RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4307
(412 letters)
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
ATP-binding, nucleotide-binding, selenium, transferase;
HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Length = 394
Score = 460 bits (1185), Expect = e-162
Identities = 269/381 (70%), Positives = 323/381 (84%), Gaps = 6/381 (1%)
Query: 28 LALRRPFDPVVHDLDATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFM 87
++ R F+P ++LD +FRL RF +LKG GCKVPQ+VL KLLE LQ++ +D F+
Sbjct: 3 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQED---EQFL 59
Query: 88 HMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVT 147
+PR+GIGMD+ VIPLRHGGLSLVQTTD+ YP+VDDPYMMG+IAC+NVLSDLYAMGVT
Sbjct: 60 GAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVT 119
Query: 148 ECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVAT 207
ECDN+LML+ VS KMT++ERD V+PL+++GFKD+A EAGT+VTGGQTV+NPW +GGVAT
Sbjct: 120 ECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVAT 179
Query: 208 TVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAY 267
TVCQPNE+I+PDNAV GDVLVLTKPLGTQVAV HQWLD PE+WN+IKL+V+++DV AY
Sbjct: 180 TVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAY 239
Query: 268 QRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIA 327
Q +M +MARLNR AA LMH +NAH ATD+TGFG+LGHAQ LAK Q+NEVSFVIHNLPV+A
Sbjct: 240 QEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLA 299
Query: 328 KMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEK---QEGYQAWIIGIV 384
KMAAV+KACGNMF L+ G ETSGGLLICLPREQAA +C +I+ EG+QAWIIGIV
Sbjct: 300 KMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIV 359
Query: 385 EKGNRTARIIDKPRVIEVPAK 405
EKGNRTARIIDKPR+IEV +
Sbjct: 360 EKGNRTARIIDKPRIIEVAPQ 380
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase,
structural genomics, NPPSFA; 1.98A {Aquifex aeolicus}
PDB: 2yye_A* 2zod_A 2zau_A
Length = 345
Score = 338 bits (870), Expect = e-115
Identities = 91/363 (25%), Positives = 143/363 (39%), Gaps = 54/363 (14%)
Query: 46 RLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPL 105
L + G KV L ++L+ + IG D+ V
Sbjct: 12 ELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDES------------TLVSIGDDAGVY-- 57
Query: 106 RHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEK 165
H G+ V T D P+V+DPY+ G I+ +N LSD+YAMG + L + + ++ +
Sbjct: 58 EHNGIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCFNNCELDIE 117
Query: 166 ERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGD 225
+ ++RG D EA T + GG T+ + G +C +YI A VG
Sbjct: 118 ----IFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGKYITQSGAQVGQ 173
Query: 226 VLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLM 285
+L+LTKP+GT + + + E ++++M LN A LM
Sbjct: 174 LLILTKPIGTGILIKGLKEGILKEED---------------INEAIENMLALNDKARNLM 218
Query: 286 HKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAK----------- 334
+A TDVTGFGLLGHA + K+ +P + K
Sbjct: 219 LSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIEN 278
Query: 335 ---------ACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVE 385
+ + ++L+ TSGGLL + +E+ + K+ WIIG
Sbjct: 279 LNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETA-KELEVNYWIIGETI 337
Query: 386 KGN 388
N
Sbjct: 338 AEN 340
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate
synthesis, transferase; 2.25A {Escherichia coli}
Length = 347
Score = 323 bits (830), Expect = e-109
Identities = 86/373 (23%), Positives = 138/373 (36%), Gaps = 49/373 (13%)
Query: 42 DATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSA 101
+ + RL +++ G GCK+ +VL +L Q + + D+A
