Query psy4310
Match_columns 203
No_of_seqs 125 out of 1024
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 22:18:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 1.8E-53 6E-58 395.0 12.6 154 3-163 275-431 (443)
2 3kl4_A SRP54, signal recogniti 100.0 2.4E-52 8.4E-57 386.1 6.4 154 3-162 274-433 (433)
3 2ffh_A Protein (FFH); SRP54, s 100.0 2.5E-45 8.4E-50 338.5 10.2 145 4-164 274-419 (425)
4 2j37_W Signal recognition part 100.0 1.9E-47 6.6E-52 358.9 -6.3 195 5-202 278-475 (504)
5 1mfq_C SRP54, signal recogniti 100.0 1E-43 3.6E-48 282.0 8.7 115 49-166 10-127 (129)
6 2jqe_A SRP54, signal recogniti 100.0 1.7E-44 5.8E-49 283.2 2.2 112 46-163 2-114 (119)
7 2xxa_A Signal recognition part 100.0 9.1E-43 3.1E-47 321.2 13.2 154 4-163 277-432 (433)
8 1hq1_A Signal recognition part 100.0 2.1E-43 7.2E-48 271.7 5.3 105 53-163 1-105 (105)
9 1qb2_A SRP54, human signal rec 100.0 2.9E-42 9.9E-47 266.9 8.2 106 53-161 1-109 (109)
10 2v3c_C SRP54, signal recogniti 100.0 3E-40 1E-44 304.4 1.0 151 4-161 275-426 (432)
11 1dul_A Signal recognition part 100.0 7.3E-29 2.5E-33 177.8 5.9 64 93-161 6-69 (69)
12 3cuq_A Vacuolar-sorting protei 48.5 22 0.00077 30.0 4.9 68 2-71 49-132 (234)
13 3iwf_A Transcription regulator 44.1 17 0.00057 26.6 3.0 57 99-160 5-73 (107)
14 1fiu_A Type II restriction enz 36.9 25 0.00085 30.7 3.4 41 13-53 224-272 (286)
15 2o3f_A Putative HTH-type trans 34.7 26 0.00089 25.6 2.8 55 100-159 10-76 (111)
16 1k2h_A S100A1, S-100 protein, 28.3 1.2E+02 0.0042 19.6 5.4 44 25-68 31-83 (93)
17 3li6_A Calcium-binding protein 25.5 54 0.0019 19.8 2.8 40 26-65 21-64 (66)
18 1qx2_A Vitamin D-dependent cal 25.0 72 0.0025 19.7 3.4 42 25-66 27-74 (76)
19 3rm1_A Protein S100-B; alpha-h 24.7 91 0.0031 21.0 4.1 43 26-68 32-83 (92)
20 1b0n_B Protein (SINI protein); 24.5 40 0.0014 22.5 2.0 25 129-153 17-41 (57)
21 3j04_B Myosin regulatory light 24.0 42 0.0014 23.4 2.3 40 25-64 96-139 (143)
22 2kz2_A Calmodulin, CAM; TR2C, 23.8 1.2E+02 0.0039 20.4 4.5 15 51-65 43-57 (94)
23 4e17_B Catenin alpha-1; four h 20.4 27 0.00093 21.9 0.5 27 126-152 10-36 (40)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-53 Score=395.03 Aligned_cols=154 Identities=36% Similarity=0.547 Sum_probs=126.5
Q ss_pred ccccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhh--HHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcC
Q psy4310 3 QIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDD--NEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMI 79 (203)
Q Consensus 3 ~~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~--~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~mi 79 (203)
.+|+||||+|||+|||+||||||||.+|+||+++ +++++ ++ +.+|+.+|+|||+|||+|+++++||||+++|++||
T Consensus 275 Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~-~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~ 353 (443)
T 3dm5_A 275 GEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE-DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMI 353 (443)
T ss_dssp SSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-HHHHHHTTCCCHHHHHHHHHHHHTTCC--------
T ss_pred CCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHC
Confidence 3689999999999999999999999999999999 56555 54 99999999999999999999999999999999999
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q psy4310 80 PGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVK 159 (203)
Q Consensus 80 PG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~k 159 (203)
||+++ .+++...+.++++++||++||+|||++||+||++ | ++||++|||+||||+++|||+||+||++|++|||
T Consensus 354 pg~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~---~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~ 427 (443)
T 3dm5_A 354 PGLGY-SLPDDVISIGEERLKKFKVIMDSMTEEELLNPEI---I--NYSRIKRIARGSGTSTKDVKELLDQYRQMKKLFK 427 (443)
T ss_dssp ------------CCCCHHHHHHHHHHHTTSCHHHHHCGGG---C--CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchh-hcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchh---c--ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99985 2344445678999999999999999999999974 4 8999999999999999999999999999999999
Q ss_pred HhcC
