Your job contains 1 sequence.
>psy4310
MLQIGYLMLCHYLNFPLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMY
EQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGA
KLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQT
QMMKLNQQMAKMMDPRVLHQMGE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4310
(203 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-818 - symbol:srp54 "signal recogniti... 781 1.3e-77 1
UNIPROTKB|Q2T9U1 - symbol:SRP54 "Signal recognition parti... 776 4.3e-77 1
UNIPROTKB|P61010 - symbol:SRP54 "Signal recognition parti... 776 4.3e-77 1
UNIPROTKB|G3V4F7 - symbol:SRP54 "Signal recognition parti... 776 4.3e-77 1
UNIPROTKB|P61011 - symbol:SRP54 "Signal recognition parti... 776 4.3e-77 1
UNIPROTKB|F2Z5M9 - symbol:SRP54 "Uncharacterized protein"... 776 4.3e-77 1
UNIPROTKB|Q4R965 - symbol:SRP54 "Signal recognition parti... 776 4.3e-77 1
UNIPROTKB|Q5R4R6 - symbol:SRP54 "Signal recognition parti... 776 4.3e-77 1
RGD|621390 - symbol:Srp54 "signal recognition particle 54... 776 4.3e-77 1
UNIPROTKB|E1C6G6 - symbol:SRP54 "Uncharacterized protein"... 772 1.1e-76 1
RGD|2323636 - symbol:Fam177a1 "family with sequence simil... 770 1.9e-76 1
FB|FBgn0010747 - symbol:Srp54k "Signal recognition partic... 764 8.1e-76 1
WB|WBGene00009012 - symbol:F21D5.7 species:6239 "Caenorha... 622 9.0e-61 1
TAIR|locus:2028563 - symbol:AT1G48900 species:3702 "Arabi... 360 5.2e-33 1
TAIR|locus:2157809 - symbol:AT5G49500 "AT5G49500" species... 341 5.5e-31 1
GENEDB_PFALCIPARUM|PF14_0477 - symbol:PF14_0477 "signal r... 325 4.7e-29 1
UNIPROTKB|Q8IKX4 - symbol:PF14_0477 "Signal recognition p... 325 4.7e-29 1
TAIR|locus:2037803 - symbol:ATHSRP54A "signal recognition... 300 2.6e-26 1
POMBASE|SPCC188.06c - symbol:srp54 "signal recognition pa... 295 1.5e-25 1
CGD|CAL0003314 - symbol:SRP54 species:5476 "Candida albic... 279 1.1e-23 1
DICTYBASE|DDB_G0275455 - symbol:srp54 "signal recognition... 243 8.3e-20 1
SGD|S000006292 - symbol:SRP54 "Signal recognition particl... 225 1.5e-19 2
TIGR_CMR|GSU_0642 - symbol:GSU_0642 "signal recognition p... 197 5.4e-15 1
TIGR_CMR|CHY_1434 - symbol:CHY_1434 "signal recognition p... 188 5.1e-14 1
TIGR_CMR|SPO_3246 - symbol:SPO_3246 "signal recognition p... 182 3.0e-13 1
TAIR|locus:2150620 - symbol:CPSRP54 "chloroplast signal r... 175 2.1e-12 1
NCBI_NP|NP_355632.2 - symbol:ffh "signal recognition part... 173 3.0e-12 1
TIGR_CMR|CJE_0809 - symbol:CJE_0809 "signal recognition p... 170 4.6e-12 1
UNIPROTKB|P66844 - symbol:ffh "Signal recognition particl... 167 1.3e-11 1
TIGR_CMR|BA_3983 - symbol:BA_3983 "signal recognition par... 162 3.5e-11 1
TIGR_CMR|APH_0349 - symbol:APH_0349 "signal recognition p... 159 7.3e-11 1
TIGR_CMR|CPS_4073 - symbol:CPS_4073 "signal recognition p... 158 9.9e-11 1
UNIPROTKB|O07347 - symbol:ffh "Signal recognition particl... 157 1.1e-10 1
TIGR_CMR|ECH_0475 - symbol:ECH_0475 "signal recognition p... 155 2.0e-10 1
UNIPROTKB|P0AGD7 - symbol:ffh species:83333 "Escherichia ... 149 9.0e-10 1
TIGR_CMR|SO_1356 - symbol:SO_1356 "signal recognition par... 148 2.3e-09 1
TIGR_CMR|VC_0560 - symbol:VC_0560 "signal recognition par... 147 4.6e-09 1
UNIPROTKB|Q97QD2 - symbol:ffh "Signal recognition particl... 141 9.2e-08 1
TIGR_CMR|CBU_0450 - symbol:CBU_0450 "signal recognition p... 136 4.3e-07 1
TIGR_CMR|NSE_0540 - symbol:NSE_0540 "signal recognition p... 114 0.00026 1
>ZFIN|ZDB-GENE-040426-818 [details] [associations]
symbol:srp54 "signal recognition particle 54"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 ZFIN:ZDB-GENE-040426-818 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 GO:GO:0048500 HSSP:P70722 EMBL:BX088587
EMBL:BC045474 EMBL:BC067588 IPI:IPI00483938 RefSeq:NP_957282.1
UniGene:Dr.7990 SMR:Q7ZVN5 STRING:Q7ZVN5 Ensembl:ENSDART00000018678
Ensembl:ENSDART00000133424 GeneID:393963 KEGG:dre:393963
InParanoid:Q7ZVN5 NextBio:20814934 Uniprot:Q7ZVN5
Length = 504
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 149/187 (79%), Positives = 168/187 (89%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNEELI+K+KHGQFTLRDMYEQFQNIMKMGPF QI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEELIDKLKHGQFTLRDMYEQFQNIMKMGPFGQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
MGMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELDN+DGAKLFSKQ RI RVA+
Sbjct: 349 MGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDNKDGAKLFSKQPNRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNVN +QM KLNQQMAKMMDP
Sbjct: 409 GSGVATRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVNPSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>UNIPROTKB|Q2T9U1 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008144 "drug binding" evidence=ISS]
[GO:0008312 "7S RNA binding" evidence=ISS] [GO:0019003 "GDP
binding" evidence=ISS] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 EMBL:BC111270
IPI:IPI00698247 RefSeq:NP_001033290.1 UniGene:Bt.36654 HSSP:Q6MTB9
ProteinModelPortal:Q2T9U1 SMR:Q2T9U1 STRING:Q2T9U1 PRIDE:Q2T9U1
Ensembl:ENSBTAT00000025405 GeneID:614017 KEGG:bta:614017 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 InParanoid:Q2T9U1
OMA:GQQVVKI OrthoDB:EOG45MN54 NextBio:20898897 Uniprot:Q2T9U1
Length = 504
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>UNIPROTKB|P61010 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=ISS;IMP] [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER"
evidence=ISS;IMP] [GO:0003924 "GTPase activity" evidence=ISS]
[GO:0005525 "GTP binding" evidence=ISS] [GO:0008144 "drug binding"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006616 "SRP-dependent
cotranslational protein targeting to membrane, translocation"
evidence=IDA] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=IMP]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005829 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0006616 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 Reactome:REACT_146484
GO:GO:0030942 PDB:2J37 PDBsum:2J37 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 EMBL:X16318 PIR:S05197 RefSeq:NP_001003272.1
UniGene:Cfa.3810 PDB:2GO5 PDBsum:2GO5 ProteinModelPortal:P61010
SMR:P61010 STRING:P61010 PRIDE:P61010 Ensembl:ENSCAFT00000021158
GeneID:403953 KEGG:cfa:403953 InParanoid:P61010
