Query psy4311
Match_columns 190
No_of_seqs 294 out of 2078
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:19:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0780|consensus 100.0 6.3E-36 1.4E-40 253.7 18.2 185 1-185 1-196 (483)
2 COG0541 Ffh Signal recognition 100.0 2.2E-35 4.7E-40 254.4 20.5 184 2-185 1-195 (451)
3 TIGR01425 SRP54_euk signal rec 100.0 4.5E-33 9.7E-38 243.5 20.8 184 2-185 1-195 (429)
4 PRK10867 signal recognition pa 100.0 1.5E-30 3.2E-35 228.5 20.9 184 2-185 1-196 (433)
5 TIGR00959 ffh signal recogniti 100.0 2.3E-29 4.9E-34 220.9 20.6 183 3-185 1-195 (428)
6 COG0552 FtsY Signal recognitio 100.0 1.3E-29 2.9E-34 212.9 17.4 158 24-185 61-234 (340)
7 PRK00771 signal recognition pa 100.0 1.8E-28 3.9E-33 215.7 19.2 179 6-185 1-188 (437)
8 PRK10416 signal recognition pa 100.0 9E-27 2E-31 198.0 20.1 175 3-185 24-209 (318)
9 KOG0781|consensus 99.9 4.6E-27 1E-31 204.0 15.8 179 7-185 277-479 (587)
10 PRK14974 cell division protein 99.9 4.9E-26 1.1E-30 194.5 19.8 162 23-185 58-235 (336)
11 TIGR00064 ftsY signal recognit 99.9 8.1E-24 1.7E-28 176.5 16.7 154 28-185 3-167 (272)
12 PRK06995 flhF flagellar biosyn 99.9 2E-21 4.3E-26 172.5 18.0 168 4-185 173-347 (484)
13 PRK12723 flagellar biosynthesi 99.9 2.8E-21 6.1E-26 168.0 17.7 150 30-185 109-267 (388)
14 PRK14723 flhF flagellar biosyn 99.9 2.9E-21 6.2E-26 178.5 16.3 146 29-185 124-276 (767)
15 PRK05703 flhF flagellar biosyn 99.9 1.3E-20 2.9E-25 165.8 16.9 149 26-185 157-312 (424)
16 TIGR03499 FlhF flagellar biosy 99.9 1.3E-20 2.8E-25 158.0 15.5 144 28-182 132-282 (282)
17 COG1419 FlhF Flagellar GTP-bin 99.9 6.1E-21 1.3E-25 164.6 12.8 87 100-186 202-295 (407)
18 PRK12724 flagellar biosynthesi 99.9 2.2E-20 4.7E-25 163.0 16.1 179 3-185 116-312 (432)
19 PRK11889 flhF flagellar biosyn 99.8 3.9E-20 8.4E-25 160.1 14.2 151 27-185 175-333 (436)
20 PF00448 SRP54: SRP54-type pro 99.8 1.1E-20 2.3E-25 150.8 8.5 85 101-185 1-96 (196)
21 PRK12726 flagellar biosynthesi 99.8 1E-19 2.2E-24 156.9 14.9 146 33-185 145-298 (407)
22 PRK14722 flhF flagellar biosyn 99.8 4.7E-19 1E-23 153.2 15.7 146 32-185 76-228 (374)
23 PRK14721 flhF flagellar biosyn 99.8 4.7E-18 1E-22 149.0 17.0 142 32-185 134-282 (420)
24 PRK12727 flagellar biosynthesi 99.7 2.8E-16 6.1E-21 140.4 15.0 143 30-185 292-441 (559)
25 PRK06731 flhF flagellar biosyn 99.7 1.9E-16 4E-21 132.0 10.4 152 25-185 8-167 (270)
26 COG1120 FepC ABC-type cobalami 99.4 6.3E-14 1.4E-18 115.6 4.1 91 92-188 19-109 (258)
27 cd03115 SRP The signal recogni 99.3 4.7E-12 1E-16 98.3 8.5 82 103-184 2-94 (173)
28 COG4555 NatA ABC-type Na+ tran 99.2 2.4E-11 5.1E-16 96.7 5.2 67 92-158 19-106 (245)
29 COG4586 ABC-type uncharacteriz 99.0 8.6E-11 1.9E-15 97.3 2.7 52 90-141 39-90 (325)
30 COG1121 ZnuC ABC-type Mn/Zn tr 99.0 1.1E-10 2.3E-15 96.2 2.0 89 91-188 20-110 (254)
31 COG4152 ABC-type uncharacteriz 99.0 1.3E-10 2.9E-15 94.9 1.1 85 91-175 18-120 (300)
32 COG0410 LivF ABC-type branched 99.0 2.7E-10 5.8E-15 92.1 2.6 88 92-184 20-107 (237)
33 COG4559 ABC-type hemin transpo 99.0 4.5E-10 9.7E-15 90.2 3.5 85 93-183 19-103 (259)
34 COG1131 CcmA ABC-type multidru 98.9 8.2E-10 1.8E-14 93.2 4.6 68 91-158 21-109 (293)
35 PF02881 SRP54_N: SRP54-type p 98.9 1.8E-08 4E-13 68.0 10.4 74 6-83 1-75 (75)
36 COG3842 PotA ABC-type spermidi 98.9 6.5E-10 1.4E-14 95.6 3.3 81 91-179 21-101 (352)
37 COG3638 ABC-type phosphate/pho 98.9 6.4E-10 1.4E-14 90.3 2.9 94 92-188 21-114 (258)
38 COG0411 LivG ABC-type branched 98.9 2.1E-10 4.6E-15 93.4 -0.2 85 91-180 20-104 (250)
39 COG4604 CeuD ABC-type enteroch 98.9 1.3E-09 2.7E-14 86.8 3.9 87 92-184 18-104 (252)
40 COG1136 SalX ABC-type antimicr 98.9 1.3E-09 2.8E-14 88.5 3.6 83 92-176 22-104 (226)
41 PRK12337 2-phosphoglycerate ki 98.9 8.3E-09 1.8E-13 91.5 8.7 104 31-142 179-292 (475)
42 COG1126 GlnQ ABC-type polar am 98.8 2.7E-09 5.9E-14 85.8 3.8 80 92-176 19-98 (240)
43 COG3839 MalK ABC-type sugar tr 98.8 3.3E-09 7.1E-14 90.9 2.5 78 91-176 19-96 (338)
44 PRK04220 2-phosphoglycerate ki 98.7 4.2E-08 9.1E-13 82.9 8.7 102 35-142 22-129 (301)
45 COG1127 Ttg2A ABC-type transpo 98.7 1E-08 2.3E-13 83.6 4.5 85 92-179 25-109 (263)
46 TIGR00750 lao LAO/AO transport 98.7 5.4E-08 1.2E-12 82.3 8.0 47 96-142 29-75 (300)
47 COG1129 MglA ABC-type sugar tr 98.7 1.3E-08 2.8E-13 91.0 4.3 88 92-184 25-112 (500)
48 COG2884 FtsE Predicted ATPase 98.7 1.4E-08 2.9E-13 80.4 3.6 82 92-176 19-100 (223)
49 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 1.1E-08 2.4E-13 82.0 3.0 48 92-139 21-68 (218)
50 PRK09536 btuD corrinoid ABC tr 98.7 8E-09 1.7E-13 90.8 2.2 52 92-143 20-71 (402)
51 PRK13537 nodulation ABC transp 98.7 8.9E-09 1.9E-13 87.3 2.3 49 92-140 24-72 (306)
52 COG1118 CysA ABC-type sulfate/ 98.6 1.4E-08 3E-13 85.5 2.7 80 93-180 20-102 (345)
53 TIGR01166 cbiO cobalt transpor 98.6 1.1E-08 2.4E-13 80.5 2.1 48 92-139 9-56 (190)
54 TIGR03608 L_ocin_972_ABC putat 98.6 1.7E-08 3.7E-13 80.2 3.2 49 92-140 15-63 (206)
55 COG1116 TauB ABC-type nitrate/ 98.6 1.8E-08 3.9E-13 82.5 3.3 49 91-139 19-67 (248)