Sbjct: 3 ENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPN---------LLVGNETRDDAA 53
Query: 102 VIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTK 161
V L G S++ TTDFF P+VD+P+ G+IA +N +SD++AMG + +L
Sbjct: 54 VYDL-GNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAIAIL----GW 108
Query: 162 MTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNA 221
K + + G + + +AG A+ GG ++ P G T + A
Sbjct: 109 PINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTERVKKNSTA 168
Query: 222 VVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIA 281
G L LTKPLG V A + + + M R+N
Sbjct: 169 QAGCKLFLTKPLGIGVLTTAEKKSLLKPEH---------------QGLATEVMCRMNIAG 213
Query: 282 ARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVI------AKMAAVAKA 335
A + TDVTGFGLLGH + + + +P + K+ AV
Sbjct: 214 ASFANIEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGG 273
Query: 336 CGNMFQLLQGH-------------SAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIG 382
F +TSGGLL+ + E + G + IG
Sbjct: 274 TERNFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATA-AEFGIELTAIG 332
Query: 383 IVEKGNRTARIID 395
+ +++
Sbjct: 333 ELVPARGGRAMVE 345
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 149 bits (379), Expect = 7e-42
Identities = 64/368 (17%), Positives = 128/368 (34%), Gaps = 52/368 (14%)
Query: 55 GRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQ 114
G G ++ +E+L ++ + + D A IP G +V
Sbjct: 10 GAGGEIMEELLRDVI-----------LKTLTLKSAGGIGLDALDDGATIPF--GDKHIVF 56
Query: 115 TTDFFY--PLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVVIP 172
T D PL +G++A S ++DL MG L + + + + +
Sbjct: 57 TIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMGAEPIA-LANSMIIGEGLDMEV----LK 111
Query: 173 LMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATT-VCQPNEYIVPDNAVVGDVLVLTK 231
+L+ ++A E + G T V V T + + A VGD ++++
Sbjct: 112 RVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVITAGIGIAEHPVSDAGAKVGDAVLVSG 171
Query: 232 PLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAH 291
+G + + + + + + A + N H
Sbjct: 172 TIGDHGIA--------------LMSHREGIAFETELKSDVAPIWDVVKAVAETIGWENIH 217
Query: 292 GATDVTGFGLLGHAQTLAKHQKNEVSFVIH--NLPVIAKMAAVAKACGNMFQLLQGHSAE 349
D T GL +A +K+ V ++ ++P+ ++ A ++ G + +
Sbjct: 218 AMKDPTRAGLSNALNEIA--RKSNVGILVREADIPIRPEVRAASEMLG-----ISPYDVA 270
Query: 350 TSGGLLICLPREQAAAYCKDIEKQE-GYQAWIIGIVEKGNRTARIIDKP----RVIEVPA 404
G +++ + RE A + + K E G A IIG V R +++ R +E P
Sbjct: 271 NEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLLETGIGGKRFMEPPE 330
Query: 405 KEKDGELW 412
+ +
Sbjct: 331 GD---PVP 335
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 80.0 bits (198), Expect = 6e-17
Identities = 58/333 (17%), Positives = 112/333 (33%), Gaps = 57/333 (17%)
Query: 92 PRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMM-----GKIACSNVLSDLYAMGV 146
I D+A++ + TTD P GK+A ++D G
Sbjct: 15 EYIRAMEDAALLFGN-----ITLTTD---SFTVKPLFFPGGDIGKLAVCGTVNDASMRGA 66
Query: 147 TECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVA 206
+ L + ++ ++ + ++A EAG + G T V ++ +
Sbjct: 67 -KPLFLTAAFIIEEGFPVEDLKKIV----KSMAEAAKEAGVKIVAGDTKVVEKGSVDRIF 121
Query: 207 TTVC-----QPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSED 261
+ NA GD+++++ +G H + ++ + +
Sbjct: 122 INTSGIGVLYEGANVSIKNAKPGDIVLISGTIG------DHG----------MAVMSARE 165
Query: 262 DVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH 321
+++ D I + D T G+ ++K V I+
Sbjct: 166 ELQFDTPIFSDVAPLNGLIEKLMTLGEAIKVLRDPTRGGVAEVLYEISKMSG--VGIKIY 223
Query: 322 --NLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQE-GYQA 378