EvolutionaryTrace:P61010 NextBio:20817443 Uniprot:P61010
Length = 504
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>UNIPROTKB|G3V4F7 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 Pfam:PF00448 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0048500 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V4F7 SMR:G3V4F7
Ensembl:ENST00000555557 ArrayExpress:G3V4F7 Bgee:G3V4F7
Uniprot:G3V4F7
Length = 440
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 225 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 284
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 285 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 344
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 345 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 404
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 405 RVLHHMG 411
>UNIPROTKB|P61011 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0008144 "drug
binding" evidence=IDA] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IDA] [GO:0008312 "7S RNA binding" evidence=IDA]
[GO:0006616 "SRP-dependent cotranslational protein targeting to
membrane, translocation" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IDA]
[GO:0042493 "response to drug" evidence=IDA] [GO:0045047 "protein
targeting to ER" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC;TAS] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0006184 "GTP catabolic process" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005829 GO:GO:0005730
GO:GO:0042493 GO:GO:0006412 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0043021 GO:GO:0019003
TCDB:3.A.5.9.1 GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0006616
GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0030942 PDB:1MFQ PDBsum:1MFQ CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI OrthoDB:EOG45MN54 EMBL:X86373 EMBL:U51920 EMBL:AK300824
EMBL:AK312853 EMBL:AL049776 EMBL:BC000652 EMBL:BC003389
IPI:IPI00009822 IPI:IPI00929464 PIR:S54143 RefSeq:NP_001139754.1
RefSeq:NP_003127.1 UniGene:Hs.167535 PDB:1QB2 PDBsum:1QB2
ProteinModelPortal:P61011 SMR:P61011 IntAct:P61011 STRING:P61011
PhosphoSite:P61011 DMDM:46577650 PaxDb:P61011 PRIDE:P61011
DNASU:6729 Ensembl:ENST00000216774 Ensembl:ENST00000546080
Ensembl:ENST00000556994 GeneID:6729 KEGG:hsa:6729 UCSC:uc001wso.3
GeneCards:GC14P035452 HGNC:HGNC:11301 HPA:HPA048977 MIM:604857
neXtProt:NX_P61011 PharmGKB:PA36125 InParanoid:P61011
PhylomeDB:P61011 ChiTaRS:SRP54 EvolutionaryTrace:P61011
GenomeRNAi:6729 NextBio:26248 ArrayExpress:P61011 Bgee:P61011
CleanEx:HS_SRP54 Genevestigator:P61011 GermOnline:ENSG00000100883
Uniprot:P61011
Length = 504
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>UNIPROTKB|F2Z5M9 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0008144
"drug binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:CU469145
RefSeq:XP_001927834.3 ProteinModelPortal:F2Z5M9 SMR:F2Z5M9
PRIDE:F2Z5M9 Ensembl:ENSSSCT00000002187 GeneID:100154361
KEGG:ssc:100154361 Uniprot:F2Z5M9
Length = 504
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>UNIPROTKB|Q4R965 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9541 "Macaca fascicularis" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=ISS] [GO:0019003 "GDP binding" evidence=ISS]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=ISS] [GO:0042493 "response to drug" evidence=ISS]
[GO:0045047 "protein targeting to ER" evidence=ISS] [GO:0003924
"GTPase activity" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005634 GO:GO:0042493
GO:GO:0016607 GO:GO:0008144 GO:GO:0003924 GO:GO:0006184
GO:GO:0019003 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0045047 GO:GO:0005786 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 HOVERGEN:HBG061072 EMBL:AB168231
ProteinModelPortal:Q4R965 SMR:Q4R965 PRIDE:Q4R965 Uniprot:Q4R965
Length = 504
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>UNIPROTKB|Q5R4R6 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9601 "Pongo abelii" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=ISS]
[GO:0006184 "GTP catabolic process" evidence=ISS] [GO:0008144 "drug
binding" evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=ISS] [GO:0042493
"response to drug" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] [GO:0003924 "GTPase activity" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 HOVERGEN:HBG061072 EMBL:CR861178 RefSeq:NP_001126912.1
UniGene:Pab.3814 ProteinModelPortal:Q5R4R6 SMR:Q5R4R6 PRIDE:Q5R4R6
GeneID:100173929 KEGG:pon:100173929 InParanoid:Q5R4R6
Uniprot:Q5R4R6
Length = 504
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>RGD|621390 [details] [associations]
symbol:Srp54 "signal recognition particle 54A" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003924 "GTPase activity" evidence=IEA;ISO] [GO:0005525 "GTP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA;ISO] [GO:0006184 "GTP catabolic
process" evidence=ISO] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008312 "7S RNA binding" evidence=IEA;ISO]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0019003 "GDP binding"
evidence=IEA;ISO] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEA;ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045047 "protein targeting to ER"
evidence=ISO] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:621390 GO:GO:0005525 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI EMBL:BC079117 IPI:IPI00391089 RefSeq:NP_446323.1
UniGene:Rn.24880 ProteinModelPortal:Q6AYB5 SMR:Q6AYB5 STRING:Q6AYB5
PRIDE:Q6AYB5 Ensembl:ENSRNOT00000049937 GeneID:116650
KEGG:rno:116650 UCSC:RGD:621390 InParanoid:Q6AYB5 NextBio:619403
ArrayExpress:Q6AYB5 Genevestigator:Q6AYB5
GermOnline:ENSRNOG00000032776 Uniprot:Q6AYB5
Length = 504
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 148/187 (79%), Positives = 170/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>UNIPROTKB|E1C6G6 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0008144 GO:GO:0003924
GO:GO:0043021 GO:GO:0019003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729
GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:AADN02003392
IPI:IPI00581279 RefSeq:XP_421238.1 ProteinModelPortal:E1C6G6
