RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4307
(412 letters)
>gnl|CDD|232993 TIGR00476, selD, selenium donor protein. In prokaryotes, the
incorporation of selenocysteine as the 21st amino acid,
encoded by TGA, requires several elements: SelC is the
tRNA itself, SelD acts as a donor of reduced selenium,
SelA modifies a serine residue on SelC into
selenocysteine, and SelB is a selenocysteine-specific
translation elongation factor. 3-prime or 5-prime
non-coding elements of mRNA have been found as probable
structures for directing selenocysteine incorporation.
This model describes SelD, known as selenophosphate
synthetase, selenium donor protein, and selenide,water
dikinase. SelD provides reduced selenium for the
selenium transferase SelA. This protein itself contains
selenocysteine in many species; some member sequences
giving partial hits only may have selenocysteine residue
incorrectly interpreted as a stop codon upstream of the
given sequence. The SelD protein also provides
selenophosphate for the enzyme tRNA 2-selenouridine
synthase, which catalyzes a tRNA base modification. All
genomes with SelD should make selenocysteine,
selenouridine, or both.
Length = 347
Score = 397 bits (1022), Expect = e-138
Identities = 193/366 (52%), Positives = 244/366 (66%), Gaps = 25/366 (6%)
Query: 41 LDATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDS 100
D + RL R +LKG GCKVP +VL KLL+ LQ++ D++ + + D
Sbjct: 2 GDKSIRLTRLVELKGCGCKVPPDVLQKLLKGLQENHFVDDNQ---LVGAVMG------DD 52
Query: 101 AVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVST 160
AVI LRH GLSLVQTTD+ P+VDDPYMMG+IA +N LSD+YAMG T D +L+L+ VS
Sbjct: 53 AVIYLRHNGLSLVQTTDYITPIVDDPYMMGRIAAANALSDIYAMGGTPIDAMLILLGVSN 112
Query: 161 KMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDN 220
K+T + V+ +++GFKD+ EAGT++TGG T++NPW GG T VC E I P
Sbjct: 113 KLTIE----VMREVIQGFKDACREAGTSLTGGHTILNPWPVFGGAVTGVCPEEEVITPSG 168
Query: 221 AVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRI 280
A VGDVL+LTKPLGTQVAV H+WLD P L +++++V A ++++MARLNR
Sbjct: 169 AQVGDVLILTKPLGTQVAVAVHKWLDIP-----KDLSITKEEVELAINEAIENMARLNRK 223
Query: 281 AARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMF 340
AA LMH +NAH ATD+TGFG+LGHAQ +AK+ E VI NLPV+AKM ++K CGN F
Sbjct: 224 AAGLMHTFNAHAATDITGFGILGHAQNMAKNSNVEARIVIENLPVLAKMEELSKLCGNPF 283
Query: 341 QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGY----QAWIIGIVEKGNRTARIIDK 396
L+ G E GGLL CLPRE+AA C D K GY QA IIGIVEK T RIIDK
Sbjct: 284 GLMHGTCPEG-GGLLSCLPREKAALLC-DPIKSGGYLFGVQAEIIGIVEK-TATERIIDK 340
Query: 397 PRVIEV 402
PR+ EV
Sbjct: 341 PRIGEV 346
>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the
conversion of selenium to selenophosphate which is
required by a number of bacterial, archaeal and
eukaryotic organisms for synthesis of Secys-tRNA, the
precursor of selenocysteine in selenoenzymes. The
N-terminal domain of SelD is related to the ATP-binding
domains of hydrogen expression/formation protein HypE,
the AIR synthases, and FGAM synthase and is thought to
bind ATP.
Length = 287
Score = 326 bits (839), Expect = e-111
Identities = 122/335 (36%), Positives = 160/335 (47%), Gaps = 51/335 (15%)
Query: 50 FADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGG 109
F G G KV VL++LL L + +G G D+AV L GG
Sbjct: 4 FMKCAGCGAKVGPGVLSQLLAGLPLPTDPN----------LLVGLGTGDDAAVYRLP-GG 52
Query: 110 LSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDV 169
L+LVQTTDFF P+VDDPY+ G+IA +N LSD+YAMG + L +V + K+ ++
Sbjct: 53 LALVQTTDFFPPIVDDPYLFGRIAAANALSDIYAMGAK-PLSALAIVTLPRKL-PALQEE 110
Query: 170 VIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVL 229
V+ +L G KD EAG + GG T+ P G T + PN+ + A GDVL+L
Sbjct: 111 VLREILAGGKDKLREAGAVLVGGHTIEGPEPKYGLSVTGLVHPNKILRNSGAKPGDVLIL 170
Query: 230 TKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYN 289
TKPLGT + A +++SMARLNR AA L+ KY
Sbjct: 171 TKPLGTGILFAAEMAGLARGED---------------IDAALESMARLNRAAAELLRKYG 215
Query: 290 AHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAE 349
AH TDVTGFGLLGH +A+ + LP++ +
Sbjct: 216 AHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPLL----------------------Q 253
Query: 350 TSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIV 384
TSGGLL +P E AAA + K G A IIG V
Sbjct: 254 TSGGLLAAVPPEDAAA-LLALLKAGGPPAAIIGEV 287
>gnl|CDD|237611 PRK14105, PRK14105, selenophosphate synthetase; Provisional.
