BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4310
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 311 bits (797), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 311 bits (797), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 311 bits (797), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 311 bits (797), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 311 bits (797), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 311 bits (796), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 311 bits (796), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 290 bits (743), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/187 (73%), Positives = 166/187 (88%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGD+EGL++KV++LKLD+NEEL++K+KHGQFTLRDMYEQFQNIMKMGPF+QI
Sbjct: 288 PFVSKLLGMGDLEGLMEKVSDLKLDENEELMDKLKHGQFTLRDMYEQFQNIMKMGPFNQI 347
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGFS DF+SKG+E+ESMA+LKRLMT+MDSMNDGELD+ +GAKLFSKQ GR RVA+
Sbjct: 348 IGMIPGFSPDFMSKGNERESMAKLKRLMTMMDSMNDGELDHPNGAKLFSKQPGRAARVAR 407
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+G + +EV +L+ QY+ F+A VKKMGGIKGLFKGGD+ KNVN +QM KLNQQMAKMMDP
Sbjct: 408 GSGTSVREVNELLKQYSNFSATVKKMGGIKGLFKGGDLGKNVNPSQMAKLNQQMAKMMDP 467
Query: 196 RVLHQMG 202
RVL QMG
Sbjct: 468 RVLQQMG 474
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 119/190 (62%), Gaps = 13/190 (6%)
Query: 16 PLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + MGD+ GL+DK+ + + D EL+ K+ G FTLR +YEQFQN++KMGP Q
Sbjct: 289 PFVSRLLGMGDLSGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQ 348
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PGFS + + KG E+E A++KR MTIMDSM ELD+ + KL ++ RI R+A
Sbjct: 349 VFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTN-PKLMTE--SRIIRIA 405
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKG--GDITKNVNQTQMMKLNQQMAKM 192
+G+G ++V D++ +Y + A + KM G+K G D+++N+N QQM K
Sbjct: 406 RGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLN-------IQQMTKA 458
Query: 193 MDPRVLHQMG 202
+ P+VL QMG
Sbjct: 459 LPPQVLKQMG 468
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 120/190 (63%), Gaps = 13/190 (6%)
Query: 16 PLYCGICCMGDIEGLIDKVNEL-KLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + MGD G +DK++E+ +D EL++K+ G FTLR MYEQFQNI+KMGP Q
Sbjct: 289 PFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQ 348
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PGFS + + KG E ES A++KR MT+MDSM + ELD+ + KL + RI R+A
Sbjct: 349 VFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSN-PKLMT--DSRIMRIA 405
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKG--GDITKNVNQTQMMKLNQQMAKM 192
+G+G EV D++ +Y + A + KM G+K KG +++N+N Q M+K+
Sbjct: 406 RGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNA-------QHMSKV 458
Query: 193 MDPRVLHQMG 202
+ P++L Q+G
Sbjct: 459 LPPQMLKQIG 468
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 119/190 (62%), Gaps = 13/190 (6%)
Query: 16 PLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + MGD+ GL+DK+ + + D EL+ K+ G FTLR +YEQFQN++KMGP Q
Sbjct: 289 PFVSRLLGMGDLSGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQ 348
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PGFS + + KG E+E A++KR MTIMDSM ELD+ + KL ++ RI R+A
Sbjct: 349 VFSMLPGFSSELMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTN-PKLMTE--SRIIRIA 405
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKG--GDITKNVNQTQMMKLNQQMAKM 192
+G+G ++V D++ +Y + A + KM G+K G D+++N+N QQM K
Sbjct: 406 RGSGRQIRDVTDMLEEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLN-------IQQMTKA 458
Query: 193 MDPRVLHQMG 202
+ P+VL QMG
Sbjct: 459 LPPQVLKQMG 468