PRIDE:E1C6G6 Ensembl:ENSGALT00000016327 GeneID:423322
KEGG:gga:423322 NextBio:20825811 Uniprot:E1C6G6
Length = 504
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 147/187 (78%), Positives = 169/187 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNVN +Q+ KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVNPSQLAKLNQQMAKMMDP 468
Query: 196 RVLHQMG 202
RVLH MG
Sbjct: 469 RVLHHMG 475
>RGD|2323636 [details] [associations]
symbol:Fam177a1 "family with sequence similarity 177, member A1"
species:10116 "Rattus norvegicus" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:2323636 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
IPI:IPI00387699 PRIDE:F1M7P5 Ensembl:ENSRNOT00000052076
ArrayExpress:F1M7P5 Uniprot:F1M7P5
Length = 500
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 147/186 (79%), Positives = 169/186 (90%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLDDNE LIEK+KHGQFTLRDMYEQFQNIMKMGPFSQI
Sbjct: 289 PFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQI 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
+GMIPGF DF+SKG+EQESMARLK+LMTIMDSMND ELD+ DGAK+FSKQ GRI RVA+
Sbjct: 349 LGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVAR 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
G+GV+ ++V++L++QYTKFA +VKKMGGIKGLFKGGD++KNV+Q+QM KLNQQMAKMMDP
Sbjct: 409 GSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDP 468
Query: 196 RVLHQM 201
RVLH M
Sbjct: 469 RVLHHM 474
>FB|FBgn0010747 [details] [associations]
symbol:Srp54k "Signal recognition particle protein 54k"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0005048 "signal sequence binding" evidence=ISS] [GO:0005525
"GTP binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0005048
GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 HSSP:P70722 EMBL:AY094660
ProteinModelPortal:Q8T3P8 SMR:Q8T3P8 STRING:Q8T3P8 PaxDb:Q8T3P8
PRIDE:Q8T3P8 FlyBase:FBgn0010747 InParanoid:Q8T3P8
OrthoDB:EOG44TMQ3 ChiTaRS:Srp54k ArrayExpress:Q8T3P8 Bgee:Q8T3P8
Uniprot:Q8T3P8
Length = 569
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 146/187 (78%), Positives = 165/187 (88%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQI 75
P + MGDIEGLIDKVNELKLD N+EL+EKIKHG FT+RDMYEQFQNIMKMGPFSQ
Sbjct: 289 PFVSKLLGMGDIEGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQF 348
Query: 76 MGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQ 135
M MIPGFSQDF++KG EQESMAR+KR+MT+MDSM+D ELDNRDGAKLFSKQ R RVAQ
Sbjct: 349 MNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQPNRCVRVAQ 408
Query: 136 GAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDP 195
GAGV E+EVK+LI+ YTKF+AVVKKMGG+KGLFK GD+TKNVN TQM KLNQQ+AKM+DP
Sbjct: 409 GAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNVNPTQMAKLNQQIAKMIDP 468
Query: 196 RVLHQMG 202
R+L QMG
Sbjct: 469 RMLQQMG 475
>WB|WBGene00009012 [details] [associations]
symbol:F21D5.7 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008312 "7S
RNA binding" evidence=IEA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0006915 GO:GO:0002119 GO:GO:0003924
GO:GO:0006184 GO:GO:0000003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 EMBL:Z68161 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
OMA:GQQVVKI GO:GO:0048500 EMBL:Z54271 PIR:A88763 PIR:T21140
RefSeq:NP_501507.1 HSSP:P70722 ProteinModelPortal:G5EE80 SMR:G5EE80
EnsemblMetazoa:F21D5.7.1 EnsemblMetazoa:F21D5.7.2 GeneID:259584
KEGG:cel:CELE_F21D5.7 CTD:259584 WormBase:F21D5.7 NextBio:952170
Uniprot:G5EE80
Length = 496
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 118/182 (64%), Positives = 152/182 (83%)
Query: 24 MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
MGDI GL+D VN++ + DN+EL+ ++K GQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF
Sbjct: 297 MGDIAGLVDMVNDIGIQDNKELVGRLKQGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFG 356
Query: 84 QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
+F++KG+EQES+ RLKR+MT+MDSM+D ELD+ ++LF+K+ R+ RVA+G+G ++E
Sbjct: 357 SEFMTKGNEQESVNRLKRMMTVMDSMSDKELDHPKASELFTKEPNRVARVARGSGSHQQE 416
Query: 144 VKDLISQYTKFAAVVKKMGGIKGLFKG--GDIT-KNVNQTQMMKLNQQMAKMMDPRVLHQ 200
V+DL++QY KF+ VVKK+G IKGLF G GDI KN+N +M +LNQQMAKMMDPRVL Q
Sbjct: 417 VRDLLAQYKKFSDVVKKIGSIKGLFNGKNGDINPKNMNPAKMAQLNQQMAKMMDPRVLQQ 476
Query: 201 MG 202
MG
Sbjct: 477 MG 478
>TAIR|locus:2028563 [details] [associations]
symbol:AT1G48900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003924 GO:GO:0006184 EMBL:AC084414 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 ProtClustDB:CLSN2686827
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 EMBL:U12127
EMBL:AY054273 EMBL:AY052331 EMBL:AF446864 IPI:IPI00531486
PIR:G96526 RefSeq:NP_564535.1 UniGene:At.23838
ProteinModelPortal:P49967 SMR:P49967 STRING:P49967 PaxDb:P49967
PRIDE:P49967 EnsemblPlants:AT1G48900.1 GeneID:841312
KEGG:ath:AT1G48900 GeneFarm:1889 TAIR:At1g48900 InParanoid:P49967
OMA:NVQHMSK PhylomeDB:P49967 Genevestigator:P49967
GermOnline:AT1G48900 Uniprot:P49967
Length = 495
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 76/191 (39%), Positives = 123/191 (64%)
Query: 16 PLYCGICCMGDIEGLIDKVNELKLDDNE-ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQ 74
P + MGD G +DK+ E+ D + EL+EK+ G FTLR MY+QFQNI+ MGP +
Sbjct: 289 PFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKE 348
Query: 75 IMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVA 134
+ M+PG S + + KG E+ES A++KR MT+MDSM + ELD+ + K+F++ R+ R+A
Sbjct: 349 VFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSN-PKVFNES--RMMRIA 405
Query: 135 QGAGVTEKEVKDLISQYTKFAAVVKKMGGIKGLFKGGD---ITKNVNQTQMMKLNQQMAK 191
+G+G +EV +++ +Y + A + KM G+K + K GD +++N+N Q M+K
Sbjct: 406 RGSGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKNGDMSALSRNMNA-------QHMSK 457
Query: 192 MMDPRVLHQMG 202
++ P++L Q+G
Sbjct: 458 VLPPQMLKQIG 468
>TAIR|locus:2157809 [details] [associations]
symbol:AT5G49500 "AT5G49500" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005525 "GTP
binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=IEA;ISS] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003924 GO:GO:0006184 EMBL:AB023033
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106
ProtClustDB:CLSN2686827 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 EMBL:U12126 IPI:IPI00534798 RefSeq:NP_199761.1
