BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4311
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/162 (83%), Positives = 150/162 (92%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAY+Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/162 (83%), Positives = 150/162 (92%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAY+Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/162 (83%), Positives = 150/162 (92%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAY+Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/162 (83%), Positives = 150/162 (92%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAY+Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/162 (83%), Positives = 150/162 (92%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAY+Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/162 (83%), Positives = 150/162 (92%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAY+Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 289 bits (739), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 135/162 (83%), Positives = 149/162 (91%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAY Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS
Sbjct: 121 LAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 259 bits (663), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 124/162 (76%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKIT+AL TVINEEVL +MLKEIC ALLEADVN+KLV KLR+NVR I
Sbjct: 1 MVLADLGRKITTALLP-RQRTVINEEVLQAMLKEICTALLEADVNVKLVGKLRQNVRAAI 59
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
DF++M +GL+KRR+IQ+SV+ EL KL+DPGV P KG NVIMFVGLQGSGKTTTCTK
Sbjct: 60 DFEDMGAGLSKRRIIQTSVFNELCKLLDPGVPVWHPTKGHSNVIMFVGLQGSGKTTTCTK 119
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LAYHY KK WK CLVCADTFRAGA+DQLKQNATKAR+PFYGS
Sbjct: 120 LAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYGS 161
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 228 bits (582), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/183 (57%), Positives = 144/183 (78%), Gaps = 1/183 (0%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLA LG I+ AL+ +SNAT+I+E+VLN L EI ALL+ADV KLV+ + N+++++
Sbjct: 1 MVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIV 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ +++A+G NKRR+IQ +VY EL K++DPG A +KGKP+V+MFVGLQGSGKTTTCTK
Sbjct: 61 NLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLIPT 180
AYH+ K+ WK LVCADTFRAGA+DQLKQNATKA+IPFYGSS + +P+ + + + T
Sbjct: 121 YAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPV-KIAVDGVET 179
Query: 181 YEK 183
++K
Sbjct: 180 FKK 182
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 134/162 (82%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLA+LG I+ AL+ +SNAT+I+E+VLN L EI ALL+ADV KLV+ + N+++++
Sbjct: 1 MVLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIV 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ D++A+G NKRR+IQ +V+ EL K++DPG + P+KGKP+++MFVGLQGSGKTTTCTK
Sbjct: 61 NLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
AY++ KK WK LVCADTFRAGA+DQLKQNATKA+IPFYGS
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 216 bits (550), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 136/162 (83%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLA+LG +IT A++ ++N T+I+E+VLN L EI ALL++DV+ LV+K++ N+++++
Sbjct: 1 MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIV 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ D++A+G NKR +I+ +++KEL +++DPG A P+K KP+V+MFVGLQG+GKTTTCTK
Sbjct: 61 NLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
AY++ KK +KA LVCADTFRAGA+DQLKQNATKA+IPFYGS
Sbjct: 121 YAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGS 162
>sp|P21565|SRP54_SCHPO Signal recognition particle 54 kDa protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp54 PE=1 SV=1
Length = 522
Score = 216 bits (550), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 129/162 (79%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MV ADLGR++ SAL S AT +NEE+++++LK IC ALLE DVN++LV++LR N+++ I
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ + G+N +R++Q +V+ EL LVDP V A P+KG+P+VIM VGLQGSGKTTTC+K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