Q psy4310 160 KMGG 163 (203)
Q Consensus 160 km~~ 163 (203)
+|++
T Consensus 428 ~~~~ 431 (443)
T 3dm5_A 428 SMNK 431 (443)
T ss_dssp TCCS
T ss_pred HHcC
Confidence 9975
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=2.4e-52 Score=386.12 Aligned_cols=154 Identities=28% Similarity=0.495 Sum_probs=126.0
Q ss_pred ccccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCChhHHhhcC
Q psy4310 3 QIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHG--QFTLRDMYEQFQNIMKMGPFSQIMGMI 79 (203)
Q Consensus 3 ~~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G--~Ftl~Df~~Ql~~i~kMG~l~~i~~mi 79 (203)
.++++|||+|+|++||+|||||||+.+|+|++++ +++++++++++|+.+| +|||+|||+|+++|+||||+++|++||
T Consensus 274 Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~ 353 (433)
T 3kl4_A 274 GEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHI 353 (433)
T ss_dssp CSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHCCSSSGGGGTT
T ss_pred CCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCHHHHHHhC
Confidence 3689999999999999999999999999999999 6878889999999999 999999999999999999999999999
Q ss_pred CCCCccccc---ccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHH
Q psy4310 80 PGFSQDFLS---KGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAA 156 (203)
Q Consensus 80 PG~~~~~~~---~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~k 156 (203)
||+++ .++ +...+.++++++||++||+|||++||+||++ | ++||++|||+||||+++|||+||+||++|++
T Consensus 354 pg~~~-~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~---~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~ 427 (433)
T 3kl4_A 354 PGLGI-MLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNI---I--DKSRMRRIAEGSGLEVEEVRELLEWYNNMNR 427 (433)
T ss_dssp TCCCC-CSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGG---C--CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcc-ccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchh---c--cHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence 99985 233 1345677899999999999999999999974 4 8999999999999999999999999999999
Q ss_pred HHHHhc
Q psy4310 157 VVKKMG 162 (203)
Q Consensus 157 m~kkm~ 162 (203)
|||+|+
T Consensus 428 ~~~~~~ 433 (433)
T 3kl4_A 428 LLKMVK 433 (433)
T ss_dssp HHHTC-
T ss_pred HHHhCC
Confidence 999874
No 3
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=2.5e-45 Score=338.52 Aligned_cols=145 Identities=28% Similarity=0.399 Sum_probs=124.5
Q ss_pred cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310 4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82 (203)
Q Consensus 4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~ 82 (203)
+.++|||+|+|++||+|||||||+.+|+|++++ ++.++++++. + +|||+|||+|++++.||||++++++||||+
T Consensus 274 e~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~----~-~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~ 348 (425)
T 2ffh_A 274 EKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA----K-ELSLEDFLKQMQNLKRLGPFSEILGLLPGV 348 (425)
T ss_dssp SSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC----------------CCCHHHHHHHHHHHHHTCCCTTGGGTSCSC
T ss_pred CChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH----H-hcCHHHHHHHHHHhhCcCChhhhhccCCCc
Confidence 347999999999999999999999999999998 4656665554 3 999999999999999999999999999999
Q ss_pred CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy4310 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG 162 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~ 162 (203)
+. . .+.+++++++|++||+|||++||+||++ | ++||++|||+||||+++|||+||+||++|++|||+|+
T Consensus 349 ~~-~-----~~~~~~~~~~~~~i~~smt~~e~~~p~~---~--~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 417 (425)
T 2ffh_A 349 PQ-G-----LKVDEKAIKRLEAIVLSMTPEERKDPRI---L--NGSRRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLE 417 (425)
T ss_dssp SC-C-----TTSCHHHHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hh-h-----ccccHHHHHHHHHHHHcCCHHHhcCccc---c--ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 73 1 1256899999999999999999999974 3 8999999999999999999999999999999999998
Q ss_pred CC
Q psy4310 163 GI 164 (203)
Q Consensus 163 ~~ 164 (203)
+.