UniGene:At.29781 ProteinModelPortal:P49966 SMR:P49966 IntAct:P49966
STRING:P49966 PRIDE:P49966 GeneID:835010 KEGG:ath:AT5G49500
TAIR:At5g49500 InParanoid:P49966 Genevestigator:P49966
GermOnline:AT5G49500 Uniprot:P49966
Length = 497
Score = 341 (125.1 bits), Expect = 5.5e-31, P = 5.5e-31
Identities = 68/179 (37%), Positives = 118/179 (65%)
Query: 25 GDIEGLIDKVNELKLDDNE-ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
GD+ G ++K+ E+ D + EL+E + HG+FTLR MY+QFQN++ MGP ++ M+PG
Sbjct: 300 GDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMR 359
Query: 84 QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
+ + +G E+ES A++KR MT+MDSM + ELD+ + K+F++ RI R+A+G+G +E
Sbjct: 360 AEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSN-PKVFNES--RIMRIARGSGRIVRE 416
Query: 144 VKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG 202
V +++ +Y + + K+ G+K L KG N++ K +QQ++K++ ++L Q+G
Sbjct: 417 VMEMLEEYKRLTTMWGKVKGLKNLEKG-----NMSALSKNKNSQQLSKVLPAQMLKQIG 470
>GENEDB_PFALCIPARUM|PF14_0477 [details] [associations]
symbol:PF14_0477 "signal recognition particle
54 kDa protein, putative" species:5833 "Plasmodium falciparum"
[GO:0005048 "signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 325 (119.5 bits), Expect = 4.7e-29, P = 4.7e-29
Identities = 69/180 (38%), Positives = 108/180 (60%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
+GDI GL+ + E + +D EL+ ++ G+F LRDMY+QFQN+ KMG S++M MIPGF
Sbjct: 297 LGDISGLVSTIKEVIDIDKQPELMNRLSKGKFVLRDMYDQFQNVFKMGSLSKVMSMIPGF 356
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
+ +SKG+E+E + ++K+ M IMDSM + ELD + R R+ +G+G +
Sbjct: 357 GNNLISKGTEKEGIDKIKKFMVIMDSMTNEELDC-----IKPLNDSRCLRIVKGSGTRLQ 411
Query: 143 EVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG 202
++K+L+ Q+ +V KMG + GL + NQ Q M +M +MDP +L Q+G
Sbjct: 412 DIKELLEQFKFLQKMVVKMGKL-GLRENNISNLMRNQKQFMS---KMNNIMDPNMLKQLG 467
>UNIPROTKB|Q8IKX4 [details] [associations]
symbol:PF14_0477 "Signal recognition particle SRP54,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005048
"signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 325 (119.5 bits), Expect = 4.7e-29, P = 4.7e-29
Identities = 69/180 (38%), Positives = 108/180 (60%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
+GDI GL+ + E + +D EL+ ++ G+F LRDMY+QFQN+ KMG S++M MIPGF
Sbjct: 297 LGDISGLVSTIKEVIDIDKQPELMNRLSKGKFVLRDMYDQFQNVFKMGSLSKVMSMIPGF 356
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
+ +SKG+E+E + ++K+ M IMDSM + ELD + R R+ +G+G +
Sbjct: 357 GNNLISKGTEKEGIDKIKKFMVIMDSMTNEELDC-----IKPLNDSRCLRIVKGSGTRLQ 411
Query: 143 EVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG 202
++K+L+ Q+ +V KMG + GL + NQ Q M +M +MDP +L Q+G
Sbjct: 412 DIKELLEQFKFLQKMVVKMGKL-GLRENNISNLMRNQKQFMS---KMNNIMDPNMLKQLG 467
>TAIR|locus:2037803 [details] [associations]
symbol:ATHSRP54A "signal recognition particle 54 kDa
subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;ISS] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0051607
"defense response to virus" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003924 GO:GO:0006184 EMBL:AC007591 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 EMBL:L19997
EMBL:AF344329 EMBL:AY086187 IPI:IPI00526094 PIR:S42550
RefSeq:NP_563970.1 UniGene:At.24597 ProteinModelPortal:P37106
SMR:P37106 DIP:DIP-59002N STRING:P37106 PaxDb:P37106 PRIDE:P37106
EnsemblPlants:AT1G15310.1 GeneID:838100 KEGG:ath:AT1G15310
TAIR:At1g15310 eggNOG:COG0541 HOGENOM:HOG000036165
InParanoid:P37106 KO:K03106 OMA:KVIPPQM PhylomeDB:P37106
ProtClustDB:CLSN2686827 Genevestigator:P37106 GermOnline:AT1G15310
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
Uniprot:P37106
Length = 479
Score = 300 (110.7 bits), Expect = 2.6e-26, P = 2.6e-26
Identities = 71/179 (39%), Positives = 112/179 (62%)
Query: 25 GDIEGLIDKVNELKLDD-NEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
GD GL+DK+ E+ D EL+E + G FTLR MY+QFQ +++ P +Q+ M+PG S
Sbjct: 298 GDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLPGIS 356
Query: 84 QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
+ + KG +ES ++KR MT+MDSM + ELD+ + K+F++ RI R+A+G+G +E
Sbjct: 357 AEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPN-PKIFNES--RIMRIARGSGRLVRE 413
Query: 144 VKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQMG 202
V +++ +Y + A K M GIK + K GD++K V QM+K M+ + ++ QMG
Sbjct: 414 VMEMLEEYKRIA---KTMKGIK-IPKNGDMSK-VIPPQMLKQMGGMSGLQS--LMKQMG 465
>POMBASE|SPCC188.06c [details] [associations]
symbol:srp54 "signal recognition particle subunit Srp54"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=IMP] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IMP] [GO:0008312 "7S RNA binding" evidence=IMP]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPCC188.06c
GO:GO:0005525 GO:GO:0005783 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003924 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
OMA:GQQVVKI EMBL:X51613 EMBL:M55518 PIR:A33644 RefSeq:NP_588209.1
ProteinModelPortal:P21565 MINT:MINT-4687605 STRING:P21565
PRIDE:P21565 EnsemblFungi:SPCC188.06c.1 GeneID:2539290
KEGG:spo:SPCC188.06c OrthoDB:EOG4TMV9N NextBio:20800457
Uniprot:P21565
Length = 522
Score = 295 (108.9 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 67/175 (38%), Positives = 109/175 (62%)
Query: 24 MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
+GD+EGL++ V L D + +++ ++ G+FT+RD +Q NIMK+GP S++ MIPG S
Sbjct: 297 LGDLEGLMEHVQSLDFD-KKNMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMS 355
Query: 84 QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
+ ++ +++E R+KR++ I+DSM + ELD+ DG LF +Q R+ RVA+G+G + E
Sbjct: 356 -NMMNGMNDEEGSLRMKRMLYIVDSMTEQELDS-DGL-LFVEQPSRVLRVARGSGTSVLE 412
Query: 144 VKDLISQYTKFAAVVKKMGGIKGLFK--GGD----ITKNVNQTQMMKLNQQMAKM 192
V++ ISQ FA + KK+GG G+ GG+ + K+ Q M+ Q M
Sbjct: 413 VEETISQVRVFAQMAKKIGGKDGILGKLGGNPAAALKKDPRQLAAMQKRMQAMGM 467
>CGD|CAL0003314 [details] [associations]
symbol:SRP54 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
CGD:CAL0003314 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AACQ01000049 EMBL:AACQ01000048 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0048500 RefSeq:XP_717868.1
RefSeq:XP_717934.1 ProteinModelPortal:Q5A885 STRING:Q5A885