LPV +V AC + H A G +++ + R+ A + ++ E G A
Sbjct: 224 EEKLPV---KESVKSAC-EFMGIDFLHLAN-EGKVVVVVERDYAEKALEIMKSHEYGKDA 278
Query: 379 WIIGIVEKGNR--------TARIIDKPRVIEVP 403
IIG V T+RI+D+P +P
Sbjct: 279 EIIGEVNDSKLVTINTIYGTSRIVDRPIGELLP 311
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 80.0 bits (198), Expect = 7e-17
Identities = 64/337 (18%), Positives = 98/337 (29%), Gaps = 58/337 (17%)
Query: 92 PRIGIGMDSAVIP---LRHGGLSLVQTTDFFYPLVDDPYMM-----GKIACSNVLSDLYA 143
P + D A + L G L +TD V DP GK+A +D+
Sbjct: 28 PWLAEQEDQARLDLAQLVAEGDRLAFSTD---SYVIDPLFFPGGNIGKLAICGTANDVAV 84
Query: 144 MGVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIG 203
G L + + + V+ ++A AG A+ G T V
Sbjct: 85 SGA-IPRYLSCGFILEEGLPMETLKAVV----TSMAETARTAGIAIVTGDTKVVQRGAAD 139
Query: 204 GVATTVC-----QPNEYIVPDNAVVGDVLVLTKPLGTQ-VAVNAHQWLDQPERWNRIKLI 257
+ N + GD+L+++ LG + R +L
Sbjct: 140 KLFINTAGMGAIPTNIHWGAQTLTAGDILLVSGTLGDHGATILNL----------REQLG 189
Query: 258 VSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVS 317
+ + V A L + L D T G+ A
Sbjct: 190 LDGELVSDC--------AVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFA--AACGCG 239
Query: 318 FVIH--NLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQE- 374
I LPV AV C + L + A G L+I + R A +
Sbjct: 240 IEISESALPV---KPAVRGVC-ELLGLDALNFAN-EGKLVIAVERNAAEQVLAALHSHPL 294
Query: 375 GYQAWIIGIVEKGNR--------TARIIDKPRVIEVP 403
G A +IG V + R +D P +P
Sbjct: 295 GKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLP 331
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 78.5 bits (194), Expect = 2e-16
Identities = 60/326 (18%), Positives = 103/326 (31%), Gaps = 56/326 (17%)
Query: 92 PRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMM-----GKIACSNVLSDLYAMGV 146
P +G D+A + L L +TD DP G +A ++D+ +G
Sbjct: 34 PILGTLNDAARLDLTGP---LAMSTD---SYTVDPIFFPGGDIGTLAVHGTVNDVSMLGA 87
Query: 147 TECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNP-----WCT 201
L + + + V+ +A EAG + G T V P
Sbjct: 88 RPR-YLSCGFILEEGLDMDILERVV----ASMGKAAREAGVFIVTGDTKVVPRGACDKMF 142
Query: 202 IGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLG---TQVAVNAHQWLDQPERWNRIKLIV 258
I + D A GD ++++ +G + + +
Sbjct: 143 INTTGIGEILVDPAPSGDRARPGDAILISGSMGDHGLTILSQRQGLNFAAD-------VC 195
Query: 259 SEDDVRKAYQRSMDSMARLNR-IAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVS 317
S+ A LNR + ++ + H D T GL +A +
Sbjct: 196 SD-------------SASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQ--AV 240
Query: 318 FVIH--NLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEK-QE 374
+ +PV +V C + L + A G L+ LP E+A A + +
Sbjct: 241 CHVLETAVPV---RESVRNGC-SFLGLDPLYLAN-EGKLICILPEERAEAALAVLREGPH 295
Query: 375 GYQAWIIGIVEKGNRTARIIDKPRVI 400
G A IG V+ +V+
Sbjct: 296 GEHAARIGSVKSVGE-LGAARAGQVV 320
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus
flagellatus}
Length = 319
Score = 62.6 bits (153), Expect = 4e-11
Identities = 61/308 (19%), Positives = 114/308 (37%), Gaps = 44/308 (14%)
Query: 93 RIGIGMDSAVIPLRHGGLSLVQTTDFF-----YPLVDDPYMMG-KIACSNVLSDLYAMGV 146
+G+G D+A+I G+ L + D + DP+++G K N +SD+ AMG
Sbjct: 21 VLGVGDDAALIQPS-PGMELAVSADMLVANTHFYPNIDPWLIGWKSLAVN-ISDMAAMG- 77
Query: 147 TECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVA 206
+ ++ + E + D + GF A + A+ GG T P TI
Sbjct: 78 --AQPRWATLTIA--LPEADEDWISKFA-AGFFACAAQFDIALIGGDTTRGP-LTISVQI 131
Query: 207 TTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKA 266
P ++ A D + ++ PLG +A L + + +S+ ++
Sbjct: 132 MGETPPGASLLRSTARADDDIWVSGPLG-----DAALALAAIQG----RYPLSDTELAAC 182
Query: 267 YQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH--NLP 324