T Consensus 418 ~~ 419 (425)
T 2ffh_A 418 KK 419 (425)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 4
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=1.9e-47 Score=358.93 Aligned_cols=195 Identities=74% Similarity=1.122 Sum_probs=170.9
Q ss_pred ccccccccCCchhHHhhcCCCCHHHHHHHHHhccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCCCc
Q psy4310 5 GYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQ 84 (203)
Q Consensus 5 ~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~ 84 (203)
.+++|++|+|.+|+|+++|+||+.+|+|++++.++++++++.+|+.+|+||++||++|++++.+||++++|++||||++.
T Consensus 278 ~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~ 357 (504)
T 2j37_W 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGT 357 (504)
T ss_dssp STTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCSC
T ss_pred chhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccch
Confidence 47899999999999999999999999999998755556778899999999999999999999999999999999999985
Q ss_pred ccccccchhhHHHHHHHHHHHHhCCChHhhcC---CccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310 85 DFLSKGSEQESMARLKRLMTIMDSMNDGELDN---RDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161 (203)
Q Consensus 85 ~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~---p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm 161 (203)
..++....+.+++.++|+++||+|||++||+| |. +|..++||++|||+||||+++|||+||+||++|++|||+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~---~~~~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 434 (504)
T 2j37_W 358 DFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAK---VFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 434 (504)
T ss_dssp GGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHH---HHHHCTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCC
T ss_pred hhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCc---ccCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 21233334567899999999999999999999 86 4434789999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccCccHHHHHHHHHHHHhcCCHHHHhhcC
Q psy4310 162 GGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG 202 (203)
Q Consensus 162 ~~~~g~~~~~~~~~~~~~~~~~~~~~qm~~~~~p~~~~~mg 202 (203)
++.+++++++.++...+++++.+.++||++++||+++++||
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (504)
T 2j37_W 435 GGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMG 475 (504)
T ss_dssp SCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHH
T ss_pred cccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcC
Confidence 98776666666666666666667788999999999999986
No 5
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=100.00 E-value=1e-43 Score=281.97 Aligned_cols=115 Identities=77% Similarity=1.218 Sum_probs=97.7
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcC---Ccccccccc
Q psy4310 49 IKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDN---RDGAKLFSK 125 (203)
Q Consensus 49 i~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~---p~~i~l~~~ 125 (203)
-..|+|||+|||+|+++|+||||+++|++||||+++..++....+.+++++++|+|||+|||++||+| |+ ||..
T Consensus 10 ~~~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~---ii~~ 86 (129)
T 1mfq_C 10 HKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAK---VFSK 86 (129)
T ss_dssp -CCSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHH---HHHH
T ss_pred cccCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcc---cccC
Confidence 35789999999999999999999999999999998521333445678999999999999999999999 96 4434
Q ss_pred CchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy4310 126 QTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKG 166 (203)
Q Consensus 126 ~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~~~~g 166 (203)
++||++|||+||||+|+|||+||+||++|++|||+|++.+|
T Consensus 87 ~~SRk~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~~~~ 127 (129)
T 1mfq_C 87 QPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 127 (129)
T ss_dssp CTHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCSCC-
T ss_pred ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 78999999999999999999999999999999999987554
No 6
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.7e-44 Score=283.25 Aligned_cols=112 Identities=34% Similarity=0.615 Sum_probs=99.1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCC-CCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccc
Q psy4310 46 IEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP-GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFS 124 (203)