Length = 345
Score = 221 bits (566), Expect = 3e-69
Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 34/365 (9%)
Query: 46 RLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPL 105
+L L G CK+P L L++ + +E D +H ++G+G D+AVI
Sbjct: 7 KLTEMVKLHGUACKLPSTELENLVKGIILEE---DLKHT--------KVGLGDDAAVI-- 53
Query: 106 RHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEK 165
GL++V+T D F P+VDDPY+ GKIA N SD+YAMG++E +L+++ + ++ +
Sbjct: 54 IKNGLAIVKTVDVFTPIVDDPYIQGKIAACNSTSDVYAMGLSEIIGVLVILGIPPELPIE 113
Query: 166 ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGD 225
V ML+GF+D E T + GG T++NPW IGG T V + + + A GD
Sbjct: 114 ----VAKEMLQGFQDFCRENDTTIIGGHTILNPWPLIGGAVTGVGKEEDILTKAGAKEGD 169
Query: 226 VLVLTKPLGTQVAVNAHQWLDQPERWNRIKLI-VSEDDVRKAYQRSMDSMARLNRIAARL 284
VL+LTKPLGTQ A+ PE + LI +++++ ++++ M NR A
Sbjct: 170 VLILTKPLGTQSAMAL---SRVPEEFE--DLIDITKEEKEYIINKAIELMTTSNRYALLA 224
Query: 285 MHKYN-------AHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACG 337
+ + A+ TDVTGFG+LGH+Q +A+ V I LPVI ++ G
Sbjct: 225 LREAEEEVGEKIANAMTDVTGFGILGHSQEMAEQSN--VEIEISTLPVIKGTPELSSLFG 282
Query: 338 NMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKP 397
LL G+ AET+GGLLI + E +EK Y + +V+ G A++ +
Sbjct: 283 --HALLDGYGAETAGGLLISVKPEYKDKLIDKLEKNNVYAFEVGKVVKNGVGKAKLSENV 340
Query: 398 RVIEV 402
+++E+
Sbjct: 341 KILEI 345
>gnl|CDD|223781 COG0709, SelD, Selenophosphate synthase [Amino acid transport and
metabolism].
Length = 346
Score = 150 bits (382), Expect = 5e-42
Identities = 101/375 (26%), Positives = 163/375 (43%), Gaps = 61/375 (16%)
Query: 46 RLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIG--IGMDSAVI 103
RL +++ G GCK+ +VL ++L T + A + +G G D+AV
Sbjct: 7 RLTQYSHGAGCGCKISPKVLEQILH-----GTPAKPDFAKLL------VGNETGDDAAV- 54
Query: 104 PLRHG-GLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKM 162
G G S++ TTDFF P+VDDP+ G+IA +N +SD++AMG +M +A+
Sbjct: 55 -YDLGNGHSIISTTDFFMPIVDDPFDFGRIAATNAISDVFAMG----GKPIMAIAILGFP 109
Query: 163 TEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAV 222
+ + ++ G +D+ EAG A+ GG ++ P G T + + A
Sbjct: 110 NDLLDKEIAQEVIEGGRDACREAGIALAGGHSIDAPEPIFGLAVTGIVPTGKVKRNSTAK 169
Query: 223 VGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAA 282
G L+LTKPLG + A + K ++ E+ A +++M LN+I A
Sbjct: 170 AGCKLILTKPLGIGILTTAEK-----------KGLLKEEHKGLA----LENMCTLNKIGA 214
Query: 283 RLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVI--------AKMAAVAK 334
+ + TDVTGFGLLGH + +A + V + + P+ + +
Sbjct: 215 QFAPDFGVAAMTDVTGFGLLGHLKEMA--EGAGVDARLFDSPIPFLDGVEFYIENGIIPG 272
Query: 335 ACGNMF--------------QLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWI 380
F Q L +TSGGLLI + + +I + G Q I
Sbjct: 273 GTARNFGSYGIFAGKDLPEEQKLLLCDPQTSGGLLIAV-VPEGKGEGLEIAPELGIQLII 331
Query: 381 IG-IVEKGNRTARII 394
IG +V K ++
Sbjct: 332 IGELVAKQRALIEVL 346
>gnl|CDD|234870 PRK00943, PRK00943, selenophosphate synthetase; Provisional.
