Query psy4307
Match_columns 412
No_of_seqs 328 out of 2127
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:11:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fd5_A Selenide, water dikinas 100.0 4.6E-80 1.6E-84 624.6 31.0 381 29-412 4-387 (394)
2 2zod_A Selenide, water dikinas 100.0 5.4E-64 1.8E-68 499.7 23.1 315 43-393 9-344 (345)
3 2yyd_A Selenide, water dikinas 100.0 2.4E-63 8.1E-68 494.6 22.1 313 42-389 8-341 (345)
4 3u0o_A Selenide, water dikinas 100.0 5.4E-62 1.9E-66 485.3 20.8 314 42-387 3-337 (347)
5 3mcq_A Thiamine-monophosphate 100.0 3.6E-50 1.2E-54 396.0 25.8 284 94-404 22-312 (319)
6 2z1u_A Hydrogenase expression/ 100.0 1.3E-50 4.4E-55 403.0 21.6 313 47-408 7-337 (343)
7 2z1e_A Hydrogenase expression/ 100.0 2.5E-49 8.5E-54 392.9 26.4 315 52-408 7-332 (338)
8 3vti_C Hydrogenase maturation 100.0 2.5E-48 8.6E-53 382.0 23.3 281 94-408 17-308 (314)
9 2rb9_A HYPE protein; hydrogena 100.0 8.1E-48 2.8E-52 381.5 25.8 302 61-408 13-328 (334)
10 3m84_A Phosphoribosylformylgly 100.0 4.7E-45 1.6E-49 363.5 20.9 285 94-393 40-349 (350)
11 2yxz_A Thiamin-monophosphate k 100.0 1.6E-44 5.4E-49 354.4 22.3 269 94-399 26-302 (311)
12 3p4e_A Phosphoribosylformylgly 100.0 2.3E-44 7.8E-49 358.4 21.2 278 94-387 44-339 (349)
13 2z01_A Phosphoribosylformylgly 100.0 6E-44 2E-48 355.6 20.1 284 94-393 38-342 (348)
14 3c9u_A Thiamine monophosphate 100.0 1.6E-43 5.6E-48 351.3 22.3 264 97-399 61-333 (342)
15 2btu_A Phosphoribosyl-aminoimi 100.0 3.7E-43 1.3E-47 349.6 16.9 284 94-393 36-340 (346)
16 2v9y_A Phosphoribosylformylgly 100.0 6.3E-42 2.2E-46 339.1 16.1 286 94-394 8-319 (334)
17 3ac6_A Phosphoribosylformylgly 100.0 1.1E-38 3.8E-43 345.4 20.3 304 53-399 39-351 (725)
18 1vk3_A Phosphoribosylformylgly 100.0 2.5E-38 8.7E-43 336.1 19.5 290 52-399 41-340 (615)
19 3ac6_A Phosphoribosylformylgly 100.0 4.8E-35 1.6E-39 316.9 22.1 268 94-398 424-702 (725)
20 3kiz_A Phosphoribosylformylgly 100.0 1.2E-31 4.1E-36 266.4 19.1 283 96-394 33-384 (394)
21 3mdo_A Putative phosphoribosyl 100.0 1.4E-31 4.7E-36 265.6 19.2 282 96-394 32-381 (389)
22 3ugj_A Phosphoribosylformylgly 100.0 1.1E-27 3.8E-32 269.0 27.2 265 95-399 683-980 (1303)
23 3ugj_A Phosphoribosylformylgly 99.9 4E-27 1.4E-31 264.5 21.1 279 94-396 262-599 (1303)
24 1vk3_A Phosphoribosylformylgly 99.9 4E-27 1.4E-31 250.1 12.7 211 94-385 395-614 (615)
25 3dhx_A Methionine import ATP-b 48.8 32 0.0011 26.9 5.7 36 350-386 63-100 (106)
26 2qrr_A Methionine import ATP-b 28.7 65 0.0022 24.7 4.4 33 351-384 66-100 (101)
27 1ihj_A INAD; intermolecular di 27.1 38 0.0013 25.4 2.7 47 185-231 19-66 (98)
28 2rps_A Chemokine; peptide, imm 24.5 33 0.0011 20.8 1.4 23 15-39 10-32 (32)
29 2gjf_A Designed protein; proca 22.2 80 0.0027 22.9 3.6 28 353-381 48-75 (78)
30 3ced_A Methionine import ATP-b 21.7 1.1E+02 0.0037 23.5 4.4 31 351-382 63-96 (98)
31 2h2b_A Tight junction protein 21.0 83 0.0028 23.9 3.7 47 184-231 20-66 (107)
32 1vjq_A Designed protein; struc 20.1 1.1E+02 0.0036 22.2 3.9 28 353-381 40-67 (79)
33 2w4f_A Protein LAP4; structura 20.1 43 0.0015 25.0 1.8 47 185-231 16-62 (97)
34 3jxo_A TRKA-N domain protein; 20.0 1E+02 0.0035 22.4 3.9 32 203-234 40-74 (86)
No 1
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=100.00 E-value=4.6e-80 Score=624.56 Aligned_cols=381 Identities=71% Similarity=1.176 Sum_probs=311.6
Q ss_pred ccCCCCCCccCCCCcccceeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCC
Q psy4307 29 ALRRPFDPVVHDLDATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHG 108 (412)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~ 108 (412)
..|++|||+.|||+++||||+|+|++|||||++++.|+++|.++...... .++ ++++.+.+.+++||||||++++++
T Consensus 4 ~~~~~~~~~~~~l~~~~~lt~~~~~~gc~~Ki~~~~L~~~l~~~~~~~~~-~~~--~~~~~~~~~l~~GdDaAV~~~~~~ 80 (394)
T 3fd5_A 4 STRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQ-EDE--QFLGAVMPRLGIGMDTCVIPLRHG 80 (394)
T ss_dssp -------CGGGTCCTTCCGGGGSCCCTTCSBCCHHHHHHHHTTC------------------CCCBCTTSSSEEEECSST
T ss_pred ccCCCCCccccCCCccceeccccCCCceecccCHHHHHHHHHhCcccccc-ccc--cccccccccccCCCCeeEEecCCC
Confidence 68999999999999999999999999999999999999999876532110 022 555544566799999999999742
Q ss_pred CceeEEEecCCCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCe
Q psy4307 109 GLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTA 188 (412)
Q Consensus 109 ~~~lv~ttD~~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ 188 (412)
+..+|+|||+|+|++.|||++||+|+++|+||||||||+|+++++++|++|+.+++++.+++++++++|+.++|+++|++
T Consensus 81 ~~~lv~ttD~f~p~~~dP~~~G~~Ava~~lsDiaAmGA~P~~~~l~~l~~p~~~~~~~~~~~l~~i~~Gi~~~~~~~gv~ 160 (394)
T 3fd5_A 81 GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTS 160 (394)
T ss_dssp TCEEEEEEEEECCCSSCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEeeccCCcCCCHHHHHHHHHHHHHHHHHHCCchhHHHHhhhEecCCCCChhHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999999999999998435778999988887666679999999999999999999
Q ss_pred EEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHH
Q psy4307 189 VTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQ 268 (412)
Q Consensus 189 ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~ 268 (412)
|+||||..+|++++++|++|.+++++++++++++|||.|++||++|.++++++++++...++|+.++..++++.++++++
T Consensus 161 lvGGdT~~~p~~~i~~t~~G~v~~~~~l~~~~a~~GD~Iiltg~lG~~~~~~~~~~l~~~~~~~~l~~~~~~~~l~~~~~ 240 (394)
T 3fd5_A 161 VTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQ 240 (394)
T ss_dssp EEEEEEEEESSCEEEEEEEEEECGGGCCCTTCCCTTCEEEESSCBCHHHHHHHHHC------------CCCHHHHHHHHH
T ss_pred EEeeeEEEcCCcEEEEEEEEEEcCCceecCCCCCCCCEEEEECCccHHHHHHHHHHhhccchhhhhhccCCHHHHHHHHH
Confidence 99999999999999999999999889999999999999999999999988777665543344544555577777777777
Q ss_pred HHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcc
Q psy4307 269 RSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSA 348 (412)
Q Consensus 269 ~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~ 348 (412)
++.++|.++++.++.+++++.+|||||||+|||++||+|||++|++|++|++++||+.+.+.++|+.++.+|.+++++||
T Consensus 241 ~~~~~~~~l~~~~~~l~~~~~v~A~~DvT~gGL~~~L~ema~aSgvg~~I~~~~iPi~~~~~~~~~~~~~~~~l~~g~d~ 320 (394)
T 3fd5_A 241 EAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCP 320 (394)
T ss_dssp HHHHHHHSCSHHHHHHHHHTTCCEEEECCTTHHHHHHHHHHTTCSSSEEEEEEEEEEETTHHHHHHHTTTSSCGGGTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCceEEEeCCCcHHHHHHHHHHHhcCCcEEEEeccCCCCHHHHHHHHhcchhhhhhcccCc
Confidence 67777888888777888888899999999999999999999999999999999999999999999998877889999999
Q ss_pred cccceEEEEEccccHHHHHHHHHhc---CCCceeEEEEEEeCCceEEEEcCCeEEEeCCCCCCCCCC
Q psy4307 349 ETSGGLLICLPREQAAAYCKDIEKQ---EGYQAWIIGIVEKGNRTARIIDKPRVIEVPAKEKDGELW 412 (412)
Q Consensus 349 etsGglLi~v~~e~a~~~~~~l~~~---~g~~a~vIG~V~~~~~~v~i~~~g~~~~~~~~~~~~~~~ 412 (412)
||+||||++|++++++++++.++++ .|+++++||+|+++++.+++.++|+.++++++.++|++|
T Consensus 321 etsGgLL~~v~~~~~~~~~~~l~~~~~~~g~~a~~IG~V~~~~~~~~l~~~g~~i~~~~~g~~~~~~ 387 (394)
T 3fd5_A 321 ETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVN 387 (394)
T ss_dssp CSSCCEEEEECHHHHHHHHHHHHCC---CCCCCEEEEEEEESSSCEEEEEEEEEEEECC--------
T ss_pred ccCCcEEEEECHHHHHHHHHHHHhccccCCCCEEEEEEEEeCCceEEEEECCEEEEecccCCccccC
Confidence 9999999999999999999999974 178999999999988778888899999999999999998
No 2
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=100.00 E-value=5.4e-64 Score=499.72 Aligned_cols=315 Identities=30% Similarity=0.467 Sum_probs=248.4
Q ss_pred cccceeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCCCC
Q psy4307 43 ATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPL 122 (412)
Q Consensus 43 ~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~p~ 122 (412)
+.+|||+|++|+|||||+|++.|+++|.++.... +++ ++ +|+||||||++.+ +..+|+|||++.|.
T Consensus 9 ~~~~l~~~~~~~GCg~K~~~~~L~~~l~~l~~~~----~~~-~~-------~g~GDDaAvi~~~--~~~lv~ttD~~~~~ 74 (345)
T 2zod_A 9 HMVELLKLVRSSGCAAKVGPGDLQEILKGFNIYT----DES-TL-------VSIGDDAGVYEHN--GIIWVYTVDIITPV 74 (345)
T ss_dssp ---CGGGGCC----------CCCCHHHHHSCCCC----C-----------------CCCEEEET--TEEEEEEEEEECCS
T ss_pred cHHHHHHHhccCCcccccCHHHHHHHHHhcCCCC----CCc-cc-------cCCCCCeEEEecC--CcEEEEEecCCCCc
Confidence 4589999999999999999999999999876543 232 33 5789999999986 57899999999999
Q ss_pred CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCC-CCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCcee
Q psy4307 123 VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVST-KMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCT 201 (412)
Q Consensus 123 ~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~-~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~ 201 (412)
+.+||++||+|+++|+||||||||+|+ ++++++++|+ +++. ++++++++|+.++|+++|++++||||..+++++
T Consensus 75 v~~P~~~G~~Av~~~lsDiaAmGa~P~-~~l~~l~~p~~~~~~----~~l~~~~~Gi~~~~~~~gv~lvGGdt~~~~~~~ 149 (345)
T 2zod_A 75 VNDPYLWGAISTANALSDVYAMGGIPV-NALAISCFNNCELDI----EIFREVIRGALDKLREAKTVLLGGHTIDDKEPK 149 (345)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEECTTTCCH----HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSCE
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCch-hhhhhhhcCCCcCCH----HHHHHHHHHHHHHHHhccCcccCCceEECCcCc
Confidence 999999999999999999999999999 5777888985 4554 789999999999999999999999999999999
Q ss_pred EeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHH
Q psy4307 202 IGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIA 281 (412)
Q Consensus 202 i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~ 281 (412)
+++|++|.+++++++++++++|||.|++||++|.+.+...+.. . .+..+.... ..+.+.++++..
T Consensus 150 i~~t~~G~~~~~~~~~~~~a~~GD~iivtg~lG~~~~~~~~~~--~---------~~~~~~~~~----~~~~~~~~~~~~ 214 (345)
T 2zod_A 150 FGLSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKE--G---------ILKEEDINE----AIENMLALNDKA 214 (345)
T ss_dssp EEEEEEEECGGGCCCCSSCCCTTCEEEECSCBCHHHHHHHHHT--T---------SSCGGGGHH----HHHHHHSCSHHH
T ss_pred ccceeEEEecCccccccccCCCCCeEEEcCCCcchhHHHHHhh--c---------cccchhhhh----hHHhhhccchhH
Confidence 9999999999999999999999999999999999877544422 1 112221111 223344455555
Q ss_pred HHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHc-------------------C-Chhh
Q psy4307 282 ARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKAC-------------------G-NMFQ 341 (412)
Q Consensus 282 ~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~-------------------~-~~~~ 341 (412)
..++....+|+|||+|+|||+++|+|||++|++|++|++++||+++.++++|+.. + .+++
T Consensus 215 ~~~~~~~~v~a~~Dit~~GL~~~L~eia~~S~vg~~I~~~~iP~~~~~~~~~~~g~~p~~~~~n~~~~~~~~~~~~~~~~ 294 (345)
T 2zod_A 215 RNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWK 294 (345)
T ss_dssp HHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBCHHHHHHHHTTCCCHHHHHHHHHHTTTEECCCCHHH
T ss_pred hhhhcccccceeeccccchHHHHHHHHHhccCCCeEeeccccCcCHHHHHHHHcCCCchhhHHHHHHHHHHhhcCCCHHH
Confidence 6667777899999999999999999999999999999999999999999998742 1 1233
Q ss_pred hccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEE
Q psy4307 342 LLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARI 393 (412)
Q Consensus 342 l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i 393 (412)
+.-.|||||||||||+||+++++++++.++++ |+++++||+|+++++ ++|
T Consensus 295 ~~ll~DpqTSGGLL~tv~~~~~~~~~~~l~~~-g~~a~~IG~V~~~~~-~~V 344 (345)
T 2zod_A 295 LILLSDPVTSGGLLFTINKEKLEKIDETAKEL-EVNYWIIGETIAENV-LEV 344 (345)
T ss_dssp HHHHHCCCSSCCEEEEECGGGGGTHHHHHHHH-TCCCEEEEEEESSSS-EEE
T ss_pred HHhccCccccCcEEEEEcHHHHHHHHHHHHHc-CCCeEEEEEEEcCCC-CEE
Confidence 33357899999999999999999999999998 999999999998764 444
No 3
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=100.00 E-value=2.4e-63 Score=494.58 Aligned_cols=313 Identities=30% Similarity=0.447 Sum_probs=248.7
Q ss_pred CcccceeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCCC
Q psy4307 42 DATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYP 121 (412)
Q Consensus 42 ~~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~p 121 (412)
+++||||+|+++||||||+++++|+++|+++.... +++ ++ .++||||||+++++ +. +++|||+|+|
T Consensus 8 ~~~~~lt~~~~~~Gcg~K~~~~~l~~~l~~~~~~~----~~~-v~-------~g~GdDaAvi~~~~-~~-lv~ttD~~~~ 73 (345)
T 2yyd_A 8 RHMVELLKLVRSSGCAAKVGPGDLQEILKGFNIYT----DES-TL-------VSIGDDAGVYEHNG-II-WVYTVDIITP 73 (345)
T ss_dssp ----CGGGGCC----------CCCCHHHHHSCCCC----C-----------------CCCEEEETT-EE-EEEEEEEECC
T ss_pred cceeehhcccCCCCcccccCHHHHHHHHHhcCCCC----CCC-ee-------ecCCCCeEEEEECC-Ce-EEEEeCCCCC
Confidence 46789999999999999999999999999875533 221 33 46699999999985 54 9999999999
Q ss_pred CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCC-CChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCce
Q psy4307 122 LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTK-MTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWC 200 (412)
Q Consensus 122 ~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~-~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~ 200 (412)
.+.+||++||+||++|+|||+||||+|+ +++++|++|+. +++ ++++++++|+.++|+++|++|+||||..++++
T Consensus 74 ~~~~p~~~G~~ava~~lsDlaamGa~P~-~~l~~l~~p~~~~~~----~~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~~~ 148 (345)
T 2yyd_A 74 VVNDPYLWGAISTANALSDVYAMGGIPV-NALAISCFNNCELDI----EIFREVIRGALDKLREAKTVLLGGHTIDDKEP 148 (345)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEECTTTCCH----HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcCCchH-HHheeEeCCCCCCCH----HHHHHHHHHHHHHHHHcCCEEEeeEcccCCCc
Confidence 9999999999999999999999999999 68899999986 676 79999999999999999999999999999999
Q ss_pred eEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHH
Q psy4307 201 TIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRI 280 (412)
Q Consensus 201 ~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~ 280 (412)
++++|++|.+++++++++++++|||.|++||++|.+.+.+++.. . .++++.++.+ .+.+.++++.