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 123/191 (64%), Gaps = 15/191 (7%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNE-ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + MGD G +DK+ E+ D + EL+EK+ G FTLR MY+QFQNI+ MGP +
Sbjct: 289 PFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKE 348
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PG S + + KG E+ES A++KR MT+MDSM + ELD+ + K+F++ R+ R+A
Sbjct: 349 VFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSN-PKVFNE--SRMMRIA 405
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGD---ITKNVNQTQMMKLNQQMAK 191
+G+G +EV +++ +Y + A + KM G+K + K GD +++N+N Q M+K
Sbjct: 406 RGSGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKNGDMSALSRNMNA-------QHMSK 457
Query: 192 MMDPRVLHQMG 202
++ P++L Q+G
Sbjct: 458 VLPPQMLKQIG 468
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 137 bits (344), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 14/190 (7%)
Query: 16 PLYCGICCMGDIEGLIDKVNEL-KLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + MGD+ GL++K+ ++ +D EL++K+ G FTLR MYEQFQ+++KMGP
Sbjct: 290 PFVSRLLGMGDLSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLG- 348
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PGFS + + +G E+ES A+ KR MT+MDSM D ELD+ + K+ ++ RI R+A
Sbjct: 349 VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTN-PKILTE--SRIMRIA 405
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKG--GDITKNVNQTQMMKLNQQMAKM 192
+G+G EV +++ +Y + A + KM G+K KG +++N+N Q M+K+
Sbjct: 406 RGSGRLVHEVMEMLEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNA-------QNMSKV 458
Query: 193 MDPRVLHQMG 202
+ P++L Q+G
Sbjct: 459 LPPQMLKQIG 468
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare
GN=SRP54-3 PE=2 SV=1
Length = 493
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 113/190 (59%), Gaps = 16/190 (8%)
Query: 16 PLYCGICCMGDIEGLIDKVNEL-KLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + GD+ GLIDK+ + D EL+ K+ G FTLR +YEQFQN++KMGP SQ
Sbjct: 288 PFVARLLGRGDLPGLIDKMESIVPADQQSELVAKLSEGAFTLRLLYEQFQNLLKMGPMSQ 347
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
I M+PGFS + + KG E++S + KR MTIMDSM ELD+ + KL ++ RI RVA
Sbjct: 348 IFSMLPGFSSELMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTN-PKLMTES--RIIRVA 404
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLN--QQMAKM 192
+G+G K+V +++ +Y + A + K +++K + Q M Q+M K+
Sbjct: 405 RGSGRKVKDVMEMLEEYKRLAKMWSKR----------NVSKLIPQNGKMSAQAIQKMLKV 454
Query: 193 MDPRVLHQMG 202
M P+V+ QMG
Sbjct: 455 MPPQVVQQMG 464
>sp|P49966|SR542_ARATH Signal recognition particle 54 kDa protein 2 OS=Arabidopsis
thaliana GN=SRP-54B PE=3 SV=2
Length = 497
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 121/190 (63%), Gaps = 13/190 (6%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNE-ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + GD+ G ++K+ E+ D + EL+E + HG+FTLR MY+QFQN++ MGP +
Sbjct: 291 PFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKE 350
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PG + + +G E+ES A++KR MT+MDSM + ELD+ + K+F++ RI R+A
Sbjct: 351 VFSMLPGMRAEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSN-PKVFNE--SRIMRIA 407
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKG--GDITKNVNQTQMMKLNQQMAKM 192
+G+G +EV +++ +Y + + K+ G+K L KG ++KN N +QQ++K+
Sbjct: 408 RGSGRIVREVMEMLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKN-------SQQLSKV 460
Query: 193 MDPRVLHQMG 202
+ ++L Q+G
Sbjct: 461 LPAQMLKQIG 470
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 25/188 (13%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDD-NEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + GD GL+DK+ E+ D EL+E + G FTLR MY+QFQ +++ P +Q
Sbjct: 289 PFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQ 347