56 PRK13536 nodulation factor exp 98.6 1.2E-08 2.6E-13 87.8 2.0 50 91-140 57-106 (340)
57 cd03259 ABC_Carb_Solutes_like 98.6 1.6E-08 3.4E-13 81.0 2.4 48 92-139 17-64 (213)
58 TIGR01188 drrA daunorubicin re 98.6 1.4E-08 3E-13 85.9 2.1 49 92-140 10-58 (302)
59 cd03225 ABC_cobalt_CbiO_domain 98.6 2.2E-08 4.7E-13 80.0 3.1 48 92-139 18-65 (211)
60 TIGR02673 FtsE cell division A 98.6 1.6E-08 3.6E-13 80.9 2.4 49 92-140 19-67 (214)
61 COG1125 OpuBA ABC-type proline 98.6 2.3E-08 5E-13 82.4 3.1 56 91-146 17-72 (309)
62 cd03257 ABC_NikE_OppD_transpor 98.6 1.9E-08 4.1E-13 81.1 2.5 49 92-140 22-70 (228)
63 PRK11629 lolD lipoprotein tran 98.6 2.3E-08 5E-13 81.2 2.9 51 92-142 26-76 (233)
64 cd03261 ABC_Org_Solvent_Resist 98.6 1.7E-08 3.6E-13 82.1 2.0 49 92-140 17-65 (235)
65 PRK09270 nucleoside triphospha 98.6 8.5E-08 1.8E-12 77.9 6.1 45 99-143 31-76 (229)
66 cd03258 ABC_MetN_methionine_tr 98.6 2.2E-08 4.7E-13 81.3 2.6 50 92-141 22-71 (233)
67 cd03218 ABC_YhbG The ABC trans 98.6 3.2E-08 7E-13 80.1 3.5 48 92-139 17-64 (232)
68 cd03263 ABC_subfamily_A The AB 98.6 2.1E-08 4.6E-13 80.5 2.4 48 92-139 19-66 (220)
69 COG1137 YhbG ABC-type (unclass 98.6 1.9E-09 4.2E-14 85.8 -3.6 76 91-171 20-95 (243)
70 cd03262 ABC_HisP_GlnQ_permease 98.6 2.3E-08 5E-13 79.9 2.5 49 92-140 17-65 (213)
71 cd03224 ABC_TM1139_LivF_branch 98.6 3.1E-08 6.7E-13 79.6 3.3 49 92-140 17-65 (222)
72 cd03301 ABC_MalK_N The N-termi 98.6 2E-08 4.4E-13 80.3 2.2 48 92-139 17-64 (213)
73 TIGR00960 3a0501s02 Type II (G 98.6 1.8E-08 3.8E-13 80.9 1.8 48 92-139 20-67 (216)
74 TIGR00554 panK_bact pantothena 98.6 7.8E-08 1.7E-12 81.1 5.8 44 99-142 60-105 (290)
75 TIGR02315 ABC_phnC phosphonate 98.6 2.3E-08 4.9E-13 81.5 2.5 49 92-140 19-67 (243)
76 cd03226 ABC_cobalt_CbiO_domain 98.6 1.9E-08 4.1E-13 80.1 1.9 47 92-138 17-63 (205)
77 TIGR02314 ABC_MetN D-methionin 98.6 2.9E-08 6.4E-13 85.6 3.1 51 92-142 22-72 (343)
78 cd03235 ABC_Metallic_Cations A 98.6 2.3E-08 5E-13 80.0 2.2 47 92-138 16-62 (213)
79 cd03219 ABC_Mj1267_LivG_branch 98.6 3.7E-08 8E-13 80.0 3.4 49 92-140 17-65 (236)
80 cd03292 ABC_FtsE_transporter F 98.6 2.2E-08 4.7E-13 80.1 2.0 49 92-140 18-66 (214)
81 cd03256 ABC_PhnC_transporter A 98.6 2.9E-08 6.2E-13 80.8 2.7 50 92-141 18-67 (241)
82 cd03296 ABC_CysA_sulfate_impor 98.6 2.5E-08 5.4E-13 81.3 2.3 48 92-139 19-66 (239)
83 PRK13538 cytochrome c biogenes 98.6 2.7E-08 5.7E-13 79.3 2.3 48 92-139 18-65 (204)
84 cd03265 ABC_DrrA DrrA is the A 98.6 2.8E-08 6.1E-13 80.0 2.4 48 92-139 17-64 (220)
85 TIGR03410 urea_trans_UrtE urea 98.6 4.4E-08 9.6E-13 79.3 3.5 50 92-141 17-66 (230)
86 cd03293 ABC_NrtD_SsuB_transpor 98.6 2.3E-08 4.9E-13 80.5 1.8 46 92-137 21-66 (220)
87 TIGR02211 LolD_lipo_ex lipopro 98.6 2.7E-08 5.8E-13 80.0 2.0 48 92-139 22-69 (221)
88 PRK11248 tauB taurine transpor 98.6 2.8E-08 6E-13 82.1 2.1 47 92-138 18-64 (255)
89 TIGR03522 GldA_ABC_ATP gliding 98.6 2.6E-08 5.6E-13 84.2 2.0 49 92-140 19-67 (301)
90 cd03229 ABC_Class3 This class 98.6 2.7E-08 6E-13 77.7 2.0 48 92-139 17-64 (178)
91 PRK10895 lipopolysaccharide AB 98.6 4.6E-08 1E-12 79.8 3.4 49 92-140 20-68 (241)
92 TIGR01288 nodI ATP-binding ABC 98.6 2.8E-08 6E-13 84.1 2.1 48 92-139 21-68 (303)
93 cd03215 ABC_Carb_Monos_II This 98.6 4.3E-08 9.3E-13 76.8 3.1 50 92-141 17-66 (182)
94 PRK00889 adenylylsulfate kinas 98.6 1.1E-07 2.3E-12 73.9 5.3 44 99-142 2-45 (175)
95 PRK14250 phosphate ABC transpo 98.6 2.9E-08 6.2E-13 81.2 2.1 48 92-139 20-67 (241)
96 PRK10584 putative ABC transpor 98.6 3E-08 6.6E-13 80.1 2.2 48 92-139 27-74 (228)
97 cd03260 ABC_PstB_phosphate_tra 98.5 4.2E-08 9E-13 79.3 2.9 48 92-139 17-69 (227)
98 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 3E-08 6.5E-13 80.7 2.1 48 92-139 18-65 (236)
99 PRK09435 membrane ATPase/prote 98.5 3.7E-07 8.1E-12 78.3 8.9 43 99-141 54-96 (332)
100 PRK10247 putative ABC transpor 98.5 5.1E-08 1.1E-12 78.9 3.4 49 92-140 24-72 (225)
101 cd03269 ABC_putative_ATPase Th 98.5 2.9E-08 6.2E-13 79.3 1.8 46 92-137 17-62 (210)
102 COG0529 CysC Adenylylsulfate k 98.5 1.1E-07 2.3E-12 74.4 4.9 47 97-143 19-65 (197)
103 PRK13646 cbiO cobalt transport 98.5 3.5E-08 7.6E-13 82.8 2.3 50 91-140 23-72 (286)
104 PRK11153 metN DL-methionine tr 98.5 4.3E-08 9.2E-13 84.5 2.9 51 92-142 22-72 (343)
105 cd03216 ABC_Carb_Monos_I This 98.5 4.7E-08 1E-12 75.5 2.8 49 92-140 17-65 (163)
106 PRK11650 ugpC glycerol-3-phosp 98.5 3.5E-08 7.7E-13 85.4 2.4 50 92-141 21-70 (356)
107 PRK11124 artP arginine transpo 98.5 3.9E-08 8.4E-13 80.3 2.4 48 92-139 19-66 (242)
108 TIGR01184 ntrCD nitrate transp 98.5 3.7E-08 8E-13 80.0 2.2 46 93-138 3-48 (230)
109 TIGR01186 proV glycine betaine 98.5 4.9E-08 1.1E-12 84.8 3.1 52 92-143 10-61 (363)
110 PRK09493 glnQ glutamine ABC tr 98.5 3.9E-08 8.5E-13 80.1 2.4 49 92-140 18-66 (240)
111 cd03298 ABC_ThiQ_thiamine_tran 98.5 3.7E-08 8E-13 78.7 2.2 47 93-139 16-62 (211)
112 PRK11614 livF leucine/isoleuci 98.5 5E-08 1.1E-12 79.4 2.9 50 92-141 22-71 (237)
113 cd03295 ABC_OpuCA_Osmoprotecti 98.5 4.4E-08 9.4E-13 80.0 2.4 48 92-139 18-65 (242)