T Consensus 149 ~i~~t~vG~v~~~~~~~~~~a~~GD~Iivtg~lG~~~~~~~~~~--~---------~~~~~~~~~~----~~~~~~~~~~ 213 (345)
T 2yyd_A 149 KFGLSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKE--G---------ILKEEDINEA----IENMLALNDK 213 (345)
T ss_dssp EEEEEEEEECGGGCCCCSSCCCTTCEEEECSCBCHHHHHHHHHT--T---------SSCGGGGHHH----HHHHHSCSHH
T ss_pred eEEEEEEEEEcCCceecCCCCCCCCEEEEECCCcHHHHHHHHHh--c---------CCCHHHHHHH----HHHHhcccHH
Confidence 99999999999888999999999999999999998776555421 1 1233333332 2344455555
Q ss_pred HHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcC--------------------Chh
Q psy4307 281 AARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACG--------------------NMF 340 (412)
Q Consensus 281 ~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~--------------------~~~ 340 (412)
+..++++..+|+|||||+|||+++|+|||++|++|++|++++||+++.++++|+.+. ..|
T Consensus 214 ~~~~~~~~~v~a~~DiS~gGL~~~L~e~a~~sgvg~~I~~~~iPi~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~~~ 293 (345)
T 2yyd_A 214 ARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNW 293 (345)
T ss_dssp HHHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBCHHHHHHHHTTCCCHHHHHHHHHHTTTEECCCCHH
T ss_pred HHHHHHhcCCeEEEECCCcHHHHHHHHHHHHcCCcEEEEhhcCCCCHHHHHHHHcCCCCcchhhhHHHHHhhccccCHHH
Confidence 666777778999999999999999999999999999999999999999999998631 113
Q ss_pred hhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCc
Q psy4307 341 QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNR 389 (412)
Q Consensus 341 ~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~ 389 (412)
++.-.|||||+||||++||+++++++++.++++ |+++++||+|+++++
T Consensus 294 ~~~llfdp~tsGgll~~v~~~~~~~~~~~l~~~-g~~a~vIG~v~~~~~ 341 (345)
T 2yyd_A 294 KLILLSDPVTSGGLLFTINKEKLEKIDETAKEL-EVNYWIIGETIAENV 341 (345)
T ss_dssp HHHHHHSCCSSCCEEEEECGGGGGTHHHHHHHH-TCCCEEEEEEESSSS
T ss_pred HHhhccCcccCceEEEEEcHHHHHHHHHHHHHc-CCCEEEEEEEeeCCc
Confidence 321237789999999999999999999999997 999999999998754
No 4
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=100.00 E-value=5.4e-62 Score=485.27 Aligned_cols=314 Identities=26% Similarity=0.397 Sum_probs=238.0
Q ss_pred CcccceeeccCCCcccccCCHHHHHHHHHhhc-cCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCC
Q psy4307 42 DATFRLCRFADLKGRGCKVPQEVLAKLLECLQ-QDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFY 120 (412)
Q Consensus 42 ~~~~~lt~~~~~~GcggK~~~~~L~~~l~~~~-~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~ 120 (412)
+++||||+|+|++|||||++++.|+++|.++. ... +++ +++| ++.||||||+++++ +..+++|||+|+
T Consensus 3 ~~~~~lt~~~~~~gc~~K~~~~~l~~~l~~~~~~~~----~~~-v~vg-----~~~gdDaavi~~~~-~~~lv~ttD~~~ 71 (347)
T 3u0o_A 3 ENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFV----DPN-LLVG-----NETRDDAAVYDLGN-GTSVISTTDFFM 71 (347)
T ss_dssp --------------------------CCCCSCCSSC----CCS-SBCS-----CSSCCSSEEEECTT-SEEEEEEEEEES
T ss_pred ccccccccCcCCCCceeecCHHHHHHHHHhcCCCCC----CCC-eEEC-----CCCCCceEEEEeCC-CcEEEEEecCCC
Confidence 56789999999999999999999999888752 211 222 5655 67799999999986 667999999999
Q ss_pred CCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcC-CCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc
Q psy4307 121 PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVS-TKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW 199 (412)
Q Consensus 121 p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp-~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~ 199 (412)
|.+.+||.+||+|+++|+|||+||||+|+ ++++++++| ++.++ ++++++++|+.++|+++|++|+||||.++|+
T Consensus 72 ~~~~~p~~~G~~ava~~lsDiaamGA~P~-~~l~~l~~p~~~~~~----~~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~~ 146 (347)
T 3u0o_A 72 PIVDNPFDFGRIAATNAISDIFAMGGKPI-MAIAILGWPINKLSP----EIAREVTEGGRYACRQAGIALAGGHSIDAPE 146 (347)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEECTTTSCH----HHHHHHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred CCccCHHHHHHHHHHHHHHHHHHcCCchH-HHHhheeCCCCCCCH----HHHHHHHHHHHHHHHHcCCEEEcceeccCCC
Confidence 99999999999999999999999999999 688899999 56666 7899999999999999999999999999999
Q ss_pred eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHH
Q psy4307 200 CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNR 279 (412)
Q Consensus 200 ~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~ 279 (412)
+++++|++|.+++++++++++++|||.|++||++|.+.+++++. +. .++.+.++. +.+.+.++++
T Consensus 147 ~~~~~t~vG~v~~~~~~~~~~a~~GD~iiltg~~G~~~~~~~~~--~~---------~~~~~~~~~----~~~~~~~~~~ 211 (347)
T 3u0o_A 147 PIFGLAVTGIVPTERVKKNSTAQAGCKLFLTKPLGIGVLTTAEK--KS---------LLKPEHQGL----ATEVMCRMNI 211 (347)
T ss_dssp CEEEEEEEEEEEGGGCCCSSCCCTTCEEEESSCBCHHHHHHHHH--TT---------CCCGGGTTH----HHHHHHSCCT
T ss_pred cEEEEEEEEEECCcceecCCCCCCCCEEEEeCCccHHHHHHHHH--hC---------cCChHHHHH----HHHHHHhhch
Confidence 99999999999988899999999999999999999887765542 11 122221111 2233444444
Q ss_pred HHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCC------hhhhc----------
Q psy4307 280 IAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGN------MFQLL---------- 343 (412)
Q Consensus 280 ~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~------~~~l~---------- 343 (412)
....++++..+|+|||||+|||+++|+|||++|++|++|++++||+++.++++|+.... |+.++
T Consensus 212 ~~~~l~~~~~v~a~~DiT~gGL~~~L~e~a~~sgvg~~I~~~~iPi~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~l~~~ 291 (347)
T 3u0o_A 212 AGASFANIEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGGTERNFASYGHLMGEMPRE 291 (347)
T ss_dssp HHHHHTTCTTEEEEEECCSSHHHHHHHHHHHHHTEEEEEETTTSCBCTTHHHHHTTCCCCHHHHHHHHHHGGGBCCCCHH
T ss_pred HHHHHHhcCCCEEEEcCCCcHHHHHHHHHHHHcCCeEEEeeccCCCCHHHHHHHHcCCCCchhhhhhhhhcccccccchH
Confidence 44566677789999999999999999999999999999999999999999999875211 11100
Q ss_pred ---cCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeC
Q psy4307 344 ---QGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKG 387 (412)
Q Consensus 344 ---~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~ 387 (412)
-.|||+++||||++|++++++++++.++++ |+++++||+|++.
T Consensus 292 ~~~ll~dp~~sggll~~v~~~~~~~~~~~l~~~-g~~a~~IG~V~~~ 337 (347)
T 3u0o_A 292 VRDLLCDPQTSGGLLLAVMPEAENEVKATAAEF-GIELTAIGELVPA 337 (347)
T ss_dssp HHHHHTCCCTTCCEEEEECHHHHHHHHHHHHHT-TCCCCCCEEEEEC
T ss_pred HHHhccCcccCccEEEEEcHHHHHHHHHHHHHc-CCCeEEEEEEeec
Confidence 147889999999999999999999999997 9999999999874
No 5
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=100.00 E-value=3.6e-50 Score=395.96 Aligned_cols=284 Identities=20% Similarity=0.288 Sum_probs=227.0
Q ss_pred CCCCCCeeEEecCCCCceeEEEecC------CCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDF------FYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKER 167 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~------~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~ 167 (412)
+++||||||+++++ +..|++|||+ |+|. .+||++||+|+++|+|||+||||+|+ ++++++++|+ +++
T Consensus 22 ~g~GdDaavi~~~~-~~~lv~ttD~~~~~~hf~~~-~~p~~~G~~ava~~lsDiaamGa~P~-~~l~~l~~p~-~~~--- 94 (319)
T 3mcq_A 22 LGVGDDAALIQPSP-GMELAVSADMLVANTHFYPN-IDPWLIGWKSLAVNISDMAAMGAQPR-WATLTIALPE-ADE--- 94 (319)
T ss_dssp TCCCGGGGCCCCCT-TCEEEEEEEEEECCTTSCCC-SCHHHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEESS-CCH---
T ss_pred cCCCCCEEEEeeCC-CCeEEEEecccCcccCCCCC-CCHHHHHHHHHHHHHHHHHHcCCchH-HhEEEEECCC-CCH---
Confidence 67899999999975 5689999996 3444 49999999999999999999999999 6889999995 666
Q ss_pred hhHHHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcC
Q psy4307 168 DVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQ 247 (412)
Q Consensus 168 ~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~ 247 (412)
++++++++|+.++|+++|++|+||||..++ +.+++|++|.+++++++++++++|||.|++||++|.+.++..+ ++.
T Consensus 95 -~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~-~~i~~t~iG~v~~~~~~~~~~a~~GD~ii~tg~~G~~~~g~~~--~~~ 170 (319)
T 3mcq_A 95 -DWISKFAAGFFACAAQFDIALIGGDTTRGP-LTISVQIMGETPPGASLLRSTARADDDIWVSGPLGDAALALAA--IQG 170 (319)
T ss_dssp -HHHHHHHHHHHHHHHHTTCEEEEEEEEESS-CEEEEEEEEEECTTCCCCSSCCCTTEEEEECSCCSHHHHHHHH--HTT
T ss_pred -HHHHHHHHHHHHHHHHcCCeEEeeEcCCCC-eEEEEEEEEeeCCCcccccCCCCCCCEEEEECCccHHHHHHHH--Hhc
Confidence 689999999999999999999999999987 9999999999998899999999999999999999999886444 221
Q ss_pred chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChH
Q psy4307 248 PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIA 327 (412)
Q Consensus 248 ~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~ 327 (412)
.. .++.+.+....++..++..++ .+...++. .+|||||||+ ||+++|+|||++|++|++|+.++||+.+
T Consensus 171 --~~-----~~~~~~~~~~~~~~~~p~~~~--~~~~~l~~-~v~a~~DiS~-GL~~~L~e~a~~s~vg~~i~~~~iP~~~ 239 (319)
T 3mcq_A 171 --RY-----PLSDTELAACGKALHQPQPRV--VLGQALRG-LAHSALDISD-GLLADLGHILEHSQVGAEVWLKAIPKSE 239 (319)
T ss_dssp --SS-----CCCHHHHHHHHHHHHCCCCCH--HHHHHTTT-TEEEEEECSS-CHHHHHHHHHHHHTCEEEEEGGGSCCCH
T ss_pred --CC-----CCChHHHHHHHHHHhCCCccH--HHHHHHhc-cCcEEEEccH-hHHHHHHHHHHHcCCcEEEeecccCCCH
Confidence 11 133443333333233332222 22334443 5999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeEEEeCC
Q psy4307 328 KMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVIEVPA 404 (412)
Q Consensus 328 ~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~~~~~~ 404 (412)
.++++|+.++.. +.+..+.+++ ||+++|+++++++++.+++. |+++++||+|+++++.+.+..+|+.++++.
T Consensus 240 ~~~~~~~~~~~~~~~l~~G~d~~----ll~~v~~~~~~~~~~~l~~~-g~~~~~IG~V~~~~~~~~~~~~g~~~~~~~ 312 (319)
T 3mcq_A 240 VVSAHSQEVAIQKMILSGGDDYE----LCFTASTQHRQQIADIGRQL-SLDMAVIGRITDTQQLVIHGLDDAPLTLKE 312 (319)
T ss_dssp HHHHTTTSHHHHHHHHHCSCCCC----EEEEEEGGGHHHHHHHHHHT-TCCCEEEEEEESSCCEEEECTTCCEEC---
T ss_pred HHHHHHhcCCHHHHHHcCCCcee----EEEEEcHHHHHHHHHHHHHc-CCCcEEEEEEEeCCceEEEcCCCCCccCCC
Confidence 999888765432 3344444444 99999999999999999997 999999999998766333345777766543
No 6
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=100.00 E-value=1.3e-50 Score=402.99 Aligned_cols=313 Identities=19% Similarity=0.183 Sum_probs=244.2
Q ss_pred eeeccCCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCC--CCCC
Q psy4307 47 LCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFY--PLVD 124 (412)
Q Consensus 47 lt~~~~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~--p~~~ 124 (412)
-|+|+|+ ||||+++++|++++.+... + ++ +++||||||++++ + .||+|||++. |...
T Consensus 7 ~~~~~~~--~ggk~~~~~i~~~~~~~~~------~---~~-------~~~GdDaav~~~~--~-~lv~ttD~~~~~p~~~ 65 (343)
T 2z1u_A 7 TLLLDYG--SGGRASHRLISDLFLRHFD------N---PI-------LGTLNDAARLDLT--G-PLAMSTDSYTVDPIFF 65 (343)
T ss_dssp CCCGGGG--TTSHHHHHHHHHTHHHHHC------C---HH-------HHTCSSSCCCCCC--S-SEEEEEEEECCSSSEE
T ss_pred eEEEecC--CCCcCcHHHHHHHHHhhcC------C---cC-------CCCCCceEEEECC--C-eEEEEeCCCCcCCeec
Confidence 3677774 5569999999998876432 1 22 4778999999996 5 7999999863 2233
Q ss_pred ChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC-----c
Q psy4307 125 DPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP-----W 199 (412)
Q Consensus 125 dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~-----~ 199 (412)
+++++||+|+++|+|||+||||+|+ +++++|++|++++. ++++++++|+.++|+++|++++||||+.+| .