Length = 347
Score = 126 bits (320), Expect = 4e-33
Identities = 110/380 (28%), Positives = 170/380 (44%), Gaps = 74/380 (19%)
Query: 46 RLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGM----DSA 101
RL +++ G GCK+ +VL +L E A+ + P + +G D+A
Sbjct: 7 RLTQYSHGAGCGCKISPKVLETILA----SEQAKFVD---------PNLLVGNETRDDAA 53
Query: 102 VIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVA---- 157
V L + G ++ TTDFF P+VDDP+ G+IA +N +SD+YAMG +M +A
Sbjct: 54 VYDL-NDGTGIISTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGKP----IMAIAILGW 108
Query: 158 -VSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYI 216
++ E R+V+ G + + +AG + GG ++ P G T V P
Sbjct: 109 PINKLPPEVAREVL-----EGGRAACRQAGIPLAGGHSIDAPEPIFGLAVTGVVPPERVK 163
Query: 217 VPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMAR 276
A GD L LTKPLG + A E+ +++K E Y ++++M +
Sbjct: 164 RNATAQAGDKLFLTKPLGIGILTTA-------EKKSKLK---PEH-----YGLAIEAMCQ 208
Query: 277 LNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH--NLPVIAKMAA-VA 333
LNR A H TDVTGFGLLGH + Q ++ + +P++ + +A
Sbjct: 209 LNRPGADFAKLPGVHAMTDVTGFGLLGHLLEMC--QGAGLTARVDYAAVPLLPGVEEYIA 266
Query: 334 KAC-----GNMF--------QLLQGHSA-----ETSGGLLI-CLPREQAAAYCKDIEKQE 374
+ C G F +L A +TSGGLL+ P +A A I +
Sbjct: 267 QGCVPGGTGRNFASYGHLIGELPDEQRALLCDPQTSGGLLVAVAP--EAEAEVLAIAAEH 324
Query: 375 GYQAWIIG-IVEKGNRTARI 393
G + IG +VE AR+
Sbjct: 325 GIELAAIGELVEARGGRARV 344
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
function of the C-terminal domain of AIR synthase is
unclear, but the cleft formed between N and C domains is
postulated as a sulphate binding site.
Length = 150
Score = 68.9 bits (169), Expect = 5e-14
Identities = 37/173 (21%), Positives = 59/173 (34%), Gaps = 24/173 (13%)
Query: 223 VGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAA 282
GDVL+L G + + K + + V ++ + + A
Sbjct: 2 PGDVLILLGSSGLHGSGLSLVR----------KGLEDDGAVPLGDPLLEPTLIYVVLLLA 51
Query: 283 RLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQL 342
L A D+TG GL G +A + V I + V + L
Sbjct: 52 AL---GLVKAAHDITGGGLAGALAEMA--PASGVGAEID-------LDKVPIFEELLLPL 99
Query: 343 LQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIID 395
S E G L+ + E+A A I ++EG A +IG V G ++
Sbjct: 100 EMLFS-ENQGRGLVVVVPEEAEA-VLAILEEEGLPAAVIGEVTAGGGLTLVVK 150
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 298
Score = 71.9 bits (177), Expect = 5e-14
Identities = 80/336 (23%), Positives = 139/336 (41%), Gaps = 55/336 (16%)
Query: 59 KVPQEVLAKLLE---CLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQT 115
K+P E L +L+ +DE + G G D+AV+ GG LV +
Sbjct: 4 KLPPEFLKRLILKNLGADRDEV-------------LVGPGGGEDAAVV--DFGGKVLVVS 48
Query: 116 TDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLML 175
TD P+ G +A +D+ G LL+ + + E+E + ++
Sbjct: 49 TD---PITGAGKDAGWLAVHIAANDIATSGA-RPRWLLVTLLLPPGTDEEE----LKAIM 100
Query: 176 RGFKDSALEAGTAVTGGQTVVNPWCT---IGGVATTVCQPNEYIVPDNAVVGDVLVLTKP 232
R ++A E G ++ GG T V P T I A + ++ + P A GD +V+TK
Sbjct: 101 REINEAAKELGVSIVGGHTEVTPGVTRPIISVTAIGKGEKDKLVTPSGAKPGDDIVMTKG 160
Query: 233 LGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQR-SMDSMARLNRIAARL----MHK 287
G + + + +K +SE+++R+A + S+ + IAA MH
Sbjct: 161 AGIEGT-----AILANDFEEELKKRLSEEELREAAKLFYKISVVKEALIAAEAGVTAMH- 214
Query: 288 YNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACG-NMFQLLQGH 346
D T G+LG +A+ + +P+ + + +A G + +L+
Sbjct: 215 -------DATEGGILGALWEVAEASGVGLRIEKDKIPIRQETKEICEALGIDPLRLI--- 264
Query: 347 SAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIG 382
+SG LLI +P E+ +E+ G A +IG
Sbjct: 265 ---SSGTLLITVPPEKGDELVDALEE-AGIPASVIG 296
>gnl|CDD|223386 COG0309, HypE, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 339
Score = 68.5 bits (168), Expect = 9e-13
Identities = 79/374 (21%), Positives = 130/374 (34%), Gaps = 59/374 (15%)