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PG S + + KG +ES ++KR MT+MDSM + ELD+ + K+F++ RI R+A
Sbjct: 348 LFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPN-PKIFNE--SRIMRIA 404
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMD 194
+G+G +EV +++ +Y + A K M GIK + K GD M+K++
Sbjct: 405 RGSGRLVREVMEMLEEYKRIA---KTMKGIK-IPKNGD----------------MSKVIP 444
Query: 195 PRVLHQMG 202
P++L QMG
Sbjct: 445 PQMLKQMG 452
>sp|Q99150|SRP54_YARLI Signal recognition particle 54 kDa protein homolog OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SRP54 PE=3 SV=2
Length = 536
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Query: 24 MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
+GD++GL++ + L LD ++ +E I+ G FTL D+ +Q N++KMG S I GMIPG S
Sbjct: 299 IGDLQGLMETMQSLNLD-QKKTMEHIQEGIFTLADLRDQMGNMLKMGSLSSIAGMIPGLS 357
Query: 84 QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
S S++E R+KR++ I+DSMN ELD+ DG+ +F + RITRVA+G+G + +E
Sbjct: 358 -GMASSISDEEGTRRIKRMIYILDSMNQKELDS-DGS-IFKEVPSRITRVARGSGTSIRE 414
Query: 144 VKDLISQYTKFAAVVKKMGGIKGL 167
V++++ Q A++ +MGG G+
Sbjct: 415 VEEVLQQQKMMASMASRMGGKNGM 438
>sp|Q00179|SRP54_ASPNG Signal recognition particle 54 kDa protein homolog OS=Aspergillus
niger GN=srpA PE=3 SV=1
Length = 534
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 12/158 (7%)
Query: 24 MGDIEGLIDKVNELKLDDN--EELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
MGD+ GL++ V + D +E + I G +TLRD E +IMKMGP S++ GMIPG
Sbjct: 298 MGDMAGLVEHVQAVTKDSASAKETYKHISEGIYTLRDFRENITSIMKMGPLSKLSGMIPG 357
Query: 82 FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTE 141
S E SM +L+R++ I DSM ELD DG K+F +Q R+ R+A G+G T
Sbjct: 358 LSNLTAGLDDEDGSM-KLRRMIYIFDSMTAAELDG-DG-KMFVEQPSRMVRIACGSGTTV 414
Query: 142 KEVKDLISQYTKFAAVVKKMGGIK-------GLFKGGD 172
+EV+DL+SQ+ A + K++GG K + KGG+
Sbjct: 415 REVEDLLSQHRMMAGMAKRVGGQKKQMQRAQNMLKGGN 452
>sp|P21565|SRP54_SCHPO Signal recognition particle 54 kDa protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp54 PE=1 SV=1
Length = 522
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 87/128 (67%), Gaps = 3/128 (2%)
Query: 41 DNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLK 100
D + +++ ++ G+FT+RD +Q NIMK+GP S++ MIPG S + ++ +++E R+K
Sbjct: 313 DKKNMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMS-NMMNGMNDEEGSLRMK 371
Query: 101 RLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKK 160
R++ I+DSM + ELD+ DG LF +Q R+ RVA+G+G + EV++ ISQ FA + KK
Sbjct: 372 RMLYIVDSMTEQELDS-DGL-LFVEQPSRVLRVARGSGTSVLEVEETISQVRVFAQMAKK 429
Query: 161 MGGIKGLF 168
+GG G+
Sbjct: 430 IGGKDGIL 437
>sp|O42816|SRP54_CANAX Signal recognition particle 54 kDa protein homolog OS=Candida
albicans GN=SRP54 PE=2 SV=1
Length = 556
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 89/146 (60%), Gaps = 6/146 (4%)
Query: 24 MGDIEGLIDKVNELKLDDNE---ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+GDI+GLI+ V L L +E + IE IK G+FTLRD Q N +KMGP + I MIP
Sbjct: 314 IGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQNQMNNFLKMGPLTNIASMIP 373
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G S + +S+ ++E+ ++K ++ IMDSM EL+ DG ++F K+ RI RVA+G+G
Sbjct: 374 GLS-NIMSQVGDEETSKKIKNMIYIMDSMTTKELEC-DG-RIFIKEPSRIVRVARGSGCA 430
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKG 166
EV+ ++ Q+ + + K +G
Sbjct: 431 VVEVEMILQQHRMMSTMAKSAMAAQG 456
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 21 ICCMGDIEGLIDKVNELK--LDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGM 78
+ +GDI+GL++K EL+ ++ EE IE+ G+FTL+DMY Q + + KMGP QI+ M
Sbjct: 293 LLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRM 352
Query: 79 IPG----FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