Q Consensus 46 ~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miP-G~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~ 124 (203)
++|+.+|+|||+|||+|+++|+||||+++|++||| |++. .++..+.+.+++++++|+|||+|||++||+||++ |
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~-~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~i---i- 76 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGL-KVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKI---I- 76 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCS-SCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGG---C-
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhh-ccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhh---c-
Confidence 36899999999999999999999999999999999 9975 2332334467899999999999999999999974 4
Q ss_pred cCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy4310 125 KQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGG 163 (203)
Q Consensus 125 ~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm~~ 163 (203)
++||++|||+||||+|+|||+||+||+++++|||+|++
T Consensus 77 -~~SR~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~~ 114 (119)
T 2jqe_A 77 -DSSRIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMKK 114 (119)
T ss_dssp -CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred -CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999875
No 7
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=9.1e-43 Score=321.19 Aligned_cols=154 Identities=27% Similarity=0.421 Sum_probs=131.1
Q ss_pred cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCChhHHhhcCCC
Q psy4310 4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHG-QFTLRDMYEQFQNIMKMGPFSQIMGMIPG 81 (203)
Q Consensus 4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G-~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG 81 (203)
.++++|++|+|++||+||+|+||+.+|+|++++ +++++++++.+|+.+| +||++||++|++++.+|||++++++||||
T Consensus 277 e~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg 356 (433)
T 2xxa_A 277 EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPG 356 (433)
T ss_dssp SSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC---
T ss_pred CCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcC
Confidence 356999999999999999999999999999998 4777789999999999 89999999999999999999999999999
Q ss_pred CCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310 82 FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161 (203)
Q Consensus 82 ~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm 161 (203)
++. ......+..++++++++++||+|||++||+||+++ ++||++|||+||||+++|||+||+||++|++|||+|
T Consensus 357 ~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~-----~~sr~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~ 430 (433)
T 2xxa_A 357 MGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII-----KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 430 (433)
T ss_dssp -------------CHHHHHHHHHHHHTSCHHHHHCGGGC-----CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cch-hhhhhhccccHHHHHHHHHHHHcCCHHHhcCcccc-----CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 975 22122222578899999999999999999999743 899999999999999999999999999999999999
Q ss_pred cC
Q psy4310 162 GG 163 (203)
Q Consensus 162 ~~ 163 (203)
++
T Consensus 431 ~~ 432 (433)
T 2xxa_A 431 KK 432 (433)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 8
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=100.00 E-value=2.1e-43 Score=271.70 Aligned_cols=105 Identities=29% Similarity=0.481 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHH
Q psy4310 53 QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITR 132 (203)
Q Consensus 53 ~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~R 132 (203)
+|||+|||+|+++|+||||+++|++||||+++ .......+.+++++++|+|||+|||++||+||++ | ++||++|
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~-~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~i---i--~~SR~~R 74 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEI---I--KGSRKRR 74 (105)
T ss_dssp CCCHHHHHHHHTC-----------------------------CCSSHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCc-ccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhh---c--CHHHHHH
Confidence 59999999999999999999999999999985 2222334567899999999999999999999974 3 8999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy4310 133 VAQGAGVTEKEVKDLISQYTKFAAVVKKMGG 163 (203)
Q Consensus 133 IA~GSG~~~~eVn~Llkq~~~m~km~kkm~~ 163 (203)
||+||||+|+|||+||+||+++++|||+|++
T Consensus 75 IA~GSG~~v~eVn~LLkqf~~m~kmmk~m~~ 105 (105)
T 1hq1_A 75 IAAGSGMQVQDVNRLLKQFDDMQRMMKKMKK 105 (105)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999864