Query: 54 KGRGCKVPQEVLAKLLECLQQDETAQDHEHAHF-MHMAIPRIGIGMDSAVIPLRHGGLSL 112
G G K+ QE++ K++ +F + G D+A+I L G L
Sbjct: 7 HGAGGKLMQELINKVIL-------------PNFGRRDVNVGLANGEDAAIIDL--GDGVL 51
Query: 113 VQTTDFFY--PLVDDPYMMGKIACSNVLSDLYAMGVTEC-DNLLMLVAVSTKMTEKERDV 169
TTD F PL +GK+A +D+ G ++ +++ + + ER
Sbjct: 52 AFTTDPFVIDPLFFPGGDIGKLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLER-- 109
Query: 170 VIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVC----QPNEYIVPDNAVVGD 225
+L+ + A EAG ++ G T V P V T + P A GD
Sbjct: 110 ----ILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVINTTGIGIIDKEILVSPSGARPGD 165
Query: 226 VLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAY--QRSMDSMARLNRIAAR 283
+++T +G A + ++ + D A + + + A
Sbjct: 166 AVIVTGTIGIHGA-----SILAHRFGEELETELGSDCAPLAKLVKALLSVVGEALAAAVT 220
Query: 284 LMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH--NLPVIAKMAAVAKACGNMFQ 341
MH D T GL G +A+ + V I +PV V C +
Sbjct: 221 AMH--------DATRGGLAGALNEMAE--ASGVGISIEEEKIPV---REEVRGVC-ELLG 266
Query: 342 LLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDK---PR 398
L A G L+I +P E A + + A IIG V + + R
Sbjct: 267 LDPLELA-NEGKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGLETAGGGKR 325
Query: 399 VIEVPAKEKDGELW 412
++E P + L
Sbjct: 326 ILEPPEGD---PLP 336
>gnl|CDD|216008 pfam00586, AIRS, AIR synthase related protein, N-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
N-terminal domain of AIR synthase forms the dimer
interface of the protein, and is suggested as a putative
ATP binding domain.
Length = 96
Score = 63.3 bits (155), Expect = 1e-12
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 97 GMDSAVIPLRHGGLSLVQTTDFF----YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNL 152
G D+AVI L G LV TTD + DPY G A + LSDL AMG L
Sbjct: 1 GDDAAVIRLGEGKA-LVVTTDGVVTHVHFAAIDPYDGGATAVAGNLSDLAAMGAKP---L 56
Query: 153 LMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQT 194
+L ++ + ++RG ++A E G + GG T
Sbjct: 57 ALLDGLALGEGLDPEWLE--EIVRGIAEAANEFGVPLVGGDT 96
>gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual
role in de novo biosynthesis and in salvage of exogenous
thiamine. Thiamine salvage occurs in two steps, with
thiamine kinase catalyzing the formation of thiamine
phosphate, and ThiL catalyzing the conversion of this
intermediate to thiamine pyrophosphate. The N-terminal
domain of ThiL binds ATP and is related to the
ATP-binding domains of hydrogen expression/formation
protein HypE, the AIR synthases, FGAM synthase and
selenophosphate synthetase (SelD).
Length = 291
Score = 64.1 bits (157), Expect = 2e-11
Identities = 73/311 (23%), Positives = 109/311 (35%), Gaps = 39/311 (12%)
Query: 84 AHFMHMAIPRIGIGMDSAVIPLRHGGL-----SLVQTTDFFYPLVDDPYMMG-KIACSNV 137
+GIG D+AV+ G L +LV+ F P P +G K N
Sbjct: 11 KRLGAGPGVLLGIGDDAAVLKPPGGRLVVTTDTLVEGVHF--PPDTTPEDIGWKALAVN- 67
Query: 138 LSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVN 197
LSDL AMG L+ + + E+ + RG ++A G + GG T
Sbjct: 68 LSDLAAMGARPLG-FLLSLGLPPDTDEEWLEEFY----RGLAEAADRYGVPLVGGDTTSG 122
Query: 198 PWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLI 257
I A + + + A GD+L +T LG A L L
Sbjct: 123 SELVISVTALGEVEKGKPLRRSGAKPGDLLYVTGTLGD--AAAGLALLLG-------GLK 173
Query: 258 VSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVS 317
+ E+ + +R + RL R + + A D++ GLL +A+ + V
Sbjct: 174 LPEELYEELIERHLRPEPRLE--LGRALAEGLATAMIDISD-GLLADLGHIAE--ASGVG 228
Query: 318 FVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGG---LLICLPREQAAAYCKDIEKQE 374
VI + A A G A + G LL +P E A A +
Sbjct: 229 AVIDLDKLPLSPALRAAELG----EDALELALSGGEDYELLFTVPPENAEA----AAAKL 280
Query: 375 GYQAWIIGIVE 385
G +IG V
Sbjct: 281 GVPVTVIGRVT 291
>gnl|CDD|223684 COG0611, ThiL, Thiamine monophosphate kinase [Coenzyme metabolism].