GeneID:3640377 GeneID:3640507 KEGG:cal:CaO19.10753
KEGG:cal:CaO19.3243 Uniprot:Q5A885
Length = 556
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 66/180 (36%), Positives = 102/180 (56%)
Query: 24 MGDIEGLIDKVNELKLDDNE---ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
+GDI+GLI+ V L L +E + IE IK G+FTLRD Q N +KMGP + I MIP
Sbjct: 314 IGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQNQMNNFLKMGPLTNIASMIP 373
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G S + +S+ ++E+ ++K ++ IMDSM EL++ DG ++F K+ RI RVA+G+G
Sbjct: 374 GLS-NIMSQVGDEETSKKIKNMIYIMDSMTIKELES-DG-RIFIKEPSRIVRVARGSGCA 430
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQMAKMMDPRVLHQ 200
EV+ ++ Q+ + + K +G G N QM ++ QQ +P + Q
Sbjct: 431 VVEVEMILQQHRMMSTMAKSAMAAQGGQPGQPGNPMANNPQMQRMMQQAQS--NPNFMQQ 488
>DICTYBASE|DDB_G0275455 [details] [associations]
symbol:srp54 "signal recognition particle 54 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 dictyBase:DDB_G0275455 GO:GO:0005525 GO:GO:0045335
GO:GO:0003924 GO:GO:0006184 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 OMA:GQQVVKI RefSeq:XP_643640.1
HSSP:P61011 ProteinModelPortal:Q75K18 STRING:Q75K18
EnsemblProtists:DDB0232373 GeneID:8620227 KEGG:ddi:DDB_G0275455
Uniprot:Q75K18
Length = 542
Score = 243 (90.6 bits), Expect = 8.3e-20, P = 8.3e-20
Identities = 62/174 (35%), Positives = 101/174 (58%)
Query: 25 GDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQ 84
GD++G+++K+ E+ +D+ L E I G+FTLR M +QFQ IM++GP +++ MIPG +Q
Sbjct: 298 GDMKGMLEKIKEVIPEDSTSLKE-IAQGKFTLRSMQQQFQQIMQLGPIDKLVQMIPGMNQ 356
Query: 85 DFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEV 144
L + E +LK + I+DS+++ ELD G K +++ RI +AQG+G EV
Sbjct: 357 --LPQLQGNEGGLKLKAYINILDSLSEKELD---GKKPITQK--RIITIAQGSGRHPNEV 409
Query: 145 KDLISQYTKFAAVVKKMG---GIKGLFKGGDITKNVNQT-QMMKLNQQMAKMMD 194
+L+ Q+ F ++ K G G+ L G KN+ Q + M N M +M+
Sbjct: 410 VELLEQHKTFEKLIGKGGPGGGLGSLMAGKGGPKNMEQAMKQMNANGGMQGLMN 463
>SGD|S000006292 [details] [associations]
symbol:SRP54 "Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54)" species:4932 "Saccharomyces
cerevisiae" [GO:0008312 "7S RNA binding" evidence=IEA;IDA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA;IMP] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=IC;ISA] [GO:0005525 "GTP binding"
evidence=IEA;ISA] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005048 "signal sequence binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0045047
"protein targeting to ER" evidence=IPI] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA;IDA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 SGD:S000006292
GO:GO:0005525 GO:GO:0005096 GO:GO:0043547 GO:GO:0003924
GO:GO:0006184 EMBL:BK006949 EMBL:U51033 GO:GO:0005048 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824 OrthoDB:EOG4TMV9N
EMBL:X16908 EMBL:M55517 EMBL:X51614 PIR:S69073 RefSeq:NP_015413.1
ProteinModelPortal:P20424 SMR:P20424 DIP:DIP-2943N IntAct:P20424
MINT:MINT-484768 STRING:P20424 PaxDb:P20424 PeptideAtlas:P20424
EnsemblFungi:YPR088C GeneID:856203 KEGG:sce:YPR088C CYGD:YPR088c
OMA:TAGRHKE NextBio:981405 Genevestigator:P20424 GermOnline:YPR088C
Uniprot:P20424
Length = 541
Score = 225 (84.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 49/137 (35%), Positives = 88/137 (64%)
Query: 24 MGDIEGLIDKVNELK-LDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
+GDIE L +++ + +D + +E I+ G+FTL D +Q Q IMKMGP S I MIPG
Sbjct: 305 IGDIESLFEQLQTVSNKEDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIAQMIPGM 364
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
S + +++ E+E+ ++K+++ ++DSM EL++ DG ++F ++ R+ RVA+G+G +
Sbjct: 365 S-NMMNQVGEEETSQKMKKMVYVLDSMTKEELES-DG-RMFIEEPTRMVRVAKGSGTSVF 421
Query: 143 EVKDLISQYTKFAAVVK 159
EV+ ++ Q A + +
Sbjct: 422 EVEMILMQQQMMARMAQ 438
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 182 MMKLNQQMAKMMDPRVLHQMGE 203
M +N+ M M DP+ + QM +
Sbjct: 516 MPDMNEMMKMMQDPQ-MQQMAK 536
>TIGR_CMR|GSU_0642 [details] [associations]
symbol:GSU_0642 "signal recognition particle protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867
RefSeq:NP_951699.1 ProteinModelPortal:Q74FG7 GeneID:2685362
KEGG:gsu:GSU0642 PATRIC:22024031 BioCyc:GSUL243231:GH27-644-MONOMER
Uniprot:Q74FG7
Length = 452
Score = 197 (74.4 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 53/150 (35%), Positives = 76/150 (50%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGDI L++K + E L +K+K QF L D Q Q I KMG I+GMIPG
Sbjct: 297 MGDILTLVEKAQATFDSQEAERLQQKLKKSQFDLEDFRNQLQQIKKMGSIESILGMIPGV 356
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
+ Q S LKR+ I+ SM E N A + R R+A+G+G T +
Sbjct: 357 GKAMKQLQGAQPSERELKRIEAIIGSMTPAERANH--AII---NGSRRLRIAKGSGTTVQ 411
Query: 143 EVKDLISQYTKFAAVVKKMG--GIKGLFKG 170
EV L+ ++T+ ++K++ G KGL +G
Sbjct: 412 EVNQLLKRFTEAQKMMKQLQKLGPKGLMRG 441
>TIGR_CMR|CHY_1434 [details] [associations]
symbol:CHY_1434 "signal recognition particle protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005048 "signal
sequence binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI RefSeq:YP_360266.1
ProteinModelPortal:Q3AC68 SMR:Q3AC68 STRING:Q3AC68 GeneID:3728502
KEGG:chy:CHY_1434 PATRIC:21275999
BioCyc:CHYD246194:GJCN-1433-MONOMER Uniprot:Q3AC68
Length = 446
Score = 188 (71.2 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 53/154 (34%), Positives = 82/154 (53%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGD+ LI+K E L + +++ EK+K +F L D + Q I KMGP Q++GMIPG
Sbjct: 296 MGDVLTLIEKAKEALDAEKAQKMQEKLKSREFDLEDFLDSMQQIKKMGPLEQLLGMIPGM 355
Query: 83 SQ--DFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
+ D E+E LK + I+ SM E R ++ R R+A+G+G +
Sbjct: 356 GKVKDIAGMVDEKE----LKHIEAIIYSMTPEE---RRKPEIIDGS--RKKRIAKGSGTS 406
Query: 141 EKEVKDLISQYTKFAAVVKKMGGI-KGLFKGGDI 173
+EV L+ Q+ + ++K+ GG+ K L KG I
Sbjct: 407 IQEVNRLLKQFEQMKKLMKQFGGMEKQLKKGKKI 440
>TIGR_CMR|SPO_3246 [details] [associations]
symbol:SPO_3246 "signal recognition particle protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_168449.1
ProteinModelPortal:Q5LNF9 GeneID:3195205 KEGG:sil:SPO3246
PATRIC:23379937 Uniprot:Q5LNF9
Length = 510