114 PRK10908 cell division protein 98.5 3.9E-08 8.4E-13 79.3 2.0 49 92-140 19-67 (222)
115 TIGR01189 ccmA heme ABC export 98.5 4.2E-08 9.1E-13 77.8 2.1 48 92-139 17-64 (198)
116 PRK13540 cytochrome c biogenes 98.5 4.7E-08 1E-12 77.7 2.3 48 92-139 18-65 (200)
117 PRK11300 livG leucine/isoleuci 98.5 6.9E-08 1.5E-12 79.3 3.4 50 92-141 22-71 (255)
118 PRK13652 cbiO cobalt transport 98.5 4.8E-08 1E-12 81.6 2.5 50 91-140 20-69 (277)
119 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 4.8E-08 1E-12 79.4 2.4 48 92-139 20-67 (238)
120 cd03244 ABCC_MRP_domain2 Domai 98.5 4.9E-08 1.1E-12 78.5 2.4 49 91-139 20-68 (221)
121 PRK11701 phnK phosphonate C-P 98.5 6.9E-08 1.5E-12 79.7 3.3 47 92-138 23-69 (258)
122 PRK13635 cbiO cobalt transport 98.5 5E-08 1.1E-12 81.6 2.5 50 92-141 24-73 (279)
123 PRK13541 cytochrome c biogenes 98.5 4.8E-08 1E-12 77.3 2.3 46 94-139 19-64 (195)
124 COG1134 TagH ABC-type polysacc 98.5 6E-08 1.3E-12 79.2 2.9 66 91-157 43-119 (249)
125 COG4133 CcmA ABC-type transpor 98.5 1.3E-07 2.7E-12 74.7 4.5 65 92-156 19-104 (209)
126 PRK13650 cbiO cobalt transport 98.5 5.6E-08 1.2E-12 81.3 2.7 51 91-141 23-73 (279)
127 cd03228 ABCC_MRP_Like The MRP 98.5 5.3E-08 1.1E-12 75.6 2.3 48 92-139 19-66 (171)
128 cd03268 ABC_BcrA_bacitracin_re 98.5 4.9E-08 1.1E-12 77.8 2.2 48 92-139 17-64 (208)
129 cd03214 ABC_Iron-Siderophores_ 98.5 8.7E-08 1.9E-12 75.0 3.6 48 92-139 16-63 (180)
130 cd03264 ABC_drug_resistance_li 98.5 4.9E-08 1.1E-12 78.0 2.2 48 92-140 17-64 (211)
131 cd02025 PanK Pantothenate kina 98.5 1.4E-07 3E-12 76.6 4.8 40 103-142 1-42 (220)
132 cd03266 ABC_NatA_sodium_export 98.5 5.4E-08 1.2E-12 78.1 2.4 48 92-139 22-69 (218)
133 TIGR02769 nickel_nikE nickel i 98.5 6.4E-08 1.4E-12 80.2 2.9 50 92-141 28-77 (265)
134 TIGR02770 nickel_nikD nickel i 98.5 5.5E-08 1.2E-12 78.9 2.4 47 93-139 4-54 (230)
135 cd03252 ABCC_Hemolysin The ABC 98.5 5.5E-08 1.2E-12 79.1 2.4 48 92-139 19-66 (237)
136 PRK11264 putative amino-acid A 98.5 5.7E-08 1.2E-12 79.6 2.5 47 92-138 20-66 (250)
137 cd03231 ABC_CcmA_heme_exporter 98.5 5.3E-08 1.2E-12 77.5 2.2 48 92-139 17-64 (201)
138 PRK13539 cytochrome c biogenes 98.5 5.1E-08 1.1E-12 77.9 2.1 47 92-138 19-65 (207)
139 TIGR00972 3a0107s01c2 phosphat 98.5 5.6E-08 1.2E-12 79.6 2.4 48 92-139 18-70 (247)
140 PRK13638 cbiO cobalt transport 98.5 4.8E-08 1E-12 81.2 2.0 48 92-139 18-65 (271)
141 cd03251 ABCC_MsbA MsbA is an e 98.5 5.9E-08 1.3E-12 78.7 2.4 48 92-139 19-66 (234)
142 TIGR03411 urea_trans_UrtD urea 98.5 5.6E-08 1.2E-12 79.3 2.3 48 92-139 19-66 (242)
143 PRK13644 cbiO cobalt transport 98.5 6.7E-08 1.5E-12 80.6 2.8 49 91-139 18-66 (274)
144 TIGR02324 CP_lyasePhnL phospho 98.5 6.7E-08 1.5E-12 77.9 2.7 44 92-135 25-68 (224)
145 PRK15177 Vi polysaccharide exp 98.5 5.7E-08 1.2E-12 78.2 2.3 42 92-133 4-45 (213)
146 PRK15112 antimicrobial peptide 98.5 5.8E-08 1.2E-12 80.7 2.3 49 92-140 30-78 (267)
147 TIGR03005 ectoine_ehuA ectoine 98.5 5.3E-08 1.1E-12 80.0 2.1 49 92-140 17-65 (252)
148 cd03254 ABCC_Glucan_exporter_l 98.5 5.9E-08 1.3E-12 78.4 2.4 47 92-138 20-66 (229)
149 PF00005 ABC_tran: ABC transpo 98.5 1.6E-08 3.5E-13 75.1 -0.9 49 93-141 3-51 (137)
150 cd03246 ABCC_Protease_Secretio 98.5 7.1E-08 1.5E-12 75.0 2.7 49 92-140 19-67 (173)
151 PRK06696 uridine kinase; Valid 98.5 5.1E-07 1.1E-11 73.1 7.8 46 99-144 20-65 (223)
152 TIGR01978 sufC FeS assembly AT 98.5 7.9E-08 1.7E-12 78.3 3.0 49 92-140 17-67 (243)
153 cd03245 ABCC_bacteriocin_expor 98.5 6.2E-08 1.3E-12 77.8 2.3 47 92-138 21-67 (220)
154 cd03294 ABC_Pro_Gly_Bertaine T 98.5 5.4E-08 1.2E-12 81.0 2.0 49 91-139 40-88 (269)
155 PRK13637 cbiO cobalt transport 98.5 5E-08 1.1E-12 82.0 1.8 49 91-139 23-71 (287)
156 PRK13641 cbiO cobalt transport 98.5 4.9E-08 1.1E-12 82.0 1.7 49 91-139 23-71 (287)
157 PRK10575 iron-hydroxamate tran 98.5 5.3E-08 1.1E-12 80.7 1.9 48 92-139 28-75 (265)
158 PF01583 APS_kinase: Adenylyls 98.5 1.7E-07 3.7E-12 72.2 4.5 43 100-142 1-43 (156)
159 PRK15056 manganese/iron transp 98.5 4.8E-08 1E-12 81.3 1.6 48 92-139 24-71 (272)
160 PRK13649 cbiO cobalt transport 98.5 5E-08 1.1E-12 81.5 1.7 48 92-139 24-71 (280)
161 TIGR02323 CP_lyasePhnK phospho 98.5 1.1E-07 2.3E-12 78.2 3.6 47 92-138 20-66 (253)
162 COG1135 AbcC ABC-type metal io 98.5 1.3E-07 2.8E-12 79.7 4.1 65 92-157 23-87 (339)
163 PRK13548 hmuV hemin importer A 98.5 6.7E-08 1.4E-12 79.9 2.4 49 92-140 19-67 (258)
164 PRK13648 cbiO cobalt transport 98.5 7.6E-08 1.7E-12 79.9 2.7 48 92-139 26-73 (269)
165 PRK10070 glycine betaine trans 98.5 8.9E-08 1.9E-12 84.2 3.2 51 91-141 44-94 (400)
166 cd03233 ABC_PDR_domain1 The pl 98.5 6.4E-08 1.4E-12 77.2 2.0 49 92-140 24-75 (202)
167 PRK11247 ssuB aliphatic sulfon 98.5 7.1E-08 1.5E-12 79.9 2.3 43 92-134 29-71 (257)
168 PRK13647 cbiO cobalt transport 98.5 7.3E-08 1.6E-12 80.4 2.4 49 91-139 21-69 (274)
169 COG3845 ABC-type uncharacteriz 98.5 2E-07 4.3E-12 82.6 5.1 86 92-182 21-106 (501)
170 cd03223 ABCD_peroxisomal_ALDP 98.5 9.2E-08 2E-12 74.0 2.8 43 92-134 18-60 (166)