Length = 317
Score = 57.7 bits (140), Expect = 2e-09
Identities = 71/320 (22%), Positives = 121/320 (37%), Gaps = 42/320 (13%)
Query: 92 PRIGIGMDSAVIPLRHGGLSLVQTTDFF-----YPLVDDPYMMGKIACSNVLSDLYAMGV 146
+GIG D+A++ G LV TTD +P P +G A + LSDL AMG
Sbjct: 21 VVLGIGDDAALVDAPEGQ-RLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMGA 79
Query: 147 TECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVA 206
L+ + + + E+ + + G ++A + G + GG T P +I A
Sbjct: 80 RP-KAFLLSLGLPPDLDEEWLEALA----DGIFEAAKKYGVKLIGGDTNRGPL-SISVTA 133
Query: 207 TTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKA 266
V ++ A GD++ +T LG + E + E+++ +
Sbjct: 134 IGVLPKGRALLRSGAKPGDLVAVTGTLGR--SAAGL------ELLLNVLGPEDEEELIER 185
Query: 267 YQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHN--LP 324
+ R R+ + K A A D++ GL +A + + V VI LP
Sbjct: 186 HLR---PTPRVE--LGLALAKL-ASAAMDISD-GLAADLGHIA--RASGVGIVIDEDLLP 236
Query: 325 VIAKMAAVAKACGNMFQLLQGHSAETSGG---LLICLPREQAAAYCKDIEKQEGYQAWII 381
+ + G+ + A + G L+ +P E A D + G II
Sbjct: 237 LSDAVLEALDELGDPLEW-----ALSGGEDYELVFTVPEENREAL-LDALRSLGVT--II 288
Query: 382 GIVEKGNRTARIIDKPRVIE 401
G V +G ++D +
Sbjct: 289 GRVTEGEGVVVLVDGKELTL 308
>gnl|CDD|233387 TIGR01379, thiL, thiamine-monophosphate kinase. This model
describes thiamine-monophosphate kinase, an enzyme that
converts thiamine monophosphate into thiamine
pyrophosphate (TPP, coenzyme B1), an enzyme cofactor.
Thiamine monophosphate may be derived from de novo
synthesis or from unphosphorylated thiamine, known as
vitamin B1. Proteins scoring between the trusted and
noise cutoff for this model include short forms from the
Thermoplasmas (which lack the N-terminal region) and a
highly derived form from Campylobacter jejuni.
Eukaryotes lack this enzyme, and add pyrophosphate from
ATP to unphosphorylated thiamine in a single step
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 317
Score = 56.9 bits (138), Expect = 5e-09
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 24/209 (11%)
Query: 95 GIGMDSAVIPLRHGGL------SLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTE 148
GIG D+A++ G +LV+ F P P +G A + LSDL AMG T
Sbjct: 22 GIGDDAALVSAPEGRDLVLTTDTLVEGVHF--PPDTTPEDLGWKAVAVNLSDLAAMGATP 79
Query: 149 CDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATT 208
L+ + + + + E + G ++A + G + GG TV +P + A
Sbjct: 80 -KWFLLSLGLPSDLDEAWLEA----FYDGLFEAAKQYGVPLVGGDTVSSPELVVTVTAIG 134
Query: 209 VCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQ 268
++ A GD++ +T LG A A + K E+D Q
Sbjct: 135 EAPKGRALLRSGAKPGDLVFVTGTLGDSAAGLAL--------LLKGKKEPDEEDDEALLQ 186
Query: 269 RSMDSMARLNRIAARLMHKYNAHGATDVT 297
R + R+ + Y A+ A DV+
Sbjct: 187 RHLRPEPRVE--EGLALAGY-ANAAIDVS 212
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal domain
of AIR synthase forms the dimer interface of the
protein, and is suggested as a putative ATP binding
domain.
Length = 222
Score = 44.7 bits (106), Expect = 3e-05
Identities = 57/281 (20%), Positives = 96/281 (34%), Gaps = 67/281 (23%)
Query: 111 SLVQTTDFFYPLVD-DPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDV 169
SL +TD P + +P+ G++A ++D+ AMG + +++ +V
Sbjct: 1 SLAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGA------RPIALLASLSLSNGLEV 54
Query: 170 VI--PLMLRGFKDSALEAGTAVTGGQTVVNPWCT-----IGGVATTVCQPNEYIVPDNAV 222
I ++ G ++ + G + GG T V+P + A V + + I A
Sbjct: 55 DILEDVVD-GVAEACNQLGVPIVGGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGAR 113
Query: 223 VGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAA 282
GDVL+LT
Sbjct: 114 PGDVLILTG----------------------------------------------VDAVL 127
Query: 283 RLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQL 342
L+ + H D+T GLLG LA+ + +P+ + + L
Sbjct: 128 ELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALL 187
Query: 343 LQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGI 383
+SGGLLI +P E+A A + G A +IG
Sbjct: 188 F-----NSSGGLLIAVPAEEADAV-LLLLNGNGIDAAVIGR 222
>gnl|CDD|225055 COG2144, COG2144, Selenophosphate synthetase-related proteins
[General function prediction only].