Score = 182 (69.1 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 54/183 (29%), Positives = 95/183 (51%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGDI L++K E ++++ E +++++ GQF + D+ Q + +++MG +MGM+PG
Sbjct: 298 MGDIVALVEKAQETIEMEQAERMMKRMAKGQFNMNDLKMQLEQMIQMGGMQGMMGMLPGM 357
Query: 83 SQDFLSKGSEQESMAR--LKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
+ ++K + + LK+ + ++ SM E N A L Q R R+A G+G+
Sbjct: 358 GK--MAKQMDAAGLDDRVLKQQIALIQSMTKKERANP--ALL---QASRKKRIAAGSGME 410
Query: 141 EKEVKDLISQYTKFAAVVKKMG--GIKGLFKG---GDITKNVNQTQMMKLNQQMAKMMDP 195
++ L+ + + A ++KKMG G G+ K G K M +MAK MDP
Sbjct: 411 VSDLNKLLKMHRQMADMMKKMGKMGKGGMLKQAMKGMFGKGGTPADMA----EMAKGMDP 466
Query: 196 RVL 198
+ L
Sbjct: 467 KAL 469
>TAIR|locus:2150620 [details] [associations]
symbol:CPSRP54 "chloroplast signal recognition particle
54 kDa subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005048 "signal sequence binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006617 "SRP-dependent cotranslational protein targeting to
membrane, signal sequence recognition" evidence=ISS] [GO:0008312
"7S RNA binding" evidence=IEA;ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0045038 "protein import into chloroplast
thylakoid membrane" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080085 "signal recognition particle, chloroplast targeting"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0003924
GO:GO:0006184 EMBL:AL162873 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 PDB:2HUG PDB:3UI2 PDBsum:2HUG
PDBsum:3UI2 TCDB:3.A.5.1.2 GO:GO:0080085 eggNOG:COG0541 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 EMBL:Z21970 EMBL:AF092168
EMBL:AY050999 EMBL:BT000976 IPI:IPI00538977 PIR:S36637
RefSeq:NP_196014.1 UniGene:At.435 ProteinModelPortal:P37107
SMR:P37107 DIP:DIP-752N IntAct:P37107 MINT:MINT-126488
STRING:P37107 PaxDb:P37107 PRIDE:P37107 ProMEX:P37107
EnsemblPlants:AT5G03940.1 GeneID:830273 KEGG:ath:AT5G03940
GeneFarm:1888 TAIR:At5g03940 HOGENOM:HOG000036164 InParanoid:P37107
OMA:DSGKTEQ PhylomeDB:P37107 ProtClustDB:CLSN2686225
EvolutionaryTrace:P37107 Genevestigator:P37107 GermOnline:AT5G03940
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 Uniprot:P37107
Length = 564
Score = 175 (66.7 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 45/166 (27%), Positives = 86/166 (51%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGD+ ++K E ++ +D E+L +KI +F D +Q + + KMG ++++GMIPG
Sbjct: 372 MGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGM 431
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
+ +S +E+ L + +++ M E R+ +L ++ R R+A+ +G TE+
Sbjct: 432 GK--VSPAQIREAEKNLLVMEAMIEVMTPEE---RERPELLAESPERRKRIAKDSGKTEQ 486
Query: 143 EVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLNQQ 188
+V L++Q + KM + G+ +GG I +K Q+
Sbjct: 487 QVSALVAQIFQMRV---KMKNLMGVMEGGSIPALSGLEDALKAEQK 529
>NCBI_NP|NP_355632.2 [details] [associations]
symbol:ffh "signal recognition particle protein"
species:176299 "Agrobacterium fabrum str. C58" [GO:0009306 "protein
secretion" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_355632
Length = 523
Score = 173 (66.0 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 49/151 (32%), Positives = 76/151 (50%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGDI L++K E + + + EK+ G+F L D+ +Q + KMG IMG++PG
Sbjct: 297 MGDIVSLVEKAAENIDAEKARSMAEKMAKGKFDLNDLADQLGQMKKMGGMGGIMGLMPGM 356
Query: 83 S--QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
+ +D ++ + M R + I+ SM E N D K K+ R+A G+G
Sbjct: 357 AGMKDKMASAGMNDKM--FDRQIAIISSMTKAERANPDILKHSRKK-----RIAAGSGTD 409
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKGLFKGG 171
E+ L+ + A ++K MGG KG KGG
Sbjct: 410 AAEINKLLKMHRGMADMMKAMGG-KG--KGG 437
>TIGR_CMR|CJE_0809 [details] [associations]
symbol:CJE_0809 "signal recognition particle protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
OMA:DSGKTEQ PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_178813.1
ProteinModelPortal:Q5HV72 STRING:Q5HV72 GeneID:3230759
KEGG:cjr:CJE0809 PATRIC:20043363 BioCyc:CJEJ195099:GJC0-824-MONOMER
Uniprot:Q5HV72
Length = 445
Score = 170 (64.9 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 43/146 (29%), Positives = 76/146 (52%)
Query: 25 GDIEGLIDKVNELKLDDNE--ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
GD+ L +K + +D+ E +L +KIK G+F D Q ++I K+G ++GMIPG
Sbjct: 292 GDLATLAEKTAAV-IDEKEAKKLNQKIKKGEFNFNDFLNQMESIKKLGSMKSLIGMIPGL 350
Query: 83 S-QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTE 141
K + ++ + + ++ SM E +N D L + R R+A+GAG+++
Sbjct: 351 GGMANAVKDIDLDNSKEIIHIKAMISSMTPKERENPD---LLNNARKR--RIAEGAGLSQ 405
Query: 142 KEVKDLISQYTKFAAVVKKMGGIKGL 167
EV + Q++ A + K+ G KG+
Sbjct: 406 VEVNRFLKQFSNAAKLAKRFSGKKGM 431
>UNIPROTKB|P66844 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003924
GO:GO:0006184 EMBL:BX842581 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 TCDB:3.A.5.2.2 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 PIR:D70747 RefSeq:NP_217432.1
RefSeq:NP_337496.1 RefSeq:YP_006516369.1 ProteinModelPortal:P66844
SMR:P66844 PRIDE:P66844 EnsemblBacteria:EBMYCT00000003158
EnsemblBacteria:EBMYCT00000069261 GeneID:13317709 GeneID:888242
GeneID:925291 KEGG:mtc:MT2984 KEGG:mtu:Rv2916c KEGG:mtv:RVBD_2916c
PATRIC:18128328 TubercuList:Rv2916c Uniprot:P66844
Length = 525
Score = 167 (63.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 46/147 (31%), Positives = 75/147 (51%)
Query: 24 MGDIEGLIDKVNEL-KLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGD+ LI++ ++ EE KI G+ TL D EQ + KMGP ++GM+PG
Sbjct: 303 MGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGA 362
Query: 83 SQ--DFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
+Q D L++ +++ L R+ I+ M E R K+ + R R+A G+GVT
Sbjct: 363 AQMKDALAEVDDKQ----LDRVQAIIRGMTPQE---RADPKIIN--ASRRLRIANGSGVT 413
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKGL 167
EV L+ ++ + ++ M G G+
Sbjct: 414 VSEVNQLVERFFEARKMMSSMLGGMGI 440
>TIGR_CMR|BA_3983 [details] [associations]
symbol:BA_3983 "signal recognition particle protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 RefSeq:NP_846225.1 RefSeq:YP_020622.1
RefSeq:YP_029947.1 HSSP:O07347 ProteinModelPortal:Q81WJ2 SMR:Q81WJ2
EnsemblBacteria:EBBACT00000009811 EnsemblBacteria:EBBACT00000016655
EnsemblBacteria:EBBACT00000023730 GeneID:1087538 GeneID:2820002