171 cd03234 ABCG_White The White s 98.5 8.5E-08 1.8E-12 77.5 2.6 47 92-138 24-73 (226)
172 cd03253 ABCC_ATM1_transporter 98.5 7.4E-08 1.6E-12 78.2 2.3 48 92-139 18-65 (236)
173 PRK13645 cbiO cobalt transport 98.5 6.1E-08 1.3E-12 81.4 1.8 47 92-138 28-74 (289)
174 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 5.9E-08 1.3E-12 78.6 1.7 48 91-138 38-85 (224)
175 cd03230 ABC_DR_subfamily_A Thi 98.5 6.6E-08 1.4E-12 75.2 1.9 48 92-139 17-64 (173)
176 PRK11432 fbpC ferric transport 98.5 7.6E-08 1.6E-12 83.3 2.4 49 92-140 23-71 (351)
177 cd03222 ABC_RNaseL_inhibitor T 98.5 8.7E-08 1.9E-12 75.3 2.5 41 96-136 20-60 (177)
178 cd03247 ABCC_cytochrome_bd The 98.5 7.3E-08 1.6E-12 75.2 2.1 48 92-139 19-66 (178)
179 TIGR01277 thiQ thiamine ABC tr 98.5 7.1E-08 1.5E-12 77.3 2.0 47 93-139 16-62 (213)
180 PRK13632 cbiO cobalt transport 98.5 7.8E-08 1.7E-12 80.0 2.3 48 92-139 26-73 (271)
181 cd03267 ABC_NatA_like Similar 98.5 7.1E-08 1.5E-12 78.6 2.0 47 92-138 38-84 (236)
182 PRK11831 putative ABC transpor 98.5 6.7E-08 1.5E-12 80.3 1.8 49 92-140 24-72 (269)
183 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 7.6E-08 1.6E-12 72.9 1.9 43 92-134 17-59 (144)
184 TIGR03265 PhnT2 putative 2-ami 98.4 8E-08 1.7E-12 83.2 2.2 49 92-140 21-69 (353)
185 cd03248 ABCC_TAP TAP, the Tran 98.4 1E-07 2.2E-12 76.9 2.6 48 92-139 31-78 (226)
186 PRK13639 cbiO cobalt transport 98.4 7.2E-08 1.6E-12 80.4 1.8 48 92-139 19-66 (275)
187 PRK10771 thiQ thiamine transpo 98.4 8.6E-08 1.9E-12 77.8 2.1 47 93-139 17-63 (232)
188 PRK14242 phosphate transporter 98.4 1.2E-07 2.7E-12 77.8 3.1 48 92-139 23-75 (253)
189 PRK14267 phosphate ABC transpo 98.4 1E-07 2.2E-12 78.2 2.6 48 92-139 21-73 (253)
190 PRK13643 cbiO cobalt transport 98.4 7.8E-08 1.7E-12 80.8 1.9 49 91-139 22-70 (288)
191 PRK11231 fecE iron-dicitrate t 98.4 8.7E-08 1.9E-12 78.9 2.1 48 92-139 19-66 (255)
192 cd03250 ABCC_MRP_domain1 Domai 98.4 1.1E-07 2.4E-12 75.6 2.6 43 92-134 22-64 (204)
193 cd03290 ABCC_SUR1_N The SUR do 98.4 1.1E-07 2.4E-12 76.4 2.5 47 92-138 18-64 (218)
194 TIGR03873 F420-0_ABC_ATP propo 98.4 8.2E-08 1.8E-12 79.1 1.9 48 92-139 18-65 (256)
195 cd03300 ABC_PotA_N PotA is an 98.4 1.2E-07 2.6E-12 77.0 2.7 48 92-139 17-64 (232)
196 PRK14247 phosphate ABC transpo 98.4 1.5E-07 3.2E-12 77.2 3.3 49 92-140 20-73 (250)
197 PRK13543 cytochrome c biogenes 98.4 9.8E-08 2.1E-12 76.7 2.1 47 92-138 28-74 (214)
198 PRK13640 cbiO cobalt transport 98.4 1.3E-07 2.9E-12 79.1 3.0 49 92-140 24-75 (282)
199 PRK09544 znuC high-affinity zi 98.4 9.6E-08 2.1E-12 78.8 2.1 42 92-133 21-62 (251)
200 cd03297 ABC_ModC_molybdenum_tr 98.4 1.1E-07 2.3E-12 76.3 2.2 46 93-139 16-61 (214)
201 TIGR03740 galliderm_ABC gallid 98.4 1E-07 2.3E-12 76.8 2.1 46 92-137 17-62 (223)
202 PRK10418 nikD nickel transport 98.4 1.1E-07 2.5E-12 78.2 2.4 47 92-138 20-70 (254)
203 cd03369 ABCC_NFT1 Domain 2 of 98.4 1.4E-07 3E-12 75.3 2.7 48 92-139 25-72 (207)
204 PLN02796 D-glycerate 3-kinase 98.4 2.4E-06 5.1E-11 73.6 10.4 47 99-145 98-144 (347)
205 PRK10253 iron-enterobactin tra 98.4 1E-07 2.2E-12 79.0 2.0 48 92-139 24-71 (265)
206 cd03213 ABCG_EPDR ABCG transpo 98.4 1.2E-07 2.6E-12 75.2 2.2 48 92-139 26-75 (194)
207 PRK13651 cobalt transporter AT 98.4 1.1E-07 2.5E-12 80.6 2.3 48 91-138 23-70 (305)
208 PRK14235 phosphate transporter 98.4 1.5E-07 3.3E-12 78.1 3.0 48 92-139 36-88 (267)
209 PRK13636 cbiO cobalt transport 98.4 1E-07 2.3E-12 79.8 2.0 48 92-139 23-70 (283)
210 COG4181 Predicted ABC-type tra 98.4 2.6E-07 5.6E-12 72.3 4.0 78 93-172 28-105 (228)
211 PRK13634 cbiO cobalt transport 98.4 1E-07 2.2E-12 80.2 1.9 49 91-139 23-71 (290)
212 PRK13633 cobalt transporter AT 98.4 1.2E-07 2.6E-12 79.3 2.1 49 92-140 27-75 (280)
213 TIGR00235 udk uridine kinase. 98.4 3.7E-07 8E-12 73.0 4.9 42 98-141 3-44 (207)
214 COG0396 sufC Cysteine desulfur 98.4 2.4E-07 5.3E-12 75.2 3.8 67 93-164 22-90 (251)
215 PRK13631 cbiO cobalt transport 98.4 1.2E-07 2.5E-12 81.1 2.1 49 91-139 42-90 (320)
216 cd03299 ABC_ModC_like Archeal 98.4 1.3E-07 2.8E-12 77.0 2.2 48 92-139 16-63 (235)
217 PRK09452 potA putrescine/sperm 98.4 1.2E-07 2.5E-12 82.8 2.1 49 92-140 31-79 (375)
218 TIGR00968 3a0106s01 sulfate AB 98.4 1.4E-07 3E-12 77.0 2.3 48 92-139 17-64 (237)
219 PRK10619 histidine/lysine/argi 98.4 1.2E-07 2.7E-12 78.1 2.0 48 92-139 22-69 (257)
220 PRK11000 maltose/maltodextrin 98.4 1.1E-07 2.4E-12 82.8 1.8 48 92-139 20-67 (369)
221 PRK13546 teichoic acids export 98.4 1.3E-07 2.8E-12 78.7 2.1 44 92-135 41-84 (264)
222 cd03217 ABC_FeS_Assembly ABC-t 98.4 1.7E-07 3.6E-12 74.6 2.6 50 92-141 17-68 (200)
223 PRK14251 phosphate ABC transpo 98.4 1.7E-07 3.7E-12 76.9 2.7 48 92-139 21-73 (251)
224 PRK05480 uridine/cytidine kina 98.4 5.6E-07 1.2E-11 71.9 5.6 41 99-141 4-44 (209)
225 PRK10744 pstB phosphate transp 98.4 1.8E-07 3.9E-12 77.3 2.9 48 92-139 30-82 (260)
226 PRK11022 dppD dipeptide transp 98.4 1.7E-07 3.7E-12 80.3 2.8 53 91-143 23-79 (326)
227 PRK10851 sulfate/thiosulfate t 98.4 1.2E-07 2.5E-12 82.1 1.8 49 92-140 19-67 (353)