T Consensus 66 ~~~~iG~~ava~~lsDlaamGA~P~-~~~~~l~~p~~~~~----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~~ 140 (343)
T 2z1u_A 66 PGGDIGTLAVHGTVNDVSMLGARPR-YLSCGFILEEGLDM----DILERVVASMGKAAREAGVFIVTGDTKVVPRGACDK 140 (343)
T ss_dssp TTEEHHHHHHHHHHHHHHTTTEEEE-EEEEEEEEETTCCH----HHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTSSSS
T ss_pred CCccHHHHHHHHHHHHHHHcCCeeH-HhheeeecCCCCCH----HHHHHHHHHHHHHHHHhCCEEECcEEEEcCCCCCCC
Confidence 4556799999999999999999999 68899999987776 689999999999999999999999999876 5
Q ss_pred eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHH
Q psy4307 200 CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNR 279 (412)
Q Consensus 200 ~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~ 279 (412)
+++++|++|.+++++++++++++|||.|++||++|.++.. +...+. + . .+++. + ...+..+++
T Consensus 141 ~~i~~t~vG~v~~~~~~~~~~a~~GD~I~vtg~~G~~g~~--~~~~~~-~-~-----~~~~~-~-------~~~~~~~~~ 203 (343)
T 2z1u_A 141 MFINTTGIGEILVDPAPSGDRARPGDAILISGSMGDHGLT--ILSQRQ-G-L-----NFAAD-V-------CSDSASLNR 203 (343)
T ss_dssp EEEEEEEEEEECCSSCCCGGGCCTTCEEEECSCSSHHHHH--HHHHTT-T-C-----CCCTT-C-------CCCCCCCHH
T ss_pred eEEEEEEEEEECCCccccccCCCCCCEEEEECCccHHHHH--HHHHhc-c-c-----CcchH-H-------HHhhhhHHH
Confidence 8999999999998888999999999999999999998553 322221 1 1 01110 0 001112332
Q ss_pred HHHHHHhh-cCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEE
Q psy4307 280 IAARLMHK-YNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICL 358 (412)
Q Consensus 280 ~~~~l~~~-~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v 358 (412)
....+++. ..+|+|||||+|||+++|+|||++|++|++|+.+++|+.+.+.++|+.++.+. +...++|+||+++
T Consensus 204 ~~~~~~~~~~~v~a~~Dis~GGL~~~L~e~a~~s~vg~~I~~~~iP~~~~~~~~~~~~~~~~-----~~~~~~G~ll~~v 278 (343)
T 2z1u_A 204 VVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRNGCSFLGLDP-----LYLANEGKLICIL 278 (343)
T ss_dssp HHHHHHHHTCCCCEEECCCTTHHHHHHHHHHHHHTSEEEEEGGGSCCCHHHHHHHHHTTCCT-----TSSCCSSCCEEEE
T ss_pred HHHHHHhccCCceEEEeCCCchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHhcCCCH-----HHHhccceEEEEE
Confidence 22333333 56999999999999999999999999999999999999999999999877542 2223688999999
Q ss_pred ccccHHHHHHHHHh--cCCCceeEEEEEEe------CC-ceEEEE-cCCeEEEeCCCCCC
Q psy4307 359 PREQAAAYCKDIEK--QEGYQAWIIGIVEK------GN-RTARII-DKPRVIEVPAKEKD 408 (412)
Q Consensus 359 ~~e~a~~~~~~l~~--~~g~~a~vIG~V~~------~~-~~v~i~-~~g~~~~~~~~~~~ 408 (412)
++++++++++.+++ . |+++++||+|++ +. +++++. ..|....+..|..+
T Consensus 279 ~~~~~~~~~~~l~~~~~-g~~~~~IG~v~~~~~~~~~~~~~v~~~~~~g~~~~l~~p~~d 337 (343)
T 2z1u_A 279 PEERAEAALAVLREGPH-GEHAARIGSVKSVGELGAARAGQVVMETALGGHRLLSMLEGE 337 (343)
T ss_dssp CHHHHHHHHHHHHTSTT-GGGCEEEEEEECTTSSSSCCTTCEEEECTTSSEEECCCCC--
T ss_pred CHHHHHHHHHHHhhccC-CCCeEEEEEEEecccccCCCCCeEEEEeCCCCEEECCCCCCC
Confidence 99999999999987 5 789999999988 44 456664 45556667776654
No 7
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=100.00 E-value=2.5e-49 Score=392.90 Aligned_cols=315 Identities=18% Similarity=0.202 Sum_probs=221.7
Q ss_pred CCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCCC--CCCCChhHH
Q psy4307 52 DLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFY--PLVDDPYMM 129 (412)
Q Consensus 52 ~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~~--p~~~dp~~~ 129 (412)
.+||||||+++++|++++.+...... .++ + .+++||||||++++ +..+++|||+|. |....++.+
T Consensus 7 ~~~g~ggk~~~~li~~~~~~~~~~~~---~~~-~-------~~~~gdDaav~~~~--~~~lv~ttD~~~~~~~~~~~~~i 73 (338)
T 2z1e_A 7 LEHGAGGEIMEELLRDVILKTLTLKS---AGG-I-------GLDALDDGATIPFG--DKHIVFTIDGHTVKPLFFPGGDI 73 (338)
T ss_dssp ----CCCC-------------------------------------CCSCEEEEET--TEEEEEEEEEECCSSSEETTEEH
T ss_pred EecCcCCccCHHHHHHHHHhhcCccc---Ccc-c-------CcCCCCceEEEEeC--CCEEEEEeCCCccCccccCCccH
Confidence 46789999999999999876322110 111 1 26889999999997 458999999863 111233457
Q ss_pred HHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC---ceeEeEEE
Q psy4307 130 GKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP---WCTIGGVA 206 (412)
Q Consensus 130 G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~---~~~i~~t~ 206 (412)
||+|+++|+|||+||||+|+ ++++++++|++++. ++++++++|+.++|+++|++++||||..+| .+.+++|+
T Consensus 74 G~~ava~~lsDl~a~Ga~P~-~~~~~l~~p~~~~~----~~l~~~~~Gi~~~~~~~g~~lvGGdt~~~~~~~~~~i~~t~ 148 (338)
T 2z1e_A 74 GRLAVSGTVNDLAVMGAEPI-ALANSMIIGEGLDM----EVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVITAG 148 (338)
T ss_dssp HHHHHHHHHHHHHTTTCEEE-EEEEEEEEETTCCH----HHHHHHHHHHHHHHHHTTCCEEEEEEEEESSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCchh-HhEEEEecCCCCCH----HHHHHHHHHHHHHHHHcCCEEECcEEEEcCCCCceEEEEEE
Confidence 99999999999999999999 68889999977776 799999999999999999999999999876 57899999
Q ss_pred EEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy4307 207 TTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMH 286 (412)
Q Consensus 207 iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~ 286 (412)
+|.+++. . ++++++|||.|++||++|.++.+... .+.. . .+++. +. ..+..+++....+++
T Consensus 149 ~G~v~~~-~-~~~~a~~GD~i~vtg~~G~~g~~~~~--~~~~--~-----~~~~~-~~-------~~~~~~~~~~~~l~~ 209 (338)
T 2z1e_A 149 IGIAEHP-V-SDAGAKVGDAVLVSGTIGDHGIALMS--HREG--I-----AFETE-LK-------SDVAPIWDVVKAVAE 209 (338)
T ss_dssp EEEESSC-C-CTTCCCTTCEEEESSCSSHHHHHHHH--HHTT--C-----CCSSC-CC-------CCCCCCHHHHHHHHH
T ss_pred EEEECCc-c-CccCCCCCCEEEEECCccHHHHHHHh--hhcc--C-----CCChh-HH-------HhhhhHHHHHHHHHH
Confidence 9999876 3 88999999999999999997653221 1110 0 01100 00 001112222223333
Q ss_pred -h-c-CceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccH
Q psy4307 287 -K-Y-NAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQA 363 (412)
Q Consensus 287 -~-~-~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a 363 (412)
. . .+++|||+|+|||+++|+|||++|++|++|+.+++|+.+.+.++|+.++.+ ++..+++|+||++++++++
T Consensus 210 ~~~~~~v~a~~Dis~GGL~~~l~ema~~s~~g~~I~~~~iP~~~~~~~~~~~~~~~-----~l~~~~~G~ll~~v~~~~~ 284 (338)
T 2z1e_A 210 TIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGIS-----PYDVANEGKVVMVVAREYA 284 (338)
T ss_dssp HHCGGGEEEEECCCTTHHHHHHHHHHHHHTCEEEEEGGGSCCCHHHHHHHHHHTCC-----GGGSCCSSCCEEEECGGGH
T ss_pred hcccCceEEEEeCCCChHHHHHHHHHHhcCCeEEEEcccCCCCHHHHHHHHHcCCC-----hhhccCCceEEEEECHHHH
Confidence 3 3 699999999999999999999999999999999999999999999887654 2334578899999999999
Q ss_pred HHHHHHHHhc-CCCceeEEEEEEeCC-ceEEEE-cCCeEEEeCCCCCC
Q psy4307 364 AAYCKDIEKQ-EGYQAWIIGIVEKGN-RTARII-DKPRVIEVPAKEKD 408 (412)
Q Consensus 364 ~~~~~~l~~~-~g~~a~vIG~V~~~~-~~v~i~-~~g~~~~~~~~~~~ 408 (412)
+++++.++++ .|+++++||+|++++ +.+++. ..+....+..|..+
T Consensus 285 ~~~~~~l~~~~~g~~~~~IG~v~~~~~~~v~i~~~~g~~~~~~~~~~~ 332 (338)
T 2z1e_A 285 EEALEAMRKTEKGRNAAIIGEVIADYRGKVLLETGIGGKRFMEPPEGD 332 (338)
T ss_dssp HHHHHHHHTSSTTTTCEEEEEEESSSTTCEEEECTTSCEEECCCSSCC
T ss_pred HHHHHHHHhccCCCCeEEEEEEEeCCCCeEEEEecCCCEEECCCCCCC
Confidence 9999999973 278999999999865 456665 34555556665544
No 8
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=100.00 E-value=2.5e-48 Score=382.03 Aligned_cols=281 Identities=19% Similarity=0.176 Sum_probs=224.6
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCC--CCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFF--YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVI 171 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~--~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l 171 (412)
+++|||||+++ ..+++|||+| -|.+.+|+++||+||++|+|||+||||+|+ ++++++++|++++. +++
T Consensus 17 l~~gdDaav~~-----~~l~~t~D~~v~~~~~~~~~~iG~~ava~~~sDiaamGA~P~-~~~~~l~~p~~~~~----~~l 86 (314)
T 3vti_C 17 IRAMEDAALLF-----GNITLTTDSFTVKPLFFPGGDIGKLAVCGTVNDASMRGAKPL-FLTAAFIIEEGFPV----EDL 86 (314)
T ss_dssp HHHTCSSEEET-----TTEEEEEEEECCSSSEETTEEHHHHHHHHHHHHTTTTTEEEE-EEEEEEEEETTCCH----HHH
T ss_pred cCCCCCeEEec-----CceEEEecCCccCCcccCccHHHHHHHHHHHHHHHHcCCccc-eeEEEEEcCCCCCH----HHH
Confidence 56789999998 2599999987 355668899999999999999999999999 68888999987776 799
Q ss_pred HHHHHHHHHHHHHcCCeEEcccccccC-----ceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhc
Q psy4307 172 PLMLRGFKDSALEAGTAVTGGQTVVNP-----WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLD 246 (412)
Q Consensus 172 ~~i~~Gi~~a~~~~gv~ivGG~T~~~~-----~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~ 246 (412)
+++++|+.++|+++|++++||||.++| .+++++|++|.+++++++++++++|||.|++||++|.++.+..+ .+
T Consensus 87 ~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~~~~i~~t~vG~v~~~~~~~~~~a~~GD~i~~tg~~G~~~~~~~~--~~ 164 (314)
T 3vti_C 87 KKIVKSMAEAAKEAGVKIVAGDTKVVEKGSVDRIFINTSGIGVLYEGANVSIKNAKPGDIVLISGTIGDHGMAVMS--AR 164 (314)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEEEECTTSBSSEEEEEEEEEEECTTCCCCTTCCCTTCEEEESSCSSHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHcCCeEEeeeeEEccCCCcCCeEEEEEEEEEECCCccccccCCCCCCEEEEECChHHHHHHHHH--hh
Confidence 999999999999999999999999876 47899999999998889999999999999999999998654222 22
Q ss_pred CchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhh-cCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCC
Q psy4307 247 QPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHK-YNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPV 325 (412)
Q Consensus 247 ~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~-~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv 325 (412)
....+ ...+.. .+..+++....+++. ..+|+|||+|+|||+++|+|||++|++|++|+.+++|+
T Consensus 165 ~~~~~---~~~~~~------------~~~~~~~~~~~l~~~~~~v~a~~DiS~GGL~~~L~e~a~~sgvg~~I~~~~iP~ 229 (314)
T 3vti_C 165 EELQF---DTPIFS------------DVAPLNGLIEKLMTLGEAIKVLRDPTRGGVAEVLYEISKMSGVGIKIYEEKLPV 229 (314)
T ss_dssp TTCCC---SSCCCC------------CCCCCHHHHHHHGGGGGGEEEEECCCTTHHHHHHHHHHHHHTCEEEEEGGGCCC
T ss_pred cCCCc---chhhHH------------hhccHHHHHHHHHhccCCcEEEEeCCCcHHHHHHHHHHHHcCCeEEEehhcCCC
Confidence 11010 001110 011122222334443 46999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHH--hcCCCceeEEEEEEeCCceEEEEc-CCeEEEe
Q psy4307 326 IAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIE--KQEGYQAWIIGIVEKGNRTARIID-KPRVIEV 402 (412)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~--~~~g~~a~vIG~V~~~~~~v~i~~-~g~~~~~ 402 (412)
.+.+.++|+.++.+ ++..+++|+||+++++++++++++.++ +. |+++++||+| ++++++++.. .|.+..+
T Consensus 230 ~~~~~~~~~~~~~~-----~l~~~~~g~ll~~v~~~~~~~~~~~l~~~~~-g~~~~~IG~v-~~~~~v~l~~~~g~~~~~ 302 (314)
T 3vti_C 230 KESVKSACEFMGID-----FLHLANEGKVVVVVERDYAEKALEIMKSHEY-GKDAEIIGEV-NDSKLVTINTIYGTSRIV 302 (314)
T ss_dssp CHHHHHHHHHHTCC-----GGGSCCSSCCEEEECGGGHHHHHHHHHTSTT-CTTCEEEEEE-ESSSCEEEECTTSCEEEC
T ss_pred CHHHHHHHHHhCCC-----HHHHHhCCcEEEEECHHHHHHHHHHHhhCcC-CCCeEEEEEE-CCCCeEEEEeCCCCEEEC
Confidence 99999999988764 223457899999999999999999999 55 8999999999 6666677763 4555556
Q ss_pred CCCCCC
Q psy4307 403 PAKEKD 408 (412)
Q Consensus 403 ~~~~~~ 408 (412)
..|..+
T Consensus 303 ~~p~~~ 308 (314)
T 3vti_C 303 DRPIGE 308 (314)
T ss_dssp CCC---
T ss_pred CCCCCc
Confidence 665443
No 9
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=100.00 E-value=8.1e-48 Score=381.45 Aligned_cols=302 Identities=19% Similarity=0.184 Sum_probs=236.7
Q ss_pred CHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCC---CceeEEEecCCC--CCCCChhHHHHHHHH
Q psy4307 61 PQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHG---GLSLVQTTDFFY--PLVDDPYMMGKIACS 135 (412)
Q Consensus 61 ~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~---~~~lv~ttD~~~--p~~~dp~~~G~~av~ 135 (412)
.+++..+++.+... + +.+++|||||++++++. +..+++|+|+|. |...+++++||+||+
T Consensus 13 ~~~~~~~~i~~~~~------~----------~~l~~gdDaavi~~~~~~~~~~~l~~t~D~~~~dp~~~~~~~iG~~ava 76 (334)
T 2rb9_A 13 MQQLINSLFMEAFA------N----------PWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAIC 76 (334)
T ss_dssp CHHHHHHHHHHHHC------C----------TTTTTCCSSEEEEHHHHHHHCSEEEEEEEEECCSSSEETTEEHHHHHHH
T ss_pred HHHHHHHHHHHhcC------c----------cccCCCCceEEEecCcccCCCceEEEEecCcccCCccCCcccHHHHHHH
Confidence 56777777776433 1 22688999999998520 247999999874 333344578999999
Q ss_pred HHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC-----ceeEeEEEEEEe
Q psy4307 136 NVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP-----WCTIGGVATTVC 210 (412)
Q Consensus 136 ~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~-----~~~i~~t~iG~~ 210 (412)
+|+|||+||||+|+ +++++|++|++++. ++++++++|+.++|+++|++++||||+.+| .+++++|++|.+
T Consensus 77 ~~lsDlaamGA~P~-~~~~~l~~p~~~~~----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~g~~~~~~i~~t~vG~v 151 (334)
T 2rb9_A 77 GTANDVAVSGAIPR-YLSCGFILEEGLPM----ETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAI 151 (334)
T ss_dssp HHHHHHHTTTCCCC-EEEEEEEEETTCCH----HHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSBSSEEEEEEEEEEE
T ss_pred HHHHHHHHCCCchH-HhEEEEecCCCCCH----HHHHHHHHHHHHHHHHcCCEEEeeEeEEccCCCCCceEEEEEEEEEE
Confidence 99999999999999 68899999977776 789999999999999999999999999865 588999999999
Q ss_pred cCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCc
Q psy4307 211 QPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNA 290 (412)
Q Consensus 211 ~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i 290 (412)
++++++++++++|||.|++||++|.++.. +.+.+. .. .+++. + ...+..+++....++++..+
T Consensus 152 ~~~~~~~~~~a~~GD~Iivtg~~G~~g~~--~~~~~~--~~-----~~~~~-~-------~~~~~~l~~~~~~l~~~~~v 214 (334)
T 2rb9_A 152 PTNIHWGAQTLTAGDILLVSGTLGDHGAT--ILNLRE--QL-----GLDGE-L-------VSDCAVLTPLIQTLRDIPGV 214 (334)
T ss_dssp CTTCCCCGGGCCTTCEEEESSCSSHHHHH--HHHHHH--TC-----SCTTT-C-------CCCCCCCHHHHHTTTTCTTE
T ss_pred CcccccccccCCCCCEEEEECCchHHHHH--HHHhhc--cC-----CCChH-H-------HHhhhhhHHHHHHHHhcCCe
Confidence 98888999999999999999999998553 322211 00 01110 0 00112233333344455579
Q ss_pred eEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHH
Q psy4307 291 HGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKD 369 (412)
Q Consensus 291 ~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~ 369 (412)
++|||||+|||+++|+|||++|++|++|+.+++|+.+.++++|+.++.+ +.+ .++|+||+++++++++++++.