LA HY ++ K+CLV ADTFRAGA+DQLKQNA KAR+P++GS
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGS 162
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 216 bits (549), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 130/162 (80%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLA LG I+ AL +SNATVI+E+VL L EI ALL++DV K+V+ ++ N+R+++
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ + +A+G NKRR+IQ +V+ EL ++DPG A P+KGKP+V+MFVGLQGSGKTTTCTK
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTPKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
AY++ +K +K LVCADTFRAGA+DQLKQNATKA+IPFYGS
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGS 162
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/162 (59%), Positives = 129/162 (79%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLA LG I+ AL +SNATVI+E+VL L EI ALL++DV K+V+ ++ N+R+++
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ + +A+G NKRR+IQ +V+ EL ++DPG A +KGKP+V+MFVGLQGSGKTTTCTK
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTTKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
AY++ +K +K LVCADTFRAGA+DQLKQNATKA+IPFYGS
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGS 162
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 133/162 (82%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLA+LG +IT A++ +SN T+I+E+ LN L EI ALL++DV+ LVK+++ N+++++
Sbjct: 1 MVLAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIV 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ +++A+G NKRR+I+ +++ EL K++DPG A P+K K +V+MFVGLQG+GKTTTCTK
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
AY++ KK +K LVCADTFRAGA+DQLKQNATKA+IPFYGS
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162
>sp|Q00179|SRP54_ASPNG Signal recognition particle 54 kDa protein homolog OS=Aspergillus
niger GN=srpA PE=3 SV=1
Length = 534
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 129/163 (79%), Gaps = 1/163 (0%)
Query: 1 MVLADLGRKITSALRSLSNATVINE-EVLNSMLKEICAALLEADVNIKLVKKLRENVRQV 59
MVL DLGR+I +A+ L+ + ++E + + M+KEICAALL ADVN++LV+ LR++++
Sbjct: 1 MVLQDLGRRINAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSS 60
Query: 60 IDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCT 119
++F + +NK+R+IQ +V+ EL+ LVDP + +P+KG+ NVIMFVGLQG+GKTTTCT
Sbjct: 61 VNFASLPPAVNKKRLIQKAVFDELVSLVDPHAEPFRPKKGRSNVIMFVGLQGAGKTTTCT 120
Query: 120 KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
KLA HY + +K LVCADTFRAGA+DQLKQNATKA+IP+YGS
Sbjct: 121 KLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGS 163
>sp|Q75K18|SRP54_DICDI Signal recognition particle 54 kDa protein OS=Dictyostelium
discoideum GN=srp54 PE=1 SV=1
Length = 542
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 135/170 (79%), Gaps = 1/170 (0%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLG +++SALRSL+ T++NE+ +N +LKE+ AL ++DV++ L+ ++R+N++ I
Sbjct: 1 MVLADLGNQLSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D+MA+GLNKR++I+ V+ ELI+L+DPGV +P KGK N++MFVGLQG+GKTT+ TK
Sbjct: 61 KLDQMAAGLNKRKIIKQVVFDELIRLLDPGVPLWKPTKGKSNIVMFVGLQGAGKTTSVTK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
LAY Y KK + +VCADTFRAGA+DQ++ NA KA+I +YGS +++P+
Sbjct: 121 LAYFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSET-EKDPV 169
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare
GN=SRP54-3 PE=2 SV=1
Length = 493
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 128/162 (79%), Gaps = 1/162 (0%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLAD+G I+ AL ++S+A V++E VL L EI AL+++DV K V L+ N+R+ +
Sbjct: 1 MVLADVGGSISRAL-AMSSAAVVDESVLRECLNEIARALMQSDVRFKTVCDLQANIRKTV 59
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ + +A+G NKRR+I++SV KEL K++D G A P+KGKPNV+MFVGLQGSGKTTTCTK
Sbjct: 60 NLEALAAGTNKRRIIETSVGKELCKMLDTGKPAFVPKKGKPNVVMFVGLQGSGKTTTCTK 119
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
A+++ +K +K LVCADTFRAGA+DQLKQNATKA+IPFYGS
Sbjct: 120 YAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGS 161
>sp|Q99150|SRP54_YARLI Signal recognition particle 54 kDa protein homolog OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SRP54 PE=3 SV=2
Length = 536