No 9
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=100.00 E-value=2.9e-42 Score=266.93 Aligned_cols=106 Identities=76% Similarity=1.194 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHhhcCCCCCcccccccchhhHHHHHHHHHHHHhCCChHhhcC---CccccccccCchh
Q psy4310 53 QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDN---RDGAKLFSKQTGR 129 (203)
Q Consensus 53 ~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~---p~~i~l~~~~~SR 129 (203)
+|||+|||+|+++|+||||+++|++||||+++.+++....+.+++++++|+|||+|||++||+| |+ ||..++||
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~---ii~~~~SR 77 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAK---VFSKQPGR 77 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHH---HHHHSTHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCcc---ccccchHH
Confidence 5999999999999999999999999999998522133445678999999999999999999999 96 44222899
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310 130 ITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161 (203)
Q Consensus 130 ~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm 161 (203)
++|||+||||+|+|||+||+||++|++|||+|
T Consensus 78 ~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m 109 (109)
T 1qb2_A 78 IQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 109 (109)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999875
No 10
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=3e-40 Score=304.38 Aligned_cols=151 Identities=30% Similarity=0.518 Sum_probs=118.9
Q ss_pred cccccccccCCchhHHhhcCCCCHHHHHHHHHh-ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChhHHhhcCCCC
Q psy4310 4 IGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82 (203)
Q Consensus 4 ~~~~~lE~F~P~rf~sRiLGmGDi~~Liek~~~-v~~~~~~~l~~ki~~G~Ftl~Df~~Ql~~i~kMG~l~~i~~miPG~ 82 (203)
+++++|++|+|.+|+|+++|+||+.+|+|++++ +++++ +++.+|+.+|+||++||++|++++.||||+++|++||||+
T Consensus 275 e~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~ 353 (432)
T 2v3c_C 275 EGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGF 353 (432)
T ss_dssp SSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTHHHHCCSCCHHHHHHHHTTTTSCC-------------
T ss_pred ccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccc
Confidence 467999999999999999999999999999998 56555 7889999999999999999999999999999999999998
Q ss_pred CcccccccchhhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161 (203)
Q Consensus 83 ~~~~~~~~~~~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm 161 (203)
+. ..+....+.+++++++|++||+|||++||+||++ + ++||++|||+|||++++|||+||+||++|++||+++
T Consensus 354 ~~-~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~---i--~~sr~~rI~~gsg~~~~~v~~ll~~~~~~~~~~~~~ 426 (432)
T 2v3c_C 354 GG-AMPKELSHLTEAKIKKYKVIISSMTKEERENPKI---I--KASRIRRIARGSGTTENDVREVLRYYETTKNAIDKL 426 (432)
T ss_dssp -----------CCHHHHHHHHHHHTTSCHHHHSSCTT---C--CHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCCC
T ss_pred cc-ccchhhhcccHHHHHHHHHHHHhCCHHHhhCccc---c--CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 74 2222223346789999999999999999999974 3 899999999999999999999999999999998765
No 11
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=99.95 E-value=7.3e-29 Score=177.77 Aligned_cols=64 Identities=27% Similarity=0.401 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHhCCChHhhcCCccccccccCchhHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4310 93 QESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161 (203)
Q Consensus 93 ~~~~~~lk~~~~IIdSMT~~Er~~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq~~~m~km~kkm 161 (203)
+.+++++++|++||+||||+||+||++ | ++||++|||+||||+++|||+||+||++|++|||+|
T Consensus 6 ~~~e~~lkr~~aII~SMT~~Er~nP~i---i--~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m 69 (69)
T 1dul_A 6 FLEQKVLVRMEAIINSMTMKERAKPEI---I--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69 (69)
T ss_dssp HHHCCHHHHHHHHHHTSCHHHHHCGGG---C--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHcCCHHHHhCccc---c--CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999974 4 799999999999999999999999999999999975
No 12
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=48.53 E-value=22 Score=30.05 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=46.4
Q ss_pred cccccccccccCCchhHHhhcCCCCH-HHHHHHHHhc--c-Hh------hHHHHHHHHHc------CCCCHHHHHHHHHH
Q psy4310 2 LQIGYLMLCHYLNFPLYCGICCMGDI-EGLIDKVNEL--K-LD------DNEELIEKIKH------GQFTLRDMYEQFQN 65 (203)
Q Consensus 2 ~~~~~~~lE~F~P~rf~sRiLGmGDi-~~Liek~~~v--~-~~------~~~~l~~ki~~------G~Ftl~Df~~Ql~~ 65 (203)
+.+|+|-|. .+++|-+.+||.||. -.|.-++-++ . .+ .-.++..++.+ ...|-+|.+..++.
