++|++++||||.+++ +|++++|++
T Consensus 92 ~~v~~~vsDi~amGa~P~-~~~~~l~~~~~~~~-~~~~~l~~~~~Gi~~~~~~~Gv~ivGG~t~~~~~~~~~~~v~~t~i 169 (715)
T TIGR01736 92 TGVGGILRDILSMGARPI-ALLDSLRFGPLDDP-KNRYLFEGVVAGISDYGNRIGVPTVGGEVEFDESYNGNPLVNVMCV 169 (715)
T ss_pred hcccceecccccCCCeEe-eEEEEeccCCCCCc-chHHHHHHHHHHHHHhccccCCCccceEEEEecCcCCCCeEEEEEE
Confidence 999999999999999999 68889999853221 123679999999999999999999999998654 378999999
Q ss_pred EEecCCccccCCCCCCCCEEEEec-cc---ChHHHHHHHHhhcCchhhhhhccc--CCHHHHHHHHHHHHHhhhhhHHHH
Q psy4307 208 TVCQPNEYIVPDNAVVGDVLVLTK-PL---GTQVAVNAHQWLDQPERWNRIKLI--VSEDDVRKAYQRSMDSMARLNRIA 281 (412)
Q Consensus 208 G~~~~~~~~~~~~a~~GD~Iiltg-~l---G~~~~~~a~~~l~~~~~~~~l~~~--l~~~~l~~a~~~~~~~~~~l~~~~ 281 (412)
|.+++++++++++++|||.|++|| ++ |.+++..+...+... ..+..... .+....+ ..+.+..
T Consensus 170 G~~~~~~~~~~~~a~~GD~Iv~~G~~~G~~g~gg~~~~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~~~~~ 238 (715)
T TIGR01736 170 GLVRKDDIVTGKAKGPGNKLVLVGGKTGRDGIGGATFASEELSEE-AEEEDRPAVQVGDPFTE----------KLLIEAT 238 (715)
T ss_pred EEEchHHcccCCCCCCCCEEEEeCCCCCcCCccHHHHHHHHhccc-cccccCcccccCCcHHH----------HHHHHHH
Confidence 999988899999999999999998 55 444433232212110 00000000 0110000 0122333
Q ss_pred HHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccc
Q psy4307 282 ARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPRE 361 (412)
Q Consensus 282 ~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e 361 (412)
..++++..+++|||+|+|||+++|+|||.+|++|++|++++||+.+.-. ..+.++- ++++++|||+|+++
T Consensus 239 ~~l~~~~~v~a~~Dis~gGL~~~l~ema~~s~~G~~I~l~~iP~~~~~~-------~~~e~~~---se~qe~ll~~v~~~ 308 (715)
T TIGR01736 239 LEAVDTGLVKGIKDLGAAGLTSASSEMAAKGGLGAEIYLDKVPLREPGM-------TPYEIML---SESQERMLLVVAPE 308 (715)
T ss_pred HHHhccCCEEEEEEcCCchHHHhHHHHhccCCcEEEEEcccCccCCCCC-------CHHHHHH---hcccceEEEEEChh
Confidence 4455555699999999999999999999999999999999999876311 0122211 34567899999999
Q ss_pred cHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE
Q psy4307 362 QAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 362 ~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~ 399 (412)
+++++++.++++ |+++++||+|+++ +.+++..+|++
T Consensus 309 ~~~~~~~~~~~~-g~~~~vIG~v~~~-~~~~v~~~g~~ 344 (715)
T TIGR01736 309 DVEEVLEIFEKY-ELPASVIGEVTDE-GRIRLYYKGEV 344 (715)
T ss_pred hHHHHHHHHHHc-CCCEEEEEEEecC-CeEEEEECCce
Confidence 999999999997 9999999999975 45777777754
No 23
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=7.2e-39 Score=335.01 Aligned_cols=291 Identities=16% Similarity=0.213 Sum_probs=220.3
Q ss_pred CCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC-CCCCCChhHHHH
Q psy4307 53 LKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF-YPLVDDPYMMGK 131 (412)
Q Consensus 53 ~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~-~p~~~dp~~~G~ 131 (412)
..+|+.|++...|++ +. ..++||||||+++++ +..+++++|+| +|...+||.+|+
T Consensus 28 sehc~y~~~k~~l~~----~~-------------------~~g~gdDAaVi~~~~-~~~l~~k~Eshn~ps~idPy~GAa 83 (601)
T PRK14090 28 SEHCGYSHTKKYIRR----LP-------------------KTGFEGNAGVVNLDD-YYSIAFKIESHNHPSAIEPYNGAA 83 (601)
T ss_pred hhhcCCHHHHHHHhh----CC-------------------CCCCCCCeEEEEeCC-CCEEEEEECccCCcccCCHHHHHH
Confidence 358998766665553 21 146689999999976 66799999996 677889999999
Q ss_pred HHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc----eeEeEEEE
Q psy4307 132 IACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW----CTIGGVAT 207 (412)
Q Consensus 132 ~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~----~~i~~t~i 207 (412)
.++..++|||+||||+|+ +++++|.++ ++++++++||.++|+++|++++||||.+++. |++.++++
T Consensus 84 t~Vgg~irDIaamGA~Pi-alld~L~~~---------~~l~~vv~GI~~~~n~~GVP~VGGdt~~~~~y~~~plv~vt~v 153 (601)
T PRK14090 84 TGVGGIIRDVLAMGARPT-AIFDSLHMS---------RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAA 153 (601)
T ss_pred HHHHHHHhhHhhcCCChh-eeEEcCChH---------HHHHHHHHHHHHHHHHhCCCEeeEEEEEeCCccCCCceEEEEE
Confidence 999999999999999999 677777665 4789999999999999999999999998763 78899999
Q ss_pred EEecCCccccCCCCCCCCEEEEecc----cChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHH
Q psy4307 208 TVCQPNEYIVPDNAVVGDVLVLTKP----LGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAAR 283 (412)
Q Consensus 208 G~~~~~~~~~~~~a~~GD~Iiltg~----lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~ 283 (412)
|.+++++++++.++++||.|+++|. .|.+++..+...+.. +......-+..+...++. +.+...+
T Consensus 154 G~v~~~~iv~~~~a~~GD~Ivl~G~~tGrdGi~Gas~as~~l~~-~~~~~~~vq~gd~~~ek~----------l~e~~l~ 222 (601)
T PRK14090 154 GVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASFASEDLTG-EKATKLSIQVGDPFAEKM----------LIEAFLE 222 (601)
T ss_pred EEEcCccccccCCCCCCCEEEEEcCCCCCCCcchHHHHHHHhcC-CcccccccccCCHHHHHH----------HHHHHHh
Confidence 9999888899999999999999985 245444323322211 110001001112111111 1111112
Q ss_pred HHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccH
Q psy4307 284 LMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQA 363 (412)
Q Consensus 284 l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a 363 (412)
......+++|||+|+|||+.+++|||.++++|++|+++++|+++.... +|.++ -+|++++||++|++++.
T Consensus 223 ~~~~glI~a~~DigaGGLa~AL~EmA~~sg~G~~IdLdkVPl~~~~m~-------p~eil---~SESqeRmlv~V~~e~~ 292 (601)
T PRK14090 223 MVEEGLVEGAQDLGAGGVLSATSELVAKGGLGAIVHLDRVPLREPDME-------PWEIL---ISESQERMAVVTSPEKA 292 (601)
T ss_pred HHhcCCeEEeeCCCCCcHHHHHHHHHHHhCCeEEEEecccccCcccCC-------HHHHH---hcCCCCeEEEEECHHHH
Confidence 233446999999999999999999999999999999999999764211 13332 15789999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEE
Q psy4307 364 AAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVI 400 (412)
Q Consensus 364 ~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~ 400 (412)
+++++.++++ ++++++||+|++.. ++++..+++.+
T Consensus 293 ~~~~~i~~~~-~l~a~vIG~Vt~~~-~l~~~~~g~~v 327 (601)
T PRK14090 293 SRILEIAKKH-LLFGDIVAEVIDDP-IYRVMYRDDLV 327 (601)
T ss_pred HHHHHHHHhC-CCCEEEEEEEeCCc-eEEEEECCeEE
Confidence 9999999997 89999999999754 57777766653
No 24
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00 E-value=7.1e-39 Score=300.89 Aligned_cols=215 Identities=26% Similarity=0.352 Sum_probs=185.8
Q ss_pred eEEEecCCCCC-CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEE
Q psy4307 112 LVQTTDFFYPL-VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVT 190 (412)
Q Consensus 112 lv~ttD~~~p~-~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~iv 190 (412)
+++|+|++.+. ..+||++||++++.|+|||+|||++|+ ++++++++|+..++ ++++++++|+.++|+++|++++
T Consensus 2 l~~~~D~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~-~~~~~l~~~~~~~~----~~~~~~~~Gi~~~~~~~gi~iv 76 (222)
T cd00396 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPI-ALLASLSLSNGLEV----DILEDVVDGVAEACNQLGVPIV 76 (222)
T ss_pred eEEEECCCCCCcCCCCccHHHHHHHHhHHHHHhcCCccH-HHhhheccCCCCCH----HHHHHHHHHHHHHHHHcCCeEe
Confidence 78999998764 459999999999999999999999999 68889999987766 6899999999999999999999
Q ss_pred cccccccC-----ceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHH
Q psy4307 191 GGQTVVNP-----WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRK 265 (412)
Q Consensus 191 GG~T~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~ 265 (412)
||||+.++ .+.+++|++|.+++.+.+.++++++||.|+++| ++.
T Consensus 77 gG~t~~~~~~~~~~~~i~~t~~G~~~~~~~~~~~~~~~Gd~lv~~g----------~~~--------------------- 125 (222)
T cd00396 77 GGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG----------VDA--------------------- 125 (222)
T ss_pred ceeeEEccCCcCCCceEEEEEEEEecCCccccccCCCCCCEEEEeC----------hHH---------------------
Confidence 99999987 689999999999877777789999999999998 100
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccC
Q psy4307 266 AYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQG 345 (412)
Q Consensus 266 a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~ 345 (412)
.+ .+++...+++|||+|+|||+++|+|||.++++|++|+++++|+.+.+.++|+....+ .
T Consensus 126 -~~--------------~l~~~~~v~a~~Dvs~GGl~~~l~ema~~s~~g~~i~~~~ip~~~~~~~~~~~~~~~-----~ 185 (222)
T cd00396 126 -VL--------------ELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEE-----A 185 (222)
T ss_pred -HH--------------HHHHhCCeeEEEeCCCCcHHHHHHHHHHhcCCEEEEecccCcCcHHHHHHHHhcCcc-----h
Confidence 00 111123589999999999999999999999999999999999999999998654432 2
Q ss_pred CcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEE
Q psy4307 346 HSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGI 383 (412)
Q Consensus 346 ~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~ 383 (412)
+..+++++||+++++++++++++.+++. |+++++||+
T Consensus 186 ~~~~~~~~ll~~v~~~~~~~~~~~~~~~-g~~~~~IG~ 222 (222)
T cd00396 186 LLFNSSGGLLIAVPAEEADAVLLLLNGN-GIDAAVIGR 222 (222)
T ss_pred hhhccCccEEEEECHHHHHHHHHHHHHc-CCCEEEeCC
Confidence 3346788999999999999999999987 999999995
No 25
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=1.7e-38 Score=344.72 Aligned_cols=306 Identities=16% Similarity=0.220 Sum_probs=224.2
Q ss_pred CCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC-CCCCCChhHHHH
Q psy4307 53 LKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF-YPLVDDPYMMGK 131 (412)
Q Consensus 53 ~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~-~p~~~dp~~~G~ 131 (412)
..||+.|.++.+|+++ ... .++ ++ .++||||||+++++ +..++++++.| +|...+||.+|+
T Consensus 42 sehc~~k~s~~~l~~~----~~~-----~~~-v~-------~g~gdDaavi~~~~-~~~lv~~~Esh~~p~~~~P~~ga~ 103 (724)
T PRK01213 42 SEHCSYKSSKPLLRKF----PTK-----GPR-VL-------QGPGENAGVVDIGD-GQAVVFKIESHNHPSAVEPYQGAA 103 (724)
T ss_pred hccccCCCCHHHHhcC----CCC-----CCc-EE-------EeeCCCceEEEcCC-CcEEEEEeccCCCCCccCCccchh
Confidence 4699999999887643 221 121 33 46789999999986 66789999885 588889999999
Q ss_pred HHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC----ceeEeEEEE
Q psy4307 132 IACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP----WCTIGGVAT 207 (412)
Q Consensus 132 ~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~----~~~i~~t~i 207 (412)
.++..++|||+||||+|+ ++++++++|+..+ ....++++++++|+.++|+++|++++||||.+++ .|+++++++
T Consensus 104 ~~v~~~i~Di~amGa~P~-a~~~~l~~~~~~~-~~~~~~l~~~~~Gi~~~~n~~Gvp~vgG~t~~~~~~~~~p~v~~~~i 181 (724)
T PRK01213 104 TGVGGILRDIFSMGARPI-ALLDSLRFGELDH-PKTRYLLEGVVAGIGGYGNCIGVPTVGGEVYFDESYNGNPLVNAMCV 181 (724)
T ss_pred hcccceeccccccCceee-eeeeEEEccCCCC-CcHHHHHHHHHHHHHHHHHhcCCCEeeEEEEEeCCcCCCceEEEEEE
Confidence 999999999999999999 6888999985311 1233789999999999999999999999998754 378999999
Q ss_pred EEecCCccccCCCCCCCCEEEEecc----cChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHH
Q psy4307 208 TVCQPNEYIVPDNAVVGDVLVLTKP----LGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAAR 283 (412)
Q Consensus 208 G~~~~~~~~~~~~a~~GD~Iiltg~----lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~ 283 (412)
|.++++++++...++|||.|+++|. .|.+++..+...+........-.-++.....++ .+.+...+
T Consensus 182 G~~~~~~~~r~~~~~~Gd~Ii~~G~~tg~~Gigg~~~~s~~~~~~~~~~~~~vq~g~~~~~~----------~l~~~~~~ 251 (724)
T PRK01213 182 GLVRHDDIVLAKASGVGNPVVYVGAKTGRDGIGGASFASAELSEESEEKRPAVQVGDPFMEK----------LLIEACLE 251 (724)
T ss_pred EEEcHHHcccCCCCCCCCEEEEeCCCcCcccCcHHHHHHhhhhccccccCcccccCCcHHHH----------HHHHHHHH
Confidence 9998877554444459999999765 455554333322211000000000011111110 11122234
Q ss_pred HHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccH
Q psy4307 284 LMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQA 363 (412)
Q Consensus 284 l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a 363 (412)
+++...+++|||+|+|||+++++|||.++++|++|++++||+.+... ..++++. .+++++||++++|+++
T Consensus 252 ~~~~~~v~a~~D~g~gGL~~al~Ema~~s~~G~~I~ld~iP~~~~~~-------~p~ei~~---sesqerml~~v~~~~~ 321 (724)
T PRK01213 252 LIKTGLVVGIQDMGAAGLTCSSSEMAAKGGLGIELDLDKVPLREEGM-------TPYEIML---SESQERMLLVVKPGKE 321 (724)
T ss_pred HhccCCEEEEEECCCCcHHHhHHHHhccCCcEEEEEcccccccCCCC-------CHHHHHh---ccccceEEEEECHHHH
Confidence 45556799999999999999999999999999999999999876311 1133321 3456689999999999
Q ss_pred HHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEE
Q psy4307 364 AAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVI 400 (412)
Q Consensus 364 ~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~ 400 (412)
+++++.++++ ++++++||+|+++ +++++.++|+++
T Consensus 322 ~~~~~~~~~~-~~~~~vIG~vt~~-~~~~~~~~g~~v 356 (724)
T PRK01213 322 EEVLAIFEKW-DLDAAVIGEVTDD-GRLRVYHHGEVV 356 (724)
T ss_pred HHHHHHHHHc-CCCEEEEEEEecC-CeEEEEECCeEE
Confidence 9999999997 9999999999986 457777777553
No 26
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=3.2e-38 Score=303.95 Aligned_cols=253 Identities=19% Similarity=0.138 Sum_probs=188.1
Q ss_pred CeeEEecCC-CCceeEEEecCCCCC-CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHH
Q psy4307 99 DSAVIPLRH-GGLSLVQTTDFFYPL-VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLR 176 (412)
Q Consensus 99 Daavi~~~~-~~~~lv~ttD~~~p~-~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~ 176 (412)
||||+++++ .+..+++|+|.+++. +.+||.+||+|+++|+|||++|||+|. +++.+++++...+.++..+.++++++
T Consensus 1 Daav~~~~~~~~~~~~~t~d~~~~~~~~~p~~~g~~av~~~~sDiaa~Ga~P~-~~~~~l~~~~~~~~~~~~~~l~~~~~ 79 (264)
T cd02204 1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPL-AITDCLNFGNPEKPEGEMGQLVEAVL 79 (264)
T ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeeCHHHHHHHHHHHHHHHHhhhCCchH-heeeceeccCCCCCcchHHHHHHHHH
Confidence 899999873 255789999987553 579999999999999999999999999 67777877532222113357999999
Q ss_pred HHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecCCccccC-CCCCCCCEEEEecccChHHHHHHHHh-hcC
Q psy4307 177 GFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQPNEYIVP-DNAVVGDVLVLTKPLGTQVAVNAHQW-LDQ 247 (412)
Q Consensus 177 Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~~~~~~~-~~a~~GD~Iiltg~lG~~~~~~a~~~-l~~ 247 (412)
|+.++|+++|++++||||+.+++ |++++|++|.+++.+.+.+ +++++||.|++||+.|.+..+..+.. +..