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 125/167 (74%), Gaps = 8/167 (4%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL DLG++I A +LS I+E L++MLKE+C+ALLE+DVNIKLV +LR+ V+ +
Sbjct: 1 MVLEDLGKRINGAFANLSKGGDIDE-ALDAMLKEVCSALLESDVNIKLVSQLRQKVKNSV 59
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKA-----HQPQKGKPNVIMFVGLQGSGKT 115
+G +K+++IQ +++ EL+ LV A +PQKGK NV+MFVGLQGSGKT
Sbjct: 60 K--ATPNGASKKKVIQKALFDELVNLVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKT 117
Query: 116 TTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
T+CTKLA +Y ++ +K LVCADTFRAGA+DQLKQNATKA+IPF+GS
Sbjct: 118 TSCTKLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFFGS 164
>sp|P49966|SR542_ARATH Signal recognition particle 54 kDa protein 2 OS=Arabidopsis
thaliana GN=SRP-54B PE=3 SV=2
Length = 497
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 127/172 (73%), Gaps = 3/172 (1%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLA+LG +I SA++ ++N T+I+E+ LN L EI ALL++DV+ LVK+++ N+++++
Sbjct: 1 MVLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIV 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGS--GKTTTC 118
+ +++A+G NKRR+I+ +++ EL K++DPG A P+K KP+V+MFVGLQG K
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEVLEKPQLV 120
Query: 119 TKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
+ +K +K LVCADTFRAGA+DQLKQNATK++IP+YGS G +P+
Sbjct: 121 PSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGS-DPV 171
>sp|O15821|SRP54_ENTHI Signal recognition particle 54 kDa protein OS=Entamoeba histolytica
PE=3 SV=1
Length = 487
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 124/161 (77%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL+ LG + +ALR ++++TV++EEV+N++LKEI +LL DVN ++++ N+++ I
Sbjct: 1 MVLSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ +++ G++KR++I+ SV++ELI LVDP +A +P+KGK V+M VGLQG+GKTTT TK
Sbjct: 61 NSEDIPDGIDKRKLIKDSVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161
LA +Y + +K +V ADTFRAGAY+QL+ NA +A +PF+G
Sbjct: 121 LALYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFFG 161
>sp|O42816|SRP54_CANAX Signal recognition particle 54 kDa protein homolog OS=Candida
albicans GN=SRP54 PE=2 SV=1
Length = 556
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 124/182 (68%), Gaps = 23/182 (12%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLG ++ AL S+ + + ++ + M+K+IC+ALLE+DVN+KLV KLR N++ I
Sbjct: 1 MVLADLGSRLRGALSSVESGS---DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKI 57
Query: 61 DFDEMA---SGLNKRRMIQSSVYKELIKLVDPGVKAHQPQK---------GK-------- 100
D ++ S +NKR+ +Q ++ EL LVD V+ +P+K GK
Sbjct: 58 DESNVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKES 117
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFY 160
+VIMFVGLQG+GKTT+CTKLA +Y K+ +K LVCADTFRAGA+DQLKQNA KA IP+Y
Sbjct: 118 SHVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYY 177
Query: 161 GS 162
GS
Sbjct: 178 GS 179
>sp|P20424|SRP54_YEAST Signal recognition particle subunit SRP54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP54 PE=1
SV=2
Length = 541
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 118/170 (69%), Gaps = 8/170 (4%)
Query: 1 MVLADLGRKITSALR-SLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQV 59
MVLADLG++I SA+ ++SN ++ MLK I ALLE+DVNI LV KLR N+R
Sbjct: 1 MVLADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQ 60
Query: 60 I----DFDEMASGLNKRRMIQSSVYKELIKLV---DPGVKAHQPQKGKPNVIMFVGLQGS 112
+ ++ + +++IQ +V+ EL KLV KA P+K K N+IMFVGLQGS
Sbjct: 61 LLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGS 120
Query: 113 GKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
GKTT+CTKLA +Y K+ +K LVCADTFRAGA+DQLKQNA +ARIPFYGS
Sbjct: 121 GKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGS 170
>sp|Q12ZG8|SRP54_METBU Signal recognition particle 54 kDa protein OS=Methanococcoides
burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1
Length = 439
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 102/161 (63%), Gaps = 4/161 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MV+ LG + AL+ L A I+E+ + ++K+I ALL+ADVN+KLV ++ ++++
Sbjct: 1 MVMDKLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+E+ G+N R + VY+ELI +V G A P K P IM +GLQGSGKTTT +K
Sbjct: 61 LKEEVPPGMNPREHVIKIVYQELISIV--GRSADIPLK--PQTIMMIGLQGSGKTTTTSK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161