228 PRK14241 phosphate transporter 98.4 1.5E-07 3.3E-12 77.6 2.4 48 92-139 21-73 (258)
229 TIGR03415 ABC_choXWV_ATP choli 98.4 2E-07 4.3E-12 81.5 3.2 47 91-137 40-86 (382)
230 COG1101 PhnK ABC-type uncharac 98.4 4.8E-07 1E-11 73.0 5.1 64 93-156 24-87 (263)
231 PRK13547 hmuV hemin importer A 98.4 1.4E-07 3E-12 78.8 2.1 48 92-139 18-73 (272)
232 TIGR03258 PhnT 2-aminoethylpho 98.4 1.5E-07 3.2E-12 81.8 2.3 49 92-140 22-72 (362)
233 PRK14248 phosphate ABC transpo 98.4 2E-07 4.4E-12 77.3 3.0 48 92-139 38-90 (268)
234 TIGR03771 anch_rpt_ABC anchore 98.4 2.2E-07 4.8E-12 75.1 3.2 41 98-138 3-43 (223)
235 PRK10762 D-ribose transporter 98.4 1.4E-07 3.1E-12 84.9 2.2 49 92-140 21-69 (501)
236 PRK14273 phosphate ABC transpo 98.4 2.1E-07 4.5E-12 76.6 3.0 48 92-139 24-76 (254)
237 cd02023 UMPK Uridine monophosp 98.4 4.1E-07 8.9E-12 72.0 4.6 37 103-141 1-37 (198)
238 PRK15439 autoinducer 2 ABC tra 98.4 1.7E-07 3.8E-12 84.6 2.6 50 92-141 28-77 (510)
239 TIGR02982 heterocyst_DevA ABC 98.4 1.3E-07 2.9E-12 76.1 1.7 48 92-139 22-69 (220)
240 PRK14238 phosphate transporter 98.4 2.1E-07 4.6E-12 77.5 2.9 48 92-139 41-93 (271)
241 COG0466 Lon ATP-dependent Lon 98.4 4.2E-06 9.1E-11 77.3 11.5 123 6-137 231-386 (782)
242 TIGR02142 modC_ABC molybdenum 98.4 1.3E-07 2.9E-12 81.7 1.8 47 93-139 15-61 (354)
243 PRK14270 phosphate ABC transpo 98.4 2.2E-07 4.8E-12 76.2 3.0 48 92-139 21-73 (251)
244 PRK13642 cbiO cobalt transport 98.4 1.7E-07 3.6E-12 78.3 2.2 48 92-139 24-71 (277)
245 PRK14259 phosphate ABC transpo 98.4 2E-07 4.3E-12 77.6 2.6 48 92-139 30-82 (269)
246 PRK10419 nikE nickel transport 98.4 1.8E-07 4E-12 77.7 2.4 49 92-140 29-77 (268)
247 CHL00131 ycf16 sulfate ABC tra 98.4 1.7E-07 3.8E-12 76.8 2.2 48 92-139 24-73 (252)
248 PRK10938 putative molybdenum t 98.4 3.2E-07 7E-12 82.3 4.0 48 92-139 20-67 (490)
249 PRK14262 phosphate ABC transpo 98.4 2.3E-07 5E-12 76.0 2.7 48 92-139 20-72 (250)
250 cd03288 ABCC_SUR2 The SUR doma 98.4 2E-07 4.3E-12 76.9 2.3 49 92-140 38-86 (257)
251 PF03308 ArgK: ArgK protein; 98.4 6.2E-07 1.3E-11 74.1 5.2 42 99-140 27-68 (266)
252 PRK09700 D-allose transporter 98.4 2.6E-07 5.6E-12 83.3 3.2 48 92-139 280-327 (510)
253 PRK03695 vitamin B12-transport 98.4 1.9E-07 4.1E-12 76.7 2.1 49 92-141 13-61 (248)
254 cd03291 ABCC_CFTR1 The CFTR su 98.3 2.1E-07 4.5E-12 78.2 2.3 44 91-134 53-96 (282)
255 PRK09700 D-allose transporter 98.3 1.8E-07 3.9E-12 84.4 2.0 49 92-140 22-70 (510)
256 PRK14274 phosphate ABC transpo 98.3 2.8E-07 6.1E-12 76.0 3.0 48 92-139 29-81 (259)
257 PRK14253 phosphate ABC transpo 98.3 3.2E-07 7E-12 75.1 3.3 49 91-139 19-72 (249)
258 PRK11144 modC molybdate transp 98.3 1.7E-07 3.8E-12 81.0 1.8 47 93-139 16-62 (352)
259 PRK09580 sufC cysteine desulfu 98.3 2.2E-07 4.7E-12 76.0 2.3 49 92-140 18-68 (248)
260 PRK14269 phosphate ABC transpo 98.3 2.4E-07 5.3E-12 75.8 2.5 49 92-140 19-70 (246)
261 PRK15093 antimicrobial peptide 98.3 2.9E-07 6.4E-12 78.9 3.0 53 91-143 23-79 (330)
262 PRK14240 phosphate transporter 98.3 2.9E-07 6.2E-12 75.5 2.8 48 92-139 20-72 (250)
263 COG1123 ATPase components of v 98.3 2.5E-07 5.5E-12 83.4 2.6 48 91-138 307-354 (539)
264 cd03237 ABC_RNaseL_inhibitor_d 98.3 3.7E-07 8E-12 75.2 3.4 37 98-134 22-58 (246)
265 PRK11607 potG putrescine trans 98.3 2.2E-07 4.7E-12 81.2 2.1 48 92-139 36-83 (377)
266 COG1119 ModF ABC-type molybden 98.3 6.2E-07 1.3E-11 73.4 4.6 50 92-141 48-97 (257)
267 COG1124 DppF ABC-type dipeptid 98.3 2.9E-07 6.2E-12 75.2 2.7 48 91-138 23-70 (252)
268 PRK09473 oppD oligopeptide tra 98.3 2.6E-07 5.7E-12 79.2 2.6 53 91-143 32-87 (330)
269 PRK14237 phosphate transporter 98.3 2.8E-07 6.1E-12 76.5 2.7 48 92-139 37-89 (267)
270 PRK14256 phosphate ABC transpo 98.3 3.2E-07 6.9E-12 75.4 3.0 48 92-139 21-73 (252)
271 PRK11308 dppF dipeptide transp 98.3 2.8E-07 6.1E-12 79.0 2.7 53 91-143 31-83 (327)
272 PRK14272 phosphate ABC transpo 98.3 2.9E-07 6.4E-12 75.4 2.7 48 92-139 21-73 (252)
273 PRK14263 phosphate ABC transpo 98.3 2.8E-07 6.1E-12 76.4 2.6 48 92-139 25-77 (261)
274 KOG0058|consensus 98.3 3.9E-07 8.5E-12 83.9 3.7 49 92-140 485-533 (716)
275 PRK05541 adenylylsulfate kinas 98.3 6.4E-07 1.4E-11 69.6 4.4 43 99-141 5-47 (176)
276 TIGR02868 CydC thiol reductant 98.3 3.1E-07 6.6E-12 83.1 2.9 49 92-140 352-400 (529)
277 PRK14249 phosphate ABC transpo 98.3 2.9E-07 6.3E-12 75.6 2.5 48 92-139 21-73 (251)
278 PRK14236 phosphate transporter 98.3 3.1E-07 6.8E-12 76.4 2.7 49 92-140 42-95 (272)
279 PRK15079 oligopeptide ABC tran 98.3 2.8E-07 6E-12 79.1 2.5 51 92-142 38-88 (331)
280 PRK09984 phosphonate/organopho 98.3 2.8E-07 6.1E-12 76.1 2.4 49 92-140 21-72 (262)
281 COG4674 Uncharacterized ABC-ty 98.3 1E-07 2.3E-12 75.8 -0.2 53 91-143 21-74 (249)
282 COG1122 CbiO ABC-type cobalt t 98.3 2.8E-07 6.1E-12 75.6 2.3 49 92-140 21-69 (235)
283 COG3840 ThiQ ABC-type thiamine 98.3 5.3E-07 1.1E-11 71.2 3.7 48 94-141 18-65 (231)
284 cd03232 ABC_PDR_domain2 The pl 98.3 2.3E-07 4.9E-12 73.4 1.6 47 92-138 24-72 (192)