T Consensus 80 g~~~~~~~~gv~ivGG~t~~~~~~~~~~~~~~~~~t~~G~~~~~~~~~~~~~a~~Gd~i~~~g~~g~~~~~~~~~~~~~~ 159 (264)
T cd02204 80 GLGDACRALGTPVIGGKDSLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDELGGSEYALAYHG 159 (264)
T ss_pred HHHHHHHHhCCCcccceeCCccCCCCcccCCcCeEEEEEEccChhhccCcccCCCCCEEEEECCCCCCCCCcHHHHHhcC
Confidence 99999999999999999976543 6788999999987665555 89999999999999886532211111 111
Q ss_pred chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChH
Q psy4307 248 PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIA 327 (412)
Q Consensus 248 ~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~ 327 (412)
..+. ..+...++. ..++......+++...++||||+|+|||+++++|||.+|++|++|+++++|+.+
T Consensus 160 -~~~~----~~~~~~~~~--------~~~~~~~~~~l~~~~~i~a~~DiSdGGL~~~l~ema~~s~~G~~i~~~~i~~~~ 226 (264)
T cd02204 160 -LGGG----APPLVDLER--------EKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDAED 226 (264)
T ss_pred -CCCC----CCCCCCHHH--------HHHHHHHHHHHHhCCCEEEEeeccccHHHHHHHHHHhcCCceEEEEcCCCCccc
Confidence 0010 111111111 011112223344444599999999999999999999999999999999999875
Q ss_pred HHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEE
Q psy4307 328 KMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIV 384 (412)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V 384 (412)
+ . +..++.|.+|++++++.++++. +++. ++++.+||+|
T Consensus 227 ---~---------~----l~~e~~g~ll~~~~~~~~~~~~--~~~~-~i~~~~IG~v 264 (264)
T cd02204 227 ---E---------L----LFSESLGRVLVEVKPENEEVFE--AEEA-GVPATVIGTV 264 (264)
T ss_pred ---c---------e----eecCCCCeEEEEEChhHHHHHH--HHhC-CCCeEEeecC
Confidence 1 1 1245788899999999988877 7765 8999999985
No 27
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=5.3e-38 Score=309.75 Aligned_cols=265 Identities=16% Similarity=0.177 Sum_probs=196.6
Q ss_pred eeEEEecCC-CCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCC-h------hhHhhHHHHHHHHHHHHH
Q psy4307 111 SLVQTTDFF-YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMT-E------KERDVVIPLMLRGFKDSA 182 (412)
Q Consensus 111 ~lv~ttD~~-~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~-~------~e~~~~l~~i~~Gi~~a~ 182 (412)
.+++++|.+ +|...+||++||+++..|+|||+||||+|+ ++++++++|+... . .+..++++++++|+.++|
T Consensus 27 ~~~~~~e~~~~~~~~~p~~~g~~~v~~~vsDiaamGa~P~-~~~~~l~~p~~~~~~~~~~~~~~~~~~l~~~~~Gi~~~~ 105 (313)
T cd02203 27 AVVFKVETHNHPSAIEPFGGAATGVGGIIRDILSMGARPI-ALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYG 105 (313)
T ss_pred EEEEEeccCCCCCCcCCcccHhhhhhhhhhcccccCCEEE-EEeeEEeecCCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 488999995 577799999999999999999999999999 6888999985321 0 113478999999999999
Q ss_pred HHcCCeEEcccccccCc----eeEeEEEEEEecCCccccCCCCCCCCEEEEecc----cChHHHHHHHHhhcCchhhhhh
Q psy4307 183 LEAGTAVTGGQTVVNPW----CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKP----LGTQVAVNAHQWLDQPERWNRI 254 (412)
Q Consensus 183 ~~~gv~ivGG~T~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~----lG~~~~~~a~~~l~~~~~~~~l 254 (412)
+++|++++||||..+++ |+++++++|.++++++++++++++||.|++||. +|.++...+...+.... ....
T Consensus 106 ~~~gv~lvGGdt~~~~~~~~~p~~~~~~~G~~~~~~~~~~~~a~~GD~I~l~G~~~~~~gl~G~~~~~~~~~~~~-~~~~ 184 (313)
T cd02203 106 NCIGIPTVGGEVRFDPSYYGNPLVNVGCVGIVPKDHIVKSKAPGPGDLVVLVGGRTGRDGIGGATFSSKELSENS-SELD 184 (313)
T ss_pred HHhCCceeeeEEEEECCcCCCceEEEEEEEEEehhhcccCCCCCCCCEEEEecCCCCCCCccHHHHHHHHhcCcc-cccc
Confidence 99999999999998753 678899999998888889999999999999985 66655433332211100 0000
Q ss_pred cccCCH--HHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHH
Q psy4307 255 KLIVSE--DDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAV 332 (412)
Q Consensus 255 ~~~l~~--~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~ 332 (412)
...+.. ..+++ .+.+....+++...+++|||+|+|||+++|+|||.+|++|++|++++||+.+....
T Consensus 185 ~~~~~~~~~~~~~----------~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~ema~as~~G~~I~~~~iP~~~~~~~- 253 (313)
T cd02203 185 RPAVQVGDPFMEK----------KLQEAILEARETGLIVGIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMS- 253 (313)
T ss_pred CCCCCccCHHHHH----------HHHHHHHHHHhcCCEEEEEecCCchHHHHHHHHHhcCCceEEEEecCCcccCCCCC-
Confidence 001111 11110 11112223334456999999999999999999999999999999999998764311
Q ss_pred HHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE
Q psy4307 333 AKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 333 ~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~ 399 (412)
.+.++- .++.++||+++++++.+++++.++++ ++++++||+|++++ ++.+.+++++
T Consensus 254 ------~~~~~~---se~~~~ll~tv~~~~~~~~~~~l~~~-gi~~~~IG~vt~~~-~~~l~~~~~~ 309 (313)
T cd02203 254 ------PWEIWI---SESQERMLLVVPPEDLEEFLAICKKE-DLEAAVIGEVTDDG-RLRLYYKGEV 309 (313)
T ss_pred ------HHHHHh---cCccccEEEEECHHHHHHHHHHHHHC-CCCEEEEEEECCCC-eEEEEECCeE
Confidence 111211 13456799999999999999999997 89999999998754 5777776654
No 28
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=3.9e-35 Score=318.71 Aligned_cols=269 Identities=18% Similarity=0.167 Sum_probs=196.8
Q ss_pred CCCCCCeeEEecCCCCce--eEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhH
Q psy4307 94 IGIGMDSAVIPLRHGGLS--LVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVV 170 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~--lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~ 170 (412)
.++||||||+++++ +.. +++|+|+++. ...+||.+||+||+.|+|||+||||+|+ +++++++++....+ +..+.
T Consensus 414 ~~pgdDaaVi~~~~-~~~~glv~t~D~~~~~~~~~P~~~g~~aV~~~vsDiaa~Ga~P~-~~~~~l~~g~p~~~-~~~~~ 490 (715)
T TIGR01736 414 VKPGEDAAVLRIKE-TGKLGLALTADCNPRYVYLDPYAGAAGAVAEAYRNLAAVGAEPL-AAVDCLNFGNPERP-EVYWQ 490 (715)
T ss_pred eccCCceEEEEecC-CCceEEEEEecCCCCchhcCHHHHHHHHHHHHHHHHhhcCCeeh-hheeeeccCCCCCh-hHHHH
Confidence 57889999999874 334 9999999743 4689999999999999999999999999 57778877421112 23356
Q ss_pred HHHHHHHHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecC-CccccCCCCCCCCEEEEecccChHHHHHHH
Q psy4307 171 IPLMLRGFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQP-NEYIVPDNAVVGDVLVLTKPLGTQVAVNAH 242 (412)
Q Consensus 171 l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~ 242 (412)
++++++|+.++|+++|++++||||+.+++ |++.++++|.+++ ++++++.++++||.|+++|.+|.+..+..+
T Consensus 491 l~~~~~gi~~~~~~~gv~ivGG~ts~~~~~~~~~i~pt~~v~~~G~~~~~~~~i~~~~a~~Gd~i~l~g~~g~~~~G~~~ 570 (715)
T TIGR01736 491 FVEAVKGLGDACRALGTPVVGGNVSLYNETNGVPIAPTPTIGMVGLVEDVEKLLTSNFKKEGDAIYLIGETKDELGGSEY 570 (715)
T ss_pred HHHHHHHHHHHHHHhCCCcccceeeeccccCCCCCCCcceEEEEEeccChhhccCcccCCCCCEEEEEeCCCCCccHHHH
Confidence 99999999999999999999999986542 4678899999987 788999999999999999998866443222
Q ss_pred HhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccC
Q psy4307 243 QWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHN 322 (412)
Q Consensus 243 ~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~ 322 (412)
........ ....+...++.. ..+......++++..++||||+|+|||+++|+|||.+|++|++|++++
T Consensus 571 ~~~~~~~~----~~~~p~~~~~~~--------~~~~~~i~~l~~~g~v~a~~DiSdGGL~~aL~ema~~s~~G~~I~l~~ 638 (715)
T TIGR01736 571 LRVIHGIV----SGQVPAVDLEEE--------KELADAVREAIRAGLVSAAHDVSRGGLAVALAEMAAASGIGAEVDIDE 638 (715)
T ss_pred HHHhcCCc----CCcCCCCCHHHH--------HHHHHHHHHHHHcCCeEEEEeCCcChHHHHHHHHHhCCCceEEEEcCC
Confidence 11000000 001111111110 011111223445556999999999999999999999999999999999
Q ss_pred CCC-hHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCe
Q psy4307 323 LPV-IAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPR 398 (412)
Q Consensus 323 iPv-~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~ 398 (412)
+|+ .+.. . |+ .|++|++|++|+++++. +.+++. |+++++||+ +.+ +++++..+++
T Consensus 639 ip~~~~~~----~-------lf----ses~g~~v~~v~~~~~~---~~l~~~-gi~~~vIG~-~~~-~~l~i~~~~~ 694 (715)
T TIGR01736 639 IASARPDE----L-------LF----SESNGRAIVAVPEEKAE---EAVKSK-GVPAKVIGK-TGG-DRLTIKTGDD 694 (715)
T ss_pred CcCcchHH----H-------Hh----CCCCccEEEEECchHHH---HHHHHc-CCCEEEEEE-ECC-CeEEEEECCE
Confidence 997 2211 1 22 36899999999999764 445565 899999999 543 4577766655
No 29
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=1.3e-34 Score=314.56 Aligned_cols=270 Identities=20% Similarity=0.188 Sum_probs=196.2
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIP 172 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~ 172 (412)
.++||||||+++++.+..+++|+|++++ ...+||.+||+||+.|+|||+||||+|+ +++++|++|....+ +..+.+.
T Consensus 424 ~~pGdDaAVi~~~~~~~~l~~s~D~~~~~~~~~P~~~g~~AV~~avsdiaa~Ga~P~-~~~~~l~~~~p~~~-~~~~~l~ 501 (724)
T PRK01213 424 VKPGGDAAVLRIRGGGKGLALTTDCNPRYVYLDPYEGAKLAVAEAARNLAAVGATPL-AITDCLNFGNPEKP-EVMWQFV 501 (724)
T ss_pred ccCCCCeEEEEecCCCEEEEEEecCCCCccccCHHHHHHHHHHHHHHHHhccCCeeh-hheeeeecCCCCch-HHHHHHH
Confidence 4678999999986424679999999644 4579999999999999999999999999 68888888743222 2335699
Q ss_pred HHHHHHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecCCccccCCCC-CCCCEEEEecccChHHHHHHHHh
Q psy4307 173 LMLRGFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQPNEYIVPDNA-VVGDVLVLTKPLGTQVAVNAHQW 244 (412)
Q Consensus 173 ~i~~Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~~~~~~~~~a-~~GD~Iiltg~lG~~~~~~a~~~ 244 (412)
++++|+.++|+++|++++||||+.+++ |++.++++|.+++.+.+.+.++ ++||.|+++|..|.+..+..+.+
T Consensus 502 ~~~~Gi~~a~~~~gvpivGG~~s~~n~~~~~~i~pt~~vt~vG~~~~~~~~~~~~~k~~GD~I~l~g~~~~~~ggs~~~~ 581 (724)
T PRK01213 502 EAVRGLADACRALGTPVVGGNVSLYNETGGTAIYPTPVIGMVGLIDDVSKRTTSGFKKEGDLIYLLGETKDELGGSEYLK 581 (724)
T ss_pred HHHHHHHHHHHHhCCCcccceeeeeCCCCCcccCCcceEEEEEEecCHhhCcChhcCCCCCEEEEEcCCCCCccHHHHHH
Confidence 999999999999999999999987543 4677889999976444545555 99999999998875433222221
Q ss_pred hcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCC
Q psy4307 245 LDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLP 324 (412)
Q Consensus 245 l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iP 324 (412)
... +. .....+..+++. . ..+......++++..++||||+|+|||+++|+|||.++++|++|+++. +
T Consensus 582 ~~~-~~---~~~~~p~~~~~~--~------~~~~~~l~~l~~~g~v~a~~DvSdGGL~~aL~ema~as~~G~~I~l~~-~ 648 (724)
T PRK01213 582 VIH-GH---VGGRPPKVDLEA--E------KRLQELVREAIREGLVTSAHDVSEGGLAVALAEMAIAGGLGAEVDLSD-G 648 (724)
T ss_pred Hhc-CC---cCCCCCCCCHHH--H------HHHHHHHHHHHHCCCeEEEEeCCcCcHHHHHHHHHhcCCceEEEEeCC-C
Confidence 110 00 011122111111 0 001111123444556999999999999999999999999999999873 2
Q ss_pred ChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcC
Q psy4307 325 VIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDK 396 (412)
Q Consensus 325 v~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~ 396 (412)
..+.. .|+ .|++|++|++|++++++++++.++++ |+++++||+|++ +.+.+..+
T Consensus 649 ~~~~~-----------~Lf----~e~~g~~v~~V~~~~~~~v~~~l~~~-gi~~~~IG~v~~--~~l~i~~~ 702 (724)
T PRK01213 649 LRPDA-----------LLF----SESQGRYVVSVPPENEEAFEALAEAA-GVPATRIGVVGG--DALKVKGN 702 (724)
T ss_pred CChHH-----------Hhh----CCCCceEEEEEchhHHHHHHHHHHHC-CCCeEEEEEEcC--CEEEEecC
Confidence 22211 122 35788999999999999999999987 999999999975 45666443
No 30
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=5.5e-35 Score=282.80 Aligned_cols=248 Identities=14% Similarity=0.045 Sum_probs=185.7
Q ss_pred eeEEEecCCC-CCCCChhHHHHHHHHHHHhHhhhcC--ccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCC
Q psy4307 111 SLVQTTDFFY-PLVDDPYMMGKIACSNVLSDLYAMG--VTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGT 187 (412)
Q Consensus 111 ~lv~ttD~~~-p~~~dp~~~G~~av~~~vsDIaamG--a~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv 187 (412)
.+++++|.+. |...+||.+||+||+.++|||+||| ++|+ ++++++++|+..+.+ .++++++++|+.++|+++|+
T Consensus 2 ~~a~~~~~~~~~~~~~p~~g~~~av~~~~~diaa~G~~a~P~-~~~~~l~~~~~~p~~--~~~l~~~~~gi~~a~~~~g~ 78 (272)
T cd02193 2 GEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPI-ALSANWMASAGHPGE--DAILYDAVKGVAELCNQLGL 78 (272)
T ss_pred ccEEeecCCCCccccChHHHHHHHHHHHHhhhhhcCCCccce-EEeeecccCCCCCCH--HHHHHHHHHHHHHHhHhhCC
Confidence 4789999974 5689999999999999999999999 9999 688899998553321 26789999999999999999
Q ss_pred eEEcccccccCc---------------eeEeEEEEEEecCCccccCCCCCCCCEEEEec----ccChHHHHHHHHhhcCc
Q psy4307 188 AVTGGQTVVNPW---------------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTK----PLGTQVAVNAHQWLDQP 248 (412)
Q Consensus 188 ~ivGG~T~~~~~---------------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg----~lG~~~~~~a~~~l~~~ 248 (412)
+++||||+.+++ |++.+|++|.+++.+.+.+..+++||.|+++| ++|.++.......+..
T Consensus 79 pivgG~~s~~~~~~~~~~~~~~~~~~~p~~~vt~~G~~~~~~~~~~~~~~~Gd~I~~~g~~~~~~g~~Gs~~~~~~~~~- 157 (272)
T cd02193 79 PIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRHTLPQLSTEGNALLLIGGGKGHNGLGGTALASVALSY- 157 (272)
T ss_pred cccCCEeccccceecccCCCceEEEeCCEEEEEEEEEecCcceecccCCCCCCEEEEECCCCCCCccchHHHHhhhhhh-
Confidence 999999987752 68899999999887777788899999999997 4566655322211111
Q ss_pred hhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHH
Q psy4307 249 ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAK 328 (412)
Q Consensus 249 ~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~ 328 (412)
+.... ...+..+++...+ +......++.+..+++|||+|+|||+.+|+|||.+|++|++|++++||+.+.
T Consensus 158 ~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~g~i~a~hDvs~GGL~~aL~Ema~~s~~G~~i~l~~ip~~~~ 227 (272)
T cd02193 158 RQLGD--KSAQVRDPAQEKG--------FYEAMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEP 227 (272)
T ss_pred cccCC--CCCCCCCHHHHHH--------HHHHHHHHHHCCCEEEEeeCCcchHHHHHHHHHhcCCCEEEEEeCCCcCCCC
Confidence 00000 0011111111111 1111122344556999999999999999999999999999999999998753
Q ss_pred HHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEE
Q psy4307 329 MAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGI 383 (412)
Q Consensus 329 ~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~ 383 (412)
.. .++.++ -+|+++++|+++++++++++++.++++ |+++++||+
T Consensus 228 ~~-------~p~~~~---~ses~~~~l~~v~~~~~~~~~~~~~~~-gi~~~~IG~ 271 (272)
T cd02193 228 DM-------EPLEIA---LFESQERGVIQVRAEDRDAVEEAQYGL-ADCVHVLGQ 271 (272)
T ss_pred CC-------CHHHHH---HhhhccCeEEEECHHHHHHHHHHHhcc-CCCeEEecc
Confidence 10 012211 135678999999999999999999997 999999996
No 31
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=261.78 Aligned_cols=257 Identities=22% Similarity=0.328 Sum_probs=193.6
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCCCC--CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYP--LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVI 171 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~~p--~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l 171 (412)
+..|||||||++++ ..|+++.|+..+ +..||+..||++|.+|+|||+|||++|+ ++++.+..+ ++ +..
T Consensus 40 l~~GDDAavI~v~~--~~lliaadGi~g~l~~~dPw~aG~csvLVn~~DV~amGG~Pv-~~vd~isa~---s~----d~~ 109 (324)
T COG2144 40 LDFGDDAAVIRVGD--GKLLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMGGEPV-GAVDAISAK---SE----DQA 109 (324)
T ss_pred cccCCceEEEeeCC--cEEEEecCCccccccccCchhhhceeEEEeehhhhhhCCcce-EEEEeeecC---CH----HHH
Confidence 67899999999983 589999999754 5789999999999999999999999999 588776543 22 578
Q ss_pred HHHHHHHHHHHHHcCCeEEcccccccC-ceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchh
Q psy4307 172 PLMLRGFKDSALEAGTAVTGGQTVVNP-WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPER 250 (412)
Q Consensus 172 ~~i~~Gi~~a~~~~gv~ivGG~T~~~~-~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~ 250 (412)
+++++|+.+.++++|+|++||||.-.- .+++.++..|.+.++.+++..+|||||.|++.+.+-... + =..+-.