L+ ++ +K K ++CADTFR GAY QLK K +PFYG
Sbjct: 117 LSRYFQRKGLKPAVICADTFRPGAYQQLKTLCDKLNVPFYG 157
>sp|Q8THD0|SRP54_METAC Signal recognition particle 54 kDa protein OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=srp54 PE=3 SV=1
Length = 440
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 109/186 (58%), Gaps = 11/186 (5%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MV+ LG + AL+ L A I+E +N ++K+I ALL+ADVN+KLV + + +++
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+E +G+N R + VY+EL++++ G + KP IM VGLQGSGKTT+ K
Sbjct: 61 MKEEPPAGMNPREHVIRIVYQELMEIIGKGAEIQL----KPQTIMMVGLQGSGKTTSAAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP----IHNMGLS 176
LA ++ +K KA +V ADTFR GAY QLK A K + FYG + NP I GL
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFYGE---EGNPDAVEITKNGLK 173
Query: 177 LIPTYE 182
+ Y+
Sbjct: 174 ALEKYD 179
>sp|Q0W2G1|SRP54_UNCMA Signal recognition particle 54 kDa protein OS=Uncultured
methanogenic archaeon RC-I GN=srp54 PE=3 SV=1
Length = 444
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 4/166 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL +LG + ALR ++N+ I++EV++ ++K+I A+++ADVN+KLV KL ++
Sbjct: 1 MVLDNLGTSLKDALRKIANSGKIDKEVIDEVVKDIQRAMIQADVNVKLVMKLSSTIKNRA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ +G+N + + VY EL+ +V P + IM VGLQGSGKTTT K
Sbjct: 61 LTEAPPAGMNSKEHVLRIVYTELVNIVGKAT----PVALQSQTIMMVGLQGSGKTTTSAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGK 166
+A ++ +K K ++CADT+R GAYDQLKQ K + FYG + K
Sbjct: 117 IARYFARKGLKPAVICADTYRPGAYDQLKQLCDKLGVGFYGEAGNK 162
>sp|A0B638|SRP54_METTP Signal recognition particle 54 kDa protein OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1
Length = 444
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 109/183 (59%), Gaps = 5/183 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL +LG + AL+ +++AT +++ +++ +++I ALL+ADVN+KLV L +R+
Sbjct: 1 MVLDNLGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
++ +G+N R + + VY+ELI L+ G K IM VGLQGSGKTTT K
Sbjct: 61 LNEKPPAGMNPREHVINIVYQELINLIGRGTDIPL----KKQTIMLVGLQGSGKTTTAAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP-IHNMGLSLIP 179
LA ++ ++ + ++CADTFRAGAYDQLK + I FYG + P + GL
Sbjct: 117 LATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATK 176
Query: 180 TYE 182
Y+
Sbjct: 177 KYD 179
>sp|Q46E01|SRP54_METBF Signal recognition particle 54 kDa protein OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1
Length = 443
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 108/186 (58%), Gaps = 11/186 (5%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MV+ LG + AL+ L A I+E +N ++K+I ALL+ADVN+KLV + + +++
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+ +G+N R + VY+EL++++ G + KP +IM VGLQGSGKTT+ K
Sbjct: 61 MKEAPPAGMNPREHVIRIVYQELMEIIGKGAEIQL----KPQIIMMVGLQGSGKTTSTAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP----IHNMGLS 176
LA ++ +K KA +V ADTFR GAY QLK K + FYG + NP I GL
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFYGE---ENNPDAVEITRNGLK 173
Query: 177 LIPTYE 182
+ Y+
Sbjct: 174 ALEKYD 179
>sp|Q8PXF3|SRP54_METMA Signal recognition particle 54 kDa protein OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=srp54 PE=3 SV=1
Length = 443
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MV+ LG + AL+ L A I+E +N ++K+I ALL+ADVN+KLV + + +++
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
++ +G+N R + VY+EL++++ G KP IM VGLQGSGKTT+ K
Sbjct: 61 MKEDPPAGMNPREHVIRIVYQELMEIIGKGADIQL----KPQTIMMVGLQGSGKTTSAAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSS 163
LA ++ +K KA +V ADTFR GAY QLK + K + FYG
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFYGEE 159
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 103/169 (60%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L LG + AL L A ++++++ ++K+I AL++ADVN+KLV K+ + + +
Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
++ GL+K+ I VY+EL+KL+ K + K NVI+ VG+QGSGKTTT KL
Sbjct: 61 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKL 120
Query: 122 AYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
A + K+ K L+ ADT+R AY+QLKQ A K +P YG ++P+
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPV 169