Length = 324
Score = 45.1 bits (107), Expect = 4e-05
Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 51/302 (16%)
Query: 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYP--LVDDPYMMGKIACSNVL--SDLYAMGVTEC 149
+ G D+AVI + G L+ D + + DP+ G CS ++ +D+ AMG E
Sbjct: 40 LDFGDDAAVIRV--GDGKLLIAADGIWGKLIDADPWWAG--YCSVLVNVNDVAAMG-GEP 94
Query: 150 DNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVN-PWCTIGGVATT 208
+ + A+S K ++ R++ L G + A + G + GG T + P+C + V
Sbjct: 95 --VGAVDAISAKSEDQAREI-----LEGLRKGARKFGVPIVGGHTHPDTPYCVLDVVIGG 147
Query: 209 VCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQ 268
+ I A GD+L+ L + N P W+ + ++ ++
Sbjct: 148 LIAEEPIITSGTAKPGDLLIFVGDLDGKPYPNF------PLNWD-----TTTMKAKEKFR 196
Query: 269 RSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAK 328
++ + ++ A DV+ GLLG L E S +
Sbjct: 197 AQLELLREGAKLV-------KA--GKDVSNGGLLGTLLMLL-----EKS----RVGAGVD 238
Query: 329 MAAVAK-ACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKG 387
+ ++ A + Q L+ + G ++ + E D+ ++EG A +IG V +
Sbjct: 239 LDSIPYPADVDFRQWLKRY---PGSGFVLTVDPEDVEE-VVDVFEEEGCPATVIGEVIEE 294
Query: 388 NR 389
Sbjct: 295 PV 296
>gnl|CDD|235583 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.
Length = 318
Score = 42.1 bits (100), Expect = 3e-04
Identities = 75/310 (24%), Positives = 114/310 (36%), Gaps = 45/310 (14%)
Query: 92 PRIGIGMDSAVIPLRHGGLSLVQTTD------FFYPLVDDPYMMG-KIACSNVLSDLYAM 144
+GIG D+A++ G LV +TD F P P +G K N LSDL AM
Sbjct: 20 RELGIGDDAALLGPPPGQ-RLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVN-LSDLAAM 77
Query: 145 GVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGG 204
G L+A++ + + + L G + A G + GG T P +I
Sbjct: 78 GARP---AAFLLALALP-KDLDEAWLEALA-DGLFELADRYGAELIGGDTTRGPDLSISV 132
Query: 205 VATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDD-V 263
A + A GD++ +T LG A A L N +++ ++ +
Sbjct: 133 TAIGDVPGGRALRRSGAKPGDLVAVTGTLGDSAAGLAL-LL------NGLRVPDADAAAL 185
Query: 264 RKAYQRSMDSMARLN--RIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH 321
+ R R+ + A L A A D++ GL +A+ + V I
Sbjct: 186 ISRHLR---PQPRVGLGQALAGL-----ASAAIDISD-GLAADLGHIAE--ASGVGADI- 233
Query: 322 NLPVIAKMAAVAKACGNMFQLLQGHSAETSGG----LLICLPREQAAAYCKDIEKQEGYQ 377
+L + A+ +A L+ SGG LL P E A G
Sbjct: 234 DLDALPISPALREAAEGE-DALR---WALSGGEDYELLFTFPPENRGA-LLAAAGHLGVG 288
Query: 378 AWIIGIVEKG 387
IIG V +G
Sbjct: 289 VTIIGRVTEG 298
>gnl|CDD|132311 TIGR03267, methan_mark_2, putative methanogenesis marker protein 2.
A single member of this protein family is found in each
of the first ten complete genome sequences of archaeal
methanogens, and nowhere else. Sequence similarity to
various bacterial proteins is reflected in Pfam models
pfam00586 and pfam02769, AIR synthase related protein
N-terminal and C-terminal domains, respectively. The
functions of proteins in this family are unknown, but
their role is likely one essential to methanogenesis
[Energy metabolism, Methanogenesis].
Length = 323
Score = 36.7 bits (85), Expect = 0.018
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 28/212 (13%)
Query: 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYPLVD-DPYMMGKIACSNVLSDLYAMGVTECDNL 152
+ G D+A I + + L+ + L+D DP+ G A ++D+ AMG + +
Sbjct: 41 VDFGDDAAAIKIGGDDILLLAADGIWGKLLDADPWWAGYCAVLVNVNDIAAMG-GKP--V 97
Query: 153 LMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATT-VCQ 211
M+ +S + R+V L G ++ A + G V GG T + VA + +
Sbjct: 98 GMVNVLSINDVDVCREV-----LEGMREGAWKFGVPVVGGHTHPDTPYNALDVAIVGIAK 152
Query: 212 PNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSM 271
+ I D A GD+++ L + + P W+ + S D +R M
Sbjct: 153 EDCIIRSDTAKPGDLIIFAIDLDGRPYPSF------PLNWDTTTM-KSPDYLR----AQM 201
Query: 272 DSMARLNRIAARLMHKYNAHGATDVTGFGLLG 303
D++ IA R + D++ GL+G
Sbjct: 202 DAVV---EIAERKL----VKAGKDISNPGLIG 226
>gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup
3 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 283
Score = 35.6 bits (83), Expect = 0.037
Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 33/164 (20%)
Query: 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYP-LVD-DPYMMGKIACS---NVLSDLYAMGVTE 148
+G D+A IP G L+ D +P LV+ DP+ G CS NV SD+ AMG
Sbjct: 32 ADLGDDAAAIP--DGDGYLLLAADGIWPSLVEADPWWAG--YCSVLVNV-SDIAAMGGRP 86
Query: 149 CDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP-------WCT 201
L M+ A+ + E V L G +D+A + G + GG T +P
Sbjct: 87 ---LAMVDALWSPSAEAAAQV-----LEGMRDAAEKFGVPIVGGHT--HPDSPYNALSVA 136
Query: 202 IGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAH-QW 244
I G A ++ A GD L+L L +V + W
Sbjct: 137 ILGRARKDL-----LISFGAKPGDRLILAIDLDGRVHPSPPPNW 175
>gnl|CDD|233738 TIGR02124, hypE, hydrogenase expression/formation protein HypE.