IPG D +S G E RLK+ IMDSM + EL N + RI R+A
Sbjct: 353 IPGLGYSLPDDVISIGEE-----RLKKFKVIMDSMTEEELLNPEII-----NYSRIKRIA 402
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKM 161
+G+G + K+VK+L+ QY + + K M
Sbjct: 403 RGSGTSTKDVKELLDQYRQMKKLFKSM 429
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+ MGD++ L++K ++ + EE I+ I G+FTL ++Y Q + I KMGP QIMGMIP
Sbjct: 293 LLGMGDLDSLLEKTEDVMDESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIP 352
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
GF + + K + Q + +LKR +MDSM E +N + K T R+ R+A+GAGV
Sbjct: 353 GFGGN-MPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIK-----TSRLQRIAKGAGVK 406
Query: 141 EKEVKDLISQYT 152
+ E+KDL+ Y
Sbjct: 407 QDEIKDLLKYYA 418
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 6/159 (3%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+ MGD++ L++K ++ DD EE ++ + G+FTL ++Y Q + I KMG Q+M MIP
Sbjct: 293 LLGMGDLDSLLEKTEDIIDDDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIP 352
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G + L KG+ + +LK+ IMDSM E +N D K T R+ R+A+GAGV
Sbjct: 353 GMGTN-LPKGAADITEHKLKKYKIIMDSMTSTEKENPDIIK-----TSRMKRIAKGAGVK 406
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQ 179
++E+K+L+ Y+ + M K L GG + K + Q
Sbjct: 407 QEEIKELLKYYSTTKNAFQNMKSGKMLKMGGPMGKIMRQ 445
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 21 ICCMGDIEGLIDKVNELKLDD--NEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGM 78
+ +GDI+GL++K+ EL+ + EE +EK G+F L+DMY Q + + KMGP QI+ M
Sbjct: 293 LLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQM 352
Query: 79 IPG----FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
IPG +D + G E +LKR IMDSM + EL+N + RI R+A
Sbjct: 353 IPGLGYSLPEDAVRVGEE-----KLKRYKVIMDSMTEEELENPEIINY-----SRIKRIA 402
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKM 161
+G+G T EV++L++QY + + K +
Sbjct: 403 RGSGATTAEVRELLNQYNQMKKMFKSL 429
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 8/143 (5%)
Query: 21 ICCMGDIEGLIDKVNELKLDDN--EELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGM 78
+ +GDI+GL++K+ EL+ + EE +EK G+F L+DMY Q + + KMGP QI+ M
Sbjct: 293 LLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQM 352
Query: 79 IPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAG 138
IPG L + + +L+R IMDSM + EL+N D RI R+A+G+G
Sbjct: 353 IPGLGYS-LPDEAVRVGEEKLRRYRIIMDSMTEEELENPDIINY-----SRIKRIARGSG 406
Query: 139 VTEKEVKDLISQYTKFAAVVKKM 161
+ +EV++L++QY + + K +
Sbjct: 407 TSTREVRELLAQYNQMRKMFKNL 429
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 21 ICCMGDIEGLIDKVNELK--LDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGM 78
+ +GDI+GL++K EL+ ++ EE +E+ G+FTL+DMY Q + + KMGP QI+ M
Sbjct: 293 LLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRM 352
Query: 79 IPG----FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
IPG + +S G E RL++ IMDSM + EL N D RI R+A
Sbjct: 353 IPGLGYSLPDEVISVGEE-----RLRKFKVIMDSMTEEELMNPDII-----NYSRIKRIA 402
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKM 161
+G+G + K+VK+L++QY + K M
Sbjct: 403 RGSGTSVKDVKELLNQYNQMKKFFKSM 429
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 21 ICCMGDIEGLIDKVNELK--LDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGM 78
+ +GDI+GL++K EL+ ++ EE I++ G+FTL+DMY Q + + KMGP QI+ M
Sbjct: 293 LLGLGDIQGLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRM 352
Query: 79 IPG----FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
IPG + +S G E RL++ IMDSM + EL N + RI R+A
Sbjct: 353 IPGLGYSLPDELISVGEE-----RLRKFKVIMDSMTEEELMNPEII-----NYSRIKRIA 402
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKM 161
+G+G + K+VK+L++QY + K M
Sbjct: 403 RGSGTSIKDVKELLTQYNQMKKFFKSM 429
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