T Consensus 215 ~a~~Dis~GGL~~~l~ema~~s~vg~~i~~~~iP~~~~~~~~~~~~~~~~~~~------~~~G~ll~~v~~~~~~~~~~~ 288 (334)
T 2rb9_A 215 KALRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNF------ANEGKLVIAVERNAAEQVLAA 288 (334)
T ss_dssp EEEEECCTTHHHHHHHHHHHHHTCEEEEETTTCCCCHHHHHHHHHHCCCTTTS------CCSSCEEEEECGGGHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHcCCCHHHH------hhcCeEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987764 233 267889999999999999999
Q ss_pred HHh--cCCCceeEEEEEEeCCceEEEE-cCCeEEEeCCCCCC
Q psy4307 370 IEK--QEGYQAWIIGIVEKGNRTARII-DKPRVIEVPAKEKD 408 (412)
Q Consensus 370 l~~--~~g~~a~vIG~V~~~~~~v~i~-~~g~~~~~~~~~~~ 408 (412)
+++ . |+++++||+|+++++ +++. .+|+...+..|..+
T Consensus 289 l~~~~~-g~~~~~IG~v~~~~~-v~~~~~~g~~~~l~~p~~d 328 (334)
T 2rb9_A 289 LHSHPL-GKDAALIGEVVERKG-VRLAGLYGVKRTLDLPHAE 328 (334)
T ss_dssp HHTSGG-GTTCEEEEEEESSCS-EEEECGGGCEEECCCCSSC
T ss_pred HhhcCC-CCCEEEEEEEEeCCc-EEEEecCCCEEECCCCCCc
Confidence 987 5 889999999998765 5665 35555566666654
No 10
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=100.00 E-value=4.7e-45 Score=363.53 Aligned_cols=285 Identities=16% Similarity=0.202 Sum_probs=217.3
Q ss_pred CCCCCCeeEEecCC-----CCceeEEEecCCCC------CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCC
Q psy4307 94 IGIGMDSAVIPLRH-----GGLSLVQTTDFFYP------LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKM 162 (412)
Q Consensus 94 ~~~GdDaavi~~~~-----~~~~lv~ttD~~~p------~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~ 162 (412)
.++|||||+++++. .+..|++|||+... ..+.++.+||+||++|+|||+||||+|+ ++++++++| ++
T Consensus 40 ~giGddaav~~~~~~~~~~~~~~lv~stD~~~~k~~~a~~~~~~~~iG~~ava~~vsDiaamGA~P~-~~l~~l~~~-~~ 117 (350)
T 3m84_A 40 TGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPI-TFLDYVAHD-KL 117 (350)
T ss_dssp CCCGGGCCEEECHHHHHHCSSEEEEEEEECCTTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCEEE-EEEEEEEES-SC
T ss_pred cCCCCceEEEecCcccccCCCceEEEEcCcCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHhcCC-CC
Confidence 57899999999861 13569999997521 1234589999999999999999999999 578888765 56
Q ss_pred ChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChH
Q psy4307 163 TEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQ 236 (412)
Q Consensus 163 ~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~ 236 (412)
++ ++++++++|+.++|+++|++|+||||.++|+ ..+++|++|.+++++++++++++|||.|++||++|.+
T Consensus 118 ~~----~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~p~~~~~~~~~l~gt~vG~v~~~~~l~~~~a~~GD~Ii~tg~~G~~ 193 (350)
T 3m84_A 118 DP----AIMEELVKGMSKACAECGVSLVGGETAEMPGVYQAGEIDMVGVITGIVDRKRIINGENIKEGDIVFGLSSSGLH 193 (350)
T ss_dssp CH----HHHHHHHHHHHHHHHHTTCEEEEEEEEECTTTBCTTCEEEEEEEEEEEEGGGCCCSTTCCTTCEEEEEECSSST
T ss_pred CH----HHHHHHHHHHHHHHHHhCCeEEeeeeeEcCCcccCCcccEEEEEEEEEeCCcccccccCCCCCEEEEecCchHH
Confidence 66 6899999999999999999999999999884 4578889999999899999999999999999999987
Q ss_pred HHHHHH--HhhcCchhhhhhcccCCH---HHHHHHHHHHHHhhhhhHHHHHHHHh-hcCceEEecCCCChHHHHHHhHHH
Q psy4307 237 VAVNAH--QWLDQPERWNRIKLIVSE---DDVRKAYQRSMDSMARLNRIAARLMH-KYNAHGATDVTGFGLLGHAQTLAK 310 (412)
Q Consensus 237 ~~~~a~--~~l~~~~~~~~l~~~l~~---~~l~~a~~~~~~~~~~l~~~~~~l~~-~~~i~a~~DiT~GGL~~~L~ema~ 310 (412)
..+..+ +.+..+..+. +...+++ ..+ .+..+.+...+.+....+++ +..+|+|||||+|||+++|+|||
T Consensus 194 ~~g~~l~r~~~~~~~~~~-~~~~~~~~~~~~l---~~~ll~p~r~~~~~~~~l~~~~~~v~a~~DiTggGL~~~L~ei~- 268 (350)
T 3m84_A 194 TNGYSFARKLFFDVAGNK-HTDTYPELEGKTI---GDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIENIPRVL- 268 (350)
T ss_dssp TSSHHHHHHHHHTTSCCC-TTCCCGGGTTCCH---HHHHTCCCCCCHHHHHHHHHTTCCCCEEEECCTTHHHHHHHHHS-
T ss_pred HHHHHHHHHHhhhhhcCC-ccccccccchhHH---HHHHhhhhhhhHHHHHHHHhccCCeeEEEeCCCccHHHHHHHHh-
Confidence 542211 1110100000 0111111 111 12223333222334445666 67899999999999999999999
Q ss_pred hCCCeEEEEccCCCChHHHHHHHHHcCChh-hhccCCcccccceEEEEEccccHHHHHHHHHhcCCC-ceeEEEEEEeCC
Q psy4307 311 HQKNEVSFVIHNLPVIAKMAAVAKACGNMF-QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGY-QAWIIGIVEKGN 388 (412)
Q Consensus 311 ~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~-~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~-~a~vIG~V~~~~ 388 (412)
+|++|++|+.+++|+++.++++|+.++.+. .++..| ..++|||+++|+++++++++.++++ |+ ++++||+|+++.
T Consensus 269 ~sgvg~~I~~~~iP~~~~~~~~~~~~~~~~~e~~~~~--~~g~gll~~v~~~~~~~~~~~l~~~-g~~~a~~IG~V~~~~ 345 (350)
T 3m84_A 269 PQGLGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSF--NMGIGMTIIASQDQFDKMQELAKKH-TNTKLYQIGKITNSG 345 (350)
T ss_dssp CTTCEEEECGGGSCCCHHHHHHHHHHTCCHHHHHHHC--CTTEEEEEEECGGGHHHHHHHHTTC-TTSCEEEEEEEESSS
T ss_pred hhCceEEEEcccCCCcHHHHHHHHhcCCCHHHHHHHH--hCCCCEEEEECHHHHHHHHHHHHhc-CCCCeEEEEEEEeCC
Confidence 899999999999999999999999887652 222112 2355799999999999999999987 89 999999999865
Q ss_pred ceEEE
Q psy4307 389 RTARI 393 (412)
Q Consensus 389 ~~v~i 393 (412)
.+++
T Consensus 346 -~v~~ 349 (350)
T 3m84_A 346 -KVEI 349 (350)
T ss_dssp -SEEE
T ss_pred -cEEE
Confidence 3554
No 11
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-44 Score=354.43 Aligned_cols=269 Identities=19% Similarity=0.164 Sum_probs=214.2
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCCC-----CCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHh
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFFY-----PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERD 168 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~~-----p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~ 168 (412)
+++||||||++++ +..+++|||++. +.+.+||.+||+||++|+|||+||||+|+ ++++++++|++.+.
T Consensus 26 ~g~gdDaavi~~~--~~~lv~ttD~~~~~~~f~~~~~p~~~G~~ava~~lsDlaa~Ga~P~-~~~~~~~~p~~~~~---- 98 (311)
T 2yxz_A 26 LPPGDDAGGVWAE--GRAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPL-GFTLGLFLPEDLEE---- 98 (311)
T ss_dssp SCTTSSSEEEEET--TEEEEEEEEEEEHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTEEEE-EEEEEEEECTTCBH----
T ss_pred cCCCCCEEEEecC--CCeEEEEeCcCCCccccCCCCCHHHHHHHHHHHHHHHHHHcCChhh-hheeeEeCCCCCCH----
Confidence 5789999999994 568999999963 35789999999999999999999999999 68888999977655
Q ss_pred hHHHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEec-ccChHHHHHHHHhhcC
Q psy4307 169 VVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTK-PLGTQVAVNAHQWLDQ 247 (412)
Q Consensus 169 ~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg-~lG~~~~~~a~~~l~~ 247 (412)
++++++++|+.++|+++|++|+||||+.++.+++++| |.+++.+.++ ++++|||.|++|| ++|.++.+..+ ++.
T Consensus 99 ~~l~~~~~Gi~~~~~~~g~~lvGG~t~~~~~~~i~~t--G~v~~~~~~~-~~a~~GD~i~~~g~~~G~~~~~~~~--~~~ 173 (311)
T 2yxz_A 99 GFVLELVRGAAEAAKRLGAFLLGGDTNRGVEVALTVS--GYALAEAPLP-RKALPGDLLYLAGDRWGRTGAAIRA--HYE 173 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSCEEEEE--EEEEESSCCC-SCCCTTCEEEEESSCTTHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEceecCCCCCcEEEEE--eeeCCCCccc-cCCCCCCEEEEeCCCcchHHHHHHH--Hhc
Confidence 7899999999999999999999999999888887777 9998777888 8899999999999 99998765322 211
Q ss_pred chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChH
Q psy4307 248 PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIA 327 (412)
Q Consensus 248 ~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~ 327 (412)
. . .....+.. .+....+..++. .++++..+++|||+|+ ||+++|+|||. |++|++|+ ++|+.+
T Consensus 174 ~--~---~~~~~~~~----~~~~~~p~~~~~----~~l~~~~v~a~~DiSd-GL~~~l~ema~-s~~g~~i~--~ip~~~ 236 (311)
T 2yxz_A 174 G--R---SLEGFPKI----REAAFYPLPRLE----LLALSGLLRGSLDSSD-GLAETLWQLAD-LGVGVEVE--ALPLYP 236 (311)
T ss_dssp T--C---CCTTCHHH----HHHHHCCCCCGG----GGGGTTTCSEEEEESS-CHHHHHHHHHT-TTCEEEEC--CCCCCH
T ss_pred C--C---CcchhHHH----HHHHhCchhhHH----HHHHhcCCEEEEeChH-HHHHHHHHHHH-cCCcEEEE--eccCCH
Confidence 0 0 00111211 122223333332 3455666899999999 99999999999 99999998 899999
Q ss_pred HHHHHHHHcCChhh--hccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE
Q psy4307 328 KMAAVAKACGNMFQ--LLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 328 ~~~~~~~~~~~~~~--l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~ 399 (412)
.+.++|+.++..+. |+ .++.++||+++++++++++++.+++. |+++++||+|+++++ +++ +|+.
T Consensus 237 ~~~~~~~~~~~~~~~~l~----~g~~~~ll~~v~~~~~~~~~~~l~~~-g~~~~~IG~v~~~~~-v~i--~g~~ 302 (311)
T 2yxz_A 237 DVLAFAGSEEAALELVLY----GGEEFEAVLVVPQEGAAAVEARAKAK-GLPLFRAGRVVAGEG-VYL--RGAP 302 (311)
T ss_dssp HHHHHHSSHHHHHHHHHS----CCCCCEEEEEECSTTHHHHHHHHHHT-TCCEEEEEEEESSSC-EEE--TTEE
T ss_pred HHHHHHHccCCHHHHHhh----cCCCeEEEEEECHHHHHHHHHHHHhc-CCCeEEEEEEEcCCc-eEE--CCcC
Confidence 99988876542233 33 23455699999999999999999987 899999999998654 555 6665
No 12
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=100.00 E-value=2.3e-44 Score=358.37 Aligned_cols=278 Identities=19% Similarity=0.243 Sum_probs=210.2
Q ss_pred CCCCCCeeEEecCCC--CceeEEEecCCC---CC---CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChh
Q psy4307 94 IGIGMDSAVIPLRHG--GLSLVQTTDFFY---PL---VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEK 165 (412)
Q Consensus 94 ~~~GdDaavi~~~~~--~~~lv~ttD~~~---p~---~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~ 165 (412)
.++|||||+++++++ +..|++|||+.. .+ .++|+++||+||++|+|||+||||+|+ ++++++++| +.++
T Consensus 44 ~giGddaav~~~~~~~~~~~lv~~tD~~g~~~~~a~~~~~~~~iG~~aVa~~vsDiaamGA~P~-~~l~~l~~~-~~~~- 120 (349)
T 3p4e_A 44 GGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAEPL-FFLDYYATG-KLDV- 120 (349)
T ss_dssp C------CEECCCTTCSSEEEEEEEECCTHHHHHHHHTTCCSSHHHHHHHHHHHHHHTTTCEEE-EEEEEEEES-SCCH-
T ss_pred ccCCCCeEEEEccccCCCceEEEEcCCCCcchhHHHhcCCHHHHHHHHHHHHHHHHHHcCCcHH-HHHHhhcCC-CCCH-
Confidence 578999999998741 236999999852 11 256779999999999999999999999 677877665 5666
Q ss_pred hHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHH
Q psy4307 166 ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAV 239 (412)
Q Consensus 166 e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~ 239 (412)
++++++++|+.++|+++|++|+||||.++|+ ..+++|++|.+++++++++++++|||.|++||++|.+..+
T Consensus 121 ---~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~~~~~~~l~gt~vG~v~~~~~~~~~~a~~GD~Ii~tg~~G~~~~g 197 (349)
T 3p4e_A 121 ---DTAAEVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDALIAVGSSGPHSNG 197 (349)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCEEEEEEEEECBTTBCTTCEEEEEEEEEEEEGGGCCCSTTCCTTCEEEEEECSSSTTSS
T ss_pred ---HHHHHHHHHHHHHHHHcCCEEEcceeEECCCcccCCcccEEEEEEEEEcCcccccCCCCCCCCEEEEcCCcchhhhH
Confidence 6899999999999999999999999999885 3467789999998899999999999999999999987542
Q ss_pred HHHHhhcC---chhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeE
Q psy4307 240 NAHQWLDQ---PERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEV 316 (412)
Q Consensus 240 ~a~~~l~~---~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~ 316 (412)
+.+++. ...+. +...+....+. +..+.+.....+.+..++++..+|+|||||+|||+++|+||+ +|++|+
T Consensus 198 --~~l~~~~~~~~~~~-~~~~~~~~~l~---~~ll~p~r~~~~~~~~l~~~~~v~a~~DiTggGL~~~L~e~a-~sgvg~ 270 (349)
T 3p4e_A 198 --YSLVRKILEVSKAD-KNERLAGKTIG---EHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGFWENIPRVL-PEGTKA 270 (349)
T ss_dssp --HHHHHHHHHHHTCC-TTCEETTEEHH---HHHHCCCCCCHHHHHHHHHHSCCCEEEECCTTHHHHHGGGGC-CTTEEE
T ss_pred --HHHHHHHHhhccCC-cccccchhHHH---HHHhhhhHHhHHHHHHHHhcCCceEEEeCCcchHHHHHHHHh-hhCceE
Confidence 222211 00000 00011111121 122233222234445667777899999999999999999999 799999
Q ss_pred EEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeC
Q psy4307 317 SFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKG 387 (412)
Q Consensus 317 ~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~ 387 (412)
+|+.+++|+.+.+.++|+.++.+ +.++..| .+++|||++||+++++++++.+++. |+++++||+|+++
T Consensus 271 ~Id~~~iP~~~~~~~~~~~~~~~~~e~~~~~--~~g~gll~~v~~~~~~~~~~~l~~~-g~~a~vIG~V~~~ 339 (349)
T 3p4e_A 271 VIDGKSWEWPVIFQWLQEKGNVTTHEMYRTF--NCGVGLIIALPKDQANAAVALLQAE-GETAWVIGEIAAA 339 (349)
T ss_dssp EECTTSCCCCHHHHHHHHHHTCCHHHHHTTS--CTTEEEEEEECHHHHHHHHHHHHHT-TCCEEEEEEEEEC
T ss_pred EEeccCCCCCHHHHHHHHhcCCCHHHHHHhc--CCCCcEEEEEcHHHHHHHHHHHHhc-CCCeEEEEEEecc
Confidence 99999999999999999988765 4544333 2456799999999999999999997 9999999999975
No 13
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=100.00 E-value=6e-44 Score=355.64 Aligned_cols=284 Identities=19% Similarity=0.251 Sum_probs=209.0
Q ss_pred CCCCCCeeEEecCC---CCceeEEEecCCC------CCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCCh
Q psy4307 94 IGIGMDSAVIPLRH---GGLSLVQTTDFFY------PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTE 164 (412)
Q Consensus 94 ~~~GdDaavi~~~~---~~~~lv~ttD~~~------p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~ 164 (412)
.++|||||+++++. .+..||+|||++. +.+.+|+++||+||++|+|||+||||+|+ ++++++++| +.++
T Consensus 38 ~g~GdD~av~~~~~~~~~~~~lv~stD~~~~~~~~~~~~~~~~~iG~~ava~~vsDlaa~Ga~P~-~~~~~l~~~-~~~~ 115 (348)
T 2z01_A 38 GGIGGFGGLFDLSALGYRQPVLISGTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPL-FFLDYIACG-KAVP 115 (348)
T ss_dssp CC-----CEECGGGGCCSSEEEEEEEEECCTHHHHHHHHTCCSSHHHHHHHHHHHHHHTTTCEEE-EEEEEEEES-SCCH
T ss_pred eccCCccEEEecCcccCCCcceeeecccccchHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCChH-HHHHHhcCC-CCCH
Confidence 68899999999862 1245999999852 23568999999999999999999999999 688889887 4565
Q ss_pred hhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHH
Q psy4307 165 KERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVA 238 (412)
Q Consensus 165 ~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~ 238 (412)
++++++++|+.++|+++|++|+||||..+|+ ..+++|++|.+++++++++++++|||.|+++|++|.+..