This family contains HypE (or HupE), a protein required
for expression of catalytically active hydrogenase in
many systems. It appears to be an accessory protein
involved in maturation rather than a regulatory protein
involved in expression. HypE shows considerable homology
to the thiamine-monophosphate kinase ThiL (TIGR01379)
and other enzymes.
Length = 320
Score = 34.9 bits (81), Expect = 0.058
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 32/167 (19%)
Query: 80 DHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYM-----MGKIAC 134
+E M D+AV+ L G L +TD F V DP +GK+A
Sbjct: 14 GNEILAAME----------DAAVLEL--SGGRLAFSTDSF---VVDPLFFPGGDIGKLAV 58
Query: 135 SNVLSDLYAMGVTECD-NLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQ 193
++D+ G + ++ + + ER +++ ++A +AG + G
Sbjct: 59 CGTVNDVAVSGAKPLYLSCGFILEEGFPIEDLER------IVKSMAEAARKAGVKIVTGD 112
Query: 194 T-VVNPWCTIGGVATTVC----QPNEYIVPDNAVVGDVLVLTKPLGT 235
T VV G T I N GD ++++ +G
Sbjct: 113 TKVVEKGKADGIFINTTGIGVIPSGIPISAHNLQPGDKIIVSGTIGD 159
>gnl|CDD|223228 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase
[Nucleotide transport and metabolism].
Length = 345
Score = 33.3 bits (77), Expect = 0.18
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARII 394
G+++ +P E A + K++G A++IG VE G +
Sbjct: 302 GMVLIVPEEDAEKALA-LLKEQGETAYVIGRVEAGEGEVVGV 342
Score = 28.3 bits (64), Expect = 8.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 163 TEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGG---VATT---VCQPNEYI 216
T K V +++G + +AG A+ GG+T P GG +A V + +E I
Sbjct: 108 TGKLDPEVAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEII 167
Query: 217 VPDNAVVGDVLV 228
GDV++
Sbjct: 168 DGSKVKEGDVII 179
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 840
Score = 34.0 bits (78), Expect = 0.18
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 243 QWLDQP--------ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARL 284
+WL +P R + +++++ +R+ + + + L R+AAR+
Sbjct: 291 RWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARV 340
>gnl|CDD|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic
diacylglycerol kinase [Lipid metabolism / General
function prediction only].
Length = 301
Score = 32.3 bits (74), Expect = 0.35
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 55 GRGCKVPQEVLAKLLECLQQDET-----AQDHEHAHFMHMAIPRIGIGMDSAVI 103
R +P + + LE ++ ET Q + +F++ A GIG D+ V+
Sbjct: 98 ARALGIPLDDIEAALELIKSGETRKVDLGQVNGRRYFINNA----GIGFDAEVV 147
>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional.
Length = 183
Score = 31.3 bits (71), Expect = 0.57
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 22/68 (32%)
Query: 179 KDSALEAGTAVT-------GGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTK 231
++S E G VT GG+ V+NP TIG DN VV V+TK
Sbjct: 120 RNSGAELGKPVTIGNNVWIGGRAVINPGVTIG---------------DNVVVASGAVVTK 164
Query: 232 PLGTQVAV 239
+ V V
Sbjct: 165 DVPDNVVV 172
>gnl|CDD|100036 cd02691, PurM-like2, AIR synthase (PurM) related protein, archaeal
subgroup 2 of unknown function. The family of PurM
related proteins includes Hydrogen expression/formation
protein HypE, AIR synthases, FGAM synthase and
Selenophosphate synthetase (SelD). They all contain two
conserved domains and seem to dimerize. The N-terminal
domain forms the dimer interface and is a putative ATP
binding domain.