T Consensus 110 ~ei~eglr~~a~kfgvpivGGhthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d~~g~~----~--p~~P~~ 183 (324)
T COG2144 110 REILEGLRKGARKFGVPIVGGHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGDLDGKP----Y--PNFPLN 183 (324)
T ss_pred HHHHHHHHHHHHhcCCceecCccCCCCCCceeeeEEecccccccccccCCCCcCCEEEEEeccCCCc----C--CCCCcc
Confidence 899999999999999999999998643 356666777778778888899999999999998752110 0 000112
Q ss_pred hhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHH-
Q psy4307 251 WNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKM- 329 (412)
Q Consensus 251 ~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~- 329 (412)
|.. ...-.++.++. .+. +.+ +.+. .++|+.|+|.||++|+|.+|++.|++|+.+++++||...++
T Consensus 184 wDt-tt~ka~~~~~~-------~~e-~l~---e~a~--l~~AgKDvS~gG~iGtl~mlle~S~~ga~vdl~siP~p~~vd 249 (324)
T COG2144 184 WDT-TTMKAKEKFRA-------QLE-LLR---EGAK--LVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIPYPADVD 249 (324)
T ss_pred ccc-eeeccHHHHHH-------HHH-HHH---HHHH--HHhhcccccCccHHHHHHHHHHhhccCceeeecccCCccccc
Confidence 221 00011222211 111 111 1222 47899999999999999999999999999999999987743
Q ss_pred -HHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEc
Q psy4307 330 -AAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIID 395 (412)
Q Consensus 330 -~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~ 395 (412)
..+.+.+ .+-+++++++|++.+++.+.+.+. |.++++||+|.+++ +++|..
T Consensus 250 ~~~wlk~y-------------pg~gfv~~v~pe~veev~~v~~~~-g~~a~~~GeVie~~-~L~i~~ 301 (324)
T COG2144 250 FRQWLKRY-------------PGSGFVLTVDPEDVEEVVDVFEEE-GCPATVIGEVIEEP-VLRIGD 301 (324)
T ss_pred HHHHHHhC-------------CCCcEEEEeCHHHHHHHHHHHHHc-CCceEEEEEeccCc-eEEEec
Confidence 3333221 122699999999999999999997 99999999999865 466654
No 32
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.96 E-value=1e-29 Score=267.02 Aligned_cols=310 Identities=17% Similarity=0.217 Sum_probs=238.3
Q ss_pred CCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC-CCCCCChhHHHH
Q psy4307 53 LKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF-YPLVDDPYMMGK 131 (412)
Q Consensus 53 ~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~-~p~~~dp~~~G~ 131 (412)
..+|+.|.+...|++ +..+.. .+. ++ .++||||+++++++ +..+++.+.+| +|...+||..+.
T Consensus 54 SEHC~yKssk~~lk~----~~~t~~---~~~-vi-------~g~gdnAgvvdi~d-~~~v~fKvESHNHPSaIePy~GAA 117 (743)
T COG0046 54 SEHCSYKSSKSLLKM----FPTTHT---GEY-VL-------SGPGDNAGVVDIGD-GWAVVFKVESHNHPSAIEPYQGAA 117 (743)
T ss_pred hhhcCccchHHHHhh----CCCCCC---CCe-EE-------EcccCCcceEEeCC-cEEEEEEeccCCCCCccCCCCCcc
Confidence 469999999666664 332210 111 33 58899999999997 67899999997 799999999999
Q ss_pred HHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc----eeEeEEEE
Q psy4307 132 IACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW----CTIGGVAT 207 (412)
Q Consensus 132 ~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~----~~i~~t~i 207 (412)
..+-..++|+.+|||+|+ ++++.|.+..- +.++..+.+..++.|++++-++.|+|-+||.+.+++. |++...++
T Consensus 118 TGvGGiIRDv~smGArPi-A~l~~l~fG~~-~~~~~~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~y~~npLvna~~v 195 (743)
T COG0046 118 TGVGGIIRDVLSMGARPI-ALLDSLRFGIP-DIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYVGNPLVNAGCV 195 (743)
T ss_pred cccCceeecccccCceee-eeecccccCCC-CCchhhhHHhccccchhhcCccccccccceEEEEccccCCCceEEEEEe
Confidence 999999999999999999 78899988732 2234568999999999999999999999999998875 88999999
Q ss_pred EEecCCccccCCCCCCCCEEEEecc----cChHHHHHHHHhhcCc-hhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHH
Q psy4307 208 TVCQPNEYIVPDNAVVGDVLVLTKP----LGTQVAVNAHQWLDQP-ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAA 282 (412)
Q Consensus 208 G~~~~~~~~~~~~a~~GD~Iiltg~----lG~~~~~~a~~~l~~~-~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~ 282 (412)
|.++++++.+....+|||.|++.|. .|.+++..+.+-+... ...++-.-+....+.++ ++.+...
T Consensus 196 G~i~~~~i~~~~a~~~G~~li~~Gg~TgrDGigGat~aS~~~~~~~~e~dr~aVQvGdPf~Ek----------~l~ea~l 265 (743)
T COG0046 196 GLIRKEHIVKGEAIGPGDKLILLGGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFMEK----------RLQEAIL 265 (743)
T ss_pred eecchhheeeccCCCCCCEEEEEcCCccccccCchhhhhhhhCcchhhhcCCccccCChHHHH----------HHHHHHH
Confidence 9999988888787899999999764 4666666566544421 11100000111111111 1222223
Q ss_pred HHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHH-HHHHHHHcCChhhhccCCcccccceEEEEEccc
Q psy4307 283 RLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAK-MAAVAKACGNMFQLLQGHSAETSGGLLICLPRE 361 (412)
Q Consensus 283 ~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~-~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e 361 (412)
+......|.+++|+..|||..++.||+...+.|++|+++++|+++. +-. |++ +-+||+-+|+++|.|+
T Consensus 266 e~~~~~~I~~i~DlGAgGLs~A~~Ela~~gg~G~~i~Ld~VP~rE~gMsp--------~Ei---~~SESQERMllvv~p~ 334 (743)
T COG0046 266 ECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLREPGMSP--------YEI---WLSESQERMLLVVAPE 334 (743)
T ss_pred HHHhcCCeEEEeccCCchhhhhHHHHHhccCCeEEEEhhcCcccCCCCCH--------HHH---HHhccchheEEEEccc
Confidence 3444556999999999999999999999999999999999998853 211 332 2257899999999999
Q ss_pred cHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE-EEeC
Q psy4307 362 QAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV-IEVP 403 (412)
Q Consensus 362 ~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~-~~~~ 403 (412)
+.++|++.++++ +.++.+||+||+. .++++..+|+. ++++
T Consensus 335 ~~e~~~~i~~k~-~l~~aVVG~vT~~-~~~~~~~~ge~v~dlP 375 (743)
T COG0046 335 DVEEFLEICEKE-RLPAAVVGEVTDE-PRLVVDWKGEPVVDLP 375 (743)
T ss_pred cHHHHHHHHHHc-CCCeEEEEEEecC-ceEEEEECCCEEEecc
Confidence 999999999997 9999999999997 56777777776 5554
No 33
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=235.67 Aligned_cols=283 Identities=18% Similarity=0.225 Sum_probs=213.2
Q ss_pred CCCCCCeeEEecCCC--CceeEEEecCCC------CCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChh
Q psy4307 94 IGIGMDSAVIPLRHG--GLSLVQTTDFFY------PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEK 165 (412)
Q Consensus 94 ~~~GdDaavi~~~~~--~~~lv~ttD~~~------p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~ 165 (412)
-++|.-+++++++.. ...|+.+||+.- ........+|...|+.|+||+.+.||+|+ +++++++..+ .++
T Consensus 37 gglGgf~~lf~l~~~~~~p~Lv~~tDGVGTKl~~A~~~~k~dTiGID~VAM~VNDlv~~GAePl-~flDY~A~gk-~~~- 113 (345)
T COG0150 37 GGLGGFAGLFDLGQAYYKPVLVSGTDGVGTKLLLAEDAGKHDTIGIDLVAMCVNDLVVQGAEPL-FFLDYLATGK-LDP- 113 (345)
T ss_pred cCCcceeEEEEccCCCccceEEecCCCchHHHHHHHHhCCccccccchheeecchhhhcCcchH-HHHhhhhcCC-CCH-
Confidence 478899999999731 157899999842 12344557999999999999999999999 7999998764 344
Q ss_pred hHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHH-
Q psy4307 166 ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVA- 238 (412)
Q Consensus 166 e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~- 238 (412)
+..+++++|+.+.|+++||.++||.|.+.|. .-+.++++|.++++++++.+.+++||.|+-..+-|.|..
T Consensus 114 ---~~~~~iv~GiaeGc~~ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i~~GDviigl~SSG~HSNG 190 (345)
T COG0150 114 ---EVAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVKEGDVIIGLASSGLHSNG 190 (345)
T ss_pred ---HHHHHHHHHHHHHHHHhCCEEeccccccCCCcccCCceeeeeeEEEEEEccccccccccCCCCEEEEecCCCcCCCc
Confidence 5789999999999999999999999999886 357789999999999999999999999999998887643
Q ss_pred -HHHHHhhcCc-hhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeE
Q psy4307 239 -VNAHQWLDQP-ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEV 316 (412)
Q Consensus 239 -~~a~~~l~~~-~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~ 316 (412)
+.+-+.+... ..+. ..++.+.=++..+..++|...+.+....++++..+|+|.+||+||+...+.++.. .++++
T Consensus 191 ySLvRKi~~~~~~~~~---~~~~~~~g~~l~e~LL~PTrIYvk~vL~l~~~~~vkg~AHITGGG~~eNl~Rv~p-~~l~a 266 (345)
T COG0150 191 YSLVRKIIEESGLDYD---DELPEELGKTLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGGGFVENLPRVLP-EGLGA 266 (345)
T ss_pred hHHHHHHHHhcCcccc---ccCccccccCHHHHhcCCceeehHHHHHHHhcCCcceEEEecCCChhhhChhhcC-ccceE
Confidence 2222322211 1111 0111111012233455665555565677888888999999999999988888854 57899
Q ss_pred EEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCc
Q psy4307 317 SFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNR 389 (412)
Q Consensus 317 ~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~ 389 (412)
+|+...+|+.+-...+.+..+.+ .+++..|++ .=||++++++++++++++.|+++ |.++|+||+|.++.+
T Consensus 267 ~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFNm--GvG~v~iv~~e~~~~~~~~l~~~-g~~a~~iG~V~~~~~ 337 (345)
T COG0150 267 VIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNM--GVGMVLIVPEEDAEKALALLKEQ-GETAYVIGRVEAGEG 337 (345)
T ss_pred EEcCCCCCCcHHHHHHHHhcCCCHHHHHHHhcC--ccceEEEEcHHHHHHHHHHHHhc-CCceEEEEEEEeCCC
Confidence 99999887655444444444344 455555643 23799999999999999999997 999999999998644
No 34
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-26 Score=218.57 Aligned_cols=282 Identities=20% Similarity=0.203 Sum_probs=211.3
Q ss_pred CCCCCCeeEEecCCCCceeEEEecC-CCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDF-FYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIP 172 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~-~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~ 172 (412)
+.--||++++++.+ .++++++|+ |.....=||..|..+...+++|++.|||+|+ +++.-+.+..+-+. ..+-
T Consensus 108 ~ee~DDaGvvr~~~--~yivvaiDGiHSRLSefPFLaGFhvtRAalRDv~vmGa~p~-alisDiHlaDDgDV----gklf 180 (449)
T COG1973 108 PEELDDAGVVRIEN--DYIVVAIDGIHSRLSEFPFLAGFHVTRAALRDVYVMGARPV-ALISDIHLADDGDV----GKLF 180 (449)
T ss_pred HHHcCCCCeEEecC--ceEEEEecchhhhhhcCcchhhhHHHHHHHHHHHHcCcccc-eeeeeeeeccCcch----hhhh
Confidence 44569999999985 489999999 4556778999999999999999999999999 56666777655554 4566
Q ss_pred HHHHHHHHHHHHcCCeEEccccccc-------CceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHH-HHHHHHh
Q psy4307 173 LMLRGFKDSALEAGTAVTGGQTVVN-------PWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQV-AVNAHQW 244 (412)
Q Consensus 173 ~i~~Gi~~a~~~~gv~ivGG~T~~~-------~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~-~~~a~~~ 244 (412)
.+..|+...|+..|+|+++|.|-.- +.++-++-++|+.+ .++..|.+++|||+|++|-..|.+. +.+|+ +
T Consensus 181 Df~AGvtaVsea~~vPl~aGSTLRiGGDmVlGdRl~~~Vg~iGi~k-~~~t~Rr~~~~Gd~IlmTEGaGGGTi~TTAi-Y 258 (449)
T COG1973 181 DFTAGVTAVSEAVGVPLLAGSTLRIGGDMVLGDRLVGAVGAIGISK-SELTPRRRAEPGDVILMTEGAGGGTIATTAI-Y 258 (449)
T ss_pred hhhhhhhHHHHHhCCceecccceEEcCeeEeechhhcccceeeeec-CCCChhccCCCCCEEEEecCCCCceeehhhh-h
Confidence 6789999999999999999888763 33455667889886 6788899999999999997776553 33333 1
Q ss_pred hcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCC-
Q psy4307 245 LDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNL- 323 (412)
Q Consensus 245 l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~i- 323 (412)
. +..+-+...+.-+++ ++.+ .+.+ ..+.+ .+|+|+|+|.|||=++..|+++-+++++.++.+++
T Consensus 259 ~---Gm~DVv~ETlnv~fi-~a~e-------ai~~--s~L~~--~vhsMTDVTNGGiRgDA~EISkta~v~lvfDeekv~ 323 (449)
T COG1973 259 H---GMHDVVEETLNVDFI-RACE-------AIVR--SGLLS--DVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVR 323 (449)
T ss_pred c---ccHHHHHHhcChHHH-HHHH-------HHHH--hhhhh--hhhhhhhccCCcccccHHHhhhhcCeeEEEcHHHHH
Confidence 1 111100001111111 1111 0111 12222 38999999999999999999999999999999876
Q ss_pred -CChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEEEe
Q psy4307 324 -PVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVIEV 402 (412)
Q Consensus 324 -Pv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~~~ 402 (412)
-+.|.+.+..+.+.+++-= . +--.|++.+|++.++.+.+.++.. |+.+.+||+|+++...+.+.++|+++++
T Consensus 324 sliNpkVl~MLeel~ID~lG---v---SiDslmii~ped~a~~v~k~~~~a-gvr~~~vG~Vee~~~~~~l~~~gee~~l 396 (449)
T COG1973 324 SLINPKVLKMLEELNIDPLG---V---SIDSLMIIAPEDVADLVKKALRGA-GVRAEEVGRVEEGGQGVILVDGGEEREL 396 (449)
T ss_pred hhcCHHHHHHHHHcCCCccc---c---ccceEEEecchhhhHHHHHHHHhc-CcceeEEeeeecCCcceEEEECCEeecc
Confidence 3678888888887765321 1 122389999999999999999987 9999999999996556888899999998
Q ss_pred CCCC
Q psy4307 403 PAKE 406 (412)
Q Consensus 403 ~~~~ 406 (412)
.|.+
T Consensus 397 kp~F 400 (449)
T COG1973 397 KPRF 400 (449)
T ss_pred cchh
Confidence 8876
No 35
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.93 E-value=3.6e-24 Score=241.34 Aligned_cols=308 Identities=12% Similarity=0.071 Sum_probs=213.6
Q ss_pred CCcccccC------------CHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecC--------------
Q psy4307 53 LKGRGCKV------------PQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLR-------------- 106 (412)
Q Consensus 53 ~~GcggK~------------~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~-------------- 106 (412)
..+|.-|. +..+|+. +.+..... .+. ++ .+++|+|+||+..