+ R+ + + AH A D++ GLL + +H ++V + +P
Sbjct: 183 GKALHQPQPRVV--LGQALRGL-AHSALDISD-GLLADLGHILEH--SQVGAEVWLKAIP 236
Query: 325 VIAKMAAVAKACGNMFQLLQGHSAETSGG----LLICLPREQAAAYCKDIEKQEGYQAWI 380
++A ++ +L SGG L + DI +Q +
Sbjct: 237 KSEVVSAHSQEVAIQKMIL-------SGGDDYELCFTASTQHRQQ-IADIGRQLSLDMAV 288
Query: 381 IGIVEKGN 388
IG +
Sbjct: 289 IGRITDTQ 296
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
1.90A {Thermus thermophilus}
Length = 311
Score = 55.6 bits (135), Expect = 7e-09
Identities = 56/307 (18%), Positives = 106/307 (34%), Gaps = 50/307 (16%)
Query: 93 RIGIGMDSAVIPLRHGGLSLVQTTDFF-----YPLVDDPYMMG-KIACSNVLSDLYAMGV 146
+ G D+ + G + + TD F P+ +G + + SDL A
Sbjct: 25 PLPPGDDAGG--VWAEGRAWLLKTDGFLYREVALKGMGPFEVGFRGVAAT-ASDLLAKMG 81
Query: 147 TECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVA 206
L + + + E + + ++RG ++A G + GG T +
Sbjct: 82 RP---LGFTLGLF--LPEDLEEGFVLELVRGAAEAAKRLGAFLLGGDTNRGVEVAL---T 133
Query: 207 TTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKA 266
+ E +P A+ GD+L L + + + + +R+A
Sbjct: 134 VSGYALAEAPLPRKALPGDLLYLAGDRWGRTGAAIRAHYEG-------RSLEGFPKIREA 186
Query: 267 YQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH--NLP 324
+ RL +A + G+ D + GL LA ++ + LP
Sbjct: 187 AFY---PLPRLELLALSGL----LRGSLDSSD-GLAETLWQLA-----DLGVGVEVEALP 233
Query: 325 VIAKMAAVAKACGNMFQLLQGHSAETSGG----LLICLPREQAAAYCKDIEKQEGYQAWI 380
+ + A A + +L+ GG ++ +P+E AAA + K +G +
Sbjct: 234 LYPDVLAFAGSEEAALELV------LYGGEEFEAVLVVPQEGAAA-VEARAKAKGLPLFR 286
Query: 381 IGIVEKG 387
G V G
Sbjct: 287 AGRVVAG 293
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus}
SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A*
1vqv_A
Length = 342
Score = 53.4 bits (129), Expect = 4e-08
Identities = 62/309 (20%), Positives = 108/309 (34%), Gaps = 51/309 (16%)
Query: 91 IPRIGIGMDSAVIPLRHGGLSLVQTTDFF-----YPLVDDPYMMG-KIACSNVLSDLYAM 144
+ IG D+A + + L+ TTD + P +G K N +SD+ A
Sbjct: 55 LESKVIGDDTAP--VEYCSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVN-VSDVIAN 111
Query: 145 GVTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGG 204
G L+ + + + V G K + V GG + I
Sbjct: 112 GGL-PKWALISLNLPEDLEV---SYVERFY-IGVKRACEFYKCEVVGGNISKSEKIGISV 166
Query: 205 VATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVR 264
V + ++ D A +GD + ++ LG ++ L+ E
Sbjct: 167 --FLVGETERFVGRDGARLGDSVFVSGTLG-----DSRAGLELLLMEKE----EYEPFEL 215
Query: 265 KAYQRSMDSMARLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIH--N 322
QR + AR++ + + KY A+ + D++ GL+ A LA+ ++ V I
Sbjct: 216 ALIQRHLRPTARID--YVKHIQKY-ANASMDISD-GLVADANHLAQ--RSGVKIEILSEK 269
Query: 323 LPVIAKMAAVAKACGNMFQLLQGHSAETSGG----LLICLPREQAAAYCKDIEKQEGYQA 378
LP+ ++ + G GG LL P+E+ +
Sbjct: 270 LPLSNELKMYCEKYG-----KNPIEYALFGGEDYQLLFTHPKERWNPFLD---------M 315
Query: 379 WIIGIVEKG 387
IG VE+G
Sbjct: 316 TEIGRVEEG 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 0.001
Identities = 56/376 (14%), Positives = 106/376 (28%), Gaps = 142/376 (37%)
Query: 32 RPFDPVVH-DLDATFRLCRFADLKGRGCKVPQ------EVL-AKLLECLQQ--DETAQDH 81
RP + H L+ VP L + + L + + A D
Sbjct: 7 RPLT-LSHGSLEHVL-------------LVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 82 E-------HAHFMHMAIPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVDDPYMMGKIAC 134
E F+ + + + + L+L T+F ++ Y+ G
Sbjct: 53 EPTTPAELVGKFLGYVSSLV----EPSKVGQFDQVLNLC-LTEF-----ENCYLEGN--- 99
Query: 135 SNVLSDLYAMGVTECDNLLMLVAVSTKMTEKERDVV------IPLMLRGFK---DSAL-- 183
D++A+ L+ + K ++++ + R F +SAL
Sbjct: 100 -----DIHALAAK-------LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 184 --EAGT----AVTGGQTVVNPWCTIGGVATTVCQPNEYIVPDNAVVGDVLVLT----KPL 233