T Consensus 116 ----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~l~~~~a~~GD~ii~~g~~G~~~~ 191 (348)
T 2z01_A 116 ----EKIAAIVKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALVGLPSSGLHSN 191 (348)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCEEEECCEEC--------CEEEEEEEEEEEEGGGCCCSTTCCTTCEEEEEECSSSTTS
T ss_pred ----HHHHHHHHHHHHHHHHcCCEEECceeeecCCcccCCCeeEEEEEEEEEccccccCccCCCCCCEEEEECCchHHHh
Confidence 5899999999999999999999999998763 578899999999888999999999999999999998754
Q ss_pred HHHHHhhcCc-hh-hh-hhcccC-C-HHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCC
Q psy4307 239 VNAHQWLDQP-ER-WN-RIKLIV-S-EDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQK 313 (412)
Q Consensus 239 ~~a~~~l~~~-~~-~~-~l~~~l-~-~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~ 313 (412)
+ +.+++.. .. .. .....+ + ...+ .+..+++...+.+....++++..+|+|||||+|||+++|+||+ +|+
T Consensus 192 g--~~l~~~~~~~~~~~~~~~~~~~~~~~l---~~~~l~p~~~~~~~~~~l~~~~~v~a~~DiSdGGL~~~L~em~-~s~ 265 (348)
T 2z01_A 192 G--YSLVRRIVFEQAKLSLDEIYEPLDVPL---GEELLKPTRIYAKLLRSVRERFTIKGMAHITGGGLIENIPRML-PPG 265 (348)
T ss_dssp C--HHHHHHHHHTTSCCCTTSCCTTCSSCH---HHHHHCCCCCCHHHHHHHHHHSCCCEEEECCTTHHHHHHHHHS-CTT
T ss_pred H--HHHHHHHHhhhccCCcccccccccchH---HHHHhhHHHHHHHHHHHHHhcCCceEEEeCCCCcHHHHHHHHh-ccC
Confidence 2 2222210 00 00 000011 0 0111 1112222222222223445666799999999999999999999 799
Q ss_pred CeEEEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEE
Q psy4307 314 NEVSFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTAR 392 (412)
Q Consensus 314 ~g~~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~ 392 (412)
+|++|+.+++|+.+.+.++|+.++.+ +.+..-| ..+++||+++++++++++++.++++ |+++++||+|++++ +++
T Consensus 266 vg~~I~~~~ip~~~~~~~~~~~~~~~~~~~~~~~--~~g~gll~~v~~~~~~~~~~~l~~~-g~~~~~IG~V~~~~-~v~ 341 (348)
T 2z01_A 266 IGARIQLGSWPILPIFDFLREKGSLEEEEMFSVF--NMGIGLVLAVSPETAAPLVEWLSER-GEPAYIIGEVAKGA-GVS 341 (348)
T ss_dssp EEEEEETTSSCCCHHHHHHHHHTTCCHHHHHHHS--CTTEEEEEEECHHHHHHHHHHHHHT-TCCCEEEEEEEESS-EEE
T ss_pred ceEEEeccCCCCCHHHHHHHHcCCCCHHHHHHHh--CCCCeEEEEEcHHHHHHHHHHHHhc-CCCeEEEEEEecCC-eEE
Confidence 99999999999999999999987765 2221111 1244799999999999999999997 89999999999865 454
Q ss_pred E
Q psy4307 393 I 393 (412)
Q Consensus 393 i 393 (412)
+
T Consensus 342 ~ 342 (348)
T 2z01_A 342 F 342 (348)
T ss_dssp E
T ss_pred E
Confidence 4
No 14
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=100.00 E-value=1.6e-43 Score=351.29 Aligned_cols=264 Identities=22% Similarity=0.249 Sum_probs=207.7
Q ss_pred CCCeeEEecCCCCceeEEEecC------CCCCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhH
Q psy4307 97 GMDSAVIPLRHGGLSLVQTTDF------FYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVV 170 (412)
Q Consensus 97 GdDaavi~~~~~~~~lv~ttD~------~~p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~ 170 (412)
||||||++++ +..||+|||+ |+|. .+||++||+||++|+|||+||||+|+ +++++|++|++++. ++
T Consensus 61 GdDaAvi~~~--~~~lv~ttD~~~~~~~f~~~-~~p~~iG~~ava~~vsDlaamGA~P~-~~l~~l~~p~~~~~----~~ 132 (342)
T 3c9u_A 61 GDDTAPVEYC--SKKLLLTTDVLNEGVHFLRS-YIPEAVGWKAISVNVSDVIANGGLPK-WALISLNLPEDLEV----SY 132 (342)
T ss_dssp TSSSEEEEET--TEEEEEEEEEEEBTTTBCTT-SCHHHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEECTTSBH----HH
T ss_pred CCceEEEecC--CCeEEEEeCccCCCcccCCC-CCHHHHHHHHHHHHHHHHHHCCCchH-HhEEEEecCCCCCH----HH
Confidence 8999999995 4689999998 3344 55999999999999999999999999 68999999977765 78
Q ss_pred HHHHHHHHHHHHHHcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhhcCchh
Q psy4307 171 IPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPER 250 (412)
Q Consensus 171 l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l~~~~~ 250 (412)
++++++||.++|+++|++|+||||+.++++++++|++|. +++++++++++|||.|++||++|.+..+..+ +.. +.
T Consensus 133 l~~i~~Gi~~~~~~~gv~lvGGdT~~~~~~~i~vt~vG~--~~~~l~~~~a~~GD~IivtG~~G~~~~g~~~--l~~-~~ 207 (342)
T 3c9u_A 133 VERFYIGVKRACEFYKCEVVGGNISKSEKIGISVFLVGE--TERFVGRDGARLGDSVFVSGTLGDSRAGLEL--LLM-EK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEEECSSCEEEEEEEEE--ESSCCCSSCCCTTCEEEEESCSSHHHHHHHH--HHT-TC
T ss_pred HHHHHHHHHHHHHHcCCeEEeeEeeecCCeEEEEEEEEe--cCccccccCCCCCCEEEEECchhHHHHHHHH--Hhc-CC
Confidence 999999999999999999999999999889999999998 4678999999999999999999998764333 322 11
Q ss_pred hhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHH
Q psy4307 251 WNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMA 330 (412)
Q Consensus 251 ~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~ 330 (412)
. ... .......++..+++.++.. ..++++ .+++|+|||+ ||+++|+|||++|++|++|+.++||+.+.+.
T Consensus 208 ~-----~~~-~~~~~~~~~~~~p~~~~~~--~~~~~~-~v~a~~DiSd-GL~~~L~eia~~sgvg~~Id~~~iP~~~~~~ 277 (342)
T 3c9u_A 208 E-----EYE-PFELALIQRHLRPTARIDY--VKHIQK-YANASMDISD-GLVADANHLAQRSGVKIEILSEKLPLSNELK 277 (342)
T ss_dssp S-----CCC-HHHHHHHHHHHSCCCCGGG--HHHHHH-HCSEEEEESS-CHHHHHHHHHHHHTCEEEECGGGSCCCHHHH
T ss_pred c-----ccc-cccHHHHHHHhCchhhHHH--HHHhhc-cCeEEEECCc-hHHHHHHHHHHHhCCeEEEehhcCCCCHHHH
Confidence 0 011 1111222333445544432 222333 3899999999 9999999999999999999999999999999
Q ss_pred HHHHHcCCh-hh--hccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE
Q psy4307 331 AVAKACGNM-FQ--LLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 331 ~~~~~~~~~-~~--l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~ 399 (412)
++|+.++.+ +. +.+|+|+ +||+++|+++++++ . .+++||+|+++++ +..+|+.
T Consensus 278 ~~~~~~~~~~~~~~~~GGEd~----~ll~~v~~~~~~~l--------~-~~~~IG~V~~~~~---v~~~g~~ 333 (342)
T 3c9u_A 278 MYCEKYGKNPIEYALFGGEDY----QLLFTHPKERWNPF--------L-DMTEIGRVEEGEG---VFVDGKK 333 (342)
T ss_dssp HHHHHTTCCHHHHHHHCCCCC----EEEEEECGGGCCTT--------S-CEEEEEEEESSSS---EEETTEE
T ss_pred HHHHHcCCCHHHHHhcCCCce----EEEEEECHHHHhhc--------C-CCEEEEEEEcCCC---EeeCcCC
Confidence 999988765 33 3344554 59999999874321 1 2899999998665 4456664
No 15
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=100.00 E-value=3.7e-43 Score=349.63 Aligned_cols=284 Identities=17% Similarity=0.200 Sum_probs=214.1
Q ss_pred CCCCCCeeEEecCC---CCceeEEEecCCC------CCCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCCh
Q psy4307 94 IGIGMDSAVIPLRH---GGLSLVQTTDFFY------PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTE 164 (412)
Q Consensus 94 ~~~GdDaavi~~~~---~~~~lv~ttD~~~------p~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~ 164 (412)
.++|||||+++++. .+..|+++||++. +.+.+|+++||+||++|+|||+||||+|+ ++++++++| +.++
T Consensus 36 ~giGdd~a~~~~~~~~~~~~~lv~~tD~~~~~~~~~~~~~~~~~iG~~ava~~vsDi~a~Ga~P~-~~l~~l~~~-~~~~ 113 (346)
T 2btu_A 36 GGLGGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPL-FFLDYIACG-KAEP 113 (346)
T ss_dssp CC---CCCEEECTTCCCSSEEEEEEEEECCTTHHHHHHHCCCSSHHHHHHHHHHHHHHTTTCEEE-EEEEEEEES-SCCH
T ss_pred ccccceEEEEecCccCCCCceEEEecccCCchHHHHHHhcCcchHHHHHHHHHHHHHHHcCCChH-HHHHHHhcC-CCCH
Confidence 58899999999852 0357999999852 23568999999999999999999999999 688889887 4555
Q ss_pred hhHhhHHHHHHHHHHHHHHHcCCeEEcccccccCc------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHH
Q psy4307 165 KERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPW------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVA 238 (412)
Q Consensus 165 ~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~~------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~ 238 (412)
++++++++|+.++|+++|++|+||||..+|+ ..+++|++|.+++++++++++++|||.|+++|++|.+..
T Consensus 114 ----~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~~~a~~GD~ii~~g~~G~~~~ 189 (346)
T 2btu_A 114 ----SKIENIVKGISEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLASSGIHSN 189 (346)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCEEEEEEEEECSTTSCSSCEEEEEEEEEEEETTSCCCSTTCCTTCEEEEEECSSSTTS
T ss_pred ----HHHHHHHHHHHHHHHHhCCeEeeeEEEEcCCcccCCCccEEEEEEEEEccccccCccCCCCCCEEEEECCchhhhh
Confidence 5899999999999999999999999998864 578899999999889999999999999999999998754
Q ss_pred HHHHHhhcCc-hhhh--hhcccCC--HHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCC
Q psy4307 239 VNAHQWLDQP-ERWN--RIKLIVS--EDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQK 313 (412)
Q Consensus 239 ~~a~~~l~~~-~~~~--~l~~~l~--~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~ 313 (412)
+ +.+++.. .+.. .....+. ...+ .+..+++..++......++++..+|+|||||+|||+++|+||+ +++
T Consensus 190 g--~~l~~~~~~~~g~~~~~~~~~~~~~~l---~~~~l~p~~~~~~~~~~ll~~~~v~a~~DiS~GGL~~~L~ema-~s~ 263 (346)
T 2btu_A 190 G--YSLVRKVLLEDGELSLDRIYGRLELPL---GEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIENIPRML-PEG 263 (346)
T ss_dssp C--HHHHHHHHHSSCCC----CCSSSCSCH---HHHHTCCCCCCHHHHHHHHHHSCCCCCEECCTTHHHHHTGGGC-CTT
T ss_pred H--HHHHHHHHhhccccccCccchhhhhHH---HHHHhhHHHHHHHHHHHHHHhCCceEEEeCCCChHHHHHHHHH-hCC
Confidence 2 2222110 0000 0000010 0011 1112223222222223455666799999999999999999999 899
Q ss_pred CeEEEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEE
Q psy4307 314 NEVSFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTAR 392 (412)
Q Consensus 314 ~g~~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~ 392 (412)
+|++|+.+++|+.+.+.++|+.++.+ +.++..| ..+++||+++++++++++++.++++ |+++++||+|++++ +++
T Consensus 264 vg~~I~~~~ip~~~~~~~~~~~~~~~~~~~~~~~--~~g~gll~~v~~~~~~~~~~~l~~~-g~~~~~IG~V~~~~-~v~ 339 (346)
T 2btu_A 264 IGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIF--NMGIGMVVAVKEEDAKDIVRLLEEQ-GETARIIGRTVQGA-GVT 339 (346)
T ss_dssp EEEEECTTSSCCCHHHHHHHHHHTCCHHHHTTTC--CTTEEEEEEECTTTHHHHHHHHHHH-TCCEEEEEEEEESS-SEE
T ss_pred eeEEEeecCCCCCHHHHHHHHhcCCCHHHHHHHh--CCcCcEEEEEcHHHHHHHHHHHHhC-CCCeEEEEEEecCC-eEE
Confidence 99999999999999999999988765 3332222 2345799999999999999999997 89999999999865 444
Q ss_pred E
Q psy4307 393 I 393 (412)
Q Consensus 393 i 393 (412)
+
T Consensus 340 ~ 340 (346)
T 2btu_A 340 F 340 (346)
T ss_dssp E
T ss_pred E
Confidence 3
No 16
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.3e-42 Score=339.11 Aligned_cols=286 Identities=15% Similarity=0.202 Sum_probs=210.0
Q ss_pred CCCCCCeeEEecCC---CCceeEEEecCCC-----C-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCCh
Q psy4307 94 IGIGMDSAVIPLRH---GGLSLVQTTDFFY-----P-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTE 164 (412)
Q Consensus 94 ~~~GdDaavi~~~~---~~~~lv~ttD~~~-----p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~ 164 (412)
...|-.+++++++. .+..++.++|+.. . .++.++++||+||++|+|||+||||+|+ +++++|++| +.++
T Consensus 8 ~~~g~f~~~~~~~~~~~~~~~l~~~~D~~v~~~~~a~~~d~~~~iG~~ava~~vsDiaamGA~P~-~~l~~l~~~-~~~~ 85 (334)
T 2v9y_A 8 VDLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPL-FFLDYFSCG-KLDL 85 (334)
T ss_dssp -------CCCCTTTTTCSSEEEEEEEECCTTHHHHHHHHTCCTTHHHHHHHHHHHHHHTTTCEEE-EEEEEEEES-SCCH
T ss_pred ccCcccceeeecccccCCCceEEeecCcCCcchhhheecCCHHHHHHHHHHHHHHHHHHCCCcHH-HHHHHhcCC-CCCH
Confidence 34556777777642 1457899999842 2 2455899999999999999999999999 678888765 4665
Q ss_pred hhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC------ceeEeEEEEEEecCCccccC-CCCCCCCEEEEecccChHH
Q psy4307 165 KERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP------WCTIGGVATTVCQPNEYIVP-DNAVVGDVLVLTKPLGTQV 237 (412)
Q Consensus 165 ~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~------~~~i~~t~iG~~~~~~~~~~-~~a~~GD~Iiltg~lG~~~ 237 (412)
++++++++|+.++|+++|++|+||||+.+| ++.+++|++|.+++++++++ ++++|||.|++||++|.+.
T Consensus 86 ----~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~~~~a~~GD~Ii~~g~~G~~~ 161 (334)
T 2v9y_A 86 ----SVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVVGIASSGLHS 161 (334)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCEEEEEEEEECTTTSCTTCEEEEEEEEEEEEGGGCSCCGGGCCTTCEEEEEECSSSTT
T ss_pred ----HHHHHHHHHHHHHHHHhCCeEEeEEeEEcCCcccCCceeEEEEEEEEEccccccccccCCCCCCEEEEECCccHHH
Confidence 689999999999999999999999999877 35688899999998889999 9999999999999999875
Q ss_pred HHHHHHhhcCc-hhhh-hhcccCCH----HHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHh
Q psy4307 238 AVNAHQWLDQP-ERWN-RIKLIVSE----DDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKH 311 (412)
Q Consensus 238 ~~~a~~~l~~~-~~~~-~l~~~l~~----~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~ 311 (412)
.+ +.+++.. .+.. .....++. ..+.+ ..+.+..++.+....++++..+++|||||+|||+++|+||| +
T Consensus 162 ~g--~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~---~~~~p~~~~~~~~~~l~~~~~v~a~~DiS~GGL~~~L~ema-~ 235 (334)
T 2v9y_A 162 NG--FSLVRKIVAKSSLQYSSPAPDGCGDQTLGD---LLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLENIPRVL-P 235 (334)
T ss_dssp SS--HHHHHHHHHHSSCCTTSBCCTTSCSSBHHH---HHTCCCCCCHHHHHHHHHTTCCCEEEECCTTHHHHHSGGGS-C
T ss_pred HH--HHHHHhHhhhccCccccccccccchhHHHH---HHhhhhHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHh-h
Confidence 43 2222210 0000 00011111 11221 12233333344445566666799999999999999999999 9
Q ss_pred CCCeEEEEccCCCChHHHHHHHHHcCCh-hhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCC--
Q psy4307 312 QKNEVSFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN-- 388 (412)
Q Consensus 312 s~~g~~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~-- 388 (412)
|++|++|+.++||+.+.+.++|+.++.+ +.++.-| ..+++||+++|+++++++++.+++. |+++++||+|+++.
T Consensus 236 s~vg~~I~~~~iP~~~~~~~~~~~~~~~~~~~~~~~--~~g~gll~~v~~~~~~~~~~~l~~~-g~~~~~IG~V~~~~~~ 312 (334)
T 2v9y_A 236 EKLGVDLDAQTWRIPRVFSWLQQEGHLSEEEMARTF--NCGVGAVLVVSKEQTEQILRGIQQH-KEEAWVIGSVVARAEG 312 (334)
T ss_dssp TTEEEEEEGGGSCCCHHHHHHHHHHTCCHHHHHHHC--CTTEEEEEEECGGGHHHHHHHHHHT-TCCEEEEEEEEEC---
T ss_pred cCeEEEEecccCCCcHHHHHHHHhcCCCHHHHHHHh--CCCCCEEEEECHHHHHHHHHHHHhc-CCCeEEEEEEeccCCC
Confidence 9999999999999999999999988765 3331111 1344599999999999999999987 89999999998853
Q ss_pred -ceEEEE
Q psy4307 389 -RTARII 394 (412)
Q Consensus 389 -~~v~i~ 394 (412)
+.+++.