T Consensus 214 SEHCrhk~F~~~~~id~~~~~~slf~~-i~~t~~~~----~~~-~~-------~~~~dNa~vi~~~~~~~~~~~~~~~~~ 280 (1310)
T TIGR01735 214 SEHCRHKIFNADWIIDGKKQDKSLFQM-IKSTHEAN----PEN-TV-------SAYKDNSSVIEGHKVGRLRPDPPTRPE 280 (1310)
T ss_pred hhhcCCccCCCceeecCcccchhHHHH-HHhhhhcC----CCc-eE-------EEecCcEEEEEcccccccccccccccc
Confidence 46888888 7788874 54322211 111 22 4678999999854
Q ss_pred -----CCCceeEEEecCC-CCCCCChhHHHHHHHHHHHhHhhhc--CccchHHHHhhhhcCCC-CCh-----------hh
Q psy4307 107 -----HGGLSLVQTTDFF-YPLVDDPYMMGKIACSNVLSDLYAM--GVTECDNLLMLVAVSTK-MTE-----------KE 166 (412)
Q Consensus 107 -----~~~~~lv~ttD~~-~p~~~dp~~~G~~av~~~vsDIaam--Ga~P~~~~l~~l~lp~~-~~~-----------~e 166 (412)
+.+..+++++|+| +|...+||..+..++..+++|+.|| ||+|+ +.+++|++..- .+. .+
T Consensus 281 ~~~~~e~~~~i~~k~Ethnhpt~i~Py~GAatgvgg~iRD~~a~GrGa~Pi-A~~d~l~fg~p~~~~~~~~~e~~~~~P~ 359 (1310)
T TIGR01735 281 YRQHQEDLVHILMKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRGAKPK-AGLTGFCVSNLNIPGLEQPWEDPFQKPE 359 (1310)
T ss_pred cccccccceEEEEEeccCCCCCccCchhhHHHHHhHhHhChhhhCCCCeee-eeeeeeecCCCCCCCCCCccccccCCch
Confidence 2246899999997 6899999999999999999999999 99999 78999998621 111 01
Q ss_pred H----hhHHHHHHHHHHHHHHHcCCeEEcccccccC--------------ceeEeEEEEEEecCCccccCCCCCCCCEEE
Q psy4307 167 R----DVVIPLMLRGFKDSALEAGTAVTGGQTVVNP--------------WCTIGGVATTVCQPNEYIVPDNAVVGDVLV 228 (412)
Q Consensus 167 ~----~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~--------------~~~i~~t~iG~~~~~~~~~~~~a~~GD~Ii 228 (412)
. ..++.+.++|+.++|+++|+|+++|.+..++ .|++...++|.+++.+ +.+...++||.|+
T Consensus 360 ~~~~p~~Il~e~~~G~~~~gn~~G~P~v~G~vs~f~~~~~~~~g~~~~~~~P~~~~g~vG~i~~~~-~~~~~~~~G~~iv 438 (1310)
T TIGR01735 360 RIASPLDIMIEAPLGAAAFNNEFGRPNLLGYFRTFELKASLPGGQVRGYHKPIMLAGGIGSIDAEH-IQKGEIEPGALLI 438 (1310)
T ss_pred hhccHHHHHHHHHHHHHHHhhhhCCcccceeeeeccccccccccccccccCCccEEEEEEEechhh-cccCCCCCCCEEE
Confidence 1 1237778999999999999999999995321 2666678999998765 6566689999999
Q ss_pred Eeccc----ChHHHHHHHHhhcCchhhhhh-cccCCH--HHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChH
Q psy4307 229 LTKPL----GTQVAVNAHQWLDQPERWNRI-KLIVSE--DDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGL 301 (412)
Q Consensus 229 ltg~l----G~~~~~~a~~~l~~~~~~~~l-~~~l~~--~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL 301 (412)
+.|.. |.++.....+ ... .....+ ...++. .+.++..+ .+.+.+.++..+..+.++||++.|||
T Consensus 439 llGg~~~rdglgGs~~ss~-~~g-~~~~~~~~~~Vq~gdp~~ek~~~-------~~i~~~~~~~~~~~i~sihD~gaGGl 509 (1310)
T TIGR01735 439 VLGGPAMLIGLGGGAASSM-VSG-TNTADLDFASVQRGNPEMERRCQ-------EVIDRCWQLGEKNPIISIHDVGAGGL 509 (1310)
T ss_pred EECCCCCCCCccHHHHHHH-HhC-CCcccccCCCCCCCCHHHHHHHH-------HHHHHHHHcCCCCceEEEeccCccHH
Confidence 98753 4554431121 111 100000 011111 11111111 11111112222335999999999999
Q ss_pred HHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEE
Q psy4307 302 LGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWII 381 (412)
Q Consensus 302 ~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vI 381 (412)
..++.||+..+++|++|+++++|+......- +++ +-.|++++++++|+|++.++|.+.+++. ++++++|
T Consensus 510 s~al~Ema~~~g~G~~i~L~~vp~~~~~m~~-------~ei---l~sESQeR~vl~v~~~~~~~f~~i~~~~-~~~~~vI 578 (1310)
T TIGR01735 510 SNALPELIHDGGRGAVIDLRAVPLDDPGLSP-------LEI---WCNESQERYVLLVRAENLEIFTAICERE-RCPFAVV 578 (1310)
T ss_pred HHHHHHHHhcCCceEEEEcCCCcccCCCCCH-------HHH---hhccccccEEEEECcccHHHHHHHHHHc-CCCEEEE
Confidence 9999999999999999999999976432110 111 1257899999999999999999999986 8999999
Q ss_pred EEEEeCCceEEEEcC
Q psy4307 382 GIVEKGNRTARIIDK 396 (412)
Q Consensus 382 G~V~~~~~~v~i~~~ 396 (412)
|+|++. +++++.++
T Consensus 579 G~vt~~-~~l~v~~~ 592 (1310)
T TIGR01735 579 GTATGD-GRLTLVDD 592 (1310)
T ss_pred EEECCC-ceEEEEec
Confidence 999975 45777663
No 36
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.92 E-value=6.5e-24 Score=223.45 Aligned_cols=259 Identities=20% Similarity=0.153 Sum_probs=192.7
Q ss_pred CCCCCCeeEEecCCC---CceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhh
Q psy4307 94 IGIGMDSAVIPLRHG---GLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDV 169 (412)
Q Consensus 94 ~~~GdDaavi~~~~~---~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~ 169 (412)
+|++.||||+++... +..+++|+|+.++ ...|||..|+.||+.++++|+|+||+|+ ++++++++...-.+ |.+|
T Consensus 444 pG~~~DaaV~r~~~~~~~~~g~A~t~~~np~~~~ldpy~Ga~~aVaEa~rNl~a~Ga~pl-a~~d~lnfg~pe~p-E~~~ 521 (743)
T COG0046 444 PGPVADAAVLRISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATGAKPL-ALTDNLNFGNPEKP-EVMG 521 (743)
T ss_pred CCCCcceEEEEecccCCCcceEEEEcCCCCcceEEChhHHHHHHHHHHHHHHHhhCCcch-hhhhhhccCCCCCh-hhhh
Confidence 344599999999741 2259999999876 4689999999999999999999999999 68999999744333 5789
Q ss_pred HHHHHHHHHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecC-CccccCCCCCCCCEEEEecc----cChHH
Q psy4307 170 VIPLMLRGFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQP-NEYIVPDNAVVGDVLVLTKP----LGTQV 237 (412)
Q Consensus 170 ~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Iiltg~----lG~~~ 237 (412)
.+.+.++|+.++|+.+|+|++||+.+.|++ |+..++++|.+++ .+.+++...+.||.||+.|. +|.+.
T Consensus 522 q~~~a~~g~~eac~~l~~pvv~GnvSlynet~~~~i~PTpvi~~vg~v~dv~k~~~~~~~~~g~~i~llG~~~~~lggS~ 601 (743)
T COG0046 522 QFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQPIPPTPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDELGGSE 601 (743)
T ss_pred HHHHHHHHHHHHHHHhCCCcccceeeeeeccCCcccCCcceEEEEEEeechhhhcCccccCCCcEEEEeCCCccccchhH
Confidence 999999999999999999999999998875 5777789999986 67787777789999999986 45544
Q ss_pred HHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEE
Q psy4307 238 AVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVS 317 (412)
Q Consensus 238 ~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~ 317 (412)
....++ . ...+..+..+++..+. .......+.++..+.++||+|+|||+.+|.|||.++++|++
T Consensus 602 ~~~~~~---~-----~~~g~~p~~dl~~ek~--------~~~~i~~~i~~~~v~aahD~s~GGL~~aLaemaf~~~~G~~ 665 (743)
T COG0046 602 LAQVYH---G-----LGDGPPPVVDLAEEKK--------FFDAIRALIADGKVLAAHDVSDGGLAVALAEMAFAGGIGLE 665 (743)
T ss_pred HHHHHh---c-----ccCCCCCCCCHHHHHH--------HHHHHHHHHhcCceEEEEEcccccHHHHHHHHHhccCCceE
Confidence 422221 1 1112233322221111 11112344556679999999999999999999999999999
Q ss_pred EEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeC
Q psy4307 318 FVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKG 387 (412)
Q Consensus 318 I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~ 387 (412)
|+++.++-. ... ..|| .|+.|+++++++++++. ....++. +.++.+||.+...
T Consensus 666 i~~~~~~~~---~~~-------~~LF----sE~~gr~i~~~~~~~~~--~~~~~~~-~~~~~~~G~~~~~ 718 (743)
T COG0046 666 IDLDELGDD---RLD-------ALLF----SESLGRVIVVVAEEEAE--VEGAEAV-GVPLKVIGLVGGD 718 (743)
T ss_pred EEccccccc---chh-------hHhh----CcCCCcEEEEecchhhh--hhhhhhc-Cceeeeeeecccc
Confidence 999887643 111 1233 36789999999988765 3333333 6788999988754
No 37
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.92 E-value=1.4e-24 Score=245.31 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=194.6
Q ss_pred CCCCCCeeEEecC-----------------CCCceeEEEecCC-CCCCCChhHHHHHHHHHHHhHhhhc--CccchHHHH
Q psy4307 94 IGIGMDSAVIPLR-----------------HGGLSLVQTTDFF-YPLVDDPYMMGKIACSNVLSDLYAM--GVTECDNLL 153 (412)
Q Consensus 94 ~~~GdDaavi~~~-----------------~~~~~lv~ttD~~-~p~~~dp~~~G~~av~~~vsDIaam--Ga~P~~~~l 153 (412)
.+++|+++|+++. +.+..++++..+| +|...+||..+...+-..++|+.+| ||+|+ +.+
T Consensus 250 ~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~e~~~~~fK~ETHNhPsaiePf~GAaTG~GG~iRD~~~~G~Ga~pi-ag~ 328 (1290)
T PRK05297 250 SAYKDNAAVMEGSKVGRFFPDPDTGRYGYHQEPAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGSKPK-AGL 328 (1290)
T ss_pred EEecCCcEEEEcccccccccccccccccccccceEEEEEeccCCCCCccCCCCcccccCCceeccccccCCCCeee-ecc
Confidence 3567999999954 1245789999997 7999999999999999999999999 99999 577
Q ss_pred hhhhcCC-CCC----h--------h---hHhhHHHHHHHHHHHHHHHcCCeEEcccccccC--------------ceeEe
Q psy4307 154 MLVAVST-KMT----E--------K---ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP--------------WCTIG 203 (412)
Q Consensus 154 ~~l~lp~-~~~----~--------~---e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~--------------~~~i~ 203 (412)
+.+++.. ..+ + . ....++.+-..|+.++|+++|+|++||+++.++ .|++.
T Consensus 329 ~~~~~~~l~~~~~~~~~e~~~~~P~~~~~p~~i~~~~~~Gis~~gn~~G~Pvv~G~Vs~yne~~~~~~~~~~~~i~P~~~ 408 (1290)
T PRK05297 329 TGFSVSNLRIPGFEQPWEEDYGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGYFRTFEQKVNSHNEEVRGYHKPIML 408 (1290)
T ss_pred eeEEecCCCCCCCCCccccccCCccccCCHhHhhhhccccHHHHhhhhCCCccceEEEEEeccccCccccccccccceEE
Confidence 6777652 111 1 0 011255556669999999999999999995432 26677
Q ss_pred EEEEEEecCCccccCCCCCCCCEEEEeccc----ChHHHHHHHHhhcCchhhhhhc-c---cCCHHHHHHHHHHHHHhhh
Q psy4307 204 GVATTVCQPNEYIVPDNAVVGDVLVLTKPL----GTQVAVNAHQWLDQPERWNRIK-L---IVSEDDVRKAYQRSMDSMA 275 (412)
Q Consensus 204 ~t~iG~~~~~~~~~~~~a~~GD~Iiltg~l----G~~~~~~a~~~l~~~~~~~~l~-~---~l~~~~l~~a~~~~~~~~~ 275 (412)
+.++|.++++++. +...++||.|+++|.. |.++......... ...+.+. . ...++.-++ .+
T Consensus 409 vg~vG~i~~~~~~-~~~~~~Gd~IvllG~~~~rdglgGs~~ss~~~g--~~~~~~~~~~Vq~~d~~~ek~-~~------- 477 (1290)
T PRK05297 409 AGGIGNIRADHVQ-KGEIPVGAKLIVLGGPAMRIGLGGGAASSMASG--QSSEDLDFASVQRGNPEMERR-CQ------- 477 (1290)
T ss_pred EEEEEEEehhhcc-ccCCCCCCEEEEECCCCCCCCccHHHHHHHHhc--ccccccccCCCCcCCHHHHHH-HH-------
Confidence 7799999876654 4557999999999863 4444421121111 1010000 0 122221111 11
Q ss_pred hhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEE
Q psy4307 276 RLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLL 355 (412)
Q Consensus 276 ~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglL 355 (412)
.+-+.+..+.....+++|||+|+|||+.+|.|||..+++|++|+++++|+.+.... .++++ -.|++++++
T Consensus 478 ~~i~~~~~~~~~~lI~s~hDvgaGGLa~AL~Ema~~~g~G~~idL~~vp~~~~~l~-------p~eil---~SESQeRml 547 (1290)
T PRK05297 478 EVIDRCWQLGDDNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKIPNDEPGMS-------PLEIW---CNESQERYV 547 (1290)
T ss_pred HHHHHHHHhcccCCeeEEecCCccHHHHHHHHHHHhcCceEEEEeCCCccccCCCC-------HHHHH---hccccceEE
Confidence 11111112222356999999999999999999999999999999999998654210 12222 257889999
Q ss_pred EEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEc
Q psy4307 356 ICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIID 395 (412)
Q Consensus 356 i~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~ 395 (412)
++|++++.+++.+.+++. ++++++||+|++++ ++++.+
T Consensus 548 v~V~~e~~e~~~~i~~~~-~l~~~vIG~vt~~~-~l~v~~ 585 (1290)
T PRK05297 548 LAIAPEDLELFEAICERE-RCPFAVVGEATEER-HLTLED 585 (1290)
T ss_pred EEEcchhHHHHHHHHHhc-CCCEEEEEEEeCCC-eEEEEe
Confidence 999999999999999987 99999999999753 466653
No 38
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.92 E-value=6.2e-23 Score=230.86 Aligned_cols=253 Identities=18% Similarity=0.120 Sum_probs=185.3
Q ss_pred ceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCc---cchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHc
Q psy4307 110 LSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGV---TECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEA 185 (412)
Q Consensus 110 ~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa---~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~ 185 (412)
..++++++..++ ...||+.+++.||+.++.+|++.|+ +|+ ++++.+++|+..+. ++.|.++++++.++|+++
T Consensus 593 ~G~a~a~Ge~p~~~~~DP~~ga~~AV~Ea~~Nlaaa~~~~l~pi-~lt~n~~~P~~~~~---~~~L~~av~ai~e~C~~L 668 (1202)
T TIGR01739 593 SCVCSALGEQTYKVQADPKRGATYAITEALLNLSLSPWNTLEDV-IITLSVTWSPTDHV---YSLLKDALRACKDFCEEL 668 (1202)
T ss_pred eEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHHhCCccccCCc-EEEEEecCCCCCch---HHHHHHHHHHHHHHHHHc
Confidence 467889997654 4689999999999999999999998 999 57788889975442 388999999999999999
Q ss_pred CCeEEcccccccCc--------eeEeEEEEEEecC-CccccCCCCCCCCEEEEecc---cChHHHHHHHHhhcCchhhhh
Q psy4307 186 GTAVTGGQTVVNPW--------CTIGGVATTVCQP-NEYIVPDNAVVGDVLVLTKP---LGTQVAVNAHQWLDQPERWNR 253 (412)
Q Consensus 186 gv~ivGG~T~~~~~--------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Iiltg~---lG~~~~~~a~~~l~~~~~~~~ 253 (412)
|++|++||++.+.. +++.+++++.++. .+.+++...++||.|++.+. .+.++...+. .+.. ....
T Consensus 669 gipiv~G~~S~s~~~~~v~~Ptptivisa~a~v~dv~k~vTp~lk~~G~~L~LIg~t~~~~LgGS~laq-~~~~--~~~~ 745 (1202)
T TIGR01739 669 GVSFTVTSAASSPTQDSGSAPFMSIVFSASCPVLLSAKKITPDLKSHGSHLIWLSLHPSYTLAGSIFEQ-ILGL--SFIR 745 (1202)
T ss_pred CCcEEeeeccccCCCCCccCCCCeEEEEEEEEecCHHhCcCcccCCCCCEEEEEcCCCCCCchHhHHHH-hhcc--ccCC
Confidence 99999999887533 5788888888764 67888888899999998653 2333322122 1111 1111
Q ss_pred hcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHH
Q psy4307 254 IKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVA 333 (412)
Q Consensus 254 l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~ 333 (412)
+ ..++++.+++.++ ....++++..+.||||+|+|||+.+|+|||.++++|++|+++... .+ +
T Consensus 746 ~-P~vd~~~lk~~~~-----------~v~~li~~glI~S~HDvSdGGL~~aLaEMA~ag~~G~~Idl~~~~-~p----~- 807 (1202)
T TIGR01739 746 L-PALSPVSLKKLLS-----------ALQTLVKEGVIVSGHDVSDGGLVACVAEMALSGGKGVRITLPHGT-DP----L- 807 (1202)
T ss_pred C-CCCCHHHHHHHHH-----------HHHHHHhcCCEEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCCCC-CH----H-
Confidence 1 1133433332221 123445566799999999999999999999999999999986321 11 0
Q ss_pred HHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEe--CCceEEEEcCCeE
Q psy4307 334 KACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEK--GNRTARIIDKPRV 399 (412)
Q Consensus 334 ~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~--~~~~v~i~~~g~~ 399 (412)
..|+ .|+.| +|+.|++++.+++.+.|+++ |+++.+||+|++ .++.++|..+++.
T Consensus 808 ------~~LF----SEs~G-~VieV~~~~~~~v~~~l~~~-gi~~~vIG~vt~~~~~~~l~I~~~~~~ 863 (1202)
T TIGR01739 808 ------EFLC----SETPG-VVIEVDPSSMYAVLQFLRSE-GLVFQVIGRVGESGPSPTFSVVHNSTV 863 (1202)
T ss_pred ------HHHh----CCCCc-EEEEEchhHHHHHHHHHHHC-CCCeEEEEEECCCCCCcEEEEEECCEE
Confidence 0122 34444 99999999999999999997 999999999986 2455777656654
No 39
>PHA03366 FGAM-synthase; Provisional
Probab=99.91 E-value=3.8e-22 Score=225.30 Aligned_cols=253 Identities=17% Similarity=0.159 Sum_probs=183.2
Q ss_pred CceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhh--hcCCCCChhhHhhHHHHHHHHHHHHHHHc
Q psy4307 109 GLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLV--AVSTKMTEKERDVVIPLMLRGFKDSALEA 185 (412)
Q Consensus 109 ~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l--~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~ 185 (412)
...+++++|..++ ...||+..++.||+.++++|++.|+.|+..+.+++ ++|+. + +.++.|.+.++++.|+|+++
T Consensus 688 ~~G~A~siGe~p~~~~lDP~~Ga~~AVaEAl~NL~aa~~~~L~~i~lslNf~wP~~-p--~~~a~L~eav~ai~e~C~~L 764 (1304)
T PHA03366 688 VPGTCSALGEQGYKVQLDPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWPPT-D--QAASELYRALAACKEFCREL 764 (1304)
T ss_pred CCEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHhhcCCccchheEEEEEecCCCC-c--chHHHHHHHHHHHHHHHHHc
Confidence 4568999997654 47899999999999999999999999985566666 45553 2 24589999999999999999
Q ss_pred CCeEEcccccccCc-----------eeEeEEEEEEecC-CccccCCCCCCCCEEEEecc-----cChHHHHHHHHhhcCc
Q psy4307 186 GTAVTGGQTVVNPW-----------CTIGGVATTVCQP-NEYIVPDNAVVGDVLVLTKP-----LGTQVAVNAHQWLDQP 248 (412)
Q Consensus 186 gv~ivGG~T~~~~~-----------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Iiltg~-----lG~~~~~~a~~~l~~~ 248 (412)
|++|++|+++.+++ +++++++++.++. .+.+++...++||.|++.+. +|.+.. +. .+..