I MGD++ L++K ++ + EE I+ I G+FTL ++Y Q + I KMGP QI+ MIP
Sbjct: 293 ILGMGDLDSLLEKTEDIMDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIP 352
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G + L K + Q + +LKR +MDSM E +N + K R+ R+A+GAGV
Sbjct: 353 GMGGN-LPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIK-----ASRLQRIAKGAGVK 406
Query: 141 EKEVKDLISQYT 152
++E+KDL+ Y+
Sbjct: 407 QEEIKDLLKYYS 418
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 16/147 (10%)
Query: 21 ICCMGDIEGLIDKVNELKLDD--NEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGM 78
+ +GDI+GL++K EL+ EE +EK G+F L+DMY Q + + KMGP QI+ M
Sbjct: 293 LLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQM 352
Query: 79 IPG----FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
IPG D + G E RLK+ IMDSM + EL++ + RI R+A
Sbjct: 353 IPGMGYSLPDDAVRVGEE-----RLKKFKVIMDSMTEEELEHPEIINY-----SRIKRIA 402
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKM 161
+G+G + +EV++L+ QY + + K M
Sbjct: 403 RGSGTSIQEVRELLHQYNQMKKMFKSM 429
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 6/132 (4%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
I GD++ L++K ++ + EE I+ I G+FTL ++Y Q + I KMGP QI+ MIP
Sbjct: 293 ILGFGDLDSLLEKTEDIMDESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIP 352
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G + + K + Q + +LKR +MDSM E +N + K T R+ R+A+GAGV
Sbjct: 353 GMGGN-MPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIK-----TSRLQRIARGAGVK 406
Query: 141 EKEVKDLISQYT 152
+E+KDL+ Y+
Sbjct: 407 PEEIKDLLKYYS 418
>sp|A2BNB5|SRP54_HYPBU Signal recognition particle 54 kDa protein OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3
SV=1
Length = 447
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 18/147 (12%)
Query: 21 ICCMGDIEGLIDKVNELK-LDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMI 79
+ MGD+E L++K+ L+ +++ E+ + ++ G+ T R +Y+Q Q + K+GPF +I+ MI
Sbjct: 293 LLGMGDLESLLEKIERLRGVEEFEKTVAEMMSGKITFRTIYKQLQQVTKLGPFRKILQMI 352
Query: 80 PGFSQ-----DFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
PG S D ++ SE+ ++K+ +TIM+SM ELDN + ++ R+ R+A
Sbjct: 353 PGISTMLESLDEAARLSEE----KVKKWLTIMNSMTYEELDNPN----LLEERSRVKRIA 404
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKM 161
GAGV EV++L + Y VKKM
Sbjct: 405 VGAGVEPSEVRELYNYYKS----VKKM 427
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 32 DKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGS 91
+K ++ + EE I+ I G+FTL ++Y Q + I KMGP QI+ MIPG + + K +
Sbjct: 304 EKTEDIMDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGN-MPKEA 362
Query: 92 EQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQY 151
Q + A+LKR +MDSM E +N + K T R+ R+A+GAGV ++E+KDL+ Y
Sbjct: 363 AQLTEAKLKRYKIMMDSMTMEEKENPELIK-----TSRLQRIAKGAGVKQEEIKDLLKYY 417
Query: 152 T 152
+
Sbjct: 418 S 418
>sp|A0B638|SRP54_METTP Signal recognition particle 54 kDa protein OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1
Length = 444
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 24 MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP-GF 82
MGDI+GLI+K E++++ + + ++ + G+FTL+DMY+Q + + KMGP QIM M+P G
Sbjct: 291 MGDIKGLIEKAQEVQIESDVD-VDAMMKGKFTLKDMYKQLEAMNKMGPLKQIMQMLPFGG 349
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
LS Q + RL+ IMDSM D EL++ K+ + RI R+A+G+G +
Sbjct: 350 IGIELSDKEYQVTKERLEAYRFIMDSMTDEELED---PKIIN--ASRIKRIARGSGTRPE 404
Query: 143 EVKDLISQYTKFAAVVKKMGG 163
VK+L+ + +K M G
Sbjct: 405 LVKELLKSHAAMQKAIKGMRG 425
>sp|P20424|SRP54_YEAST Signal recognition particle subunit SRP54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP54 PE=1
SV=2
Length = 541
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 24 MGDIEGLIDKVNELK-LDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