T Consensus 49 ~siGVDPla--s~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~ 126 (234)
T 3cuq_A 49 ATIGVDPLA--SGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKK 126 (234)
T ss_dssp HHHTCCTTS--CTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHH
T ss_pred HHcCCCccc--CCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHH
Confidence 457999665 346799999999997 2333344332 1 11 22456666654 47899999999999
Q ss_pred HHhcCC
Q psy4310 66 IMKMGP 71 (203)
Q Consensus 66 i~kMG~ 71 (203)
+..+|+
T Consensus 127 L~~LG~ 132 (234)
T 3cuq_A 127 LKALGT 132 (234)
T ss_dssp HGGGBT
T ss_pred HHhcCC
Confidence 999985
No 13
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=44.15 E-value=17 Score=26.65 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCChHhhc-------CCccccccccCchhHHHhhccCCCCHHHHHHHHHH-----HHHHHHHHHH
Q psy4310 99 LKRLMTIMDSMNDGELD-------NRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQ-----YTKFAAVVKK 160 (203)
Q Consensus 99 lk~~~~IIdSMT~~Er~-------~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq-----~~~m~km~kk 160 (203)
+.++....+++|+.|+. ||+- + ...-+.-+|+-+||++.-|.++.+. |..++.-+..
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~--~---~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~~ 73 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHK--V---VNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSK 73 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHH--H---TTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHH--H---HHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566667788888875 5541 1 2345899999999999999999865 7777776654
No 14
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Probab=36.90 E-value=25 Score=30.65 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.8
Q ss_pred CCchhHHhhcCCCCHH--------HHHHHHHhccHhhHHHHHHHHHcCC
Q psy4310 13 LNFPLYCGICCMGDIE--------GLIDKVNELKLDDNEELIEKIKHGQ 53 (203)
Q Consensus 13 ~P~rf~sRiLGmGDi~--------~Liek~~~v~~~~~~~l~~ki~~G~ 53 (203)
-|.|++|--||-|||. .|++.+++...+++.++..-+-.|+
T Consensus 224 lPSRlaSlAlGTGDIDcVYHfAL~EL~~av~~~~~~d~~~~l~~mi~G~ 272 (286)
T 1fiu_A 224 TPSRISSIALGTGEIDCVYHFALYELEQILQSLNYEDALDLFYIMVNGK 272 (286)
T ss_dssp CHHHHHHHHSSSSSCSEEEETTHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHccCCccceeeehhHHHHHHHHHHhCChhHHHHHHHHhccC
Confidence 4899999999999984 6777777765577777777777764
No 15
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=34.74 E-value=26 Score=25.58 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHHhCCChHhhc-------CCccccccccCchhHHHhhccCCCCHHHHHHHHHH-----HHHHHHHHH
Q psy4310 100 KRLMTIMDSMNDGELD-------NRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQ-----YTKFAAVVK 159 (203)
Q Consensus 100 k~~~~IIdSMT~~Er~-------~p~~i~l~~~~~SR~~RIA~GSG~~~~eVn~Llkq-----~~~m~km~k 159 (203)
.++....+++|+.|+. ||+- + ..--+.-||+-+||++.-|.++.+. |..++.-+.
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~--~---~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~~l~ 76 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHX--A---IESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVA 76 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHH--H---HTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHH--H---HhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555566788888875 4431 1 1234789999999999999999865 566665543
No 16
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=28.26 E-value=1.2e+02 Score=19.57 Aligned_cols=44 Identities=7% Similarity=0.308 Sum_probs=29.7
Q ss_pred CCHHHHHHH-----HHh-ccHhhHHHHHHHH---HcCCCCHHHHHHHHHHHHh
Q psy4310 25 GDIEGLIDK-----VNE-LKLDDNEELIEKI---KHGQFTLRDMYEQFQNIMK 68 (203)
Q Consensus 25 GDi~~Liek-----~~~-v~~~~~~~l~~ki---~~G~Ftl~Df~~Ql~~i~k 68 (203)
-++..++.. +.. +..++..++...+ ..|..|+++|+.-+..+.+
T Consensus 31 ~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~ 83 (93)
T 1k2h_A 31 KELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (93)
T ss_dssp HHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 345555554 433 4556667777666 4679999999998877654
No 17
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=25.47 E-value=54 Score=19.76 Aligned_cols=40 Identities=8% Similarity=0.223 Sum_probs=24.4
Q ss_pred CHHHHHHHHHh-ccHhhHHHHHHHH---HcCCCCHHHHHHHHHH
Q psy4310 26 DIEGLIDKVNE-LKLDDNEELIEKI---KHGQFTLRDMYEQFQN 65 (203)
Q Consensus 26 Di~~Liek~~~-v~~~~~~~l~~ki---~~G~Ftl~Df~~Ql~~ 65 (203)
++..++..... +..++..++.+.+ ..|..|+++|...+..