T Consensus 313 ~~~V~~~ 319 (334)
T 2v9y_A 313 SPRVKVK 319 (334)
T ss_dssp -CCEEEE
T ss_pred CCeEEEe
Confidence 345553
No 17
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=1.1e-38 Score=345.37 Aligned_cols=304 Identities=14% Similarity=0.147 Sum_probs=220.3
Q ss_pred CCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC-CCCCCChhHHHH
Q psy4307 53 LKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF-YPLVDDPYMMGK 131 (412)
Q Consensus 53 ~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~-~p~~~dp~~~G~ 131 (412)
..||..|.++.+|++ +... +++ ++ .++||||||+++++ +..+++++|+| +|.+.+||.+|+
T Consensus 39 sehc~~k~~~~~~~~----~~~~-----~~~-v~-------~g~gdDaavi~~~~-~~~l~~~ve~h~~p~~~~P~~gg~ 100 (725)
T 3ac6_A 39 SEHCAYKNSRPLLKA----LPKE-----GEA-VL-------QGPGENAGVVRVGE-GWAVAFKIESHNHPSAVEPFQGAA 100 (725)
T ss_dssp SHHHHCTTTHHHHTT----SCCC-----CTT-EE-------ECTTSSSEEEEEET-TEEEEEEEEECHHHHHHCHHHHHH
T ss_pred hhhhcCCCCHHHHhc----CCCC-----CCc-eE-------EecCCceEEEEeCC-CeEEEEEeCcCCCCcccChHHHHH
Confidence 459999998876542 3221 121 33 47799999999975 56899999986 477899999999
Q ss_pred HHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC----ceeEeEEEE
Q psy4307 132 IACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP----WCTIGGVAT 207 (412)
Q Consensus 132 ~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~----~~~i~~t~i 207 (412)
+++++++|||+||||+|+ ++++++++|+...+ +..++++++++|+.++|+++|++++||||.+++ .|+++++++
T Consensus 101 ~~v~~~l~Di~amGA~P~-~~l~~l~~~~~~~~-~~~~~l~~~~~Gi~~~~~~~G~~lvgG~t~~~~~~~~~~~i~~~~v 178 (725)
T 3ac6_A 101 TGVGGILRDIMSMGARPI-ALLDSLRFGPPEEA-RSRYLLKGVVSGIAFYGNAIGVPTVGGDLYFHEGYRENPLVNAMCL 178 (725)
T ss_dssp HHHHHHHHHHHHTTCEEE-EEEEEEEESCTTSH-HHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECGGGSSSCEEEEEEE
T ss_pred HHHhhhhhhhhccCChhH-hheeeEEcCCCCCc-cHHHHHHHHHHHHHHHHHHhCCCeeEEEEEEeCCcCCCceEEEEEE
Confidence 999999999999999999 68889999865433 234789999999999999999999999999865 378999999
Q ss_pred EEecCCccccCCCCCCCCEEEEec----ccChHHHHHHHHhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHH
Q psy4307 208 TVCQPNEYIVPDNAVVGDVLVLTK----PLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAAR 283 (412)
Q Consensus 208 G~~~~~~~~~~~~a~~GD~Iiltg----~lG~~~~~~a~~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~ 283 (412)
|.++++++ .++++++||.|+++| +.|.++...+.+.+.. .. ....+ .++.. ....+ .++.+...+
T Consensus 179 G~v~~~~~-~~~~a~~GD~ii~~G~~~g~~G~gg~~~~~~~~~~--~~---~~~~p--~v~~g-~~~~e--~~~~~~~~~ 247 (725)
T 3ac6_A 179 GLLREEHL-KRSRASLGRPIYYAGAKTGRDGIGGAAFASRELKE--EK---AEDRP--AVQVG-DPFLG--KLLMEATLE 247 (725)
T ss_dssp EEEEGGGC-CCBCCCTTCEEEEEESCBCSCCC-----------------------------CC-CHHHH--HHHHHHHHH
T ss_pred EEeChhhc-ccCCCCCCCEEEEECCCCCCCcchHHHHHHHhhcc--cc---ccCCc--ccccC-CHHHH--HHHHHHHHH
Confidence 99987664 478999999999977 6777765433221110 00 00000 00000 00000 012223334
Q ss_pred HHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccH
Q psy4307 284 LMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQA 363 (412)
Q Consensus 284 l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a 363 (412)
+++...+++|||+|+|||+++|.|||.+|++|++|+++++|+.+.... .+.++- .+++++||++++++++
T Consensus 248 l~~~~~i~a~~Di~~gGL~~~l~ema~~sg~g~~i~l~~vP~~~~~~~-------~~e~~~---se~q~~ll~~v~~~~~ 317 (725)
T 3ac6_A 248 AIELDLVEGVQDMGAAGLTSSLSELAHKSGLGVELHLDLVPTREEGMT-------PEELLL---SESQERMVLVPKEGKE 317 (725)
T ss_dssp HHHTTCEEEEEECCTTHHHHHHHHHHHHTTSEEEEEGGGSCBSSSSCC-------HHHHHH---CCCSSEEEEEECTTCH
T ss_pred HHhcCCeeEEEeCCCChHHHHHHHHHHhcCCeEEEEeccCCCCcCCCC-------HHHHHh---cCCcCcEEEEEChHHH
Confidence 555667999999999999999999999999999999999998764211 122211 2456789999999999
Q ss_pred HHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE
Q psy4307 364 AAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 364 ~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~ 399 (412)
+++++.+++. +.++++||+|++++ ++++..+|+.
T Consensus 318 ~~~~~~~~~~-~~~~~vIG~vt~~~-~~~~~~~g~~ 351 (725)
T 3ac6_A 318 KALEEVFGRW-GLDCVPVARTIPER-VFRVLFRGEV 351 (725)
T ss_dssp HHHHHHHHHT-TCCEEEEEEEESSS-EEEEEETTEE
T ss_pred HHHHHHHHHc-CCCEEEEEEEEeCC-eEEEEECCcE
Confidence 9999999987 89999999999764 5666666654
No 18
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=100.00 E-value=2.5e-38 Score=336.06 Aligned_cols=290 Identities=16% Similarity=0.190 Sum_probs=214.9
Q ss_pred CCCcccccCCHHHHHHHHHhhccCccccccccchhcccccCCCCCCCCeeEEecCCCCceeEEEecCC-CCCCCChhHHH
Q psy4307 52 DLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFF-YPLVDDPYMMG 130 (412)
Q Consensus 52 ~~~GcggK~~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~GdDaavi~~~~~~~~lv~ttD~~-~p~~~dp~~~G 130 (412)
-..+|..|.++.+|+. + +.+++||||||+++++ +..+++|+|+| +|.+.+||.+|
T Consensus 41 ~sehc~~k~~~~~~~~----~-------------------~~~g~gdDAavi~~~~-~~~l~~t~e~h~~p~~~~P~~gg 96 (615)
T 1vk3_A 41 WSEHCGYSHTKKYIRR----L-------------------PKTGFEGNAGVVNLDD-YYSVAFKIESHNHPSAIEPYNGA 96 (615)
T ss_dssp TSHHHHCTTTHHHHHT----S-------------------CBCTTSSSTTEEESSS-SEEEEEEEEECHHHHHHCHHHHH
T ss_pred cCCccccCchHHHHhh----c-------------------cCCCCCCceEEEEeCC-CeEEEEEecccCCccccChhHHH
Confidence 3458999987766542 1 1156789999999975 56899999986 56789999999
Q ss_pred HHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHHHHHHHHHHHHHHcCCeEEcccccccC----ceeEeEEE
Q psy4307 131 KIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP----WCTIGGVA 206 (412)
Q Consensus 131 ~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~~~~----~~~i~~t~ 206 (412)
++++++++|||+||||+|+ +++++|++| ++++++++|+.++|+++|++++||||.+.+ .|++++++
T Consensus 97 ~~av~~~lrDi~a~GA~P~-a~l~~l~~g---------~~l~~~~~Gi~~~~~~~GvplvGG~t~~~~~y~~~p~~~~~~ 166 (615)
T 1vk3_A 97 ATGVGGIIRDVLAMGARPT-AIFDSLHMS---------RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLA 166 (615)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEEEEEEES---------SCCHHHHHHHHHHHHHHTCCEEEEEEEECGGGTTCCEEEEEE
T ss_pred HHHHHHHhccccccCceeh-hhhhhhhHH---------HHHHHHHHHHHHHHHHcCCCEeEEEEEEecCCCCCceEEEEE
Confidence 9999999999999999999 688899998 257789999999999999999999997654 37899999
Q ss_pred EEEecCCccccCCCCCCCCEEEEecc----cChHHHHHHHHhhcCch-hhhhhcccCCHHHHHHHHHHHHHhhhhhHHHH
Q psy4307 207 TTVCQPNEYIVPDNAVVGDVLVLTKP----LGTQVAVNAHQWLDQPE-RWNRIKLIVSEDDVRKAYQRSMDSMARLNRIA 281 (412)
Q Consensus 207 iG~~~~~~~~~~~~a~~GD~Iiltg~----lG~~~~~~a~~~l~~~~-~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~ 281 (412)
+|.++++++++++++++||.|+++|. .|.++...+.+.+.... ..... .......++ .+.+..
T Consensus 167 vG~v~~~~~~~~~~~~~GD~Iil~G~~tg~~G~~g~~~~~~~~~~~~~~~~~v--~~~~~~~e~----------~~~~~~ 234 (615)
T 1vk3_A 167 AGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLSI--QVGDPFAEK----------MLIEAF 234 (615)
T ss_dssp EEEEETTSCCCSSCCSTTCEEEEEESCBCSCC----------------CGGGC--CCCCHHHHH----------HHHHHH
T ss_pred EEEEcHHHccCccCCCCcCEEEEECCCCCCCcccHHHHHHHHhhccccccccc--CcCCHHHHH----------HHHHHH
Confidence 99999888899999999999999765 56665532222111100 00000 011111111 112222
Q ss_pred HHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccc
Q psy4307 282 ARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPRE 361 (412)
Q Consensus 282 ~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e 361 (412)
..+++...+++|||+|+|||+++|.|||.++++|++|+++++|+.+.... .++++- .+++|+||++++++
T Consensus 235 ~~l~~~~~i~a~~Dis~gGL~~~l~ema~~sg~G~~Idl~~vP~~~~~~~-------~~e~l~---sesq~r~l~~v~~~ 304 (615)
T 1vk3_A 235 LEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDME-------PWEILI---SESQERMAVVTSPQ 304 (615)
T ss_dssp HHHHHHTCCSEEEECCTTHHHHHHHHHHHHTTCEEEEEGGGSCBSSTTCC-------HHHHHH---CCCSSEEEEEECGG
T ss_pred HHHHhcCCeeEEEeCCCccHHHHHHHHHHhCCceEEEEecccCCCCCCCC-------HHHHHH---cCCCCeEEEEEcHH
Confidence 34445567999999999999999999999999999999999998764111 122211 34677999999999
Q ss_pred cHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCeE
Q psy4307 362 QAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 362 ~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~~ 399 (412)
+++++++.+++. ++++++||+|++++ .+++..+|+.
T Consensus 305 ~~~~~~~~~~~~-g~~~~vIG~Vt~~~-~l~v~~~g~~ 340 (615)
T 1vk3_A 305 KASRILEIARKH-LLFGDVVAEVIEEP-VYRVMYRNDL 340 (615)
T ss_dssp GHHHHHHHHHHT-TCEEEEEEEEESSC-EEEEEETTEE
T ss_pred HHHHHHHHHHHc-CCCEEEEEEEEeCC-eEEEEECCeE
Confidence 999999999987 99999999999764 4666666653
No 19
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=4.8e-35 Score=316.88 Aligned_cols=268 Identities=13% Similarity=0.076 Sum_probs=204.3
Q ss_pred CCCC-CCeeEEecCCCCceeEEEecCCCCC-CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHH
Q psy4307 94 IGIG-MDSAVIPLRHGGLSLVQTTDFFYPL-VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVI 171 (412)
Q Consensus 94 ~~~G-dDaavi~~~~~~~~lv~ttD~~~p~-~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l 171 (412)
..+| +||||+++++.+..+++|+|++++. +.|||.+|+.||++++|||+||||+|+ ++++++++|...+ .+..+.+
T Consensus 424 ~~pg~~DaaVi~~~~~~~~la~s~d~~~~~~~~dP~~~g~~AVaeav~di~a~Ga~Pl-~~~~~l~~g~~~~-~~~~~~l 501 (725)
T 3ac6_A 424 LLPGKGDAAVLWIKGTRLGVAAKVDQNPRYSRLHPRLGAMHALAEACRNVSVVGAKPL-AYTDGLNLGSPET-PEGYHEL 501 (725)
T ss_dssp ECCSCCSSEEEEETTSSEEEEEEEECCHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEE-EEEEEEECSCSSS-HHHHHHH
T ss_pred ecCCCCceEEEEeCCCCeEEEEEEcCCCCeeeeCHHHHHHHHHHHHHHHHHHcCCcce-EEEEEEEcCCCCC-hhHHHHH
Confidence 4678 9999999974346899999998664 799999999999999999999999999 6888999975333 3455789
Q ss_pred HHHHHHHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHH--HHH
Q psy4307 172 PLMLRGFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAV--NAH 242 (412)
Q Consensus 172 ~~i~~Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~--~a~ 242 (412)
.++++|+.++|+++|++++||||+.+++ |++.++++|.++.++++++..+++||.|+++|+.|.+..+ .+.
T Consensus 502 ~~~v~Gi~~a~~~~gv~ivgG~ts~~~~~~~~~i~ptl~i~~vG~v~~~~~i~~~~~~~GD~lil~g~~g~~~ggs~l~~ 581 (725)
T 3ac6_A 502 AETIAGLKEASEALGVPVVSGNVSLYNESGGKRIPPTAMVGVVGVLEVDKRAEMGFRRPGEVLLLIGEERGELGASEVLY 581 (725)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECCCEETTEECCCEEEEEEEEEEEGGGCCBSSCCSTTCEEEEESCSCCBCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCeeeeeeeecCCCCCCccCCceEEEEEEEechhhccChhhCCCCCEEEEEcCCCCCccHHHHHH
Confidence 9999999999999999999999998763 5788999999987788999999999999999998644111 111
Q ss_pred HhhcCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccC
Q psy4307 243 QWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHN 322 (412)
Q Consensus 243 ~~l~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~ 322 (412)
..+.. .....+..+++. ...+......++++..++||||+|+|||+++|+|||.++++|++|+.+.
T Consensus 582 ~~~~~------~~~~~p~~d~~~--------~~~~~~~v~~l~~~~~v~a~~Dis~GGL~~~L~ema~~~~~G~~i~~~~ 647 (725)
T 3ac6_A 582 LLTGK------EFGHPPRLDLGR--------EKAVQEAIRDLIQRGLTRTAHDVAEGGLLLALAEMTFPYGVGATVEVRE 647 (725)
T ss_dssp HHHSC------CCSCCCCCCHHH--------HHHHHHHHHHHHHTTSCSBEEECCTTHHHHHHHHTTTTTCCCEEEECSC
T ss_pred HHhcc------cCCCCCCCCHHH--------HHHHHHHHHHHHhcCCEEEEEeCCCCcHHHHHHHHHhcCCCcEEEEeCc
Confidence 11111 001122111111 0111112234556667999999999999999999999999999999864
Q ss_pred CCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcCCe
Q psy4307 323 LPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPR 398 (412)
Q Consensus 323 iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~g~ 398 (412)
+. + ..|+ .+++|++|++|++++++++++.++++ |+++++||+|++ +.+++..+++
T Consensus 648 -~~------~-------~~Lf----~e~~G~~vv~v~~~~~~~~~~~l~~~-g~~~~~IG~v~~--~~~~i~~~~~ 702 (725)
T 3ac6_A 648 -EG------L-------EALF----GEAPSRVLFTVEKTRLQEATLLLEER-GLPYRVLGETGG--KSLTVLTPGG 702 (725)
T ss_dssp -CS------H-------HHHT----CBCSSCEEEEECGGGHHHHHHHHHHT-TCCEEEEEEECS--SEEEEEETTE
T ss_pred -ch------H-------HHhh----CCCCCeEEEEEcHHHHHHHHHHHHhC-CCCeEEEEEEeC--CEEEEeeCCe
Confidence 21 1 1222 24688999999999999999999987 899999999864 4566655554
No 20
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=99.98 E-value=1.2e-31 Score=266.40 Aligned_cols=283 Identities=16% Similarity=0.136 Sum_probs=201.9
Q ss_pred CCCCeeEEe---cCCCCceeEEEecCCCC---CC----------CChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcC
Q psy4307 96 IGMDSAVIP---LRHGGLSLVQTTDFFYP---LV----------DDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVS 159 (412)
Q Consensus 96 ~GdDaavi~---~~~~~~~lv~ttD~~~p---~~----------~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp 159 (412)
++..|.+++ -+..+..||.+||+.-. +. .....+|+++|++|+|||+||||+|+ +++++ ++|
T Consensus 33 ~~~~~~~~~~~~~~~~~pvLv~~tDGVGTKl~lA~~~~k~tg~~~~~~tIG~daVam~VNDIaamGA~Pl-~~L~~-a~g 110 (394)
T 3kiz_A 33 PRAFCKIIPDILGGDPEYCNIMHADGAGTKSSLAYVYWKETGDISVWKGIAQDAVIMNIDDLICVGAVDN-ILLSS-TIG 110 (394)
T ss_dssp TTSSSCCEECTTTCCTTEEEEEEEEECTTHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHGGGTCCSS-EEEEE-EEE
T ss_pred CCcceeecchhhcCCCCceEEEEccCCcHHHHHHHHhhhhcccccchhhhhhhheEeeHHHHHhCcCchH-HHHHh-hcC
Confidence 456777764 11125689999998532 11 12456999999999999999999998 56665 555
Q ss_pred C---CCChhhHhhHHHHHHHHHHHHH---HHcC--CeEEcccccccCc----eeEeEEEEEEecCCccccCCCCCCCCEE
Q psy4307 160 T---KMTEKERDVVIPLMLRGFKDSA---LEAG--TAVTGGQTVVNPW----CTIGGVATTVCQPNEYIVPDNAVVGDVL 227 (412)
Q Consensus 160 ~---~~~~~e~~~~l~~i~~Gi~~a~---~~~g--v~ivGG~T~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~I 227 (412)
. ..+. +++++|++|+.++| +++| ++++||||.+.|. +.+++|++|+++++++++++++||||.|
T Consensus 111 ~l~~~~~~----e~l~~Iv~Gi~e~~~~~~~aGvg~~LVGGeTae~p~l~~~~~i~~t~vGiV~~~~ii~~~~ak~GD~I 186 (394)
T 3kiz_A 111 RNKNLIPG----EVLAAIINGTEEVLQMLRDNGIGIYSTGGETADVGDLVRTIIVDSTVTCRMKRQDVISNENIKAGNVI 186 (394)
T ss_dssp ECTTTSCH----HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEECTTTBSSEEEEEEEEEEEEGGGCCCGGGCCTTCEE
T ss_pred cCccCCCH----HHHHHHHHHHHHHHHHHHHhCCCceEEeeeeeEcCCcccCccEEEEEEEEEccCcccccccCCCCCEE
Confidence 2 3444 68999999999999 6998 6999999999886 3688999999999999999999999999
Q ss_pred EEecccCh-----------HH--HHHHHHhhcCc-------hhhh-------------hhcccCCH--HHHHHHHHHHHH
Q psy4307 228 VLTKPLGT-----------QV--AVNAHQWLDQP-------ERWN-------------RIKLIVSE--DDVRKAYQRSMD 272 (412)
Q Consensus 228 iltg~lG~-----------~~--~~~a~~~l~~~-------~~~~-------------~l~~~l~~--~~l~~a~~~~~~ 272 (412)
+++++.|. |. .+.+-+.+... +.++ .+...++. ..+- +..+.