285 PRK14243 phosphate transporter 98.3 4.8E-07 1E-11 75.0 3.6 48 92-139 27-79 (264)
286 COG1703 ArgK Putative periplas 98.3 1E-06 2.3E-11 74.0 5.5 44 98-141 48-91 (323)
287 PRK10982 galactose/methyl gala 98.3 3.5E-07 7.6E-12 82.1 2.9 49 92-140 15-63 (491)
288 PRK14268 phosphate ABC transpo 98.3 2.8E-07 6.2E-12 76.0 2.1 47 92-138 29-80 (258)
289 cd00267 ABC_ATPase ABC (ATP-bi 98.3 2.8E-07 6.1E-12 70.3 1.9 47 93-139 17-63 (157)
290 PRK03846 adenylylsulfate kinas 98.3 9.7E-07 2.1E-11 70.2 5.0 43 99-141 22-64 (198)
291 PLN03046 D-glycerate 3-kinase; 98.3 1.6E-06 3.5E-11 76.3 6.7 49 99-147 210-258 (460)
292 PRK14244 phosphate ABC transpo 98.3 4E-07 8.7E-12 74.7 2.8 47 92-138 22-73 (251)
293 COG1117 PstB ABC-type phosphat 98.3 6E-07 1.3E-11 72.4 3.6 81 92-179 24-111 (253)
294 PRK10762 D-ribose transporter 98.3 4.6E-07 9.9E-12 81.6 3.2 48 92-139 269-316 (501)
295 PRK14246 phosphate ABC transpo 98.3 3.6E-07 7.8E-12 75.5 2.4 42 92-133 27-68 (257)
296 PRK15439 autoinducer 2 ABC tra 98.3 4.2E-07 9E-12 82.1 3.0 49 92-140 280-328 (510)
297 COG4240 Predicted kinase [Gene 98.3 2.3E-06 4.9E-11 69.7 6.8 56 96-151 45-101 (300)
298 PRK11288 araG L-arabinose tran 98.3 3E-07 6.5E-12 82.8 1.9 48 92-139 270-317 (501)
299 cd03289 ABCC_CFTR2 The CFTR su 98.3 5.3E-07 1.1E-11 75.5 3.3 50 91-141 20-69 (275)
300 COG4608 AppF ABC-type oligopep 98.3 7.2E-07 1.6E-11 74.0 3.9 51 91-141 29-79 (268)
301 PRK10982 galactose/methyl gala 98.3 4.2E-07 9.1E-12 81.6 2.7 50 92-141 265-314 (491)
302 PRK13549 xylose transporter AT 98.3 3.4E-07 7.5E-12 82.5 2.1 48 92-139 22-71 (506)
303 PRK11288 araG L-arabinose tran 98.3 4.9E-07 1.1E-11 81.4 3.0 49 92-140 21-69 (501)
304 PRK14265 phosphate ABC transpo 98.3 4.9E-07 1.1E-11 75.4 2.8 48 92-139 37-89 (274)
305 PRK14254 phosphate ABC transpo 98.3 4E-07 8.6E-12 76.5 2.2 48 92-139 56-108 (285)
306 PRK14239 phosphate transporter 98.3 4.7E-07 1E-11 74.2 2.6 48 92-139 22-74 (252)
307 PRK10636 putative ABC transpor 98.3 3.8E-07 8.2E-12 84.6 2.2 43 92-134 18-60 (638)
308 cd03114 ArgK-like The function 98.3 1.3E-06 2.8E-11 66.7 4.7 39 103-141 1-39 (148)
309 PRK14258 phosphate ABC transpo 98.3 5E-07 1.1E-11 74.7 2.6 47 92-138 24-75 (261)
310 PRK11819 putative ABC transpor 98.3 4.4E-07 9.5E-12 82.8 2.4 43 92-134 24-66 (556)
311 PRK15064 ABC transporter ATP-b 98.3 4.7E-07 1E-11 82.1 2.5 43 92-134 18-60 (530)
312 PRK14260 phosphate ABC transpo 98.3 5.8E-07 1.3E-11 74.2 2.9 48 92-139 24-76 (259)
313 PRK14264 phosphate ABC transpo 98.3 5.1E-07 1.1E-11 76.5 2.6 49 92-140 62-115 (305)
314 PRK13549 xylose transporter AT 98.3 4E-07 8.8E-12 82.0 2.1 48 92-139 279-327 (506)
315 PRK14275 phosphate ABC transpo 98.3 5.1E-07 1.1E-11 75.8 2.5 47 92-138 56-107 (286)
316 PRK14245 phosphate ABC transpo 98.2 5.9E-07 1.3E-11 73.7 2.8 49 92-140 20-73 (250)
317 PRK07667 uridine kinase; Provi 98.2 2.2E-06 4.7E-11 68.0 6.0 42 100-141 16-57 (193)
318 cd03236 ABC_RNaseL_inhibitor_d 98.2 7E-07 1.5E-11 74.0 3.2 36 98-133 23-58 (255)
319 PRK14271 phosphate ABC transpo 98.2 7.3E-07 1.6E-11 74.5 3.3 48 92-139 38-90 (276)
320 PRK05439 pantothenate kinase; 98.2 4.2E-06 9.1E-11 71.3 7.8 45 98-142 83-129 (311)
321 PRK14266 phosphate ABC transpo 98.2 7.9E-07 1.7E-11 72.9 3.3 48 92-139 20-72 (250)
322 PRK10261 glutathione transport 98.2 5E-07 1.1E-11 83.6 2.3 50 92-141 341-390 (623)
323 cd02028 UMPK_like Uridine mono 98.2 1.4E-06 3.1E-11 68.4 4.6 40 103-142 1-40 (179)
324 PRK10636 putative ABC transpor 98.2 5.5E-07 1.2E-11 83.5 2.6 43 92-134 329-371 (638)
325 PRK15064 ABC transporter ATP-b 98.2 5.1E-07 1.1E-11 81.8 2.3 42 92-133 336-377 (530)
326 smart00382 AAA ATPases associa 98.2 1.2E-06 2.5E-11 63.3 3.8 41 101-141 2-42 (148)
327 PRK11147 ABC transporter ATPas 98.2 4.5E-07 9.7E-12 84.0 1.9 43 92-134 20-62 (635)
328 PRK14255 phosphate ABC transpo 98.2 7.2E-07 1.6E-11 73.2 2.9 47 92-138 22-73 (252)
329 COG0378 HypB Ni2+-binding GTPa 98.2 3.9E-06 8.5E-11 66.6 6.8 61 99-163 10-71 (202)
330 PHA02518 ParA-like protein; Pr 98.2 2.1E-06 4.6E-11 68.0 5.4 41 103-143 2-43 (211)
331 COG4525 TauB ABC-type taurine 98.2 9.4E-07 2E-11 70.5 3.2 47 92-138 22-68 (259)
332 PF00485 PRK: Phosphoribulokin 98.2 2E-06 4.4E-11 68.0 5.2 40 103-142 1-44 (194)
333 PRK14261 phosphate ABC transpo 98.2 6.7E-07 1.4E-11 73.5 2.5 48 92-139 23-75 (253)
334 COG4619 ABC-type uncharacteriz 98.2 2.2E-06 4.7E-11 67.0 5.1 48 92-139 20-67 (223)
335 TIGR00176 mobB molybdopterin-g 98.2 1.9E-06 4.1E-11 66.2 4.8 37 103-139 1-37 (155)
336 TIGR03269 met_CoM_red_A2 methy 98.2 5.7E-07 1.2E-11 81.3 2.2 44 92-135 301-344 (520)
337 PRK14252 phosphate ABC transpo 98.2 8.1E-07 1.7E-11 73.6 2.8 45 92-136 33-82 (265)
338 COG1132 MdlB ABC-type multidru 98.2 1.1E-06 2.3E-11 80.3 3.8 49 92-140 346-394 (567)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 6.7E-07 1.5E-11 81.5 2.6 43 92-134 22-64 (552)
340 TIGR02633 xylG D-xylose ABC tr 98.2 7.7E-07 1.7E-11 80.1 2.9 48 92-139 277-325 (500)
341 PRK11176 lipid transporter ATP 98.2 9.3E-07 2E-11 80.8 3.3 47 93-139 361-407 (582)