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL LG+ +++AL+ ++ A ++E ++ ++++I AL++ADVN++LV KL + +++
Sbjct: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQ-KGKPNVIMFVGLQGSGKTTTCT 119
++ +G++K+ I VY+EL K + G +A + K KP +++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFL--GTEAKPIEIKEKPTILLMVGVQGSGKTTTVA 118
Query: 120 KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
KLA H+ K+ +K +VC+DT+R GAY QLKQ I +G
Sbjct: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGD 161
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL LGR +++AL+ ++ A ++E ++ ++++I ALL+ADVN++LV KL + +++
Sbjct: 1 MVLDSLGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQ-KGKPNVIMFVGLQGSGKTTTCT 119
++ +G++K+ I VY+EL K + G +A + K KP V++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFL--GTEAKPIEIKEKPTVLLTVGVQGSGKTTTVA 118
Query: 120 KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
KLA ++ K+ +K +VC+DT+R GAY QLKQ I +G
Sbjct: 119 KLARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGD 161
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L LG I +AL + NAT ++++++ ++K+I AL++ADVN+KLV + + + +
Sbjct: 1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAI 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLV-DPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
++ GL+K+ I VY EL+KL+ + G K K K N+I+ VG+QGSGKTT+ K
Sbjct: 61 YESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKNK-NIILLVGIQGSGKTTSAAK 119
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171
LA K+ +K L+ AD +R AY QLKQ + K IP +G + P+
Sbjct: 120 LARTLQKRGFKPALIAADVYRPAAYQQLKQLSEKIHIPLHGDPTKTKTPME 170
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENV-RQVI 60
+L LG+ ++ AL L NAT ++++++ ++K+I AL+++DVN+KLV + + + R+ I
Sbjct: 1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D + GL+K+ I VY EL+KL+ + + K +VI+ +G+QGSGKTT+ K
Sbjct: 61 D-EAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAK 119
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171
LA + KK + L+ AD +R AY QLKQ + K +P +G + P+
Sbjct: 120 LARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVE 170
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 105/167 (62%), Gaps = 3/167 (1%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
M L LG+ + +ALR L+ ++ ++E + ++++I AL++ADVN++LV L + + +
Sbjct: 1 MALEKLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQ-KGKPNVIMFVGLQGSGKTTTCT 119
+E +G++K+ I VY+EL K + G +A + K KP V++ VG+QGSGKTT+
Sbjct: 61 LEEEPPTGVSKKEHIIKIVYEELTKFL--GTEAKPIEIKEKPTVLLTVGIQGSGKTTSIA 118
Query: 120 KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGK 166
KLA ++ K+ +K LVC+DT+R GAY QLKQ I +G + K
Sbjct: 119 KLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGDPEEK 165
>sp|O27376|SRP54_METTH Signal recognition particle 54 kDa protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=srp54 PE=3 SV=1
Length = 442
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L +LGR ++ ++ L+ T+++EEV+ ++K+I AL+++DVNIKLV L +++ +
Sbjct: 1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERAL 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQ-PQKGKPNVIMFVGLQGSGKTTTCTK 120
+E G+ + I S VY E++KL+ G K+H+ KP I+F+GLQGSGKTTT K
Sbjct: 61 NEEPPKGITPKEHIISIVYDEMVKLL--GEKSHELVIDDKPYRILFLGLQGSGKTTTIGK 118
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGK 166
LA + KK + +VC DT+R A +QLKQ + YG + +
Sbjct: 119 LARYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSIYGDPQNR 164
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 113/168 (67%), Gaps = 5/168 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKL-RENVRQV 59
MVL +LG+ + + L+ ++ A+ ++E ++ ++++I AL++ADVN++LV +L RE R+
Sbjct: 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRA 60
Query: 60 IDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQ-KGKPNVIMFVGLQGSGKTTTC 118
++ ++ +G++K+ I VY+EL K + G +A + K KP +++ VG+QGSGKTTT
Sbjct: 61 LE-EKPPAGISKKEHIIKIVYEELTKFL--GTEAKPIEIKEKPTILLMVGIQGSGKTTTV 117
Query: 119 TKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGK 166
KLA ++ K+ +K +VC+DT+R GAY QL+Q + I +G+ + K
Sbjct: 118 AKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEK 165