T Consensus 187 Igl~SsG~~~~~~~~~~~~HSNG~SLvRk~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lg---e~LL~ 263 (394)
T 3kiz_A 187 VGFASYGQTSYETEYNGGMGSNGLTSARHDVFNNVLASKYPESFDPKVPENLVYSGEMNLTDPYLNVPLDAG---KLVLS 263 (394)
T ss_dssp EEEESSBCCTTCSSCBCCCTTSSHHHHHHHHBCTHHHHHCGGGSCTTSCGGGSSCSSBCTTCCCTTCSSCHH---HHHHC
T ss_pred EEECCcccccccccccCCccchHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccCCcHH---HHHhh
Confidence 99999992 32 22222211100 0000 00111111 1121 22345
Q ss_pred hhhhhHHHHHHHHhhc--CceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCCh-hhhccCCccc
Q psy4307 273 SMARLNRIAARLMHKY--NAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAE 349 (412)
Q Consensus 273 ~~~~l~~~~~~l~~~~--~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~e 349 (412)
|...+.+....++... .+|+|.|||+|||.. +.++. .++++ .|+.+.+|+.+-.+.+++..+.+ .+|+.-|
T Consensus 264 PTriY~~~v~~ll~~~~~~I~gmaHITGGGl~~-~~R~l-p~~~~-~I~~~~wpvppiF~~l~~~G~v~~~EM~rtF--- 337 (394)
T 3kiz_A 264 PTRTYAPLMKEIIHQYKGKLDGVVHCSGGGQTK-VLHFT-DATTH-IIKDNLFDVPPLFQLIQGQSNTPWEEMYKVF--- 337 (394)
T ss_dssp CCCCCHHHHHHHHHHSTTCCSEEEECCTTGGGG-GGGGC-CTTCE-EEECSCCCCCHHHHHHHHHHTCCHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhhhccceEeeccCccchhh-hhhhc-CCccE-EEcCCCCCCCHHHHHHHHhCCCCHHHHHHhc---
Confidence 5443333333444443 699999999999987 55765 56788 89999999988888888888776 3455444
Q ss_pred ccc-eEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeC--CceEEEE
Q psy4307 350 TSG-GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKG--NRTARII 394 (412)
Q Consensus 350 tsG-glLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~--~~~v~i~ 394 (412)
+.| ||+++|++++++++++.|+++ |.++|+||+|+++ .+.+.+.
T Consensus 338 NmGiGmVlvV~~e~a~~vl~~L~~~-G~~A~iIG~V~~~~~~~~V~l~ 384 (394)
T 3kiz_A 338 NMGHRLEIYTDAAHAEGMIAIAKKF-NIEAKIIGRVEAPVAGKRLTIT 384 (394)
T ss_dssp CTTEEEEEEECHHHHHHHHHHHHHT-TCCEEEEEEEESCBTTBSEEEE
T ss_pred CCcccEEEEECHHHHHHHHHHHHHc-CCCeEEEEEEecCCCCCeEEEE
Confidence 577 899999999999999999997 9999999999976 2345554
No 21
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=99.97 E-value=1.4e-31 Score=265.60 Aligned_cols=282 Identities=17% Similarity=0.153 Sum_probs=199.8
Q ss_pred CCCCeeEEec---CCCCceeEEEecCCCC---CC----------CChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcC
Q psy4307 96 IGMDSAVIPL---RHGGLSLVQTTDFFYP---LV----------DDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVS 159 (412)
Q Consensus 96 ~GdDaavi~~---~~~~~~lv~ttD~~~p---~~----------~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp 159 (412)
++..|.+++- +..+..||.+||+.-. +. .....+|+++|++|+|||+||||+|+ +++++ .+|
T Consensus 32 ~~~~~~~~~~~~~~~~~pvLv~~tDGVGTKl~lA~~~~k~~g~~~~~~tIG~daVamnVNDIaamGA~Pl-~~L~~-a~g 109 (389)
T 3mdo_A 32 PKAFCKIIPDILGGDPEYCNIMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAVDN-ILVSS-TIG 109 (389)
T ss_dssp TTSSSCCEECTTTCCTTEEEEEEEEECTTHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTTCCSS-EEEEE-EEE
T ss_pred CCcceeecchhhcCCCCceEEEecCCCcHHHHHHHHhhhhccccchHHHHHhHheEeeHHHHHhCcCChH-HHHHh-hcC
Confidence 4678888861 1125689999998532 10 12456999999999999999999998 56665 555
Q ss_pred C---CCChhhHhhHHHHHHHHHHHHH---HHcC--CeEEcccccccCc----eeEeEEEEEEecCCccccCCCCCCCCEE
Q psy4307 160 T---KMTEKERDVVIPLMLRGFKDSA---LEAG--TAVTGGQTVVNPW----CTIGGVATTVCQPNEYIVPDNAVVGDVL 227 (412)
Q Consensus 160 ~---~~~~~e~~~~l~~i~~Gi~~a~---~~~g--v~ivGG~T~~~~~----~~i~~t~iG~~~~~~~~~~~~a~~GD~I 227 (412)
. ..+. +++++|++|+.++| +++| |+++||||.+.|. +.+++|++|++++++++++++++|||.|
T Consensus 110 ~l~~~~~~----e~l~~Iv~Gi~e~c~~~~~aGigv~LVGGeTae~p~l~~~~~v~~t~vGiV~~~~ii~~~~ak~GD~I 185 (389)
T 3mdo_A 110 RNKLLVPG----EVISAIINGTDELLAELREMGVGCYATGGETADVGDLVRTIIVDSTVTCRMKRSDVIDNKNIQGGDVI 185 (389)
T ss_dssp ECTTTSCH----HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEECTTTBSSEEEEEEEEEEEEGGGCCCGGGCCTTCEE
T ss_pred cCccCCCH----HHHHHHHHHHHHHHHHHHHhCCCcEEeCccceECCCcccCccEEEEEEEEEccccccccccCCCCCEE
Confidence 3 3444 68999999999999 4896 9999999999886 3588999999999999999999999999
Q ss_pred EEecccCh-----------H--HHHHHHHhhcCc-------hhhh-------------hhcccCCH--HHHHHHHHHHHH
Q psy4307 228 VLTKPLGT-----------Q--VAVNAHQWLDQP-------ERWN-------------RIKLIVSE--DDVRKAYQRSMD 272 (412)
Q Consensus 228 iltg~lG~-----------~--~~~~a~~~l~~~-------~~~~-------------~l~~~l~~--~~l~~a~~~~~~ 272 (412)
+++++.|. | +.+.+-+.+... +.++ .+...++. ..+- +..+.
T Consensus 186 Igl~S~G~~~~~~~~~~~~HSNG~SLvRk~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lg---e~LL~ 262 (389)
T 3mdo_A 186 VGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAAVPKELVYSGGLKLTDKIEELGIDAG---KMVLS 262 (389)
T ss_dssp EEEESSBCCTTCSSCBCCCCSSSHHHHHHHHBCTHHHHHCGGGSCTTSCTTTTTCSSBCTTCEETTTTEEHH---HHHHC
T ss_pred EEECCcccccccccccCCccccHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccCCCcHH---HHHhh
Confidence 99999983 3 222222211100 0000 00001111 1121 22344
Q ss_pred hhhhhHHHHHHHHhhc--CceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCCh-hhhccCCccc
Q psy4307 273 SMARLNRIAARLMHKY--NAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNM-FQLLQGHSAE 349 (412)
Q Consensus 273 ~~~~l~~~~~~l~~~~--~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~-~~l~~~~d~e 349 (412)
|...+.+....++... .+|+|.|||+|||...+.++ .++ ..|+.+.+|+++....+++..+.+ .+|+..|
T Consensus 263 PTriY~~~v~~ll~~~~~~V~gmaHITGGGl~~~lr~~---~~~-~~i~~~~wpvppiF~~l~~~G~v~~~EM~rtF--- 335 (389)
T 3mdo_A 263 PTRTYAPVIKVLLDKLRSQIHGMVHCSGGAQTKVMHFV---ENK-RVTKDNLFPIPPLFRTIQEQSGTDWSEMYKVF--- 335 (389)
T ss_dssp CCCCCHHHHHHHHHHHGGGCCEEEECCTTGGGGGGGGC---SSE-EEEECSCCCCCHHHHHHHHHHCCCHHHHHHHS---
T ss_pred hHHHHHHHHHHHHHHhhhcceEEeeccCcChhhhhhhc---CCc-EEecCCCCCCCHHHHHHHHhcCCCHHHHHHhc---
Confidence 5333332223333322 69999999999999877555 345 478889999988888888887776 3454444
Q ss_pred ccc-eEEEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCc-eEEEE
Q psy4307 350 TSG-GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNR-TARII 394 (412)
Q Consensus 350 tsG-glLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~-~v~i~ 394 (412)
++| ||+++|++++++++++.|++. |.++++||+|+++.+ .+.+.
T Consensus 336 NmGiGmVlvV~~e~a~~vl~~l~~~-G~~A~iIG~V~~~~~~~V~l~ 381 (389)
T 3mdo_A 336 NMGHRMEIYIAPEHAEEVIGISKSF-GIDAQIVGFVEEADKNELIIE 381 (389)
T ss_dssp CTTEEEEEEECGGGHHHHHHHHHHT-TCCEEEEEEEEECSSCEEEEE
T ss_pred cCcceEEEEECHHHHHHHHHHHHHc-CCCeEEEEEEEeCCCCeEEEE
Confidence 577 899999999999999999997 999999999998754 55554
No 22
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.96 E-value=1.1e-27 Score=268.99 Aligned_cols=265 Identities=15% Similarity=0.090 Sum_probs=196.1
Q ss_pred CCCCCeeEEecC-CCCceeEEEecCCCC-CCCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhc--CCCCChhhHhhH
Q psy4307 95 GIGMDSAVIPLR-HGGLSLVQTTDFFYP-LVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAV--STKMTEKERDVV 170 (412)
Q Consensus 95 ~~GdDaavi~~~-~~~~~lv~ttD~~~p-~~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~l--p~~~~~~e~~~~ 170 (412)
.+++||||++++ +.+..+++|+|++++ ...|||.+|++||++|+|||+|||++|+..+..++++ +.+.+.+ .+.
T Consensus 683 ~p~~DaAVi~~~~~~~~gla~s~g~~p~~~~~dP~~ga~~AVaealsnlaA~Ga~pl~~v~lsln~~~~~g~P~~--~~~ 760 (1303)
T 3ugj_A 683 VPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGE--DAG 760 (1303)
T ss_dssp EECCSSEEEESSTTCSCEEEEEEEECGGGGGTCHHHHHHHHHHHHHHHHTTSCCCSGGGCEEEEEEECBTTSTTH--HHH
T ss_pred CCCCCeEEEEEeCCCCeEEEEEEecCCCccccCHHHHHHHHHHHHHHHhhcCCCccHHHeEeecccccccCCCch--HHH
Confidence 358999999986 235689999999865 4789999999999999999999999998434334443 3333322 256
Q ss_pred HHHHHHHHH-HHHHHcCCeEEcccccccC--------------c-eeEeEEEEEEecC-CccccCCCCCCCCEEEEe--c
Q psy4307 171 IPLMLRGFK-DSALEAGTAVTGGQTVVNP--------------W-CTIGGVATTVCQP-NEYIVPDNAVVGDVLVLT--K 231 (412)
Q Consensus 171 l~~i~~Gi~-~a~~~~gv~ivGG~T~~~~--------------~-~~i~~t~iG~~~~-~~~~~~~~a~~GD~Iilt--g 231 (412)
+.++++|+. ++|+++|++++|||++.++ . +++.++++|.+++ ++.+++..+++||.|++. +
T Consensus 761 L~~a~~g~~~d~c~~lgvpiiGGkdSlsn~t~~~~~g~~~~v~~P~TlvitavG~v~dv~~~vt~~~k~~Gd~LilV~lg 840 (1303)
T 3ugj_A 761 LYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDLG 840 (1303)
T ss_dssp HHHHHHHHHTTHHHHHTCEEEEEEEECBCEEEECCC--CEEEECCCEEEEEEEEEESCGGGCCCSCCCCSSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHcCCCeeeccccCccceecccCCCcCccCCCCceEEEEEEECCCcCcccCcccCCCCCEEEEEECC
Confidence 889999999 9999999999999987652 1 4778899998876 788999999999988765 3
Q ss_pred ----ccChHHHHHHHHhhcCchhhhhhcccCC----HHHHHHHHHHHHHhhhhhHHHHHHHHhhcCceEEecCCCChHHH
Q psy4307 232 ----PLGTQVAVNAHQWLDQPERWNRIKLIVS----EDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLG 303 (412)
Q Consensus 232 ----~lG~~~~~~a~~~l~~~~~~~~l~~~l~----~~~l~~a~~~~~~~~~~l~~~~~~l~~~~~i~a~~DiT~GGL~~ 303 (412)
.+|.+... . .+.. +....+ .+.+++.+ .....++++..++||||+|+|||+.
T Consensus 841 ~~~~~LGGS~la--~-~~g~------~g~~~P~vd~~~~lk~~~-----------~~v~~li~~G~v~AahDvSdGGLa~ 900 (1303)
T 3ugj_A 841 KGHNALGATALA--Q-VYRQ------LGDKPADVRDVAQLKGFY-----------DAMQALVAARKLLAWHDRSDGGLLV 900 (1303)
T ss_dssp TTCCCCTTSHHH--H-HTTC------CCSCCCCCCCHHHHHHHH-----------HHHHHHHHTTCCSEEEECCTTHHHH
T ss_pred CCCCCccHHHHH--H-HhCc------ccCCCCCCCCHHHHHHHH-----------HHHHHHHHcCCeEEEEeCCCChHHH
Confidence 46666542 2 2211 111122 12221111 1223455666799999999999999
Q ss_pred HHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCc--eeEE
Q psy4307 304 HAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQ--AWII 381 (412)
Q Consensus 304 ~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~--a~vI 381 (412)
+|.|||.++++|++|+++++|+.+. .. |++ |+.| .+++|++++++++++.++++ |++ +.+|
T Consensus 901 aL~Ema~as~vG~~Idl~~ip~~~~----~~-------LF~----E~~G-~vv~V~~~~~~~v~~~l~~~-gi~~~a~~I 963 (1303)
T 3ugj_A 901 TLAEMAFAGHCGVQVDIAALGDDHL----AA-------LFN----EELG-GVIQVRAEDRDAVEALLAQY-GLADCVHYL 963 (1303)
T ss_dssp HHHHHHHHHTSEEEEECGGGCSCHH----HH-------HHC----CCSE-EEEEEEGGGHHHHHHHHHHT-TCGGGEEEE
T ss_pred HHHHHHHhCCceEEEEecCCCCchh----HH-------HhC----CCCC-eEEEEEHHHHHHHHHHHHhC-CCCCceEEE
Confidence 9999999999999999999997641 11 221 3455 58999999999999999987 887 7999
Q ss_pred EEEEeCCceEEEEcCCeE
Q psy4307 382 GIVEKGNRTARIIDKPRV 399 (412)
Q Consensus 382 G~V~~~~~~v~i~~~g~~ 399 (412)
|+|+++ ..++|..+++.