342 PRK15134 microcin C ABC transp 98.2 6E-07 1.3E-11 81.3 2.0 48 92-139 26-78 (529)
343 cd03238 ABC_UvrA The excision 98.2 9E-07 1.9E-11 69.5 2.7 41 91-135 11-51 (176)
344 TIGR03269 met_CoM_red_A2 methy 98.2 9E-07 1.9E-11 80.0 3.1 44 92-135 17-62 (520)
345 COG4107 PhnK ABC-type phosphon 98.2 2.6E-06 5.7E-11 67.0 5.2 56 82-137 11-68 (258)
346 PRK11147 ABC transporter ATPas 98.2 6.9E-07 1.5E-11 82.8 2.3 43 92-134 336-378 (635)
347 TIGR02633 xylG D-xylose ABC tr 98.2 8.6E-07 1.9E-11 79.7 2.9 49 92-140 18-68 (500)
348 COG4175 ProV ABC-type proline/ 98.2 1.5E-06 3.3E-11 73.7 4.1 79 91-171 44-122 (386)
349 cd00820 PEPCK_HprK Phosphoenol 98.2 1.7E-06 3.7E-11 62.6 3.8 43 93-141 7-49 (107)
350 PRK10261 glutathione transport 98.2 7.2E-07 1.6E-11 82.5 2.3 45 91-135 32-76 (623)
351 TIGR02857 CydD thiol reductant 98.2 9.5E-07 2.1E-11 79.9 3.0 48 93-140 340-387 (529)
352 PRK11819 putative ABC transpor 98.2 7.3E-07 1.6E-11 81.4 2.2 43 92-134 341-383 (556)
353 PRK10938 putative molybdenum t 98.2 9.2E-07 2E-11 79.4 2.6 47 92-138 277-324 (490)
354 PRK11160 cysteine/glutathione 98.2 1.1E-06 2.3E-11 80.5 3.1 47 93-139 358-404 (574)
355 TIGR00958 3a01208 Conjugate Tr 98.2 1.1E-06 2.4E-11 82.4 3.2 47 93-139 499-545 (711)
356 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 7.4E-07 1.6E-11 81.2 1.9 42 93-134 340-381 (552)
357 PRK10751 molybdopterin-guanine 98.2 4E-06 8.7E-11 65.7 5.7 38 100-137 5-42 (173)
358 PF13207 AAA_17: AAA domain; P 98.2 2.3E-06 5E-11 62.0 4.1 23 103-125 1-23 (121)
359 TIGR03797 NHPM_micro_ABC2 NHPM 98.2 9.9E-07 2.2E-11 82.3 2.6 48 93-140 471-518 (686)
360 TIGR01194 cyc_pep_trnsptr cycl 98.2 1.2E-06 2.7E-11 79.9 3.1 48 94-141 361-408 (555)
361 PRK15134 microcin C ABC transp 98.2 9.8E-07 2.1E-11 80.0 2.4 48 92-140 303-350 (529)
362 PRK10522 multidrug transporter 98.2 1E-06 2.2E-11 80.2 2.5 47 94-140 342-388 (547)
363 TIGR00455 apsK adenylylsulfate 98.2 3.1E-06 6.7E-11 66.3 5.0 43 99-141 16-58 (184)
364 PRK13545 tagH teichoic acids e 98.1 7.4E-07 1.6E-11 80.6 1.5 45 92-136 41-85 (549)
365 COG2274 SunT ABC-type bacterio 98.1 1.1E-06 2.3E-11 82.3 2.6 50 93-142 491-540 (709)
366 TIGR03796 NHPM_micro_ABC1 NHPM 98.1 9.8E-07 2.1E-11 82.6 2.4 47 93-139 497-543 (710)
367 PRK15453 phosphoribulokinase; 98.1 4.8E-06 1E-10 69.9 6.1 44 99-142 3-46 (290)
368 KOG0059|consensus 98.1 4.3E-07 9.4E-12 87.0 -0.3 68 92-159 582-672 (885)
369 TIGR01193 bacteriocin_ABC ABC- 98.1 1.2E-06 2.5E-11 82.1 2.5 47 93-139 492-538 (708)
370 PRK10789 putative multidrug tr 98.1 1.3E-06 2.9E-11 79.9 2.8 46 93-138 333-378 (569)
371 PRK11174 cysteine/glutathione 98.1 1.4E-06 3.1E-11 79.7 2.9 47 93-140 368-414 (588)
372 cd02029 PRK_like Phosphoribulo 98.1 3.7E-06 8.1E-11 70.1 5.0 40 103-142 1-40 (277)
373 TIGR03238 dnd_assoc_3 dnd syst 98.1 2.2E-06 4.9E-11 76.4 3.9 55 93-149 24-81 (504)
374 TIGR01842 type_I_sec_PrtD type 98.1 1.6E-06 3.6E-11 78.7 3.0 47 93-139 336-382 (544)
375 cd02027 APSK Adenosine 5'-phos 98.1 2.7E-06 5.7E-11 64.8 3.7 40 103-142 1-40 (149)
376 PRK10790 putative multidrug tr 98.1 1.4E-06 3E-11 79.9 2.4 47 93-139 359-405 (592)
377 PRK06762 hypothetical protein; 98.1 2.8E-06 6E-11 65.3 3.8 38 101-141 2-39 (166)
378 PLN03073 ABC transporter F fam 98.1 1.4E-06 3E-11 81.9 2.4 42 92-133 526-567 (718)
379 cd01120 RecA-like_NTPases RecA 98.1 6.9E-06 1.5E-10 61.5 5.8 42 103-144 1-42 (165)
380 TIGR02203 MsbA_lipidA lipid A 98.1 2.1E-06 4.6E-11 78.2 3.4 47 93-139 350-396 (571)
381 COG0572 Udk Uridine kinase [Nu 98.1 3.8E-06 8.2E-11 67.9 4.5 42 99-142 6-47 (218)
382 COG4618 ArpD ABC-type protease 98.1 2.8E-06 6E-11 75.9 3.9 50 93-142 354-403 (580)
383 TIGR03375 type_I_sec_LssB type 98.1 1.7E-06 3.6E-11 80.9 2.5 47 93-139 483-529 (694)
384 PRK13409 putative ATPase RIL; 98.1 2E-06 4.3E-11 79.2 2.9 37 97-133 95-131 (590)
385 TIGR01192 chvA glucan exporter 98.1 1.9E-06 4E-11 79.2 2.7 47 93-139 353-399 (585)
386 TIGR02204 MsbA_rel ABC transpo 98.1 2.2E-06 4.7E-11 78.2 3.1 47 92-138 357-403 (576)
387 PTZ00301 uridine kinase; Provi 98.1 6.9E-06 1.5E-10 66.3 5.5 41 101-141 3-45 (210)
388 KOG0635|consensus 98.1 7.1E-06 1.5E-10 62.9 5.2 47 97-143 27-73 (207)
389 PRK14257 phosphate ABC transpo 98.1 1.9E-06 4.2E-11 73.9 2.4 49 91-139 98-151 (329)
390 KOG2878|consensus 98.1 6.5E-06 1.4E-10 65.9 5.1 53 101-153 31-86 (282)
391 PRK13657 cyclic beta-1,2-gluca 98.1 2.2E-06 4.8E-11 78.5 2.8 47 93-139 353-399 (588)
392 COG4167 SapF ABC-type antimicr 98.1 2.3E-06 4.9E-11 67.8 2.5 49 91-139 29-77 (267)
393 PRK08533 flagellar accessory p 98.1 1.2E-05 2.7E-10 65.5 6.8 50 99-148 22-71 (230)
394 PRK13409 putative ATPase RIL; 98.0 2.1E-06 4.6E-11 79.0 2.5 40 95-134 359-398 (590)
395 cd01130 VirB11-like_ATPase Typ 98.0 4.3E-06 9.3E-11 65.8 3.8 36 99-134 23-58 (186)
396 TIGR00101 ureG urease accessor 98.0 1.1E-05 2.4E-10 64.4 6.1 45 101-146 1-45 (199)
397 PF03205 MobB: Molybdopterin g 98.0 8.9E-06 1.9E-10 61.5 5.2 37 103-139 2-39 (140)
398 PRK14494 putative molybdopteri 98.0 5.2E-06 1.1E-10 67.8 4.1 35 102-136 2-36 (229)