T Consensus 765 gIpIv~G~~S~yne~~~~~~~i~~pptIvisg~~~~~dv~k~vTp~lk~~G~~L~lIg~~~~~~LgGS~l--aq-~~~~- 840 (1304)
T PHA03366 765 GVNFTFTSASSSPRQDQPPQPGPLFNTIVFTASAPVPSSTPRLTPDLKKPGSALVHLSISPEYTLAGSVF--EQ-IFGL- 840 (1304)
T ss_pred CCCEeeeecccccccCCCCccccCCCeEEEEEEEEccCcccccCcccCCCCCEEEEEeCCCCCCcchhHH--HH-hhcc-
Confidence 99999999998663 6788888887776 57888888889999999642 233322 11 1111
Q ss_pred hhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHH
Q psy4307 249 ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAK 328 (412)
Q Consensus 249 ~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~ 328 (412)
..... ..+..+.+++.+ .....++++..+.|+||+|+|||+.+|+|||.++++|++|+++. ...+
T Consensus 841 -~g~~~-P~vd~~~lk~~f-----------~~v~~Li~~glI~A~HDVSdGGL~~ALaEMAfag~~G~~Idl~~-~~d~- 905 (1304)
T PHA03366 841 -KSGTL-PDISPSYLKNLF-----------RAVQHLISEGLVVSGHDVSDGGLIACLAEMALAGGRGVTITVPA-GEDP- 905 (1304)
T ss_pred -ccCCC-CCCCHHHHHHHH-----------HHHHHHHHcCCeEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCC-CCCH-
Confidence 11110 012222222111 12234566777999999999999999999999999999999743 1111
Q ss_pred HHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCC--ceEEEEcCCeE
Q psy4307 329 MAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN--RTARIIDKPRV 399 (412)
Q Consensus 329 ~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~--~~v~i~~~g~~ 399 (412)
+ ..|+ .|+.| +|+.|++++.+++.+.+++. |+.+.+||+|+++. +.+.|..+++.
T Consensus 906 ---~-------~~LF----sE~~G-~VveV~~~~~~~v~~~l~~~-gi~~~vIG~vt~~~~~~~l~I~~~~~~ 962 (1304)
T PHA03366 906 ---L-------QFLF----SETPG-VVIEVPPSHLSAVLTRLRSR-NIICYPIGTVGPSGPSNTFSVSHNGTV 962 (1304)
T ss_pred ---H-------HHHh----CCCCe-EEEEEchhHHHHHHHHHHHC-CCCeEEEEEEcCCCceEEEEEEECCEE
Confidence 1 1122 24556 99999999999999999997 99999999998643 22666665644
No 40
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.90 E-value=7.1e-22 Score=222.91 Aligned_cols=267 Identities=16% Similarity=0.081 Sum_probs=185.4
Q ss_pred CCCCeeEEecC-CCCceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhh-hcC--CCCChhhHhhH
Q psy4307 96 IGMDSAVIPLR-HGGLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLV-AVS--TKMTEKERDVV 170 (412)
Q Consensus 96 ~GdDaavi~~~-~~~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l-~lp--~~~~~~e~~~~ 170 (412)
++.||||++++ +....++++++..++ ...|||.+|+.||+.+++||+++|+.|+. .+.++ ++. ...+.+ .+.
T Consensus 691 p~aDaaV~~~~~~~~~G~ama~G~~P~~~~idP~~gA~~AV~EAl~NlaaaG~~~l~-~i~~s~Nwm~~~~~pge--~~~ 767 (1310)
T TIGR01735 691 PLADVAVTAASFDTYTGEAMAIGERPPKALLDPKASARLAVGEAITNLAAALVGDLS-DVKLSANWMAAAGHPGE--DAA 767 (1310)
T ss_pred CCcCeEEEEecCCCceEEEEEEcCCCCeeccCHHHHHHHHHHHHHhheeecCCcCHH-HccccccchhhcCCCCC--HHH
Confidence 37899999984 223468889998755 46899999999999999999999999873 44433 321 111211 145
Q ss_pred HHHHHHHHHHHHHHcCCeEEcccccccC-----------c----eeEeEEEEEEecC-CccccCCCCCCC-CE--EEE--
Q psy4307 171 IPLMLRGFKDSALEAGTAVTGGQTVVNP-----------W----CTIGGVATTVCQP-NEYIVPDNAVVG-DV--LVL-- 229 (412)
Q Consensus 171 l~~i~~Gi~~a~~~~gv~ivGG~T~~~~-----------~----~~i~~t~iG~~~~-~~~~~~~~a~~G-D~--Iil-- 229 (412)
+.+.++++.++|+++|++++||+++.+. . |++.++++|.++. .+.+++...++| |. |++
T Consensus 768 l~~av~al~eac~~LGipiigGKdSls~~~~~~~~G~~~~v~~PpTlvisA~g~v~Dv~k~vTp~lk~~ggd~~Li~i~l 847 (1310)
T TIGR01735 768 LYDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAPGSLVISAFAPVPDVRKTVTPDLKHDKGDSHLLLVDL 847 (1310)
T ss_pred HHHHHHHHHHHHHHcCCCccccccccccccccccCCCcCccccCCCcEEEEEEEecCHhhccChhhccCCCCceEEEEEc
Confidence 7799999999999999999999997641 1 4567789999975 678888888885 53 442
Q ss_pred ec---ccChHHHHHHHHhhcCchhhhhhcccCCHH-HHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHH
Q psy4307 230 TK---PLGTQVAVNAHQWLDQPERWNRIKLIVSED-DVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHA 305 (412)
Q Consensus 230 tg---~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~-~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L 305 (412)
++ .+|.+.....+ .. +...++.. +++.... .+ .....++++..++||||+|+|||+++|
T Consensus 848 g~~~~~LGGS~laq~~---~~------~g~~~P~vd~~~~lk~-~f-------~~i~~li~~glV~A~HDvSdGGL~~aL 910 (1310)
T TIGR01735 848 GPGKNRLGGSALAQVF---GQ------LGGDCPDLDDPERLKA-FF-------AVMQGLVAEGLLLAYHDRSDGGLVTTL 910 (1310)
T ss_pred cCCcccchHHHHHHHh---cc------ccCCCCCCCcHHHHHH-HH-------HHHHHHHHcCCeEEEeeCCcChHHHHH
Confidence 33 24544432211 11 11223321 1221111 11 112344556679999999999999999
Q ss_pred HhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEE
Q psy4307 306 QTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 385 (412)
Q Consensus 306 ~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~ 385 (412)
+|||.++++|++|+++++|..+.. .+| + |+. |+|++|++++.+++++.++++ |+++.+||.++
T Consensus 911 aEMAfag~~G~~Idl~~i~~~~~~----~LF-------s----Es~-G~VieV~~e~~~~v~~~l~~~-Gi~~~viGig~ 973 (1310)
T TIGR01735 911 LEMAFAGHCGLDVDLDALGDSLFA----VLF-------N----EEL-GAVIQVAKPDLAAVLELLRAA-GLTALILGIGT 973 (1310)
T ss_pred HHHHHhCCCcEEEEeCCCCCcHHH----HHh-------C----CCC-cEEEEEehHHHHHHHHHHHhC-CCceEEEEEEE
Confidence 999999999999999998764422 222 1 333 499999999999999999997 99999999766
Q ss_pred eC-CceEEEEcCCeE
Q psy4307 386 KG-NRTARIIDKPRV 399 (412)
Q Consensus 386 ~~-~~~v~i~~~g~~ 399 (412)
.. +..+.|..+++.
T Consensus 974 ~~~~~~i~I~~~g~~ 988 (1310)
T TIGR01735 974 PTGHPMIRISVNGAT 988 (1310)
T ss_pred ECCCCEEEEEeCCEE
Confidence 43 345666556554
No 41
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.90 E-value=6.7e-22 Score=223.74 Aligned_cols=266 Identities=15% Similarity=0.106 Sum_probs=187.2
Q ss_pred CCCeeEEecC-CCCceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchH--HHHhhhhcCCCCChhhHhhHHH
Q psy4307 97 GMDSAVIPLR-HGGLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECD--NLLMLVAVSTKMTEKERDVVIP 172 (412)
Q Consensus 97 GdDaavi~~~-~~~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~--~~l~~l~lp~~~~~~e~~~~l~ 172 (412)
+.||+|+++. +....++++++..++ ...|||.+|+.||+.++++|+|+|+.+.. +++..+.+|.+.+. .++.|.
T Consensus 672 ~~DaaV~~~~~~~~~g~ama~G~~P~~~~~dP~~ga~~AV~EA~~Nlvaag~~~~~~i~ls~N~~~~~~~p~--~~a~L~ 749 (1290)
T PRK05297 672 VADCAVTAASYDGYAGEAMAMGERTPVALLDAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPG--EDARLY 749 (1290)
T ss_pred CCCeEEEEecCCCCeEEEEEEcCCCCeeccCHHHHHHHHHHHHHhhheecCCccccceEEEEEEeccCCCCc--hHHHHH
Confidence 6899999983 224578999998755 46899999999999999999999986632 22223334544432 237899
Q ss_pred HHHHHHH-HHHHHcCCeEEccccccc-----------Cc----eeEeEEEEEEecC-CccccCCCC-CCCCEEEEe--c-
Q psy4307 173 LMLRGFK-DSALEAGTAVTGGQTVVN-----------PW----CTIGGVATTVCQP-NEYIVPDNA-VVGDVLVLT--K- 231 (412)
Q Consensus 173 ~i~~Gi~-~a~~~~gv~ivGG~T~~~-----------~~----~~i~~t~iG~~~~-~~~~~~~~a-~~GD~Iilt--g- 231 (412)
+.++++. ++|+++|++++||+.+.+ .. |++.++++|.+++ .+.+++... .+|+.|++. +
T Consensus 750 ~av~a~~~e~c~~LgipiigGkdSmS~~t~yne~~~~~~v~iPpTlvisa~g~v~dv~~~vTp~lkk~~g~~l~lI~lg~ 829 (1290)
T PRK05297 750 DAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSPLSLIISAFAPVEDVRKTLTPQLRTDKDTALLLIDLGR 829 (1290)
T ss_pred HHHHHHHHHHHHHcCCCccccchhcCCccccccCCCCCcceeCCccEEEEEEEecCcccccCcccccCCCCEEEEEECCC
Confidence 9999999 999999999999995441 11 4666789999977 678888875 678888876 2
Q ss_pred ---ccChHHHHHHHHhhcCchhhhhhcccCCH-HHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHh
Q psy4307 232 ---PLGTQVAVNAHQWLDQPERWNRIKLIVSE-DDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQT 307 (412)
Q Consensus 232 ---~lG~~~~~~a~~~l~~~~~~~~l~~~l~~-~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~e 307 (412)
.+|.+.....+ . .+...++. .+++.... .+ .....++++..++||||+|+|||+++|+|
T Consensus 830 ~~~~lGGS~laq~~---~------~~g~~~P~v~d~~~lk~-~~-------~~v~~li~~glv~S~HDvSdGGL~~aLaE 892 (1290)
T PRK05297 830 GKNRLGGSALAQVY---N------QLGDKAPDVDDAEDLKG-FF-------NAIQALVAEGLLLAYHDRSDGGLLTTLAE 892 (1290)
T ss_pred CcccchHhHHHHHh---h------hhcCCCCCCCCHHHHHH-HH-------HHHHHHHHcCCEEEEEeCCcCHHHHHHHH
Confidence 23444432111 1 11122332 12222111 11 11234456667999999999999999999
Q ss_pred HHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCC--ceeEEEEEE
Q psy4307 308 LAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGY--QAWIIGIVE 385 (412)
Q Consensus 308 ma~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~--~a~vIG~V~ 385 (412)
||.++++|++|+++++|..+ .+.+|+ |+. |+|++|++++.+++++.+++. |+ ++.+||+|+
T Consensus 893 MAfa~~~G~~Idl~~i~~~~----~~~LFs-----------E~~-G~vveV~~~~~~~v~~~l~~~-gi~~~~~~IG~vt 955 (1290)
T PRK05297 893 MAFAGHCGLDIDLDALGDDA----LAALFN-----------EEL-GAVIQVRAADRDAVEAILAEH-GLSDCVHVIGKPN 955 (1290)
T ss_pred HHhhCCCcEEEEeCCCCchH----HHHHhC-----------CCc-eEEEEEehHHHHHHHHHHHHc-CCCCCCeEEEEEC
Confidence 99999999999999987322 222332 233 478999999999999999987 88 899999998
Q ss_pred eCCceEEEEcCCeE
Q psy4307 386 KGNRTARIIDKPRV 399 (412)
Q Consensus 386 ~~~~~v~i~~~g~~ 399 (412)
+++ .+.|..+++.
T Consensus 956 ~~~-~l~I~~~~~~ 968 (1290)
T PRK05297 956 AGD-RIVITRNGKT 968 (1290)
T ss_pred CCc-eEEEEeCCee
Confidence 653 4666555543
No 42
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.87 E-value=1.6e-20 Score=210.77 Aligned_cols=265 Identities=19% Similarity=0.145 Sum_probs=186.0
Q ss_pred CCCCCCCCeeEEecCCC-CceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCC-----CCCh
Q psy4307 92 PRIGIGMDSAVIPLRHG-GLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVST-----KMTE 164 (412)
Q Consensus 92 ~~~~~GdDaavi~~~~~-~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~-----~~~~ 164 (412)
|-..++.||+|+..... ...+++|+|..++ ...|||..|+.||+.++++|++++ |. .+.+++++.. +.+.
T Consensus 679 p~q~p~aD~aV~~~~~~~~~g~a~s~G~~p~~~~~dp~~ga~~AV~Ea~~Nlvaa~--~~-~l~di~~s~nw~~~~~~p~ 755 (1307)
T PLN03206 679 PLQIPLADVAVIAQTHTGLTGGACAIGEQPIKGLVDPKAMARLAVGEALTNLVWAK--VT-ALSDVKASGNWMYAAKLDG 755 (1307)
T ss_pred CccCCCcceeEEEEeCCCCeEEEEEecCCCceeeeCHHHHHHHHHHHHHhHhhccC--CC-cHHHeEEEcChhHhhcCCC
Confidence 33456789999987532 2468999999866 478999999999999999999954 43 2333332222 2222
Q ss_pred hhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc-----------eeEeEEEEEEecC-CccccCCCCCCCCEEEE---
Q psy4307 165 KERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW-----------CTIGGVATTVCQP-NEYIVPDNAVVGDVLVL--- 229 (412)
Q Consensus 165 ~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~-----------~~i~~t~iG~~~~-~~~~~~~~a~~GD~Iil--- 229 (412)
+ . +.+.+.++|+.++|.++|++++||..+.+.+ +++.++++|.++. .+.+++...++||.+++
T Consensus 756 ~-~-~~l~~av~g~~~~~~~Lgipii~GKdSls~~~~~~~~~~~~P~TLvIs~~~~v~Dv~~~vtp~lK~~G~~vlL~id 833 (1307)
T PLN03206 756 E-G-ADMYDAAVALRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAPGNLVISAYVTCPDITKTVTPDLKLGDDGVLLHVD 833 (1307)
T ss_pred C-H-HHHHHHHHHHHHHHHHcCCCcccCeecCCCCCCCCCCCcCCCCCEEEEEEEEcCCcccCcChhhcCCCCEEEEEEe
Confidence 1 1 4678899999999999999999999877642 3556778888876 67788877778998888
Q ss_pred ecc----cChHHHHHHHHhhcCchhhhhhcccCC----HHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChH
Q psy4307 230 TKP----LGTQVAVNAHQWLDQPERWNRIKLIVS----EDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGL 301 (412)
Q Consensus 230 tg~----lG~~~~~~a~~~l~~~~~~~~l~~~l~----~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL 301 (412)
.|. +|.+.....+ .. +....+ .+.+++ +.....+++++..++|+||+|+|||
T Consensus 834 lG~~~~~LGGS~~~q~~---~~------~g~~~Pdv~d~~~lK~-----------~f~av~~Li~~glV~A~HDvSdGGL 893 (1307)
T PLN03206 834 LGKGKRRLGGSALAQAY---DQ------IGDDCPDLDDVAYLKK-----------AFEATQDLIAKRLISAGHDISDGGL 893 (1307)
T ss_pred cCCCCcCccccHHHHHh---Cc------cCCCCCCCCCHHHHHH-----------HHHHHHHHHHCCCeeEEEeCCcCHH
Confidence 443 4554432111 11 111122 122111 1112245566778999999999999
Q ss_pred HHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEE
Q psy4307 302 LGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWII 381 (412)
Q Consensus 302 ~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vI 381 (412)
+.+|+|||.++++|++|+++..+.. .++.+| + | ++|+|+.|++++.+++++.++++ |+++.+|
T Consensus 894 ~~ALaEMAfag~~G~~Idl~~~~~~----~~~~LF-------s----E-s~G~VieV~~e~~~~v~~~l~~~-gi~~~vI 956 (1307)
T PLN03206 894 VVTLLEMAFAGNCGINVDLPSSGHS----AFETLF-------A----E-ELGLVLEVSRKNLDAVMEKLAAA-GVTAEVI 956 (1307)
T ss_pred HHHHHHHHhhcCCcEEEEeCCccch----HHHHHh-------C----C-CccEEEEEehhHHHHHHHHHHHC-CCCeEEE
Confidence 9999999999999999998764422 222222 2 3 33599999999999999999997 9999999
Q ss_pred EEEEeCCceEEEEcCCeE
Q psy4307 382 GIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 382 G~V~~~~~~v~i~~~g~~ 399 (412)
|+|++++ .++|..+++.
T Consensus 957 G~vt~~~-~i~I~~~g~~ 973 (1307)
T PLN03206 957 GQVTASP-LIEVKVDGAT 973 (1307)
T ss_pred EEECCCC-eEEEEECCEE
Confidence 9998653 4666666653
No 43
>KOG0237|consensus
Probab=99.87 E-value=1.5e-21 Score=197.00 Aligned_cols=278 Identities=18% Similarity=0.212 Sum_probs=200.8
Q ss_pred CCCCCCeeEEecCC---CCceeEEEecCCCC------CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCCh
Q psy4307 94 IGIGMDSAVIPLRH---GGLSLVQTTDFFYP------LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTE 164 (412)
Q Consensus 94 ~~~GdDaavi~~~~---~~~~lv~ttD~~~p------~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~ 164 (412)
.++|--.+++++.. .+..||..||+.-. .......+|...|+.|+|||.+.||+|+ ++|+++.-. .++.