G A+ GGQ G ++Y + L L
Sbjct: 148 AVGEGNAQLVAIFGGQ----------GN------TDDYF--------EELRDLYQTYHVL 183
Query: 234 GTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGA 293
+ + + L + LI + D K + + ++ + L + Y
Sbjct: 184 VGDLIKFSAETLSE--------LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----- 230
Query: 294 TDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACG----NMFQLLQGHSAE 349
L +S + + +A AK G + L+G +
Sbjct: 231 --------LLSI---------PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG- 272
Query: 350 TSGGLLICLPREQAAA 365
S GL+ A A
Sbjct: 273 HSQGLVT------AVA 282
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.011
Identities = 53/386 (13%), Positives = 104/386 (26%), Gaps = 117/386 (30%)
Query: 37 VVHDLDATFRLCRFAD----LKGRGCKVPQEVLAKLLE-CLQQDETAQDHEHAHFMHMAI 91
V C+ L + C P+ VL L + Q D H +
Sbjct: 170 VCLSYK---VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD----HSSN 222
Query: 92 PRIGIGMDSAVIPLRHGGLSLVQTTDFFYP---LV-DDPYMMGKIACSNVLSDLYAMGVT 147
++ I S LR L+++ Y LV + + + + A +
Sbjct: 223 IKLRI--HSIQAELRR----LLKSKP--YENCLLVLLN------VQNAKAWN---AFNL- 264
Query: 148 ECDNLLMLVAVSTK--------MTEKERDVVIPLMLRGF-KDSALEAGTAVTGGQTVVNP 198
C L ++T+ + + D
Sbjct: 265 SCKIL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD------- 312
Query: 199 WCTIGGVATTVCQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNR----- 253
C+P + +P + + L+ +A + L + W
Sbjct: 313 -----------CRPQD--LPREVLTTNPRRLS-----IIAESIRDGLATWDNWKHVNCDK 354
Query: 254 ----IKLIV---SEDDVRKAYQRSMDSMARLN---RIAARLMHKY-NAHGATDVTGFGLL 302
I+ + + RK + D ++ I L+ +DV
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 303 GHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLI---CLP 359
H +L + Q E + I ++ + K N + L H + ++ +P
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELK-----VKLENEYAL---HRS------IVDHYNIP 456
Query: 360 REQAAAYCKD---IEKQEGYQAWIIG 382
+ + D + Y IG
Sbjct: 457 K----TFDSDDLIPPYLDQYFYSHIG 478
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
PDB: 3qty_A*
Length = 350
Score = 34.4 bits (80), Expect = 0.049
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARI 393
G+ I ++Q + +K + + IG + + I
Sbjct: 310 GMTIIASQDQFDKMQELAKKHTNTKLYQIGKITNSGKVEII 350
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET: MSE
PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 33.9 bits (78), Expect = 0.089
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKP 397
+ I + E A I K G A I+G VE+ ++ II+
Sbjct: 340 RMEIYIAPEHAEE-VIGISKSFGIDAQIVGFVEEADKNELIIESE 383
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint
center for structural genomics, JCSG; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 394
Score = 33.1 bits (76), Expect = 0.17
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARII 394
L I A I K+ +A IIG VE R+
Sbjct: 342 RLEIYTDAAHAEG-MIAIAKKFNIEAKIIGRVEAPVAGKRLT 382
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
purine biosynthesis, AIR synthase family, spine, FGAR
amidotransferase; 2.31A {Bacillus anthracis}
Length = 346
Score = 29.8 bits (68), Expect = 1.4
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN 388
G+++ + E A + + +++G A IIG +G
Sbjct: 302 GMVVAVKEEDAKDIVRLL-EEQGETARIIGRTVQGA 336
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae}
PDB: 1cli_A
Length = 349
Score = 29.4 bits (67), Expect = 2.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPRVI 400
GL+I LP++QA A + + EG AW+IG + N ++ +V
Sbjct: 306 GLIIALPKDQANAAVALL-QAEGETAWVIGEIAAANS-----NEAQVE 347
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