T Consensus 21 e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 21 EVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence 44445554433 3445556666665 3578999999887654
No 18
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=24.95 E-value=72 Score=19.72 Aligned_cols=42 Identities=14% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHh-c--cHhhHHHHHHHH---HcCCCCHHHHHHHHHHH
Q psy4310 25 GDIEGLIDKVNE-L--KLDDNEELIEKI---KHGQFTLRDMYEQFQNI 66 (203)
Q Consensus 25 GDi~~Liek~~~-v--~~~~~~~l~~ki---~~G~Ftl~Df~~Ql~~i 66 (203)
.++..++..+.. + ..++..++...+ ..|..|+++|+..+..+
T Consensus 27 ~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 74 (76)
T 1qx2_A 27 EELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI 74 (76)
T ss_dssp HHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 345555555543 4 455666676666 25688999998877654
No 19
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=24.68 E-value=91 Score=20.97 Aligned_cols=43 Identities=14% Similarity=0.358 Sum_probs=28.1
Q ss_pred CHHHHHHH-----HHh-ccHhhHHHHHHHH---HcCCCCHHHHHHHHHHHHh
Q psy4310 26 DIEGLIDK-----VNE-LKLDDNEELIEKI---KHGQFTLRDMYEQFQNIMK 68 (203)
Q Consensus 26 Di~~Liek-----~~~-v~~~~~~~l~~ki---~~G~Ftl~Df~~Ql~~i~k 68 (203)
++..++.. +.. .+.++..++.+.+ ..|+.+|++|+.-+..+..
T Consensus 32 EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~ 83 (92)
T 3rm1_A 32 ELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITT 83 (92)
T ss_dssp HHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH
Confidence 45555555 322 3445666666665 4589999999998887664
No 20
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.46 E-value=40 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=19.9
Q ss_pred hHHHhhccCCCCHHHHHHHHHHHHH
Q psy4310 129 RITRVAQGAGVTEKEVKDLISQYTK 153 (203)
Q Consensus 129 R~~RIA~GSG~~~~eVn~Llkq~~~ 153 (203)
+..+-|+--|.|++||.++|.-++.
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l~~~ 41 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLLNKK 41 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 4566789999999999999987763
No 21
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=24.00 E-value=42 Score=23.41 Aligned_cols=40 Identities=13% Similarity=0.385 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHh-ccHhhHHHHHHHH---HcCCCCHHHHHHHHH
Q psy4310 25 GDIEGLIDKVNE-LKLDDNEELIEKI---KHGQFTLRDMYEQFQ 64 (203)
Q Consensus 25 GDi~~Liek~~~-v~~~~~~~l~~ki---~~G~Ftl~Df~~Ql~ 64 (203)
-++..++..+.. +..++..++.+.+ ..|..|+++|+..+.
T Consensus 96 ~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 139 (143)
T 3j04_B 96 DHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILK 139 (143)
T ss_dssp TTHHHHHHTSSSCCCHHHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence 344444443322 3444555555555 245666666665543
No 22
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=23.76 E-value=1.2e+02 Score=20.39 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=7.2
Q ss_pred cCCCCHHHHHHHHHH
Q psy4310 51 HGQFTLRDMYEQFQN 65 (203)
Q Consensus 51 ~G~Ftl~Df~~Ql~~ 65 (203)
.|..+.++|..-++.
T Consensus 43 ~G~I~~~El~~~l~~ 57 (94)
T 2kz2_A 43 NGYISAAELRHVMTN 57 (94)
T ss_dssp CSCBCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHH
Confidence 344555555544444
No 23
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=20.42 E-value=27 Score=21.93 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=19.7
Q ss_pred CchhHHHhhccCCCCHHHHHHHHHHHH
Q psy4310 126 QTGRITRVAQGAGVTEKEVKDLISQYT 152 (203)
Q Consensus 126 ~~SR~~RIA~GSG~~~~eVn~Llkq~~ 152 (203)
..+|+.||...+-.=-+-+..||.+|.
T Consensus 10 r~~rkerIv~eCnavrqALQdLlseY~ 36 (40)
T 4e17_B 10 RDDRRERIVAECNAVRQALQDLLSEYM 36 (40)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999997777655666667777774
Done!