T Consensus 470 ~diGGFgglfdLk~ag~~d~~Lv~~tdGVGtKl~iA~~~~~hdtvG~DlvAm~vNDii~~gAePl-~FLDYfa~g-kLd~ 547 (788)
T KOG0237|consen 470 ADIGGFGGLFDLKQAGFKDPLLVSGTDGVGTKLKIAQETNIHDTVGIDLVAMNVNDIIVQGAEPL-FFLDYFATG-KLDV 547 (788)
T ss_pred ccccccceeeehhhcCCCCceEEEeccCccceeehhhhhCcccccceeeeeeehhhHhhcCCcce-eehhhhhhc-ccch
Confidence 35788888997643 24578999998421 1234457899999999999999999999 699988654 3444
Q ss_pred hhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCce------eEeEEEEEEecCCccccC-CCCCCCCEEEEecccChHH
Q psy4307 165 KERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWC------TIGGVATTVCQPNEYIVP-DNAVVGDVLVLTKPLGTQV 237 (412)
Q Consensus 165 ~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~------~i~~t~iG~~~~~~~~~~-~~a~~GD~Iiltg~lG~~~ 237 (412)
...+++++||.+.|++++|.++||.|.+.|.. -++++++|.+++..+++. +..++||+|+-.-+-|.|.
T Consensus 548 ----~va~~~v~gia~gC~qa~CaLvGGETaEMP~~Y~~g~yDlaG~Avga~e~~~iLp~~~ei~~GDVllGL~SsGvHS 623 (788)
T KOG0237|consen 548 ----SVAEQVVKGIAEGCRQAGCALVGGETAEMPGMYAPGEYDLAGFAVGAVERTDILPKLNEIVAGDVLLGLPSSGVHS 623 (788)
T ss_pred ----HHHHHHHHHHHHHHhhccceeeccccccCCCCCCCCccccccceEeeeeccCcCCCccccccCcEEEecccccccc
Confidence 57788999999999999999999999998862 577899999998666655 4499999999887777663
Q ss_pred H--HHHHHhhcCc-hhhhhhcccCCHH---HHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHh
Q psy4307 238 A--VNAHQWLDQP-ERWNRIKLIVSED---DVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKH 311 (412)
Q Consensus 238 ~--~~a~~~l~~~-~~~~~l~~~l~~~---~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~ 311 (412)
. +...+.+... -.| +..++-+ .+- +..+.+...+.+....++++.+++++.+||+|||...+-++..
T Consensus 624 NGfSLvrkil~~~~l~~---~~~~P~~~~~tlG---d~LL~pTkiYvk~ll~~i~~g~vkg~AHITGGGl~ENipRvlp- 696 (788)
T KOG0237|consen 624 NGFSLVRKILARSGLSY---KDPLPWDSSKTLG---DELLAPTKIYVKQLLPLIRKGGVKGLAHITGGGLTENIPRVLP- 696 (788)
T ss_pred CcHHHHHHHHHhcCCcc---CCCCCCCcccchh---hhhccccEEehhhhHHHHHhcccceeeeecCCCccccchhhcc-
Confidence 2 2222322210 011 0111111 111 1133343334445567788889999999999999999999876
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccc-eEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCC
Q psy4307 312 QKNEVSFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSG-GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN 388 (412)
Q Consensus 312 s~~g~~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsG-glLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~ 388 (412)
+++++.||.+.+-+++-...+....+.+ -.|...| ++| ||+++|+|++++++++.|+++ +..+|+||+|.++.
T Consensus 697 ~~l~~~id~~twe~p~vF~Wl~~aG~v~~~em~RTf---N~GiGmVlvVs~e~ve~v~kel~~~-~e~~~~iG~vv~r~ 771 (788)
T KOG0237|consen 697 DHLGAVIDADTWELPPVFKWLQQAGNVPDSEMARTF---NCGIGMVLVVSPENVERVLKELTNH-GEEAYRIGEVVNRE 771 (788)
T ss_pred cccceEEecccccCcHHHHHHHHcCCCCHHHHHHHh---ccccceEEEEcHHHHHHHHHHHhhC-CeEEEEEEeEeecC
Confidence 8999999999987765433333333332 3343334 244 799999999999999999997 88999999998754
No 44
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=99.83 E-value=2.5e-21 Score=158.26 Aligned_cols=92 Identities=33% Similarity=0.435 Sum_probs=82.5
Q ss_pred CCCeeEEecCCCCceeEEEecCCCCC----CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHH
Q psy4307 97 GMDSAVIPLRHGGLSLVQTTDFFYPL----VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIP 172 (412)
Q Consensus 97 GdDaavi~~~~~~~~lv~ttD~~~p~----~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~ 172 (412)
||||||++++. +..+++++|.+.+. ..+||.+||+++++++|||++|||+|+ ++++++.+|+..++ ++++
T Consensus 1 GdDaavi~~~~-~~~~~~~~d~~~~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~-~~~~~l~~~~~~~~----~~l~ 74 (96)
T PF00586_consen 1 GDDAAVIRIPD-GKRLVVSTDGFGTSVHFAFMDPYDGGWKAVAEALSDLAAMGAKPL-AILDSLGLPNPESP----EELK 74 (96)
T ss_dssp TSSSEEEEETS-TEEEEEEEEEEETHHHHHTCTHHHHHHHHHHHHHHHHHTTTEEEE-EEEEEEEESTTSBH----HHHH
T ss_pred CCceEEEEcCC-CCeEEEEEEeccCcccccccCHHHHHHHHHHHHHHHHHhcCCeee-EEEEEEEcCCCCCH----HHHH
Confidence 79999999985 67899999997543 349999999999999999999999999 68889999887776 6899
Q ss_pred HHHHHHHHHHHHcCCeEEcccc
Q psy4307 173 LMLRGFKDSALEAGTAVTGGQT 194 (412)
Q Consensus 173 ~i~~Gi~~a~~~~gv~ivGG~T 194 (412)
++++|+.++|+++|++++||||
T Consensus 75 ~~~~Gi~~~~~~~g~~ivGG~T 96 (96)
T PF00586_consen 75 EIVKGIAEACREFGIPIVGGDT 96 (96)
T ss_dssp HHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHHHHhCCcEeCcCC
Confidence 9999999999999999999998
No 45
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=99.79 E-value=2.4e-18 Score=151.79 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=99.9
Q ss_pred CCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHh-hcCceEEecCCCCh
Q psy4307 222 VVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMH-KYNAHGATDVTGFG 300 (412)
Q Consensus 222 ~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~-~~~i~a~~DiT~GG 300 (412)
||||.|++||++|.++........ . .... ..+.+ ..... .... .......+.. +..+|||||+|+||
T Consensus 1 k~GD~i~~~g~~G~~~~~~~~~~~-~-~~~~----~~~~~-~~~~~--~~~~---~~~~~~~~~~~~~~i~a~~DvSdGG 68 (153)
T PF02769_consen 1 KPGDLIIVTGSLGLGGSGLLAARK-G-GESG----GLPDP-LVDAE--LEPP---LLYAVRALAALKGLIHAAHDVSDGG 68 (153)
T ss_dssp STTEEEEEECSSSHCHHHHHHHHH-T-HHHT----THHHC-HHHHH--HHHH---HHHHHHHHHHHHTTEEEEEEESTTH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHh-C-cccc----ccchh-hhhHH--hhHH---HHHHHHHhhhhhcceEEEEecCCch
Confidence 699999999999988775322111 0 1100 01000 00000 0011 1111122223 36799999999999
Q ss_pred HHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCC-cee
Q psy4307 301 LLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGY-QAW 379 (412)
Q Consensus 301 L~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~-~a~ 379 (412)
|+++|+|||.+|++|++|+.+++|+.+.+....+. ++ .+++|.+++++++++++++++.++++ |+ .++
T Consensus 69 L~~~l~em~~~s~~g~~i~~~~~p~~~~~~~~~~~------l~----~~~~g~~l~~v~~~~~~~~~~~~~~~-g~~~~~ 137 (153)
T PF02769_consen 69 LAGALAEMAEASGVGAEIDLDKIPLSDELQSPLEM------LF----SESEGRLLVAVPPEDAEEFLAALKKA-GIPNAT 137 (153)
T ss_dssp HHHHHHHHHHCTTEEEEEEGGGSHHHHHHHHHHHH------HH----HSSSTEEEEEEEGGGHHHHHHHHHHT-TCTTEE
T ss_pred HHHHHHHHHHhCCcceEEccccchhhhhhhhhhhh------hc----cCCCCCEEEEEcHHHHHHHHHHHHhC-CCCCEE
Confidence 99999999999999999999999988876421111 11 35788999999999999999999997 89 599
Q ss_pred EEEEEEeCCc
Q psy4307 380 IIGIVEKGNR 389 (412)
Q Consensus 380 vIG~V~~~~~ 389 (412)
+||+|+++++
T Consensus 138 ~IG~V~~~~~ 147 (153)
T PF02769_consen 138 VIGEVTEGPG 147 (153)
T ss_dssp EEEEEESSSS
T ss_pred EEEEEEcCCC
Confidence 9999998764
No 46
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.78 E-value=1.1e-18 Score=194.78 Aligned_cols=258 Identities=11% Similarity=0.081 Sum_probs=185.0
Q ss_pred CceeEEEecCC-CCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcC----CCCC-----hhh--HhhHHHHHHH
Q psy4307 109 GLSLVQTTDFF-YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVS----TKMT-----EKE--RDVVIPLMLR 176 (412)
Q Consensus 109 ~~~lv~ttD~~-~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp----~~~~-----~~e--~~~~l~~i~~ 176 (412)
+..++++..+| +|...+||..+...+-..++|+.+||+... ..|.+| +..+ +.. .++.+.+...
T Consensus 311 ~~~v~fK~ETHNHPSaIePf~GAATGvGG~IRD~lsg~a~~~----~~Lr~~g~g~p~~~~~~~~~gklp~r~I~~gv~~ 386 (1239)
T TIGR01857 311 PWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLSGRSYVY----QAMRVTGAGDPTVPISETLKGKLPQRKITTTAAH 386 (1239)
T ss_pred ceEEEEEEccCCCCCccCCCCcccccCCchhccccccceeee----cccccCCCCCCCccccccccCCCchhhhhhhccc
Confidence 66789999997 799999999999999999999999998743 334442 1110 001 3478999999
Q ss_pred HHHHHHHHcCCeEEcccccccCc----eeEeEEEEEEecCCccccCCCCCCCCEEEEecc----cChHHHHHHHHhhcCc
Q psy4307 177 GFKDSALEAGTAVTGGQTVVNPW----CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKP----LGTQVAVNAHQWLDQP 248 (412)
Q Consensus 177 Gi~~a~~~~gv~ivGG~T~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~----lG~~~~~~a~~~l~~~ 248 (412)
|+.++-++.|++-++|.+.+.+. +.+.+.++|.++++++.+ ...++||.|++.|. .|.+++..+.+.+...
T Consensus 387 G~s~YGN~~GvpTg~g~~~f~~~Y~~~~lv~~~~vG~~~~~~v~k-~~~~~Gd~iv~~Gg~tGRdGigGat~SS~~~~~~ 465 (1239)
T TIGR01857 387 GYSSYGNQIGLATGQVSEIYHPGYVAKRMEVGAVVAATPKENVVR-EKPEPGDVIILLGGKTGRDGIGGATGSSKEHTVE 465 (1239)
T ss_pred ceeccCcccCCceeeEEEEEecCCCCCceEEEEEEEeecHHHhcc-CCCCCCCEEEEECCCCCcCcccchhhhhhhcccc
Confidence 99999999999999999988765 677777899998776554 44899999999654 5677665455433221
Q ss_pred hhhhhhcc-cC--CHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCC
Q psy4307 249 ERWNRIKL-IV--SEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPV 325 (412)
Q Consensus 249 ~~~~~l~~-~l--~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv 325 (412)
. ..... .+ .....++ ++.+.....+.+..+.+|||++.|||+.++.|||. |++|+++++|.
T Consensus 466 s--~~~~~~aVQ~Gdp~~Ek----------kl~e~i~~a~~~glI~s~hD~gaGGLavAlaEma~----G~~IdL~~vp~ 529 (1239)
T TIGR01857 466 S--LELCGAEVQKGNAPEER----------KIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD----GLEIDLNKVPK 529 (1239)
T ss_pred c--cccccCccCcCCHHHHH----------HHHHHHHHHHhCCCEEEEeecchhHHHHHHHHHhC----CEEEEcCCCcc
Confidence 0 00000 01 1111111 12222223444567999999999999999999996 89999999997
Q ss_pred hHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE
Q psy4307 326 IAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~ 399 (412)
......-. ..|+ .|++++++++|++++.++|.+.+++. ++++++||+|++. +++++.++|+.
T Consensus 530 ~~~gl~p~------EiLf----SESQeRmlv~V~pe~~e~f~~i~~~~-~l~~~vIG~vt~~-~~l~v~~~g~~ 591 (1239)
T TIGR01857 530 KYEGLNGT------ELAI----SESQERMAVVVSPEDVDAFLAYCNEE-NLEATVVATVTEK-PRLVMNWNGKT 591 (1239)
T ss_pred ccCCCCHH------HHhh----CCcCCeEEEEEChhhHHHHHHHHHHC-CCCEEEEEEECCC-CeEEEEeCCce
Confidence 54211000 1122 57899999999999999999999987 8999999999864 45777766654
No 47
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.78 E-value=5.3e-19 Score=198.59 Aligned_cols=264 Identities=12% Similarity=0.098 Sum_probs=192.6
Q ss_pred CceeEEEecCC-CCCCCChhHHHHHHHHHHHhHhhhc--CccchHHHHhhhhcCC-CCC-----hh-----------hHh
Q psy4307 109 GLSLVQTTDFF-YPLVDDPYMMGKIACSNVLSDLYAM--GVTECDNLLMLVAVST-KMT-----EK-----------ERD 168 (412)
Q Consensus 109 ~~~lv~ttD~~-~p~~~dp~~~G~~av~~~vsDIaam--Ga~P~~~~l~~l~lp~-~~~-----~~-----------e~~ 168 (412)
+..++++..+| +|...+||..+...+-..++|+.+| ||+|+ +.++.+.+.. ..+ .+ ...
T Consensus 285 ~~~i~fK~ETHNHPTaIePf~GAATGvGG~IRD~~a~GrGa~Pi-A~l~~~~~g~l~~~g~~~p~e~~~~~~p~~l~~~~ 363 (1307)
T PLN03206 285 DLDILLTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVV-AGTAGYCVGNLRIEGSYAPWEDSSFVYPSNLASPL 363 (1307)
T ss_pred ceEEEEEeccCCCCCccCCCCcccccCCceeecccccCCCceee-ecceeEEecCCCCCCCcCccccccccCcccCCCHh
Confidence 56789999997 7999999999999999999999999 99999 6888887752 111 00 134
Q ss_pred hHHHHHHHHHHHHHHHcCCeEEccccc-ccC-----------ceeEeEEEEEEecCCccccCCCCCCCCEEEEec----c
Q psy4307 169 VVIPLMLRGFKDSALEAGTAVTGGQTV-VNP-----------WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTK----P 232 (412)
Q Consensus 169 ~~l~~i~~Gi~~a~~~~gv~ivGG~T~-~~~-----------~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg----~ 232 (412)
+++.+...|+.++-++.|+|.++|.+. +.+ .|++...++|.++++++.+ ...++||.|++.| -
T Consensus 364 ~I~~~~~~G~s~YGN~~G~P~v~G~~~~F~~~~~~g~~~~~~kPim~ag~vG~~~~~~v~k-~~~~~G~~vv~lGG~tgR 442 (1307)
T PLN03206 364 QILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPNGERREWLKPIMFSGGIGQIDHTHLTK-GEPDIGMLVVKIGGPAYR 442 (1307)
T ss_pred HHhhccCCccccCCcccCCcccCcEEEEeccccccccccccCCCceEEEEEEEEcHHHccc-CCCCCCCEEEEECCCccc
Confidence 788899999999999999999999974 211 3566777999998776654 4499999999965 3
Q ss_pred cChHHHHHHHHhhcCch---hhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHH
Q psy4307 233 LGTQVAVNAHQWLDQPE---RWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLA 309 (412)
Q Consensus 233 lG~~~~~~a~~~l~~~~---~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema 309 (412)
.|.++++.+.+.+.... ..... +....+.++-.++ +-+...++.....|.+|||...|||..++.||+
T Consensus 443 dGigGat~SS~~~~~~s~~~d~~aV--Q~GnP~~Ekklq~-------vi~ac~e~~~~~~I~~i~D~GAGGls~a~~Ela 513 (1307)
T PLN03206 443 IGMGGGAASSMVSGQNDAELDFNAV--QRGDAEMSQKLYR-------VVRACVEMGEDNPIVSIHDQGAGGNCNVVKEII 513 (1307)
T ss_pred ccccchhhhhhhhCCccccccCCcc--ccCCHHHHHHHHH-------HHHHHHHhhcCCCEEEEEecCCchHHHhHHHHh
Confidence 57776655554333110 00000 1112222221111 222223344455699999999999999999999
Q ss_pred HhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCc
Q psy4307 310 KHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNR 389 (412)
Q Consensus 310 ~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~ 389 (412)
.. .|++|+++++|+...-.. .++++ -.|++-+|+++|+|++.++|.+.+++. +.++++||+|++..
T Consensus 514 ~~--~G~~i~Ld~Vp~~e~gms-------p~EI~---~SESQERm~l~V~p~~~~~f~~i~~re-~~~~~vVG~vT~~~- 579 (1307)
T PLN03206 514 YP--KGAEIDIRAVVVGDHTLS-------VLEIW---GAEYQEQDALLIKPESRDLLQSICDRE-RCSMAVIGTIDGSG- 579 (1307)
T ss_pred hc--CceEEEhhhCcCCCCCCC-------HHHHH---HhHHhhhheeeECcccHHHHHHHHHHc-CCCeEEEEEEecCC-
Confidence 86 799999999998764211 12222 256788999999999999999999996 99999999999864
Q ss_pred eEEEEcCC
Q psy4307 390 TARIIDKP 397 (412)
Q Consensus 390 ~v~i~~~g 397 (412)
++++.+++
T Consensus 580 rl~v~~~~ 587 (1307)
T PLN03206 580 RVVLVDSA 587 (1307)
T ss_pred eEEEEECC
Confidence 57777664
No 48
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.76 E-value=5.4e-17 Score=181.32 Aligned_cols=227 Identities=16% Similarity=0.136 Sum_probs=168.1
Q ss_pred CCeeEEecC----CCCceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCC---CCCh-hhHh
Q psy4307 98 MDSAVIPLR----HGGLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVST---KMTE-KERD 168 (412)
Q Consensus 98 dDaavi~~~----~~~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~---~~~~-~e~~ 168 (412)
.||+|++++ +....+++|+|..++ ...|||.+++.||..++++|+|+|+.|. .+ .|+|.+ ++++ .+..