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 102/170 (60%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L LG+ ++ AL + NAT ++++++ ++K+I AL+++DVN+KLV + + + +
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
+ GL+K+ I VY EL+KL+ ++ + K +VI+ +G+QGSGKTT+ KL
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171
A + KK + L+ AD +R AY QLKQ + K +P +G + P+
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVD 170
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
M L LG+ + SAL+ L+ ++ ++E + ++++I ALL+ADVN+KLV +L + +++
Sbjct: 1 MALEKLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQ-KGKPNVIMFVGLQGSGKTTTCT 119
+E +G++K+ I VY+EL K + G +A + K KP VI+ VG+QGSGKTT+
Sbjct: 61 LEEEPPAGVSKKEHIIKIVYEELTKFL--GTEAKPLEIKHKPTVILTVGIQGSGKTTSVA 118
Query: 120 KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGK 166
KLA + K+ +K +VC+DT+R GAY QL+Q I +G + K
Sbjct: 119 KLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEEK 165
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 100/170 (58%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L LG+ ++ AL + NAT ++++++ ++K+I AL+++DVN+KLV + + + +
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
+ G +K+ I VY EL+KL+ + + K +VI+ VG+QGSGKTT+ KL
Sbjct: 61 EEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDPSKKSVILLVGIQGSGKTTSSAKL 120
Query: 122 AYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171
A + KK K L+ AD +R AY QLKQ + K +P +G + P+
Sbjct: 121 ARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVPLFGDETKTKTPVE 170
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 101/170 (59%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L LG+ ++ AL + NAT ++++++ ++K+I AL+++DVN+KLV + + + +
Sbjct: 1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
+ GL+K+ I VY EL+KL+ + + K +VI+ +G+QGSGKTT+ KL
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171
A + KK + L+ AD +R AY QLKQ + K +P +G + P+
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVD 170
>sp|Q9HMN5|SRP54_HALSA Signal recognition particle 54 kDa protein OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=srp54 PE=3 SV=1
Length = 460
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 5/186 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL DLG + L +L + I+EE ++ ++KEI +LL+ADV++ LV L E++ +
Sbjct: 1 MVLDDLGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERS 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+E G + R + VY+EL+ LV P + IM GLQGSGKTTT K
Sbjct: 61 LEEEPPGGTSARDHVLRIVYEELVGLV----GDSTPIPLEEQTIMLAGLQGSGKTTTAAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLIPT 180
+A+ + KK + +V DTFR GAY+Q + A +A + FYG +P+ L T
Sbjct: 117 MAWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFYGEPDSD-DPVQIARDGLAAT 175
Query: 181 YEKSFH 186
+ H
Sbjct: 176 ADADVH 181
>sp|B0R7X3|SRP54_HALS3 Signal recognition particle 54 kDa protein OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp54
PE=3 SV=1
Length = 460
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 5/186 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL DLG + L +L + I+EE ++ ++KEI +LL+ADV++ LV L E++ +
Sbjct: 1 MVLDDLGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERS 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+E G + R + VY+EL+ LV P + IM GLQGSGKTTT K
Sbjct: 61 LEEEPPGGTSARDHVLRIVYEELVGLV----GDSTPIPLEEQTIMLAGLQGSGKTTTAAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLIPT 180
+A+ + KK + +V DTFR GAY+Q + A +A + FYG +P+ L T
Sbjct: 117 MAWWFSKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFYGEPDSD-DPVQIARDGLAAT 175
Query: 181 YEKSFH 186
+ H
Sbjct: 176 ADADVH 181
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 109/171 (63%), Gaps = 4/171 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
M L LG+ + SALR L+ ++ ++E ++ ++++I AL+++DVN++LV +L + +++
Sbjct: 1 MALEKLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQ-KGKPNVIMFVGLQGSGKTTTCT 119
++ +G++ R + VY+EL KL+ G +A + + KP +++ VG+QGSGKTTT
Sbjct: 61 LNEKPPAGVSPREHVIKIVYEELTKLL--GKEAVPLEIREKPTILLTVGIQGSGKTTTIA 118
Query: 120 KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
KLA H K+ +K LVC DT+R GAY QLKQ I +G G+++ I
Sbjct: 119 KLARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVFGDP-GEKDAI 168
>sp|Q3IUP1|SRP54_NATPD Signal recognition particle 54 kDa protein OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3