+GDIE L +++ + +D + +E I+ G+FTL D +Q Q IMKMGP S I MIPG
Sbjct: 305 IGDIESLFEQLQTVSNKEDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIAQMIPGM 364
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
S + +++ E+E+ ++K+++ ++DSM EL++ DG ++F ++ R+ RVA+G+G +
Sbjct: 365 S-NMMNQVGEEETSQKMKKMVYVLDSMTKEELES-DG-RMFIEEPTRMVRVAKGSGTSVF 421
Query: 143 EVKDLISQ 150
EV+ ++ Q
Sbjct: 422 EVEMILMQ 429
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 32 DKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGS 91
+K ++ + EE I+ I G+FTL ++Y Q + I KMGP QI+ MIPG + L K +
Sbjct: 304 EKTEDIMDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGN-LPKEA 362
Query: 92 EQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQY 151
Q + +LKR +MDSM L+ ++ +L +T R+ R+A+GAGV + E+KDL+ Y
Sbjct: 363 AQLTEDKLKRYKIMMDSMT---LEEKENPELI--KTSRLQRIAKGAGVKQDEIKDLLKYY 417
Query: 152 T 152
+
Sbjct: 418 S 418
>sp|Q2NE47|SRP54_METST Signal recognition particle 54 kDa protein OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1
Length = 444
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 7/140 (5%)
Query: 24 MGDIEGLIDKVNELKLD-DNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGD++ LI+K E+ + ++E+I+ I G+FTL+DM Q + + KMGP QIM +IPG
Sbjct: 294 MGDLDTLIEKAAEVTSEKSDKEMIDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGL 353
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
+ S + + +L +M+SM EL+N + K RI R+++GAG+T
Sbjct: 354 GNQLPANAS-KVTEEKLGMYKILMNSMTTYELENPEVIK-----KSRINRISRGAGLTND 407
Query: 143 EVKDLISQYTKFAAVVKKMG 162
+VKDL+ Y +K MG
Sbjct: 408 DVKDLLKYYNVTKKALKGMG 427
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 18/159 (11%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKH-----GQFTLRDMYEQFQNIMKMGPFSQI 75
I MGDIE +I+K+ +++ E++ +K++ + TLRD+Y+Q + KMGP ++I
Sbjct: 290 ILGMGDIESIIEKIK--GMEEYEQIQKKMEEVMSGKAKLTLRDIYKQLTALRKMGPLNKI 347
Query: 76 MGMIPGFSQDFLSKGSEQESMA--RLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRV 133
+ M+PGF F EQ + ++K+ + IM+SM ELDN + K RI R+
Sbjct: 348 LQMLPGFGV-FSQIPEEQLKLGEEKIKKFLVIMNSMTYKELDN---PSIIDKS--RIRRI 401
Query: 134 AQGAGVTEKEVKDLISQY---TKFAAVVKKMGGIKGLFK 169
A+G+G + +EVK+L+ QY +VK+ G+ LF+
Sbjct: 402 AKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKGLAKLFE 440
>sp|Q0W2G1|SRP54_UNCMA Signal recognition particle 54 kDa protein OS=Uncultured
methanogenic archaeon RC-I GN=srp54 PE=3 SV=1
Length = 444
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 15/133 (11%)
Query: 24 MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP--- 80
MGD+ L+++ NE+ L ++ +EK+ G+FTL DMY+Q + I KMGP QIM M+P
Sbjct: 291 MGDLRALVERANEV-LQKDDVNVEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGG 349
Query: 81 --GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAG 138
G D + K ++ +LK IMDSM E RD KL + RI RVA G+G
Sbjct: 350 LGGNITDDMYKMTQD----KLKGYKVIMDSMTAAE---RDDPKLIG--SSRIARVAHGSG 400
Query: 139 VTEKEVKDLISQY 151
+ +EV++L+ +
Sbjct: 401 KSPEEVRELLKYH 413
>sp|O07853|SRP54_SULAC Signal recognition particle 54 kDa protein OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=srp54 PE=3 SV=2
Length = 444
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 16/161 (9%)
Query: 21 ICCMGDIEGLIDKVNELKLDDN-EELIEKIKHGQ--FTLRDMYEQFQNIMKMGPFSQIMG 77
+ +GDIE +I+K+ ++ +N E+ +E + G+ TLRD+Y+Q + KMGP +I
Sbjct: 290 LLGLGDIESIIEKIKSVEDYENLEKRMEDVISGKTKLTLRDIYKQLIALRKMGPLGKIFQ 349
Query: 78 MIPGFSQDFLSKGSEQE---SMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
M+PG LS+ E++ +++ M IM+SM ELDN + K R+ R+A
Sbjct: 350 MLPGAG--ILSQVPEEQLKLGEEKIRTFMAIMNSMTYKELDN---PSIIDK--ARMRRIA 402
Query: 135 QGAGVTEKEVKDLISQY---TKFAAVVKKMGGIKGLFKGGD 172
+GAGVT +EVK+L+ QY +VK+ G+ LF G +
