RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4310
         (203 letters)



>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 97.4 bits (242), Expect = 4e-27
 Identities = 83/107 (77%), Positives = 99/107 (92%)

Query: 53  QFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDG 112
           QFTLRDMYEQFQNIMKMGPFSQI+GMIPGF  DF+SKG+EQESMARLK+LMTIMDSMND 
Sbjct: 1   QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQ 60

Query: 113 ELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVK 159
           ELD+ DGAK+FSKQ GRI RVA+G+GV+ ++V++L++QYTKFA +VK
Sbjct: 61  ELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVK 107


>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 138

 Score = 82.7 bits (204), Expect = 4e-21
 Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 10/142 (7%)

Query: 25  GDIEGLIDKVNEL-KLDDNEELIEKIK--HGQFTLRDMYEQFQNIMKMGPFSQIMGMIPG 81
           GDIE +++KV  L + D  ++ +E +    G+ TLRD+Y Q   + KMGP S+++  IPG
Sbjct: 1   GDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPG 60

Query: 82  FSQDFLSKGSEQESMA--RLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGV 139
                 +   +Q  +   +++R +  ++SM   EL+N +          R+ R+A+G+G+
Sbjct: 61  LGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIID-----KSRMRRIAEGSGL 115

Query: 140 TEKEVKDLISQYTKFAAVVKKM 161
             +EV++L+  Y     ++K +
Sbjct: 116 EVEEVRELLEWYNNMNRLLKMV 137


>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh
           {Escherichia coli [TaxId: 562]}
          Length = 104

 Score = 69.9 bits (171), Expect = 1e-16
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 54  FTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGE 113
           F L D  EQ + +  MG  + +MG +PG  Q        Q     L R+  I++SM   E
Sbjct: 2   FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKE 60

Query: 114 LDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKM 161
                 AK    +  R  R+A G+G+  ++V  L+ Q+     ++KKM
Sbjct: 61  -----RAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 103


>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh
           {Thermus aquaticus [TaxId: 271]}
          Length = 100

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 11/109 (10%)

Query: 54  FTLRDMYEQFQNIMKMGPFSQIMGMIPGFSQDFLSKGSEQESMARLKRLMTIMDSMNDGE 113
            +L D  +Q QN+ ++GPFS+I+G++PG  Q        +     +KRL  I+ SM    
Sbjct: 2   LSLEDFLKQMQNLKRLGPFSEILGLLPGVPQGL------KVDEKAIKRLEAIVLSMTP-- 53

Query: 114 LDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAVVKKMG 162
            + R   ++ +    R  R+A+G+G + +EV   I  + +  A++K + 
Sbjct: 54  -EERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLE 99


>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh
           {Escherichia coli [TaxId: 562]}
          Length = 69

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 98  RLKRLMTIMDSMNDGELDNRDGAKLFSKQTGRITRVAQGAGVTEKEVKDLISQYTKFAAV 157
            L R+  I++SM   E    +  K       R  R+A G+G+  ++V  L+ Q+     +
Sbjct: 11  VLVRMEAIINSMTMKERAKPEIIK-----GSRKRRIAAGSGMQVQDVNRLLKQFDDMQRM 65

Query: 158 VKKM 161
           +KKM
Sbjct: 66  MKKM 69


>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 236

 Score = 25.5 bits (56), Expect = 5.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 81  GFSQDFLSKGSEQESMARLKRL 102
           G+S  FL++G    +M R+  +
Sbjct: 90  GYSSRFLTEGGVPFTMTRVNII 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,519
Number of extensions: 32692
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 28
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)