T Consensus 677 ~DaaV~~~~~~~g~t~~g~ams~g~nP~~~~~dPy~ga~~AV~EA~rNlva~G~~~~-~i--~Lnf~~~F~k~p~~p~~w 753 (1239)
T TIGR01857 677 TEASVAKLPVLGGETHTASAIAWGFNPYIAEWSPYHGAAYAVIESLAKLVAAGADYK-KA--RLSFQEYFEKLDKDAERW 753 (1239)
T ss_pred cceEEEEeeccCCCCCeEEEEEecCCCceeccCHHHHHHHHHHHHHhhhheeCCcHH-HE--EEecccccccCCCChhHH
Confidence 699999975 224579999999865 4789999999999999999999999997 33 565543 1111 1344
Q ss_pred hHHHHHHHHHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHH
Q psy4307 169 VVIPLMLRGFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNA 241 (412)
Q Consensus 169 ~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a 241 (412)
+++.+-+.|+.++|.++|+|++||..+.+++ |++.++++|..+-.+.+++...++||.|++.+.....
T Consensus 754 ~~~~~al~ga~~a~~~lgipvigGKdSmsn~~~~v~iPPTlvi~avgv~Dv~~~vt~~~K~~G~~i~lig~~~~~----- 828 (1239)
T TIGR01857 754 GKPFAALLGAIKAQIDLGLPAIGGKDSMSGTFEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQALE----- 828 (1239)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcceecCccccCCeeeCCccEEEEEeccCHhhccChhhccCCCEEEEEcCCccc-----
Confidence 6778889999999999999999999887753 5666678887755778888777889999999743111
Q ss_pred HHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEcc
Q psy4307 242 HQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH 321 (412)
Q Consensus 242 ~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~ 321 (412)
. + .+..+.+++.+ .....++++..+.|+||+|+|||+.+|.|||-++++|++|+++
T Consensus 829 -----~-g-------~~d~~~~k~~~-----------~~v~~li~~g~v~s~hDvS~GGL~vaLaEMaf~g~~G~~i~l~ 884 (1239)
T TIGR01857 829 -----D-G-------TIDFDLLKENF-----------AQIEELIADHKVVSASAVKYGGVAESLAKMTFGNRIGAELNNP 884 (1239)
T ss_pred -----C-C-------CCCHHHHHHHH-----------HHHHHHHHCCCEEEEEeCCcChHHHHHHHHHhcCCceEEEecC
Confidence 0 0 12222221111 1224556677899999999999999999999999999999986
Q ss_pred CCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeC
Q psy4307 322 NLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKG 387 (412)
Q Consensus 322 ~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~ 387 (412)
.+ + .|| .|+.|++|+.++++. . ++++.+||+|+++
T Consensus 885 ~~-------~---------~LF----sE~~gr~vvev~~~~----------~-~~~~~~IG~v~~~ 919 (1239)
T TIGR01857 885 EL-------E---------DLF----TAQYGSFIFESPEEL----------S-IANVEKIGQTTAD 919 (1239)
T ss_pred cH-------H---------Hhh----CCCCceEEEEEChhh----------c-CCcceEEEEECCc
Confidence 41 1 122 356888999998862 1 5778999999753
No 49
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.61 E-value=8.7e-15 Score=154.18 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=133.5
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCC-CCChhhHhhHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVST-KMTEKERDVVI 171 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~-~~~~~e~~~~l 171 (412)
+.+|.|++|+++.. ...+++++|+++. ...|||.++..||..++++++|+||+|. ++.++++|+. +.+ . ..+
T Consensus 381 ~~P~~~a~v~~~~~-~~~~a~~~~~np~~~~~~p~~g~~~av~ea~rn~~~~Ga~p~-~i~~~~nf~~p~~~---~-~~~ 454 (601)
T PRK14090 381 LPPGFGAAVMRIKR-DGGYSLVTHSRADLALQDTYWGTFIAVLESVRKTLSVGAEPL-AITNCVNYGDPDVD---P-VGL 454 (601)
T ss_pred ccCCCCcEEEEEcC-CCeEEEEcCCCCceeccCHHHHHHHHHHHHHhhHhhhCCcHH-HceechhcCCCCCC---H-HHH
Confidence 46677899999975 3479999999743 5789999999999999999999999998 6888999973 223 2 379
Q ss_pred HHHHHHHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHh
Q psy4307 172 PLMLRGFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQW 244 (412)
Q Consensus 172 ~~i~~Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~ 244 (412)
.+.++|+.++|+.+++|++||+.+.+++ |+..+.++|.++.++.+++ +.|| |++.|....
T Consensus 455 ~~~~~~~~~a~~~~~~p~i~G~~S~~n~~~~~~i~PT~~~~~vg~~~~~~~~~~---~~~~-i~lig~~~~--------- 521 (601)
T PRK14090 455 SAMMTALKDACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAKP---KPSK-VFAVGWNDF--------- 521 (601)
T ss_pred HHHHHHHHHHHHHhCCCeecceeccccCCCCccCCCCceEEEEEEeccccccCC---CCCe-EEEECCCCC---------
Confidence 9999999999999999999999998864 6677779999987666665 5788 888886211
Q ss_pred hcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhc-CceEEecCCCChHHHHHHhHHHhCCCeEEEEccCC
Q psy4307 245 LDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKY-NAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNL 323 (412)
Q Consensus 245 l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~-~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~i 323 (412)
..+...+ ......+++++. .++++||+|+ |+ .++. -.+.|+.|.++++
T Consensus 522 --------------~~~~~~~-----------~~~~~~~~i~~~~~~~~~hd~s~-g~----~~~~-~~~~~~~~~~~~~ 570 (601)
T PRK14090 522 --------------ELEREKE-----------LWREIRKLSEEGAFILSSSQLLT-RT----HVET-FREYGLKIKLKLL 570 (601)
T ss_pred --------------CHHHHHH-----------HHHHHHHHHhCCCeEEEEEEccc-Cc----hhhh-hccccccccchhh
Confidence 0010000 111123445555 6899999999 76 3332 2356777777766
No 50
>KOG1907|consensus
Probab=99.04 E-value=7.4e-08 Score=102.49 Aligned_cols=246 Identities=16% Similarity=0.180 Sum_probs=150.5
Q ss_pred CCChhHHHHHHHHHHHhHhhhcCccchHHHHhh--hhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc-
Q psy4307 123 VDDPYMMGKIACSNVLSDLYAMGVTECDNLLML--VAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW- 199 (412)
Q Consensus 123 ~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~--l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~- 199 (412)
-.||...++.+|+.++.+|.+.-.+-+.-.-.+ ..++...+-+ = ..+-+.++.+.....++||.|=||.-+.+-.
T Consensus 723 Lida~a~ARm~VaE~l~NLv~a~i~sL~dvK~SgNWM~aak~~GE-G-arlydAv~aL~~~L~eLgiAIdgGKDSlSMa~ 800 (1320)
T KOG1907|consen 723 LIDAAASARMCVAEALMNLVAAKITSLKDVKLSGNWMWAAKHPGE-G-ARLYDAVQALCLGLCELGIAIDGGKDSLSMAM 800 (1320)
T ss_pred hhCHHHHhHHHHHHHHHHhHhhcccchhheeeccceeecccCCCc-c-hHHHHHHHHHHHHHHHhceeecCCccchhhhe
Confidence 468999999999999999998766544211001 1122222211 0 3455567777777789999999997654311
Q ss_pred ----------eeEeEEEEEEecC-CccccCCCC--CCCCEEEEe--------cccChHHHHHHHHhhcCchhhhhhcccC
Q psy4307 200 ----------CTIGGVATTVCQP-NEYIVPDNA--VVGDVLVLT--------KPLGTQVAVNAHQWLDQPERWNRIKLIV 258 (412)
Q Consensus 200 ----------~~i~~t~iG~~~~-~~~~~~~~a--~~GD~Iilt--------g~lG~~~~~~a~~~l~~~~~~~~l~~~l 258 (412)
..+.+|+..-|+. .+.++++-. .+|+..++. ..+|.+++...|..+- .+... +
T Consensus 801 k~~ge~VkaPgtLvIsayapc~dv~k~vtP~Lk~~~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~QiG--~d~Pd----l 874 (1320)
T KOG1907|consen 801 KWDGEVVKAPGTLVISAYAPCPDVTKTVTPDLKANVDGSKTSLLWIDLANSKMRLGGSALAQVYSQIG--DDCPD----L 874 (1320)
T ss_pred eeCCeEEecCceEEEEeeccCCCcceeecccccCCCCCCceEEEEEEccccccccchHHHHHHHHHhC--CCCCC----c
Confidence 2444455555554 455666544 455553221 3578877755553221 11111 1
Q ss_pred CH-HHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHH--HHHHH
Q psy4307 259 SE-DDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMA--AVAKA 335 (412)
Q Consensus 259 ~~-~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~--~~~~~ 335 (412)
.. +.+.+ ++. ....+..+..|.|-||+|||||+.++.|||.++++|++|+++..-..-... -++|+
T Consensus 875 ~~~~~lk~----~f~-------~vqqL~~~~ii~AgHD~SDGGLlvt~lEMAfag~~gi~idl~~~~~~~~~~~~LF~EE 943 (1320)
T KOG1907|consen 875 DNFDELKK----FFS-------VVQQLLNEGIILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILFAEE 943 (1320)
T ss_pred cchHHHHH----HHH-------HHHHHHhcCceeecccccCCchhHHHHHHHhhcccceEEecCCccccccHHHHHHHHh
Confidence 11 12221 111 123444566799999999999999999999999999999998632111111 22333
Q ss_pred cCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEe--C-CceEEEEcCCeEEEeCCC
Q psy4307 336 CGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEK--G-NRTARIIDKPRVIEVPAK 405 (412)
Q Consensus 336 ~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~--~-~~~v~i~~~g~~~~~~~~ 405 (412)
+ |.++-|...+.+++++.++++ |+++..||++.. + +.++.+..+|..+ +..+
T Consensus 944 l----------------G~v~evs~~dl~~v~~~~~~~-gv~~~~ig~~~~~~g~~~~i~~~~~g~~~-~~~~ 998 (1320)
T KOG1907|consen 944 L----------------GAVLEVSDTDLEKVLEIFSEA-GVKCEYIGKASAVFGQDAHIKISVNGHLI-LNEK 998 (1320)
T ss_pred h----------------CeEEEeccccHHHHHHHHHhc-CCcceeeeeeccccCCCceEEEecCCeEE-ecch
Confidence 2 368888888889999999998 999999998733 2 2344444455443 4433
No 51
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.52 E-value=2.5e-06 Score=97.59 Aligned_cols=195 Identities=12% Similarity=0.044 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcCCeEEcccccccC----------ceeEeEEEEEEecCCccccCCCCCCCCEEEEeccc----ChHH
Q psy4307 172 PLMLRGFKDSALEAGTAVTGGQTVVNP----------WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPL----GTQV 237 (412)
Q Consensus 172 ~~i~~Gi~~a~~~~gv~ivGG~T~~~~----------~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~l----G~~~ 237 (412)
..+++--.++.+++|+|+++|-+-..+ .|+.-...+|.++.. -+.+...++||.|++.|.. |.++
T Consensus 223 ~~~~~~~~~~ln~~G~P~i~Gf~r~~~~~~~~~~~~~kpim~~G~lg~i~~~-~~~k~~~~~G~~iV~lGg~~~~~G~~G 301 (1202)
T TIGR01739 223 TAMLQAQASALRASGVPTCGGFIRLISKNKLSLPTPYTPTYNTSILDRLCHV-TINTADEPPGQDIVALGQFEPSLLPDT 301 (1202)
T ss_pred HHHHHHHHHHHHhcCCCccceEEEEecccccccccCCCCeEEccccCCCChh-hcccccCCCCCEEEEECCCCCCCCCCC
Confidence 366778888999999999999866543 244444466777654 3566678999999999864 4443
Q ss_pred HHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcC-ceEEecCCCChHHHHHHhHHHhCCCeE
Q psy4307 238 AVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYN-AHGATDVTGFGLLGHAQTLAKHQKNEV 316 (412)
Q Consensus 238 ~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~-i~a~~DiT~GGL~~~L~ema~~s~~g~ 316 (412)
.. +.. + =++....+ .++.++.+. ...+... ..+.||..-||+..+|.||+. .+|+
T Consensus 302 ~~--~s~--~----------~s~~~~~~-iq~~i~~~~-------~~~~~~~i~~sI~D~Gagg~sn~l~El~~--~~G~ 357 (1202)
T TIGR01739 302 PP--LLY--A----------DSPLDVNK-ILTALALLT-------DDVKTPCIVGSIRPLGPCSVKEHLTALLP--PCGA 357 (1202)
T ss_pred Cc--ccc--C----------CCHHHHHH-HHHHHHHHH-------HhccCCeeEEEecCCCCchHHHHHHHHhc--cCce
Confidence 32 110 0 12322222 222222211 1122222 389999999999999999998 6799
Q ss_pred EEEccCCCChH-H-HHHH----HHHcCChhhhc-cCCcccccceEEEEEcc----------ccHHHHHHHHHhcCCCcee
Q psy4307 317 SFVIHNLPVIA-K-MAAV----AKACGNMFQLL-QGHSAETSGGLLICLPR----------EQAAAYCKDIEKQEGYQAW 379 (412)
Q Consensus 317 ~I~~~~iPv~~-~-~~~~----~~~~~~~~~l~-~~~d~etsGglLi~v~~----------e~a~~~~~~l~~~~g~~a~ 379 (412)
+|+++++|... . ...+ .+... +++ .-|--+++-.++++|++ +..+.|.+.++.. +.+++
T Consensus 358 ~i~L~~lP~~~~s~L~~~~~~~~e~~e---~~v~~~~~N~~~~~~~LaV~~~~~~~~~~~~~~l~~~~~ic~re-~cp~~ 433 (1202)
T TIGR01739 358 ELDLSNLPDEVVAALARSSPANRVENE---KMVKQYFLNVVCSVVFLTVKNTPHNTGTEGVTPLERLKTACRMF-GCPVK 433 (1202)
T ss_pred EEEhHhCCchhhccccCCChhhhHHHH---HHhhhhcccccceeEEEEECCcccccccccchHHHHHHHHHHHC-CCCEE
Confidence 99999999542 0 0000 00010 000 01222456678899988 6778888888886 99999
Q ss_pred EEEEEEeCCceEEEEcC
Q psy4307 380 IIGIVEKGNRTARIIDK 396 (412)
Q Consensus 380 vIG~V~~~~~~v~i~~~ 396 (412)
+||++++.. .+++.++
T Consensus 434 vlG~~t~~~-~l~v~~~ 449 (1202)
T TIGR01739 434 VLGKLVPLP-GLHIVSD 449 (1202)
T ss_pred EEEEEeCCC-cEEEEeC
Confidence 999999865 4666654
No 52
>KOG1907|consensus
Probab=97.84 E-value=7e-05 Score=80.47 Aligned_cols=264 Identities=13% Similarity=0.056 Sum_probs=162.1
Q ss_pred eeEEEecCC-CCCCCChhHHHHHHHHHHHhHhhhcC--ccch----HHHHhhhhcCCC-CChh-----------hHhhHH
Q psy4307 111 SLVQTTDFF-YPLVDDPYMMGKIACSNVLSDLYAMG--VTEC----DNLLMLVAVSTK-MTEK-----------ERDVVI 171 (412)
Q Consensus 111 ~lv~ttD~~-~p~~~dp~~~G~~av~~~vsDIaamG--a~P~----~~~l~~l~lp~~-~~~~-----------e~~~~l 171 (412)
.++++...| +|....||-.+....-.-++|.-|.| +.++ ++.+..|++|-. .|-+ ....++
T Consensus 305 ~ll~~aETHN~PtAVsPfpGA~TGtGGrIRD~~atGrGs~~~agtaGysvg~LnipG~~qPwE~l~f~yP~~iA~pl~Im 384 (1320)
T KOG1907|consen 305 DLLFKAETHNHPTAVSPFPGATTGTGGRIRDEGATGRGSYEIAGTAGYSVGDLNIPGYKQPWEDLDFGYPYHIASPLDIM 384 (1320)
T ss_pred ceEEEeeccCCCcccCCCCCCccCCCceeeccccccccceeeecccccccccccCCCCCCCCcccccCCccccCCHHHHH
Confidence 577888875 68888999877777777788888865 4444 122334555521 1110 111334
Q ss_pred HHHHHHHHHHHHHcCCeEEccccccc--------------CceeEeEEEEEEecCCccccCCCCCCCCEEEEecc----c
Q psy4307 172 PLMLRGFKDSALEAGTAVTGGQTVVN--------------PWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKP----L 233 (412)
Q Consensus 172 ~~i~~Gi~~a~~~~gv~ivGG~T~~~--------------~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~----l 233 (412)
-+.-.|..+.-+++|=|++.|-+-.. -.|+.---.+|.+++.. .+.....||..|+..|. +
T Consensus 385 IEAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~~gerrey~KPIMfsgGiG~i~~~~-~~K~~~apg~~likiGGp~yrI 463 (1320)
T KOG1907|consen 385 IEASNGASDYGNKFGEPVISGYARTFGMRVLLENGERREYHKPIMFSGGIGTIRKQH-ARKEPIAPGQLLIKIGGPVYRI 463 (1320)
T ss_pred hhCcCChhhhcccccchhhhhhhhhhcccccccCccccccccceEeecccCccCHHH-hhcCCCCCCCEEEEecCceEEE
Confidence 44456888999999999998864321 11544444788887644 44455899999999874 2
Q ss_pred C--hHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHh
Q psy4307 234 G--TQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKH 311 (412)
Q Consensus 234 G--~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~ 311 (412)
| .+++. .+ . +.+... .+....+++.-.+.-..+-++.+....+..+.-+-+.||..-||....|.|+.+.