Length = 346
Score = 31.6 bits (72), Expect = 0.80
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 40/199 (20%)
Query: 218 PDNAVVGDVLVLTKPLGT-QVAVNA--HQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSM 274
NA GD++++T+ G + A H D E + I KA + DS
Sbjct: 157 RKNAEPGDLILMTEGAGGGTITTTAIYHGMPDVVEETLNVDFI-------KACEALRDSG 209
Query: 275 ARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAK 334
++++ H TDVT G+ G A ++K VS V V + +
Sbjct: 210 L-VSKV----------HSMTDVTNGGIRGDALEISK--TAGVSLVFDEEKV---RSLINP 253
Query: 335 ACGNMFQLLQ----GHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRT 390
M + L G S ++ L+I P E A ++ G +A +G VE+G
Sbjct: 254 KVLKMLEELGIDPLGVSLDS---LMIIAPEEDAVD-IIRTLREAGVRADEVGRVEEGRGV 309
Query: 391 ARIID------KPRVIEVP 403
++ KP E
Sbjct: 310 PLVVTGEGRELKPAFRESA 328
>gnl|CDD|224884 COG1973, HypE, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 449
Score = 30.5 bits (69), Expect = 1.6
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 20/124 (16%)
Query: 291 HGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQ----GH 346
H TDVT G+ G A ++K VS V V + + M + L G
Sbjct: 290 HSMTDVTNGGIRGDALEISKTAG--VSLVFDEEKV---RSLINPKVLKMLEELNIDPLGV 344
Query: 347 SAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIID-------KPRV 399
S ++ L+I P E A K + G +A +G VE+G + ++D KPR
Sbjct: 345 SIDS---LMIIAP-EDVADLVKKALRGAGVRAEEVGRVEEGGQGVILVDGGEERELKPRF 400
Query: 400 IEVP 403
E
Sbjct: 401 RESA 404
>gnl|CDD|100032 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR]
synthetase), one of eleven enzymes required for purine
biosynthesis, catalyzes the conversion of
formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
ADP, and Pi, the fifth step in de novo purine
biosynthesis. The N-terminal domain of PurM is related
to the ATP-binding domains of hydrogen
expression/formation protein HypE, the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP.
Length = 297
Score = 29.8 bits (68), Expect = 2.3
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 385
G+++ + E A + +EK G +A++IG V
Sbjct: 266 GMVLIVSEEDADEVLEILEKL-GEKAYVIGEVV 297
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 28.9 bits (65), Expect = 6.8
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 217 VPDNAVVGDV-LVLTKPL----GTQVAVNAHQWLDQPERWNR 253
PD +VGDV VL K L WL++ RW +
Sbjct: 333 RPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQ 374
>gnl|CDD|235299 PRK04443, PRK04443, acetyl-lysine deacetylase; Provisional.
Length = 348
Score = 28.4 bits (64), Expect = 7.2
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
Query: 361 EQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVI-----------EVPAKEKDG 409
AA + + + G +AW+ E GN D P ++ ++P + +DG
Sbjct: 26 AAAAEFLVEFMESHGREAWVD---EAGNARGPAGDGPPLVLLLGHIDTVPGDIPVRVEDG 82
Query: 410 ELW 412
LW
Sbjct: 83 VLW 85
>gnl|CDD|211560 TIGR00188, rnpA, ribonuclease P protein component, eubacterial.
This peptide is the protein component of a
ribonucleoprotein that cleaves the leader sequence from
each tRNA precursor to leave the mature 5'-terminus. The
catalytic site is in the RNA component, M1 RNA. The
yeast mitochondrial RNase P protein component gene RPM2
has no obvious sequence similarity to rnpA, but
resembles eukaryotic nuclear RNase P instead
[Transcription, RNA processing].
Length = 111
Score = 26.9 bits (60), Expect = 7.6
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 239 VNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLM 285
+ + ++ + R+ L VS+ V+ A +R+ + RL R R
Sbjct: 28 LTIYVLKNELDHP-RVGLSVSKKKVKNAVERNR--IKRLIREVFRER 71
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
Length = 854
Score = 28.5 bits (65), Expect = 8.2
Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 243 QWLDQP--------ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARL 284
+WL +P R + ++ ++ + +R+ + + + L R+ +R+
Sbjct: 305 RWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRI 354
>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase.
Alternate name: phosphoribosylformylglycinamidine
cyclo-ligase; AIRS; AIR synthase This enzyme is found as
a homodimeric monofunctional protein in prokaryotes and
as part of a larger, multifunctional protein, sometimes
with two copies of this enzyme in tandem, in eukaryotes
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 332
Score = 28.1 bits (63), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKG 387
G ++ +P E+ + + G +AW+IG V+KG
Sbjct: 299 GFVVIVPEEEVDKALALLNAR-GEKAWVIGEVKKG 332
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 28.0 bits (63), Expect = 9.9
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 191 GGQTVVNPWC---------TIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNA 241
G +V PWC ++GG T C N + AV V +LT PL +N+
Sbjct: 322 GDMGLVVPWCDQLKVLCHSSVGGFWTH-CGWNSTL---EAVFAGVPMLTFPLFWDQPLNS 377
Query: 242 HQWLD------QPERWNRIKLIVSEDDVRKAYQRSMDS 273
++ + +R + +V +++ + +R MD
Sbjct: 378 KLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDL 415
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,883,390
Number of extensions: 2022743
Number of successful extensions: 1695
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1650
Number of HSP's successfully gapped: 40
Length of query: 412
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 313
Effective length of database: 6,546,556
Effective search space: 2049072028
Effective search space used: 2049072028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)