RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4307
(412 letters)
>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex
aeolicus [TaxId: 63363]}
Length = 152
Score = 109 bits (273), Expect = 2e-29
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Query: 47 LCRFADLKGRGCKVPQEVLAKLLECLQQDETAQDHEHAHFMHMAIPRIGIGMDSAVIPLR 106
L + G KV L ++L+ + IG D+ V
Sbjct: 2 LLKLVRSSGCAAKVGPGDLQEILKGFNIYTDES------------TLVSIGDDAGVY--E 47
Query: 107 HGGLSLVQTTDFFYPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLVAVSTKMTEKE 166
H G+ V T D P+V+DPY+ G I+ +N LSD+YAMG + L + + ++ +
Sbjct: 48 HNGIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCFNNCELDIE- 106
Query: 167 RDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATTVCQPNEY 215
+ ++RG D EA T + GG T+ + G +C +Y
Sbjct: 107 ---IFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGKY 152
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD
{Aquifex aeolicus [TaxId: 63363]}
Length = 182
Score = 68.5 bits (166), Expect = 3e-14
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 36/193 (18%)
Query: 216 IVPDNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMA 275
I A VG +L+LTKP+GT + + + + I+ E+D+ +A +++M
Sbjct: 1 ITQSGAQVGQLLILTKPIGTGILIKGLK-----------EGILKEEDINEA----IENML 45
Query: 276 RLNRIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKA 335
LN A LM +A TDVTGFGLLGHA + K+ +P + K
Sbjct: 46 ALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKK 105
Query: 336 CG--------------------NMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEG 375
+ ++L+ TSGGLL + +E+ + K+
Sbjct: 106 KIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEK-IDETAKELE 164
Query: 376 YQAWIIGIVEKGN 388
WIIG N
Sbjct: 165 VNYWIIGETIAEN 177
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation
protein HypE {Thermococcus kodakaraensis [TaxId:
311400]}
Length = 113
Score = 64.2 bits (156), Expect = 2e-13
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 99 DSAVIPLRHGGLSLVQTTDFF--YPLVDDPYMMGKIACSNVLSDLYAMGVTECDNLLMLV 156
D A IP G +V T D PL +G++A S ++DL MG ++
Sbjct: 1 DGATIPF--GDKHIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMGAEPIALANSMI 58
Query: 157 AVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGVATT 208
E + V+ + ++A E + G T V V T
Sbjct: 59 IGEGLDMEVLKRVL-----KSMDETAREVPVPIVTGDTKVVEDKIEMFVITA 105
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation
protein HypE {Thermococcus kodakaraensis [TaxId:
311400]}
Length = 179
Score = 63.3 bits (153), Expect = 2e-12
Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 22/191 (11%)
Query: 220 NAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNR 279
A VGD ++++ +G + + + + + +
Sbjct: 5 GAKVGDAVLVSGTIGDHGIA--------------LMSHREGIAFETELKSDVAPIWDVVK 50
Query: 280 IAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNM 339
A + N H D T GL +A+ + ++P+ + +A M
Sbjct: 51 AVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPE----VRAASEM 106
Query: 340 FQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKP-- 397
+ A +++ A + ++G A IIG V R +++
Sbjct: 107 LGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLLETGIG 166
Query: 398 --RVIEVPAKE 406
R +E P +
Sbjct: 167 GKRFMEPPEGD 177
>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL)
N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 137
Score = 50.1 bits (119), Expect = 2e-08
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 12/121 (9%)
Query: 91 IPRIGIGMDSAVIPLRHGGLSLVQTTDFFYPLVD-----DPYMMGKIACSNVLSDLYAMG 145
+ IG D+A + + L+ TTD V P +G A S +SD+ A G
Sbjct: 19 LESKVIGDDTAPV--EYCSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANG 76
Query: 146 VTECDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQTVVNPWCTIGGV 205
L+ L + E + G K + V GG + I
Sbjct: 77 GLPKWALISLN-----LPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSEKIGISVF 131
Query: 206 A 206
Sbjct: 132 L 132
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL)
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 163
Score = 37.6 bits (86), Expect = 0.001
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 23/170 (13%)
Query: 219 DNAVVGDVLVLTKPLGTQVAVNAHQWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLN 278
D A +GD + ++ LG ++ L+ +++ + +
Sbjct: 6 DGARLGDSVFVSGTLG-----DSRAGLELLLMEKEEYEPFELALIQRHLRPTARIDYV-- 58
Query: 279 RIAARLMHKYNAHGATDVTGFGLLGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGN 338
H A+ GL+ A LA+ ++ + LP+ ++ + G
Sbjct: 59 ------KHIQKYANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGK 112
Query: 339 MFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN 388
E LL P+E+ + IG VE+G
Sbjct: 113 NPIEYALFGGE-DYQLLFTHPKERWNPFLD---------MTEIGRVEEGE 152
>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide
synthetase (PurM) C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 37.8 bits (87), Expect = 0.001
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 5/113 (4%)
Query: 283 RLMHKYNAHGATDVTGFGL-LGHAQTLAKHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQ 341
L+ K + H +TG G + L + + + P + A +
Sbjct: 65 ELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEM 124
Query: 342 LLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARII 394
+ G++I LP + + G AW IGI++ + R++
Sbjct: 125 Y---RTFNCGVGMIIALPAPEVDKALALLNAN-GENAWKIGIIKASDSEQRVV 173
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine
polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Length = 285
Score = 27.6 bits (61), Expect = 3.2
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 19/83 (22%)
Query: 92 PRIG--IGMDSAVIPLRHGGLSLVQT-TDFFYPLVDDP-------YMMGKIACSNVLSDL 141
PR+G +S ++ G S D P + M K+ + DL
Sbjct: 24 PRMGQPPTPESLTEGGQYYGWSRGINLATSDTE--DSPGNNTLPTWSMAKLQLPMLNEDL 81
Query: 142 YAMGVTECDNLLMLVAVSTKMTE 164
CD L M AVS K TE
Sbjct: 82 ------TCDTLQMWEAVSVK-TE 97
>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase
(PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 166
Score = 26.8 bits (59), Expect = 3.6
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 140 DLYAMGVTE--CDNLLMLVAVSTKMTEKERDVVIPLMLRGFKDSALEAGTAVTGGQT 194
DL AM V + L + T K ++ G + L++G ++ GG+T
Sbjct: 82 DLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGET 138
>d2evra1 b.34.11.3 (A:13-86) Cell wall-associated hydrolase Spr
N-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Length = 74
Score = 24.8 bits (54), Expect = 5.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 233 LGTQVAVNAHQWLDQPERWNRIKLIVSEDD 262
L TQ A H W+ + +++ + EDD
Sbjct: 22 LATQSASGRHLWVTSNHQNLAVEVYLCEDD 51
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, N-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 290
Score = 26.1 bits (57), Expect = 8.0
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 243 QWLDQPERWNRIKLIVSEDDVRKAYQRSMDSMARLNRIAARLM 285
+D + I + E+D K+ + S+ LNR L+
Sbjct: 104 IEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLI 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,501,433
Number of extensions: 68043
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 14
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)