proteins, cytoplasm, purine biosynthesis, structural
genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Length = 348
Score = 29.4 bits (67), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN 388
GL++ + E AA + + + G A+IIG V KG
Sbjct: 304 GLVLAVSPETAAPLVEWL-SERGEPAYIIGEVAKGA 338
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR
methyltransferase; carbon dioxide fixation, cobalamin,
methyltatrahydrofolate; 2.20A {Moorella thermoacetica}
SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A*
2ogy_A*
Length = 262
Score = 29.1 bits (66), Expect = 2.6
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 25/65 (38%)
Query: 83 HAHFMHMAIPRIGIGMDSAVI-PLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLS-- 139
+ F+ MA + G+ SA+ D ++ A + +L
Sbjct: 211 NRTFLAMA---MACGLMSAIADAC-------------------DEALIETAATAEILLNQ 248
Query: 140 DLYAM 144
+Y
Sbjct: 249 TVYCD 253
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR
methyltransferase; 1.78A {Carboxydothermus
hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Length = 271
Score = 29.1 bits (66), Expect = 2.6
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 25/65 (38%)
Query: 83 HAHFMHMAIPRIGIGMDSAVI-PLRHGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLS-- 139
+ ++ MA + G+D+A++ D ++ A +++L
Sbjct: 220 NRTYLVMA---MTAGLDAAIMDVD-------------------DDALVDAAATAHILLNK 257
Query: 140 DLYAM 144
++Y
Sbjct: 258 EIYCD 262
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 29.0 bits (66), Expect = 2.8
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 353 GLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN 388
G ++ + +EQ + I++ +AW+IG V
Sbjct: 276 GAVLVVSKEQTEQILRGIQQH-KEEAWVIGSVVARA 310
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 28.9 bits (65), Expect = 3.6
Identities = 16/129 (12%), Positives = 47/129 (36%), Gaps = 11/129 (8%)
Query: 242 HQWLDQP--------ERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLMHKYNAHGA 293
QWL P +R + I+ ++ D + + L R+ +++ + + +
Sbjct: 437 KQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKS 496
Query: 294 TD-VTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQ--LLQGHSAET 350
+ ++ T +K + + + V+ K+ + + + F+ +L+ +
Sbjct: 497 QNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQ 556
Query: 351 SGGLLICLP 359
+ P
Sbjct: 557 TKNPEGRFP 565
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 28.8 bits (65), Expect = 4.2
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 94 IGIGMDSAVIPLRHGGLSLVQTTDFFYPLVD-DPYMMGKIACSNVLSDLYAMG-----VT 147
+ G +AV+ + T L D Y IA + ++G +T
Sbjct: 395 VPPGFGAAVMRI-KRDGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAIT 453
Query: 148 ECDN 151
C N
Sbjct: 454 NCVN 457
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 28.4 bits (62), Expect = 5.5
Identities = 12/72 (16%), Positives = 25/72 (34%)
Query: 18 QLELGSNPNELALRRPFDPVVHDLDATFRLCRFADLKGRGCKVPQEVLAKLLECLQQDET 77
L+ +P VV ++ + K R + EV+ ECL++ E
Sbjct: 282 GLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEP 341
Query: 78 AQDHEHAHFMHM 89
+ + + +
Sbjct: 342 VFADTNLYVLRL 353
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 27.4 bits (60), Expect = 8.5
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 251 WN---RIKLIVSEDDVRKAYQRSMDSMARLNRIAA 282
W +A + + S+A L RI
Sbjct: 192 WKASLSFMTFAPTAIQAQAAENFLQSLAELARIPN 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,382,371
Number of extensions: 393649
Number of successful extensions: 783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 34
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)