T Consensus 964 G~V~~~-~~l~i~~~g~~ 980 (1303)
T 3ugj_A 964 GQALAG-DRFVITANDQT 980 (1303)
T ss_dssp EEEESS-SEEEEEETTEE
T ss_pred EEEcCC-CcEEEEECCEE
Confidence 999975 45777767764
No 23
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.95 E-value=4e-27 Score=264.51 Aligned_cols=279 Identities=13% Similarity=0.067 Sum_probs=192.4
Q ss_pred CCCCCCeeEEecC---------CCC--------ceeEEEecCC-CCCCCChhHHHHHHHHHHHhHhhhc--CccchHHHH
Q psy4307 94 IGIGMDSAVIPLR---------HGG--------LSLVQTTDFF-YPLVDDPYMMGKIACSNVLSDLYAM--GVTECDNLL 153 (412)
Q Consensus 94 ~~~GdDaavi~~~---------~~~--------~~lv~ttD~~-~p~~~dp~~~G~~av~~~vsDIaam--Ga~P~~~~l 153 (412)
.++||+|+|++.. +++ ..++++.++| +|...+||..+...+-..++|+.+| ||+|+ +.+
T Consensus 262 ~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~e~~~v~fK~ETHNHPsaIePf~GAaTGvGG~iRD~~~~G~GarPi-A~~ 340 (1303)
T 3ugj_A 262 SAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPK-AGL 340 (1303)
T ss_dssp ECSSSSSEEEEEEEEEEEEECTTTCBEEEEEEEEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTSTTCCEEE-EEE
T ss_pred EEecCccEEeeecccccccccCCccccccccceeEEEEEEeccCCCCccCCcCcccceeEEEEEchhccCCCCEee-eee
Confidence 4789999999742 111 4689999997 7889999999999999999999995 99999 677
Q ss_pred hhhhc-----CCCCCh--------hh----HhhHHHHHHHHHHHHHHHcCCeEEccccc-cc--------------Ccee
Q psy4307 154 MLVAV-----STKMTE--------KE----RDVVIPLMLRGFKDSALEAGTAVTGGQTV-VN--------------PWCT 201 (412)
Q Consensus 154 ~~l~l-----p~~~~~--------~e----~~~~l~~i~~Gi~~a~~~~gv~ivGG~T~-~~--------------~~~~ 201 (412)
+.+.+ |....+ .. .+..++..+ |+.++++++|+|+|+|+|. +. ..|+
T Consensus 341 ~~~~~~~lr~~~~~~p~e~~~g~p~~~~~~~~i~~~g~~-G~s~ygN~~Gvp~V~G~~~~~~~~~~~~~~~~~~g~~kp~ 419 (1303)
T 3ugj_A 341 VGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPL-GGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPI 419 (1303)
T ss_dssp EEEEESCCCCTTCCCTTCCCCCCCTTSCCHHHHHHHHHH-HHHHHHHHHTCCEEEEEEEECEEEEEETTEEEEEECSSCE
T ss_pred eeeeeccccCCCCCCccccccCCchhccChhhhhhcccc-hHHHHHHhcCCCCcceEEEEEeeeccccccccccccCCce
Confidence 66543 311110 00 112344444 9999999999999999994 22 2478
Q ss_pred EeEEEEEEecCCccccCCCCCCCCEEEEec----ccChHHHHHHHHhhcCchhhhhhc-ccC--CHHHHHHHHHHHHHhh
Q psy4307 202 IGGVATTVCQPNEYIVPDNAVVGDVLVLTK----PLGTQVAVNAHQWLDQPERWNRIK-LIV--SEDDVRKAYQRSMDSM 274 (412)
Q Consensus 202 i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg----~lG~~~~~~a~~~l~~~~~~~~l~-~~l--~~~~l~~a~~~~~~~~ 274 (412)
+..+++|.+++++ +.+..++|||.|+++| .+|.|+++...+... +....+. ..+ ....+++..+
T Consensus 420 v~~~gvG~i~~~~-~~~~~~~~Gd~Iiv~Gg~tgr~G~gGaa~sS~~~~--~~~~~~~~~~VQ~g~p~~ek~~~------ 490 (1303)
T 3ugj_A 420 MLAGGIGNIRADH-VQKGEIVVGAKLIVLGGPAMNIGLGGGAASSMASG--QSDADLDFASVQRDNPEMERRCQ------ 490 (1303)
T ss_dssp EEEEEEEEECGGG-SSCCCCCTTCEEEEEECCBCTTCC-------------------CGGGCCCCCHHHHHHHH------
T ss_pred eEEEEEEEEehHH-cccccCCCCCEEEEECCCCCcccCcHHHHhHHhhc--ccccccCchhhccCCHHHHHHHH------
Confidence 8888999998765 4555699999999987 678887643332111 1000000 001 1122222111
Q ss_pred hhhHHHHHHHHhhcCceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCCChHHHHHHHHHcCChhhhccCCcccccceE
Q psy4307 275 ARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGL 354 (412)
Q Consensus 275 ~~l~~~~~~l~~~~~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iPv~~~~~~~~~~~~~~~~l~~~~d~etsGgl 354 (412)
++.+...+++....|++|||+|.|||+++|+|||++|++|++|++++||+.+....- ++++. .|++++|
T Consensus 491 -~li~~~lel~~~~~V~a~~D~t~GGL~~~l~Ema~~sgvG~~Idld~vP~~~~gl~p-------~ei~~---sesqerm 559 (1303)
T 3ugj_A 491 -EVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSP-------LEIWC---NESQERY 559 (1303)
T ss_dssp -HHHHHHHTTGGGCCEEEEEECCTTTHHHHHHHHHHHTTCEEEEEGGGSCBSCTTCCH-------HHHHH---CCCSSEE
T ss_pred -HHHHHHHHHhccCCeeEEEECCCcHHHHHHHHHHHHcCCeEEEEhhhCCCCccCCCH-------HHHHh---CcCcceE
Confidence 121222334456679999999999999999999999999999999999998642111 22221 2456789
Q ss_pred EEEEccccHHHHHHHHHhcCCCceeEEEEEEeCCceEEEEcC
Q psy4307 355 LICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDK 396 (412)
Q Consensus 355 Li~v~~e~a~~~~~~l~~~~g~~a~vIG~V~~~~~~v~i~~~ 396 (412)
|++|+|++++++++.+++. ++++++||+|+++. ++++.++
T Consensus 560 l~~V~pe~~~~~~~~~~~~-g~~a~vIG~Vt~~~-~v~l~~~ 599 (1303)
T 3ugj_A 560 VLAVAADQLPLFDELCKRE-RAPYAVIGDATEEQ-HLSLHDN 599 (1303)
T ss_dssp EEEECGGGHHHHHHHHHHH-TCCEEEEEEEESSC-EEEEEET
T ss_pred EEEECHHHHHHHHHHHHHc-CCCeEEEEEEecCC-eEEEEEC
Confidence 9999999999999999997 99999999999864 5777654
No 24
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=99.94 E-value=4e-27 Score=250.05 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=165.9
Q ss_pred CCCCCCeeEEecCCCCceeEEEecCCCCC-CCChhHHHHHHHHHHHhHhhhcCccchHHHHhhhhcCCCCChhhHhhHHH
Q psy4307 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYPL-VDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIP 172 (412)
Q Consensus 94 ~~~GdDaavi~~~~~~~~lv~ttD~~~p~-~~dp~~~G~~av~~~vsDIaamGa~P~~~~l~~l~lp~~~~~~e~~~~l~ 172 (412)
.++|+||||+++++ +..+++|+|++++. ..|||.+||+|+++|+|||+||||+|+ +++++++||....++ +.+.
T Consensus 395 ~~pg~DaaV~~~~~-~~~~~~t~d~~~~~~~~dP~~~g~~Avaealsdl~A~Ga~p~-~~~~~l~~~~~~~~~---~~l~ 469 (615)
T 1vk3_A 395 VPPGFGAAVMRIKR-DGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPL-AITNCVNYGDPDVDP---VGLS 469 (615)
T ss_dssp SCGGGSCEEEEEET-TEEEEEEEECCHHHHTTCHHHHHHHHHHHHHHHHHHTTCEEE-EEEEEEECSCTTTCH---HHHH
T ss_pred eccCCCeEEEEEcC-CcEEEEEecCCCcccccCHHHHHHHHHHHHHHHHHHcCCccc-eeEEEEecCCCCCch---HHHH
Confidence 57789999999975 67899999998664 699999999999999999999999999 577788887432332 3689
Q ss_pred HHHHHHHHHHHHcCCeEEcccccccCc-------eeEeEEEEEEecCCccccCCCCCCCCEEEEecccChHHHHHHHHhh
Q psy4307 173 LMLRGFKDSALEAGTAVTGGQTVVNPW-------CTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWL 245 (412)
Q Consensus 173 ~i~~Gi~~a~~~~gv~ivGG~T~~~~~-------~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg~lG~~~~~~a~~~l 245 (412)
++++|+.++|+++|++++|||++.+++ |++++|++|.+++++.++ +++|| |+++|++..
T Consensus 470 ~~~~G~~~~~~~~g~~~igG~~S~~~~~~~~~~ppt~~i~a~G~v~~~~~~~---~~~Gd-l~l~g~~~~---------- 535 (615)
T 1vk3_A 470 AMMTALKNACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAK---PKPSK-VFAVGWNDF---------- 535 (615)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECCCEETTEECCCEEEEEEEEEECGGGCCC---CCSEE-EEEEEESSC----------
T ss_pred HHHHHHHHHHHHcCCCcccccccccCcCCCCcCCCeeEEEEEEEecCCcccc---CCCCe-EEEECCCCC----------
Confidence 999999999999999999999886654 689999999998766666 79999 999995431
Q ss_pred cCchhhhhhcccCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhc-CceEEecCCCChHHHHHHhHHHhCCCeEEEEccCCC
Q psy4307 246 DQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKY-NAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLP 324 (412)
Q Consensus 246 ~~~~~~~~l~~~l~~~~l~~a~~~~~~~~~~l~~~~~~l~~~~-~i~a~~DiT~GGL~~~L~ema~~s~~g~~I~~~~iP 324 (412)
..+...+. +..+ ..++.+. .++||||||+ | +|.|| . |++|++|++++||
T Consensus 536 -------------~~~~~~~~-------~~~~----~~~~~~~~~v~a~~DvSd-G---~l~em-~-s~~g~~i~~~~iP 585 (615)
T 1vk3_A 536 -------------ELEREKEL-------WRAI----RKLSEEGAFILSSSQLLT-R---THVET-F-REYGLKIEVKLPE 585 (615)
T ss_dssp -------------CHHHHHHH-------HHHH----HHHHHTTCEEECCTTSSC-H---HHHHH-H-HHTTCEEEECCCC
T ss_pred -------------CHHHHHHH-------HHHH----HHHHhCCCeEEEEEECCC-C---HHHHH-h-CCCcEEEEeCCCC
Confidence 11111111 1112 2344566 6999999998 6 99999 7 9999999999999
Q ss_pred ChHHHHHHHHHcCChhhhccCCcccccceEEEEEccccHHHHHHHHHhcCCCceeEEEEEE
Q psy4307 325 VIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 385 (412)
Q Consensus 325 v~~~~~~~~~~~~~~~~l~~~~d~etsGglLi~v~~e~a~~~~~~l~~~~g~~a~vIG~V~ 385 (412)
+.+ ..+++ |||+.++.. .+++.+.||+|+
T Consensus 586 ~~~-----------------~~d~~----llfse~~~~-----------~~v~~~~IG~v~ 614 (615)
T 1vk3_A 586 VRP-----------------AHQMV----LVFSERTPV-----------VDVPVKEIGTLS 614 (615)
T ss_dssp CCS-----------------SCEEE----EEEESSCCC-----------CSSCEEEEEEEE
T ss_pred CCC-----------------CcccE----EEEeccccc-----------CCCCeeEeeeEe
Confidence 863 12455 888886542 278899999986
No 25
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=48.82 E-value=32 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=28.9
Q ss_pred ccceEEEEEcc--ccHHHHHHHHHhcCCCceeEEEEEEe
Q psy4307 350 TSGGLLICLPR--EQAAAYCKDIEKQEGYQAWIIGIVEK 386 (412)
Q Consensus 350 tsGglLi~v~~--e~a~~~~~~l~~~~g~~a~vIG~V~~ 386 (412)
.-|.|++.++- ++.+++++.|++. ++...++|.|.+
T Consensus 63 ~~G~L~v~l~G~~~~~~~ai~~L~~~-~v~vEvl~~~~~ 100 (106)
T 3dhx_A 63 KFGIMLTEMHGTQQDTQAAIAWLQEH-HVKVEVLGYVLE 100 (106)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHHT-TCEEEEEEEEEC
T ss_pred eEEEEEEEEeCCHHHHHHHHHHHHHC-CCEEEEeeeeee
Confidence 45678888864 4567888999997 999999999976
No 26
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=28.70 E-value=65 Score=24.74 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=25.1
Q ss_pred cceEEEEEcc--ccHHHHHHHHHhcCCCceeEEEEE
Q psy4307 351 SGGLLICLPR--EQAAAYCKDIEKQEGYQAWIIGIV 384 (412)
Q Consensus 351 sGglLi~v~~--e~a~~~~~~l~~~~g~~a~vIG~V 384 (412)
-|.|++.++. ++.+++++.|+++ ++...++|.|
T Consensus 66 ~G~L~v~l~G~~~~~~~ai~~L~~~-~v~vEvlg~v 100 (101)
T 2qrr_A 66 FGMMVAELFGNEQDDSAAIEYLREN-NVKVEVLGYV 100 (101)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHT-TCEEEEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHHHHHHc-CCEEEEeccc
Confidence 4678888864 4457888899887 8888888765
No 27
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=27.08 E-value=38 Score=25.41 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=27.4
Q ss_pred cCCeEEcccccccCceeEeEEEEEEecCCccccCCC-CCCCCEEEEec
Q psy4307 185 AGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDN-AVVGDVLVLTK 231 (412)
Q Consensus 185 ~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~-a~~GD~Iiltg 231 (412)
+|+.+.||.........-....+..+.++.+-...+ .++||.|+-..
T Consensus 19 lG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~in 66 (98)
T 1ihj_A 19 FGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66 (98)
T ss_dssp CCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEET
T ss_pred cCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEEC
Confidence 677777765433211112223344455555556667 99999998774
No 28
>2rps_A Chemokine; peptide, immune system; NMR {Pseudaletia separata}
Probab=24.47 E-value=33 Score=20.77 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=13.8
Q ss_pred cceecccCCCCcccccCCCCCCccC
Q psy4307 15 HVAQLELGSNPNELALRRPFDPVVH 39 (412)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (412)
||.-+.+.|= .....+||||.+|
T Consensus 10 ~M~~L~~gqC--~pTTEpPFd~dsY 32 (32)
T 2rps_A 10 GMQMLRSGQC--VATTEPPFDPDSY 32 (32)
T ss_dssp TEEECSSSCE--EESCCCCCCCCCC
T ss_pred CCceeccccc--CCCcCCCCCcCcC
Confidence 4554433333 2377889999776
No 29
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=22.24 E-value=80 Score=22.85 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=23.7
Q ss_pred eEEEEEccccHHHHHHHHHhcCCCceeEE
Q psy4307 353 GLLICLPREQAAAYCKDIEKQEGYQAWII 381 (412)
Q Consensus 353 glLi~v~~e~a~~~~~~l~~~~g~~a~vI 381 (412)
.+=+.|||+..+.|.+.|+++ ++++.++
T Consensus 48 ~vdI~V~p~~~~~f~~~L~~~-~I~y~Vl 75 (78)
T 2gjf_A 48 PVVILIPSDMVEWFLEMLKAK-GIPFTVY 75 (78)
T ss_dssp CEEEEECTTSHHHHHHHHHHH-TCCEEEE
T ss_pred eEEEEECHHHHHHHHHHHHHC-CCcEEEE
Confidence 367889999999999999997 8887664
No 30
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.69 E-value=1.1e+02 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=23.7
Q ss_pred cceEEEEEcc---ccHHHHHHHHHhcCCCceeEEE
Q psy4307 351 SGGLLICLPR---EQAAAYCKDIEKQEGYQAWIIG 382 (412)
Q Consensus 351 sGglLi~v~~---e~a~~~~~~l~~~~g~~a~vIG 382 (412)
-|.|++.++. ++.+++++.|+++ ++...++|
T Consensus 63 ~G~L~v~l~G~~~~~~~~ai~~L~~~-~v~vEvlg 96 (98)
T 3ced_A 63 VGFLVLHIPYISSVDFGKFEKELIER-QVKMEVLR 96 (98)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred EEEEEEEEeCCCHHHHHHHHHHHHHC-CCEEEEec
Confidence 4778888864 4567888899887 88777775
No 31
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=21.05 E-value=83 Score=23.91 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=26.1
Q ss_pred HcCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEec
Q psy4307 184 EAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTK 231 (412)
Q Consensus 184 ~~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg 231 (412)
.+|+.+.||.....-.+.-....+..+.++.+-. .+.++||.|+-..
T Consensus 20 glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vn 66 (107)
T 2h2b_A 20 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVN 66 (107)
T ss_dssp BTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEET
T ss_pred ccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEEC
Confidence 3678888765321100001122334455555555 7899999998774
No 32
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=20.15 E-value=1.1e+02 Score=22.17 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=23.8
Q ss_pred eEEEEEccccHHHHHHHHHhcCCCceeEE
Q psy4307 353 GLLICLPREQAAAYCKDIEKQEGYQAWII 381 (412)
Q Consensus 353 glLi~v~~e~a~~~~~~l~~~~g~~a~vI 381 (412)
.+=+.|||+....|.+.|+++ |++..++
T Consensus 40 ~~di~V~p~~~~~f~~~L~~~-~i~~~v~ 67 (79)
T 1vjq_A 40 PVVILIPSDMVEWFLEMLKAK-GIPFTVY 67 (79)
T ss_dssp CEEEEECGGGHHHHHHHHHHT-TCCEEEE
T ss_pred cEEEEECHHHHHHHHHHHHHC-CCcEEEE
Confidence 467789999999999999997 8887763
No 33
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=20.07 E-value=43 Score=24.99 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=25.1
Q ss_pred cCCeEEcccccccCceeEeEEEEEEecCCccccCCCCCCCCEEEEec
Q psy4307 185 AGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTK 231 (412)
Q Consensus 185 ~gv~ivGG~T~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~Iiltg 231 (412)
+|+.+.+|.....-...-....+..+.++.+-...+.++||.|+-..
T Consensus 16 lG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~in 62 (97)
T 2w4f_A 16 LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62 (97)
T ss_dssp SSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEET
T ss_pred eeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEEC
Confidence 56677666432100000111233344455555667799999998775
No 34
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=20.03 E-value=1e+02 Score=22.38 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=21.0
Q ss_pred eEEEEEEecCCccccC---CCCCCCCEEEEecccC
Q psy4307 203 GGVATTVCQPNEYIVP---DNAVVGDVLVLTKPLG 234 (412)
Q Consensus 203 ~~t~iG~~~~~~~~~~---~~a~~GD~Iiltg~lG 234 (412)
+++++++...++.+.+ ...++||.|++.++..
T Consensus 40 ~~~i~~I~R~~~~~~p~~~~~l~~GD~l~v~g~~~ 74 (86)
T 3jxo_A 40 DSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAE 74 (86)
T ss_dssp SEEEEEEEETTEEECCCTTCBCCTTCEEEEEEETT
T ss_pred CCEEEEEEECCEEECCCCCCEECCCCEEEEEECHH
Confidence 5566666555444333 3469999999998754
Done!