T Consensus 464 G~GGGAAS--Sv-~-~G~g~a----eLDFaaVQRGdaEM~~kl~rVvrAC~~lge~NpI~sIHDqGAGGn~NvlkELV~~ 535 (1320)
T KOG1907|consen 464 GVGGGAAS--SV-V-QGEGSA----ELDFAAVQRGDAEMERKLQRVVRACAELGENNPIQSIHDQGAGGNGNVLKELVED 535 (1320)
T ss_pred ecccchhh--hh-h-cCCCcc----ccchHHhhcCCHHHHHHHHHHHHHHHHhcCCCceeEeeccCCCccccccHhhccc
Confidence 4 33432 21 1 111111 1222111111000111112233444455555569999999999999999999999
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceE
Q psy4307 312 QKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTA 391 (412)
Q Consensus 312 s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v 391 (412)
.++|++|+.+.+++.+......+. |-.|.+-.-.+.|.+++.+.+.+..++. ..+..+||+++.+. ++
T Consensus 536 ~~~Ga~~~~r~~~~gdpsmS~~Ei----------W~aEyQE~~allv~a~~l~~le~IckRE-Rcp~svVG~vt~eq-R~ 603 (1320)
T KOG1907|consen 536 NDLGATFDSRTFQLGDPSMSPMEI----------WCAEYQENYALLVKAEDLDILESICKRE-RCPVSVVGEVTGEQ-RV 603 (1320)
T ss_pred cCCccEEEeeeeecCCCCCCHHHH----------hhhhhhhcceeeeCHHHHHHHHHHHHhc-cCCeeEEEEEccCc-eE
Confidence 999999999999876542211111 1112233456778888888888888875 78999999999764 46
Q ss_pred EEEc
Q psy4307 392 RIID 395 (412)
Q Consensus 392 ~i~~ 395 (412)
.+.+
T Consensus 604 ~l~d 607 (1320)
T KOG1907|consen 604 ILLD 607 (1320)
T ss_pred EEec
Confidence 6654
No 53
>PHA03366 FGAM-synthase; Provisional
Probab=97.48 E-value=0.0014 Score=75.82 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHHcCCeEEcccccccCc----------eeEeE-EEEEEecCCccccCCCCCCCCEEEEeccc--Ch
Q psy4307 169 VVIPLMLRGFKDSALEAGTAVTGGQTVVNPW----------CTIGG-VATTVCQPNEYIVPDNAVVGDVLVLTKPL--GT 235 (412)
Q Consensus 169 ~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~----------~~i~~-t~iG~~~~~~~~~~~~a~~GD~Iiltg~l--G~ 235 (412)
..+...++--.+..+++|.|+++|-+-..+. ..++. ..+|.++.. .+.....++||.|+..|.. |.
T Consensus 310 ~~~~~~~~~~~~~lnk~G~Pvi~Gf~r~~~~~~~~~~~~~~~m~~~~~~~g~~~~~-~~~~~~~~~g~~vv~lG~y~~~~ 388 (1304)
T PHA03366 310 RQIAETLEAQARSLNCSGVPVVGGFLRTIPTTLALISPLPNNMLTFTSLLSTISTI-ALDTARYRPGQYIVALGSFEPSS 388 (1304)
T ss_pred HHHHHHHHHHHHHHhhcCCCEeccEeEEeccccccccccCCceeeecccccccchh-hhccCCCCCCCEEEEEcCceecC
Confidence 4556677788889999999999998654421 12221 255666543 3455557899999999954 22
Q ss_pred HHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCe
Q psy4307 236 QVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNE 315 (412)
Q Consensus 236 ~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g 315 (412)
+....-+. .. -+.-++ .+.+++...|... +.+..-..+.||-..+|...+|.|+++ ..|
T Consensus 389 g~~a~~~~--~~----------~S~~~~-navqr~~~~m~~~------~~~~~v~~si~d~g~~~~~~~L~elv~--p~G 447 (1304)
T PHA03366 389 GPDTPPYL--YR----------DSGLEA-NKILQALKLFYSL------LPGPCISGSSRPLGPASVLEHLLALCP--PGG 447 (1304)
T ss_pred CCCCCCcc--cc----------cCHHHH-HHHHHHHHHHHhh------cCCceEEEecCCCCcchHHHHHHHHhc--cCc
Confidence 21110111 00 011111 1223333333211 011112358999999999999999998 468
Q ss_pred EEEEccCCCChHHHHHHHHHcCC-----hh-----hhccCCcccccceEEEEEccc--------cHHHHHHHHHhcCCCc
Q psy4307 316 VSFVIHNLPVIAKMAAVAKACGN-----MF-----QLLQGHSAETSGGLLICLPRE--------QAAAYCKDIEKQEGYQ 377 (412)
Q Consensus 316 ~~I~~~~iPv~~~~~~~~~~~~~-----~~-----~l~~~~d~etsGglLi~v~~e--------~a~~~~~~l~~~~g~~ 377 (412)
+.|+++++| +.+....+..+. +. .++..... -+.++++++ ..+.+.+.++.. +.+
T Consensus 448 ~~i~~~~lp--d~tls~le~~~~e~qe~~~~~v~~~flnv~~~----~~~l~i~~~~~~~~~~~~l~~l~~ic~re-rcp 520 (1304)
T PHA03366 448 LLLFLSALP--EDVVSGLKPFSASNRETNEEIVKQYFLNVYCS----VVFLVIKNTHEGGEGVTPLDALKRACRLA-GCP 520 (1304)
T ss_pred eEEEhhhCC--hHHhhhhhcccccchhHHHHHhhhhhcccccc----eEEEEEcCcccccccccHHHHHHHHHHHc-CCC
Confidence 999999999 444433332221 11 12222222 256777777 677788877775 999
Q ss_pred eeEEEEEEeCCceEEEEc
Q psy4307 378 AWIIGIVEKGNRTARIID 395 (412)
Q Consensus 378 a~vIG~V~~~~~~v~i~~ 395 (412)
..++|++++..+ +.+.+
T Consensus 521 ~~vvG~~t~~~~-~~~~d 537 (1304)
T PHA03366 521 VHILGRTVPLPG-IHFVN 537 (1304)
T ss_pred EEEEEEEecCCc-EEEEc
Confidence 999999998654 55554
No 54
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=95.58 E-value=0.7 Score=45.05 Aligned_cols=192 Identities=13% Similarity=0.071 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHcCCeEEcccccccC--c-------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHH
Q psy4307 169 VVIPLMLRGFKDSALEAGTAVTGGQTVVNP--W-------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAV 239 (412)
Q Consensus 169 ~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~--~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~ 239 (412)
..+...++.=.+..+..|+|++||-....+ . ..+.....+.+. ...+.....++||.|+..|..=....
T Consensus 58 ~~~~~~l~aq~~~l~~~GvPv~~GF~R~i~~~~~~~~~~~~~~~~s~l~~~~-~~~l~~~~~~~g~~iv~LG~F~p~~~- 135 (282)
T PF12818_consen 58 RQITTALQAQARSLNASGVPVVGGFIRPIDSHLSGPVPLNVLTFTSILGSIS-QTNLNTARPRPGQYIVCLGDFEPTPG- 135 (282)
T ss_pred HHHHHHHHHHHHHHhhcCCCccCcEeEEecCcccccccCceEEEEEEEcccc-hhhhhccCCCCCCEEEEecCCcccCC-
Confidence 455566777788889999999999765442 1 122223334343 34466677789999999886421000
Q ss_pred HHHHhhcC-chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhh-cCceEEecCCCChHHHHHHhHHHhCCCeEE
Q psy4307 240 NAHQWLDQ-PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHK-YNAHGATDVTGFGLLGHAQTLAKHQKNEVS 317 (412)
Q Consensus 240 ~a~~~l~~-~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~-~~i~a~~DiT~GGL~~~L~ema~~s~~g~~ 317 (412)
-.. +-.+ .-+..++.+..+ +++. + ...... .....++..-..=+..+|.+++. ..|+.
T Consensus 136 -----~d~~p~~y-----~dS~~~~~~i~~-aL~~---f----~~~~~~~cis~~~r~~~~~sv~~~L~aL~~--~~G~~ 195 (282)
T PF12818_consen 136 -----PDTPPYTY-----RDSGLEQNKILQ-ALQQ---F----YSTLESPCISGSIRPPGPASVKEHLLALCH--PGGAR 195 (282)
T ss_pred -----CCCCCccc-----ccCHHHHHHHHH-HHHH---H----HHhcCCCcEEeecCCCCchhHHHHHHHhcC--CCceE
Confidence 000 0000 011222211111 1111 1 111111 12456667666677888888876 47899
Q ss_pred EEccCCCChHHHHHHHHHcCC-----h-----hhhccCCcccccceEEEEEcccc-------H----HHHHHHHHhcCCC
Q psy4307 318 FVIHNLPVIAKMAAVAKACGN-----M-----FQLLQGHSAETSGGLLICLPREQ-------A----AAYCKDIEKQEGY 376 (412)
Q Consensus 318 I~~~~iPv~~~~~~~~~~~~~-----~-----~~l~~~~d~etsGglLi~v~~e~-------a----~~~~~~l~~~~g~ 376 (412)
|+++++|- ++....+.... + -.++..... -++++++.+. . +.+...++.. |.
T Consensus 196 l~lS~LP~--~i~~~L~~~~~~~~~~~~~~i~~~FLNv~~~----~vfl~V~n~~~~~~~~~~~~~l~~L~~~c~~~-gc 268 (282)
T PF12818_consen 196 LDLSALPQ--EIVSQLKRSPPENREHNEEIIKQHFLNVYCS----VVFLVVSNTPIDTNTDQGFGPLDALKRACRLC-GC 268 (282)
T ss_pred EEhhcCCH--HHHHHhccCCchhHHHHHHHHHhhhhccccc----eEEEEEecCCCCCcccccccHHHHHHHHHHHC-CC
Confidence 99999983 22111111100 0 112222222 2555554433 1 4455555555 99
Q ss_pred ceeEEEEEEeCCc
Q psy4307 377 QAWIIGIVEKGNR 389 (412)
Q Consensus 377 ~a~vIG~V~~~~~ 389 (412)
+..+||++.+..|
T Consensus 269 ~~~iLG~t~~~~G 281 (282)
T PF12818_consen 269 PVHILGRTCPEPG 281 (282)
T ss_pred CEEEEeeeccCCC
Confidence 9999999987654
No 55
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=36.26 E-value=21 Score=28.57 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=27.0
Q ss_pred CCCccCCCCcccceeeccCCCcccccCCHHHHHHHH
Q psy4307 34 FDPVVHDLDATFRLCRFADLKGRGCKVPQEVLAKLL 69 (412)
Q Consensus 34 ~~~~~~~~~~~~~lt~~~~~~GcggK~~~~~L~~~l 69 (412)
||-.+--.++..|+..|..++||-|.+-+..++.+.
T Consensus 17 ~ne~~g~Fe~yv~viaf~tCGgCpGrlvpn~~k~lk 52 (101)
T COG5561 17 ANEGEGKFEEYVRVIAFITCGGCPGRLVPNQIKQLK 52 (101)
T ss_pred HhcccccccccEEEEEEEEcCCCCcchhHHHHHHHh
Confidence 444444455568999999999999988888777544
No 56
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.53 E-value=98 Score=31.10 Aligned_cols=92 Identities=8% Similarity=-0.031 Sum_probs=52.7
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCCCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPL 173 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~ 173 (412)
+..|-+++.-+.. +..|+++.|...-....++..-.....-++.++..+||.-+. ++ +.+.++.++ ++...-.+
T Consensus 70 ~~yG~~a~~~~~~--~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk-~l--v~~~~d~~~-~~~~~~~~ 143 (340)
T PRK12858 70 PEYGLPAAKVRDP--NCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVK-LL--LYYRPDEDD-AINDRKHA 143 (340)
T ss_pred cccChhhhcccCC--CCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEE-EE--EEeCCCcch-HHHHHHHH
Confidence 4456666632333 345888876210001112222335556667889999999763 33 323333232 12244555
Q ss_pred HHHHHHHHHHHcCCeEEc
Q psy4307 174 MLRGFKDSALEAGTAVTG 191 (412)
Q Consensus 174 i~~Gi~~a~~~~gv~ivG 191 (412)
.++-+.+.|+++|+|++-
T Consensus 144 ~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 144 FVERVGAECRANDIPFFL 161 (340)
T ss_pred HHHHHHHHHHHcCCceEE
Confidence 689999999999999875
No 57
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=27.48 E-value=74 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=24.3
Q ss_pred eEeEEEEEEecCCccccC----CCCCCCCEEEEeccc
Q psy4307 201 TIGGVATTVCQPNEYIVP----DNAVVGDVLVLTKPL 233 (412)
Q Consensus 201 ~i~~t~iG~~~~~~~~~~----~~a~~GD~Iiltg~l 233 (412)
-.+.|+++++..++.+.. .-.++||.||+.|.-
T Consensus 111 ~TGaTIIAI~r~~e~I~SPgPy~vle~gDtlvviG~~ 147 (162)
T COG0490 111 NTGATVIAIVRNEEKILSPGPYTVLEAGDTLVVIGEE 147 (162)
T ss_pred ccCcEEEEEEecCcEecCCCchhhhcCCCEEEEEecc
Confidence 467889998887554433 336899999999864
No 58
>PRK12403 putative aminotransferase; Provisional
Probab=27.09 E-value=65 Score=33.65 Aligned_cols=54 Identities=7% Similarity=-0.120 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChH
Q psy4307 173 LMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQ 236 (412)
Q Consensus 173 ~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~ 236 (412)
..++++.+.|+++|+-++-=++. |.+|+.-+.-.....+++| |.+++.|.+|.+
T Consensus 243 ~yl~~lr~lc~~~g~lLI~DEV~---------tGfGRtG~~~a~e~~gv~P-Div~~gK~lggG 296 (460)
T PRK12403 243 SYWPEIQRICRQYDVLLCADEVI---------GGFGRTGEWFAHEHFGFEP-DTLSIAKGLTSG 296 (460)
T ss_pred HHHHHHHHHHHHcCCEEEEeccc---------cCCCcCchhhhhhhcCCCC-CeEEEccccccc
Confidence 46899999999999998842221 2334332110112345666 788887777654
No 59
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=25.64 E-value=1.2e+02 Score=21.60 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=16.3
Q ss_pred CceEEEEcCCeEEEeCCCCCC
Q psy4307 388 NRTARIIDKPRVIEVPAKEKD 408 (412)
Q Consensus 388 ~~~v~i~~~g~~~~~~~~~~~ 408 (412)
.+.+++..+|++..++||.++
T Consensus 9 ~ngiYiV~~G~v~~i~pP~sG 29 (50)
T PF13128_consen 9 ENGIYIVKDGEVTFIEPPESG 29 (50)
T ss_pred CCeEEEEECCeEEEcCCCCCC
Confidence 345788899999999888753
No 60
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=25.56 E-value=62 Score=22.21 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=14.8
Q ss_pred HhhHHHHHHHH---HHHHHHHcCCe
Q psy4307 167 RDVVIPLMLRG---FKDSALEAGTA 188 (412)
Q Consensus 167 ~~~~l~~i~~G---i~~a~~~~gv~ 188 (412)
+..-++.+..| +.++|+.||||
T Consensus 5 l~~Ai~~v~~g~~S~r~AA~~ygVp 29 (45)
T PF05225_consen 5 LQKAIEAVKNGKMSIRKAAKKYGVP 29 (45)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHT--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcC
Confidence 33456666677 88999999987
No 61
>PF00849 PseudoU_synth_2: RNA pseudouridylate synthase This Prosite family is a subset of the Pfam family. This Prosite family is a subset of the Pfam family.; InterPro: IPR006145 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. This entry represents several different pseudouridine synthases from family 3, including: RsuA (acts on small ribosomal subunit), RluA, RluB, RluC, RluD, RluE and RluF (act on large ribosomal subunit). RsuA from Escherichia coli catalyses formation of pseudouridine at position 516 in 16S rRNA during assembly of the 30S ribosomal subunit [, ]. RsuA consists of an N-terminal domain connected by an extended linker to the central and C-terminal domains. Uracil and UMP bind in a cleft between the central and C-terminal domains near the catalytic residue Asp 102. The N-terminal domain shows structural similarity to the ribosomal protein S4. Despite only 15% amino acid identity, the other two domains are structurally similar to those of the tRNA-specific psi-synthase TruA, including the position of the catalytic Asp. Our results suggest that all four families of pseudouridine synthases share the same fold of their catalytic domain(s) and uracil-binding site. RluB, RluC, RluD, RluE and RluF are homologous enzymes which each convert specific uridine bases in E. coli ribosomal 23S RNA to pseudouridine: RluB modifies uracil-2605. RluC modifies uracil-955, U-2504, and U-2580. RluD modifies uracil-1911, U-1915, and U-1917. RluE modifies uracil-3457. RluF modifies uracil-2604, and to a lesser extent U-2605. RluD also possesses a second function related to proper assembly of the 50S ribosomal subunit that is independent of Psi-synthesis [, ]. Both RluC and RluD have an N-terminal S4 RNA binding domain. Despite the conserved topology shared by RluC and RluD, the surface shape and charge distribution are very different. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 2GML_A 3DH3_B 1VIO_A 2I82_B 1XPI_B 1V9K_B 1PRZ_A 1V9F_A 2IST_A 1QYU_A ....
Probab=23.41 E-value=1e+02 Score=26.60 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=31.4
Q ss_pred hhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEE
Q psy4307 341 QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 385 (412)
Q Consensus 341 ~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~ 385 (412)
.+..-.|.+|||-||++-+++.+.++.+.+++. .+.-..+..|.
T Consensus 42 ~~v~RLD~~TsGlll~a~~~~~~~~l~~~f~~~-~~~K~Y~a~v~ 85 (164)
T PF00849_consen 42 YPVHRLDRDTSGLLLFAKDKEAAAKLSKQFPKR-KVEKTYLALVE 85 (164)
T ss_dssp EESS---TT-EEEEEEESSHHHHHHHHHHHHTT-CSEEEEEEEEC
T ss_pred EECCCCCccccCCeeccCCcccccccccccccC-CCcEEEEEeEc
Confidence 334457899999999999999888998888775 66666777665
No 62
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=22.72 E-value=46 Score=19.74 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=7.5
Q ss_pred cCCCcccccCCHH
Q psy4307 51 ADLKGRGCKVPQE 63 (412)
Q Consensus 51 ~~~~GcggK~~~~ 63 (412)
+.+|-||||+.+.
T Consensus 9 aachpc~ckv~rp 21 (26)
T PF07829_consen 9 AACHPCGCKVGRP 21 (26)
T ss_dssp SS--TTTSTST--
T ss_pred ccccccccccCCC
Confidence 5678899998763
No 63
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.13 E-value=3e+02 Score=20.64 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.4
Q ss_pred eEEEEEccccHHHHHHHHHhcCCCcee
Q psy4307 353 GLLICLPREQAAAYCKDIEKQEGYQAW 379 (412)
Q Consensus 353 glLi~v~~e~a~~~~~~l~~~~g~~a~ 379 (412)
|+-+-+++++.+.+.+.|+++ ++...
T Consensus 42 G~al~~~~~d~~~i~~~l~~~-~i~~~ 67 (73)
T PF11823_consen 42 GLALRFEPEDLEKIKEILEEN-GIEYE 67 (73)
T ss_pred CEEEEEChhhHHHHHHHHHHC-CCCee
Confidence 588888889999999999987 76543
Done!