SV=1
Length = 466
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 5/186 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL DLG + L L T ++E+ + ++KEI +LL ADV++ LV L +++R+
Sbjct: 1 MVLDDLGSSLRGTLDKLQGKTTLSEDDVEEIVKEIQRSLLSADVDVDLVMDLSDSIRERA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+E +G R + VY+E+++LV G P + I+ GLQGSGKTTT K
Sbjct: 61 LDEEPPAGTTARDHVLKIVYEEMVELV--GESTALPLE--EQTIVLAGLQGSGKTTTAAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLIPT 180
+A+ + KK + ++ DTFR GAYDQ K+ +A + FYG+ +P+ L T
Sbjct: 117 MAWWFSKKGLRPAVIQTDTFRPGAYDQAKEMCERAEVDFYGNPDSD-DPVEIAERGLEET 175
Query: 181 YEKSFH 186
+ H
Sbjct: 176 ADADVH 181
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 100/170 (58%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L LG+ ++ AL + NAT ++++++ ++K+I AL+++DVN+KLV + + + +
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
+ GL+K+ I VY EL+ L+ + + K +VI+ +G+QGSGKTT+ KL
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171
A + KK + L+ AD +R AY QLKQ + K +P +G + P+
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVE 170
>sp|O07853|SRP54_SULAC Signal recognition particle 54 kDa protein OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=srp54 PE=3 SV=2
Length = 444
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Query: 25 EEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELI 84
E+ +N +KE+ L++ADVN++LVK L + +++ I ++ S + KR S VY EL
Sbjct: 19 EKAVNEFIKELQIILIKADVNVRLVKDLTDRIKKRITEEKPPSAIEKREWFISIVYDELS 78
Query: 85 KLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGA 144
+L + K P +IM VG+QGSGKTTT KLA Y KK +K LV AD +R A
Sbjct: 79 RLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFYKKKGYKVGLVAADIYRPAA 138
Query: 145 YDQLKQNATKARIPFYGSSKGKRNPIH 171
Y+QL Q + IP YG G +NPI
Sbjct: 139 YEQLIQIGQQINIPVYGEP-GNKNPIE 164
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 7/168 (4%)
Query: 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61
+L +LG +T ++ L +VI+++ + ++KEI AL+++DVNI LV L + +++
Sbjct: 1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRAL 60
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVD---PGVKAHQPQKGKPNVIMFVGLQGSGKTTTC 118
+E G+ R + + +Y+E++ L+ PG+ KP I+F+GLQGSGKTTT
Sbjct: 61 EEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDIDV----KPYKILFLGLQGSGKTTTI 116
Query: 119 TKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGK 166
KL + KK + +VC DT+R AY+QL+Q + ++P YG K
Sbjct: 117 GKLCRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLYGDPDNK 164
>sp|Q977V2|SRP54_HALVD Signal recognition particle 54 kDa protein OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=srp54 PE=1 SV=1
Length = 465
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL +LG + +L L + ++E+ + ++KEI +LL ADV++ LV L ++++
Sbjct: 1 MVLDNLGSSLRGSLDKLRGKSRLDEDDVQEIVKEIQRSLLSADVDVSLVMDLSDSIKTRA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
+E G + R + VY+EL+ L+ G P + + IM GLQGSGKTTT K
Sbjct: 61 LEEEPPGGTSARDHVLKIVYEELVDLI--GESTEIPLESQ--TIMLAGLQGSGKTTTSAK 116
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
+A+ + KK + ++ DTFR GAYDQ KQ +A + FYG
Sbjct: 117 MAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFYGD 158
>sp|A3MWX6|SRP54_PYRCJ Signal recognition particle 54 kDa protein OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1
Length = 431
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
M L+++ K+ +R + I+E VL + +EI +LL+ADV ++LVK ++ + I
Sbjct: 1 MKLSEVFSKLIEKIRGVD---YIDEAVLQELSREIQRSLLKADVPLELVKAFTDSAVKRI 57
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
++ +G+ R + +Y+EL+KL+ A KP V++ +G++GSGKTTT K
Sbjct: 58 REEKPPAGIPPREYLVYVLYEELVKLLGGEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAK 117
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGK 166
LA + K+ +K LV DT R A+DQLKQ A K +PFYG GK
Sbjct: 118 LAKYLAKRGYKVGLVETDTIRPAAFDQLKQLAEKIGVPFYGERDGK 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,990,001
Number of Sequences: 539616
Number of extensions: 2573380
Number of successful extensions: 10947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 10671
Number of HSP's gapped (non-prelim): 247
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)