GeneID:2848277 KEGG:ban:BA_3983 KEGG:bar:GBAA_3983 KEGG:bat:BAS3696
BioCyc:BANT260799:GJAJ-3754-MONOMER
BioCyc:BANT261594:GJ7F-3871-MONOMER Uniprot:Q81WJ2
Length = 449
Score = 162 (62.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 45/150 (30%), Positives = 83/150 (55%)
Query: 24 MGDIEGLIDKVNELKLDDNE--ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
MGD+ LI+K + +D+ + EL +K++ FTL D EQ + ++GP +++GM+PG
Sbjct: 298 MGDVLTLIEKA-QATVDEEKAKELEQKMRTLSFTLDDFLEQLGQVRQLGPLDELLGMLPG 356
Query: 82 FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTE 141
++ K ++ + ++ + I+ SM E R+ ++ + R R+A+G+G T
Sbjct: 357 ANKIKGLKNAQVDEK-QIGHIEAIIRSMTKLE---REQPEIIN--ASRKKRIAKGSGTTV 410
Query: 142 KEVKDLISQYTKFAAVVKKMGGI-KGLFKG 170
+E+ LI Q+ ++K M G+ KG KG
Sbjct: 411 QEINRLIKQFDDMKKMMKTMTGMQKGKKKG 440
>TIGR_CMR|APH_0349 [details] [associations]
symbol:APH_0349 "signal recognition particle protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_504956.1 ProteinModelPortal:Q2GKZ5 STRING:Q2GKZ5
GeneID:3930944 KEGG:aph:APH_0349 PATRIC:20949288
BioCyc:APHA212042:GHPM-378-MONOMER Uniprot:Q2GKZ5
Length = 449
Score = 159 (61.0 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 44/143 (30%), Positives = 71/143 (49%)
Query: 24 MGDIEGLIDK-VNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGD+ L++K V + D EL K K G+F L D+ Q + + KMG + IM IP F
Sbjct: 296 MGDVASLVEKAVEAVGKDTINELQAKAKKGKFDLDDLVIQLKALNKMGGIANIMKFIPAF 355
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
D K + +++ + I++SM E R ++ + R R+A+GAGV
Sbjct: 356 GNDIKRKVAGIADDSKVDMYIAIINSMTKQE---RANPEILNG--ARKARIAKGAGVKVD 410
Query: 143 EVKDLISQYTKFAAVVKKMGGIK 165
V L+ QY + +++ K +K
Sbjct: 411 AVNALLKQYNQMNSMISKFSQMK 433
>TIGR_CMR|CPS_4073 [details] [associations]
symbol:CPS_4073 "signal recognition particle protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISS] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_270728.1
ProteinModelPortal:Q47WU4 SMR:Q47WU4 STRING:Q47WU4 GeneID:3519232
KEGG:cps:CPS_4073 PATRIC:21471017
BioCyc:CPSY167879:GI48-4086-MONOMER Uniprot:Q47WU4
Length = 463
Score = 158 (60.7 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 45/149 (30%), Positives = 78/149 (52%)
Query: 24 MGDIEGLIDKVNELKLDDN--EELIEKIKHGQ-FTLRDMYEQFQNIMKMGPFSQIMGMIP 80
MGD+ L++++ E K+D E+L K+K G+ F+L D +Q + MG + +M +P
Sbjct: 297 MGDVLSLVEEI-EQKVDRKQAEKLANKVKSGKGFSLEDFRDQLVQMKSMGGMTGMMDKLP 355
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G + K +Q ++ I++SM GE + D K K+ R+A G+G
Sbjct: 356 GMG-NMSGKIKDQMDDKITVQMEAIINSMTPGERERPDIIKGSRKR-----RIAVGSGTQ 409
Query: 141 EKEVKDLISQYTKFAAVVKKMGGIKGLFK 169
++V L+ Q+T+ ++KKM G G+ K
Sbjct: 410 IQDVNKLLKQFTQMQKMMKKMSGKGGMKK 438
>UNIPROTKB|O07347 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2J7P
PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW PDBsum:2J7P
PDBsum:2XKV PDB:1RY1 PDBsum:1RY1 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
EMBL:U82109 PDB:1FFH PDB:1JPJ PDB:1JPN PDB:1LS1 PDB:1NG1 PDB:1O87
PDB:2C03 PDB:2C04 PDB:2FFH PDB:2IY3 PDB:2J45 PDB:2J46 PDB:2NG1
PDB:3NG1 PDBsum:1FFH PDBsum:1JPJ PDBsum:1JPN PDBsum:1LS1
PDBsum:1NG1 PDBsum:1O87 PDBsum:2C03 PDBsum:2C04 PDBsum:2FFH
PDBsum:2IY3 PDBsum:2J45 PDBsum:2J46 PDBsum:2NG1 PDBsum:3NG1
ProteinModelPortal:O07347 SMR:O07347 IntAct:O07347
EvolutionaryTrace:O07347 Uniprot:O07347
Length = 430
Score = 157 (60.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 48/151 (31%), Positives = 81/151 (53%)
Query: 24 MGDIEGLIDKVNELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
MGD+ L +KV L+ E + K + +L D +Q QN+ ++GPFS+I+G++PG
Sbjct: 294 MGDVASLAEKVRAAGLE--AEAPKSAK--ELSLEDFLKQMQNLKRLGPFSEILGLLPGVP 349
Query: 84 QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
Q G + + A +KRL I+ SM E R ++ + R R+A+G+G + +E
Sbjct: 350 Q-----GLKVDEKA-IKRLEAIVLSMTPEE---RKDPRILNGS--RRKRIAKGSGTSVQE 398
Query: 144 VKDLISQYTKFAAVVK----KMG-GIKGLFK 169
V I + + A++K K G G+ G+F+
Sbjct: 399 VNRFIKAFEEMKALMKSLEKKKGRGLMGMFR 429
>TIGR_CMR|ECH_0475 [details] [associations]
symbol:ECH_0475 "signal recognition particle protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005048 "signal sequence
binding" evidence=ISS] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_507291.1 ProteinModelPortal:Q2GGZ2 STRING:Q2GGZ2
GeneID:3927281 KEGG:ech:ECH_0475 PATRIC:20576422
BioCyc:ECHA205920:GJNR-477-MONOMER Uniprot:Q2GGZ2
Length = 448
Score = 155 (59.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 38/142 (26%), Positives = 77/142 (54%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGF 82
MGD+ L++K E + +E+ +K + G+F L D+ +Q + + K+G + I+ +P F
Sbjct: 295 MGDVVSLVEKATEAVGKHAIDEMQKKAQKGKFDLNDLVQQLKALNKLGGIANILKFMPNF 354
Query: 83 SQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEK 142
D + S + +R+K+ + I++SM E R+ K+ + R R+A+G+GV
Sbjct: 355 GADVKRQVSGIANDSRVKQYIAIVNSMTKKE---RENPKILNG--ARKARIAKGSGVHVN 409
Query: 143 EVKDLISQYTKFAAVVKKMGGI 164
+ LI Q+ + ++++ K +
Sbjct: 410 VINMLIKQFNQMSSLMNKFSKV 431
>UNIPROTKB|P0AGD7 [details] [associations]
symbol:ffh species:83333 "Escherichia coli K-12"
[GO:0048500 "signal recognition particle" evidence=IEA;IMP]
[GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA] [GO:0006612
"protein targeting to membrane" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003924 "GTPase
activity" evidence=IEA;ISS;IMP;IDA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0006184 "GTP catabolic process" evidence=IEA;IMP]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006612 GO:GO:0003924 GO:GO:0008312 PDB:2XXA PDBsum:2XXA
TCDB:3.A.5.1.1 GO:GO:0006614 SUPFAM:SSF47364 PDB:2XKV PDBsum:2XKV
EMBL:X01818 PDB:2J28 PDBsum:2J28 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI PIR:E65039
RefSeq:NP_417101.1 RefSeq:YP_490833.1 PDB:1DUL PDB:1HQ1 PDB:2PXB
PDB:2PXD PDB:2PXE PDB:2PXF PDB:2PXK PDB:2PXL PDB:2PXP PDB:2PXQ
PDB:2PXT PDB:2PXU PDB:2PXV PDB:3LQX PDBsum:1DUL PDBsum:1HQ1
PDBsum:2PXB PDBsum:2PXD PDBsum:2PXE PDBsum:2PXF PDBsum:2PXK
PDBsum:2PXL PDBsum:2PXP PDBsum:2PXQ PDBsum:2PXT PDBsum:2PXU
PDBsum:2PXV PDBsum:3LQX ProteinModelPortal:P0AGD7 SMR:P0AGD7
DIP:DIP-31865N IntAct:P0AGD7 MINT:MINT-1218614 PRIDE:P0AGD7
EnsemblBacteria:EBESCT00000004690 EnsemblBacteria:EBESCT00000014850
GeneID:12933092 GeneID:947102 KEGG:ecj:Y75_p2558 KEGG:eco:b2610