Sbjct: 403 KGAGVTVEEVKELLKQYQMTNNLLKMVKRRKGLAKLFGGSN 443
>sp|A2STI3|SRP54_METLZ Signal recognition particle 54 kDa protein OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54
PE=3 SV=1
Length = 446
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+ MGD++ L++K E ++ + + + G+FTL DMY+Q + + KMGP Q++ M+P
Sbjct: 288 LLGMGDLKALVEKAEE-SMNAEDVDVNAMLRGKFTLNDMYKQLEAVQKMGPLKQVLSMLP 346
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
+ + S E + ++K+ IMDSM ELD L + T R+ RVA+G+G +
Sbjct: 347 MGNMNVPSDALEG-TADKMKKFRIIMDSMTPQELDE---PALIN--TSRMIRVAKGSGSS 400
Query: 141 EKEVKDLISQY 151
+EV+DLI Y
Sbjct: 401 VEEVRDLIKYY 411
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 21 ICCMGDIEGLIDKV-NELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMI 79
+ MGDI+ LI+K + + D E+ ++ + G+FTL DM QF+ + MGP Q++ MI
Sbjct: 290 LLGMGDIQTLIEKAEDSIDEDMAEKTMKNMMSGKFTLVDMKNQFEMMNSMGPMQQVLSMI 349
Query: 80 PGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGV 139
PG +SK + + + ++ IM SM E++N KL KQ+ RI R+A GAGV
Sbjct: 350 PGLGNK-VSKEASKMTEDKIDGYKVIMSSMTKKEMEN---PKLI-KQS-RIRRIAMGAGV 403
Query: 140 TEKEVKDLISQYTKFAAVVKKMG 162
E EV+DL+ Y +K +G
Sbjct: 404 EESEVRDLLKYYNNTKKTMKGIG 426
>sp|A3DML3|SRP54_STAMF Signal recognition particle 54 kDa protein OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54
PE=3 SV=1
Length = 441
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
I +GD+EGLI+KV +K++ E+ +E+ G+ +R +Y+Q ++ KMGP +I+ MIP
Sbjct: 290 ILGIGDLEGLIEKVRRIKVEFTEKDVEEFLSGRLNMRLVYKQLVSLRKMGPLRKILQMIP 349
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G S + ++ ++K+ + I++SM ELD + + +A GAGV
Sbjct: 350 GLSLKIPLEIEAGKAEEKIKKWLAIINSMTYEELDKPEIIDRRRIRR-----IAYGAGVK 404
Query: 141 EKEVKDLISQY 151
++V++L+ QY
Sbjct: 405 PEDVRELLKQY 415
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+ MGD+E L++K ++ + EE I+ I G+FTL ++ Q + I MG +I+ MIP
Sbjct: 293 LLGMGDLESLLEKAEDMVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIP 352
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
GF + K + A++K+ I+ SM E R+ K+ + RI R+A+G+G T
Sbjct: 353 GFG-GAMPKELSHLTEAKIKKYKVIISSMTKEE---RENPKII--KASRIRRIARGSGTT 406
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDI 173
E +V++++ Y + K+ K L GG +
Sbjct: 407 ENDVREVLRYYETTKNAIDKLRKGKMLRIGGPL 439
>sp|Q977V2|SRP54_HALVD Signal recognition particle 54 kDa protein OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=srp54 PE=1 SV=1
Length = 465
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 21 ICCMGDIEGLIDKV----NELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIM 76
+ MGD++ L ++V +E + +D + E++ G FTL+DM +Q + + KMGP Q++
Sbjct: 288 LLGMGDLKQLSERVERAMSETQAEDEDWDPEEMMKGNFTLKDMQKQMEAMDKMGPLDQVL 347
Query: 77 GMIPGFS---QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTG--RIT 131
MIPGF +D L + + R++ IMDSM + EL+N ++ G R+
Sbjct: 348 DMIPGFGGGIKDQLPDDAMDVTKDRMRSFEVIMDSMTEEELEN-------PRKVGASRVR 400
Query: 132 RVAQGAGVTEKEVKDLISQYTKFAAVVKK 160
R+AQG+G E+ +++L+ Q+ +K+
Sbjct: 401 RIAQGSGQDEETIQELLEQHRMMEQTIKQ 429
>sp|Q18EV2|SRP54_HALWD Signal recognition particle 54 kDa protein OS=Haloquadratum walsbyi
(strain DSM 16790) GN=srp54 PE=3 SV=1
Length = 466
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 24 MGDIEGLIDKVN----ELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMI 79
MGD++ L ++V E + D++ E I G FTL+DM +Q + + +MGP Q+M MI
Sbjct: 291 MGDLKQLSERVERAMAETQEADDDWDPEDIMEGSFTLKDMRKQMEAMDRMGPLDQVMDMI 350
Query: 80 PGFS---QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQG 136
PG +D L + + R++ IMDSM + EL++ S R+ R+A+G
Sbjct: 351 PGLGGGLKDQLPDDAMDVTQNRMRDFDVIMDSMTEAELEDP-----RSVGASRVRRIARG 405
Query: 137 AGVTEKEVKDLISQYTKFAAVVKKMGGI 164
+G E+ V++L+ Q+ +K+ G+
Sbjct: 406 SGTDEETVRELLQQHKMMERTIKQFQGM 433
>sp|A1RS43|SRP54_PYRIL Signal recognition particle 54 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3
SV=1
Length = 433
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 79/134 (58%), Gaps = 13/134 (9%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+ MGD++ L++K+ + + E+++++I+ G+ L +Q + ++K+GP S+++ ++P
Sbjct: 290 VLGMGDLDALVEKIK--AVFEEEKVLQEIESGRLDLLTFKKQIEGLLKLGPLSKVLQLLP 347
Query: 81 GFSQDFLSKGSEQE---SMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGA 137
G F +K SE++ S LK+ I+ SM EL N D RI R+A GA
Sbjct: 348 G---GFAAKISEEQVELSQKNLKKWYAILSSMTIEELKNPDIL-----NASRIRRIALGA 399
Query: 138 GVTEKEVKDLISQY 151
GVT K+VK++++ Y
Sbjct: 400 GVTPKDVKEMLTVY 413
>sp|O27376|SRP54_METTH Signal recognition particle 54 kDa protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=srp54 PE=3 SV=1
Length = 442
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 46 IEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTI 105
++ I G+FTLRDM QF+ + KMGP Q+M M+PG + L K + + + +++ + I
Sbjct: 316 LDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGK--LPKDASRMTEETIRKYLII 373
Query: 106 MDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG 162
MDSM + EL+ D K RI R+A+G+G ++VK+L+ Y +K +G
Sbjct: 374 MDSMTEEELEKPDIIK-----HSRIRRIARGSGTRNEDVKELLKYYRVTKKAMKGLG 425
>sp|Q46E01|SRP54_METBF Signal recognition particle 54 kDa protein OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1
Length = 443
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 21/168 (12%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+ MGD++ L++K E L + + +E + G+FTL+DMY+Q + + KMGP QIM M+P
Sbjct: 288 LLGMGDLKSLMEKAEET-LSEEDVNVEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLP 346
Query: 81 GFSQDF----LSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQG 136
LS Q + ++K TIMDSM + E+ + KL RI R+++G
Sbjct: 347 LGMGGMGGVKLSDEMFQATSDKMKNYKTIMDSMTEEEMTD---PKLIG--GSRIKRISRG 401
Query: 137 AGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMK 184
+G + +EV++L+ + +K F+GG N +MMK
Sbjct: 402 SGCSPEEVRELLKYHKTMQTALKG-------FRGG----KFNIQKMMK 438
>sp|Q8TUY9|SRP54_METKA Signal recognition particle 54 kDa protein OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=srp54 PE=3 SV=1
Length = 447
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 51 HGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMN 110
G+FTL+D+YEQ + + KMGP +++ +PG + Q + RLK+ IMDSM
Sbjct: 320 EGEFTLKDLYEQLEALSKMGPVDKLLQYVPGMGGGRNVRKISQITEERLKKYKVIMDSMT 379
Query: 111 DGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161
+ EL+N ++ +K RI R+A G+G +E++V +L++ Y V++ +
Sbjct: 380 EKELEN---PEILNKS--RIRRIAIGSGTSERDVIELLNHYRMMKDVIEDI 425
>sp|C3NHT9|SRP54_SULIN Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=srp54 PE=3 SV=1
Length = 447
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 28/166 (16%)
Query: 21 ICCMGDIEGLIDKVNELKLDDNEELIEKIK-----HGQFTLRDMYEQFQNIMKMGPFSQI 75
I MGDIE +++KV L++ E++ +K++ G+ TLRD+Y Q + KMGP S++
Sbjct: 291 ILGMGDIESILEKVK--GLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKV 348
Query: 76 MGMIPGF-------SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTG 128
+ IPG S+D L G E +++R + ++SM EL+N + K
Sbjct: 349 LQHIPGLGVMLPTPSEDQLKLGEE-----KIRRWLAALNSMTYKELEN---PSIIDKS-- 398
Query: 129 RITRVAQGAGVTEKEVKDLISQYTKFAAVVK----KMGGIKGLFKG 170
R+ R+A+G+G+ ++V++L+ Y ++K + G I LF G
Sbjct: 399 RMRRIAEGSGLEVEDVRELLEWYNNMNKLLKMVKRRRGSIDKLFGG 444
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,755,125
Number of Sequences: 539616
Number of extensions: 2895201
Number of successful extensions: 9944
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9682
Number of HSP's gapped (non-prelim): 121
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)