PATRIC:32120619 EchoBASE:EB0296 EcoGene:EG10300
ProtClustDB:PRK10867 BioCyc:EcoCyc:EG10300-MONOMER
BioCyc:ECOL316407:JW5414-MONOMER EvolutionaryTrace:P0AGD7
Genevestigator:P0AGD7 GO:GO:0048500 Uniprot:P0AGD7
Length = 453
Score = 149 (57.5 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 24 MGDIEGLIDKVNELKLD--DNEELIEKIKHGQ-FTLRDMYEQFQNIMKMGPFSQIMGMIP 80
MGD+ LI+ + E K+D E+L K+K G F L D EQ + + MG + +MG +P
Sbjct: 297 MGDVLSLIEDI-ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLP 355
Query: 81 GFSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
G Q + S+ + L R+ I++SM ++ AK + R R+A G G+
Sbjct: 356 GMGQIPDNVKSQMDDKV-LVRMEAIINSMT-----MKERAKPEIIKGSRKRRIAAGCGMQ 409
Query: 141 EKEVKDLISQYTKFAAVVKKM--GGIKGLFK 169
++V L+ Q+ ++KKM GG+ + +
Sbjct: 410 VQDVNRLLKQFDDMQRMMKKMKKGGMAKMMR 440
>TIGR_CMR|SO_1356 [details] [associations]
symbol:SO_1356 "signal recognition particle protein Ffh"
species:211586 "Shewanella oneidensis MR-1" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR001251
PROSITE:PS50191 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347 RefSeq:NP_716976.1
ProteinModelPortal:Q8EH73 GeneID:1169177 KEGG:son:SO_1356
PATRIC:23522366 Uniprot:Q8EH73
Length = 457
Score = 148 (57.2 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 49/156 (31%), Positives = 81/156 (51%)
Query: 24 MGDIEGLIDKVNELKLDDNE--ELIEKIKHG-QFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
MGD+ LI++V E +D + +L K+K G F L D EQ Q + MG ++ +P
Sbjct: 297 MGDVLSLIEEV-ERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLP 355
Query: 81 GFSQ---DFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGA 137
G Q D L++ + M R ++ I++SM E N D K K+ R+A G+
Sbjct: 356 GVGQLPPDALAQ-IQDGKMTR--QMEAIINSMTAKERKNPDLIKGSRKR-----RIAAGS 407
Query: 138 GVTEKEVKDLISQYTKFAAVVKKM---GGIKGLFKG 170
G ++V L+ Q+T+ ++KKM GG++ + +G
Sbjct: 408 GTEIQDVNRLLKQFTQMQKMMKKMSAKGGMQKMMRG 443
>TIGR_CMR|VC_0560 [details] [associations]
symbol:VC_0560 "signal recognition particle protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 PIR:H82306 RefSeq:NP_230211.1
HSSP:P07019 ProteinModelPortal:Q9KUG1 SMR:Q9KUG1 DNASU:2615237
GeneID:2615237 KEGG:vch:VC0560 PATRIC:20080238 Uniprot:Q9KUG1
Length = 461
Score = 147 (56.8 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 24 MGDIEGLIDKVNE-LKLDDNEELIEKIKHGQ-FTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
MGD+ LI+ + + + E+L +K K + F L D EQ + MG ++ +PG
Sbjct: 297 MGDVLSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPG 356
Query: 82 FSQDFLSKGSEQESMARL-KRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVT 140
SQ L + + R+ K++ I++SM E N D K K+ R+A G+G
Sbjct: 357 MSQ--LPADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKGSRKK-----RIAAGSGTQ 409
Query: 141 EKEVKDLISQYTKFAAVVKKM--GGIKGLFK 169
++V L+ Q+T+ ++KKM GG+KG+ +
Sbjct: 410 VQDVNRLLKQFTQMQKMMKKMQQGGMKGMMR 440
>UNIPROTKB|Q97QD2 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
PIR:F95149 RefSeq:NP_345751.1 ProteinModelPortal:Q97QD2
EnsemblBacteria:EBSTRT00000025249 GeneID:931801 KEGG:spn:SP_1287
PATRIC:19706973 Uniprot:Q97QD2
Length = 523
Score = 141 (54.7 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 51/187 (27%), Positives = 89/187 (47%)
Query: 24 MGDIEGLIDKVNELKLDDNE--ELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
MGD+ LI+K ++ + D+ + E+ EK++ F D +Q + MGP ++ MIPG
Sbjct: 298 MGDMLTLIEKASQ-EYDEQKALEMAEKMRENTFDFNDFIDQLDQVQNMGPMEDLLKMIPG 356
Query: 82 FSQDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTE 141
+ + + + + ++ R I+ SM E +N D L + R R+A G+G T
Sbjct: 357 MANNPALQNMKVDER-QIARKRAIVSSMTPEERENPD---LLNPSRRR--RIAAGSGNTF 410
Query: 142 KEVKDLISQYTKFAAVVKKMGGIKGLFKGGDITKNVNQTQMMKLN--QQMAKM--MDPRV 197
EV I + + K++ ++G+ G D+ K + Q + N + M M MD
Sbjct: 411 VEVNKFIKDFNQ----AKQL--MQGVMSG-DMNKMMKQMGINPNNLPKNMPNMGGMDMSA 463
Query: 198 LH-QMGE 203
L MG+
Sbjct: 464 LEGMMGQ 470
>TIGR_CMR|CBU_0450 [details] [associations]
symbol:CBU_0450 "signal recognition particle protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
RefSeq:NP_819486.1 ProteinModelPortal:Q83E79 PRIDE:Q83E79
GeneID:1208334 KEGG:cbu:CBU_0450 PATRIC:17929591
BioCyc:CBUR227377:GJ7S-448-MONOMER Uniprot:Q83E79
Length = 461
Score = 136 (52.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/146 (28%), Positives = 74/146 (50%)
Query: 24 MGDIEGLIDKVNELKLDDNE--ELIEKIKHG-QFTLRDMYEQFQNIMKMGPFSQIMGMIP 80
MGDI L+++ K+D + ++ +K++ G +F D Q Q + KMG ++G +P
Sbjct: 297 MGDIVSLVEEAQR-KVDQKQAAKIAKKLQKGNRFDFDDFLAQLQQMKKMGGMQSLLGKLP 355
Query: 81 GFSQDFLSKGSEQESMARLK-RLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGV 139
G Q L KG+ +L ++ I+ SM L R L + R R+++G+G
Sbjct: 356 GMGQ--LPKGASAFLDDKLLVKMQAIIQSMT---LKERRFPALINGSRKR--RISKGSGT 408
Query: 140 TEKEVKDLISQYTKFAAVVKKMGGIK 165
++V L+ Q+ + ++K+M G K
Sbjct: 409 GLQDVNKLLKQFVQMQKMMKRMKGDK 434
>TIGR_CMR|NSE_0540 [details] [associations]
symbol:NSE_0540 "signal recognition particle protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0048501 "signal recognition
particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_506423.1
ProteinModelPortal:Q2GDM3 STRING:Q2GDM3 GeneID:3931977
KEGG:nse:NSE_0540 PATRIC:22681129
BioCyc:NSEN222891:GHFU-559-MONOMER Uniprot:Q2GDM3
Length = 449
Score = 114 (45.2 bits), Expect = 0.00026, P = 0.00026
Identities = 38/141 (26%), Positives = 71/141 (50%)
Query: 25 GDIEGLIDKVN-ELKLDDNEELIEKIKHGQFTLRDMYEQFQNIMKMGPFSQIMGMIPGFS 83
GDI L++ + E+ + + ++I+ G+F D+ Q ++I K+G ++++ IPG +
Sbjct: 300 GDIASLVEYASSEVGEERIGSIRKRIEAGKFDYDDLVLQLKSIDKLGGIAKLLRFIPGIN 359
Query: 84 QDFLSKGSEQESMARLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKE 143
+ + + LK+ + ++ SM R+ A L S R +R+A GAGV E
Sbjct: 360 KVPTEHLVDDTT---LKKNLAMIGSMT-----KRERACLDSINQSRKSRIASGAGVKIYE 411
Query: 144 VKDLISQYTKFAAVVKKMGGI 164
V LI + K + K+G +
Sbjct: 412 VNKLIKNFEKARLLALKIGKV 432
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 203 203 0.00092 111 3 11 22 0.46 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 545 (58 KB)
Total size of DFA: 143 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.95u 0.08s 22.03t Elapsed: 00:00:11
Total cpu time: 21.96u 0.08s 22.04t Elapsed: 00:00:11
Start: Thu Aug 15 12:13:00 2013 End: Thu Aug 15 12:13:11 2013