399 COG4615 PvdE ABC-type sideroph 98.0 6E-06 1.3E-10 72.0 4.5 47 93-139 341-387 (546)
400 cd02019 NK Nucleoside/nucleoti 98.0 9.4E-06 2E-10 53.8 4.5 33 103-137 1-33 (69)
401 TIGR03574 selen_PSTK L-seryl-t 98.0 4.8E-06 1E-10 68.4 3.8 40 103-142 1-40 (249)
402 cd01983 Fer4_NifH The Fer4_Nif 98.0 1.2E-05 2.7E-10 54.9 5.3 34 103-136 1-34 (99)
403 PRK09183 transposase/IS protei 98.0 1.3E-05 2.8E-10 66.6 6.2 41 98-138 99-139 (259)
404 TIGR01846 type_I_sec_HlyB type 98.0 3.5E-06 7.5E-11 78.8 3.0 47 93-139 475-521 (694)
405 PRK05537 bifunctional sulfate 98.0 1.5E-05 3.3E-10 73.1 7.0 63 73-142 371-434 (568)
406 TIGR01257 rim_protein retinal- 98.0 2.5E-06 5.4E-11 87.5 2.0 48 92-139 1956-2003(2272)
407 COG4138 BtuD ABC-type cobalami 98.0 8.1E-06 1.8E-10 64.3 4.4 50 93-143 17-66 (248)
408 PF03029 ATP_bind_1: Conserved 98.0 6.3E-06 1.4E-10 67.7 4.0 34 106-139 1-34 (238)
409 PF13245 AAA_19: Part of AAA d 98.0 2.7E-05 5.9E-10 52.8 6.5 46 101-149 10-59 (76)
410 TIGR00073 hypB hydrogenase acc 98.0 1.5E-05 3.3E-10 63.7 6.1 50 99-149 20-69 (207)
411 TIGR02322 phosphon_PhnN phosph 98.0 8.8E-06 1.9E-10 63.2 4.5 28 101-128 1-28 (179)
412 COG0488 Uup ATPase components 98.0 5.3E-06 1.1E-10 75.4 3.7 39 92-130 339-377 (530)
413 PRK13768 GTPase; Provisional 98.0 1.2E-05 2.7E-10 66.4 5.6 40 101-140 2-41 (253)
414 cd03116 MobB Molybdenum is an 98.0 1.5E-05 3.2E-10 61.6 5.6 39 102-140 2-40 (159)
415 COG0488 Uup ATPase components 98.0 4.1E-06 9E-11 76.0 2.9 41 92-132 20-60 (530)
416 PF13671 AAA_33: AAA domain; P 98.0 4.1E-06 8.8E-11 62.3 2.4 34 103-141 1-34 (143)
417 KOG2355|consensus 98.0 4.9E-06 1.1E-10 67.0 3.0 55 88-142 27-81 (291)
418 COG1072 CoaA Panthothenate kin 98.0 7.9E-05 1.7E-09 62.1 10.1 89 39-142 35-125 (283)
419 cd02042 ParA ParA and ParB of 98.0 2.1E-05 4.5E-10 55.7 5.9 38 103-140 1-39 (104)
420 PRK08233 hypothetical protein; 98.0 6.6E-06 1.4E-10 63.7 3.6 26 101-126 3-28 (182)
421 cd03278 ABC_SMC_barmotin Barmo 98.0 6.7E-06 1.4E-10 65.5 3.7 32 94-126 16-47 (197)
422 PLN03073 ABC transporter F fam 98.0 3.8E-06 8.2E-11 79.0 2.5 44 94-137 196-242 (718)
423 TIGR03878 thermo_KaiC_2 KaiC d 98.0 2.8E-05 6E-10 64.5 7.3 60 99-158 34-93 (259)
424 PF06414 Zeta_toxin: Zeta toxi 98.0 8.7E-06 1.9E-10 64.7 4.2 44 97-142 11-54 (199)
425 cd01672 TMPK Thymidine monopho 98.0 1.3E-05 2.8E-10 62.5 5.1 35 103-137 2-36 (200)
426 cd02117 NifH_like This family 98.0 1.4E-05 2.9E-10 64.1 5.2 40 102-141 1-40 (212)
427 TIGR00954 3a01203 Peroxysomal 97.9 4.2E-06 9.1E-11 78.0 2.5 41 92-132 469-509 (659)
428 COG0444 DppD ABC-type dipeptid 97.9 6.1E-06 1.3E-10 69.9 3.3 55 91-145 21-80 (316)
429 KOG0057|consensus 97.9 7E-06 1.5E-10 73.8 3.7 50 92-142 369-418 (591)
430 COG1763 MobB Molybdopterin-gua 97.9 1.4E-05 2.9E-10 62.0 4.9 37 101-137 2-38 (161)
431 PTZ00265 multidrug resistance 97.9 7.8E-06 1.7E-10 82.1 4.5 45 92-136 402-446 (1466)
432 KOG2004|consensus 97.9 7E-05 1.5E-09 69.5 10.1 38 99-136 436-473 (906)
433 COG2074 2-phosphoglycerate kin 97.9 2.7E-05 5.8E-10 64.2 6.6 100 35-141 20-125 (299)
434 PLN03211 ABC transporter G-25; 97.9 3.1E-06 6.8E-11 78.8 1.4 46 92-137 85-132 (659)
435 cd02040 NifH NifH gene encodes 97.9 1.5E-05 3.2E-10 65.7 5.3 39 102-140 2-40 (270)
436 COG4988 CydD ABC-type transpor 97.9 9.2E-06 2E-10 73.5 4.2 49 91-139 337-385 (559)
437 COG4987 CydC ABC-type transpor 97.9 7.6E-06 1.6E-10 73.5 3.5 49 92-140 355-403 (573)
438 TIGR02237 recomb_radB DNA repa 97.9 3.9E-05 8.4E-10 61.1 7.3 44 99-142 10-53 (209)
439 PRK10535 macrolide transporter 97.9 5.9E-06 1.3E-10 76.8 3.0 51 92-142 25-75 (648)
440 KOG0056|consensus 97.9 1.6E-05 3.5E-10 71.1 5.5 48 92-139 555-602 (790)
441 cd00009 AAA The AAA+ (ATPases 97.9 2.5E-05 5.3E-10 56.9 5.6 43 100-142 18-60 (151)
442 PRK14493 putative bifunctional 97.9 1.6E-05 3.5E-10 66.6 5.1 38 102-140 2-39 (274)
443 PF13555 AAA_29: P-loop contai 97.9 1.6E-05 3.4E-10 51.9 3.8 27 101-127 23-49 (62)
444 TIGR01257 rim_protein retinal- 97.9 4.1E-06 9E-11 86.0 1.7 48 92-139 947-994 (2272)
445 PLN03232 ABC transporter C fam 97.9 6.9E-06 1.5E-10 82.7 3.1 52 92-143 1253-1304(1495)
446 PRK10463 hydrogenase nickel in 97.9 2E-05 4.4E-10 66.4 5.4 61 98-163 101-161 (290)
447 COG0563 Adk Adenylate kinase a 97.9 9.2E-06 2E-10 63.9 3.1 38 103-144 2-39 (178)
448 PRK13230 nitrogenase reductase 97.9 2E-05 4.3E-10 65.7 5.2 39 102-140 2-40 (279)
449 PRK09361 radB DNA repair and r 97.9 4.8E-05 1E-09 61.3 7.3 44 99-142 21-64 (225)
450 cd02034 CooC The accessory pro 97.9 2.7E-05 5.8E-10 57.1 5.2 36 104-139 2-37 (116)
451 KOG0055|consensus 97.9 1E-05 2.2E-10 78.6 3.7 48 94-141 372-419 (1228)
452 TIGR03575 selen_PSTK_euk L-ser 97.9 1.7E-05 3.6E-10 68.4 4.5 39 103-141 1-40 (340)
453 COG4148 ModC ABC-type molybdat 97.9 7.5E-06 1.6E-10 68.6 2.2 47 94-140 17-63 (352)
454 PLN02348 phosphoribulokinase 97.9 2.7E-05 5.9E-10 68.1 5.8 43 99-141 47-104 (395)
455 PLN03130 ABC transporter C fam 97.9 9.1E-06 2E-10 82.4 3.2 52 92-143 1256-1307(1622)
456 PRK09825 idnK D-gluconate kina 97.9 1.8E-05 3.9E-10 62.0 4.2 36 101-141 3-38 (176)
457 cd03272 ABC_SMC3_euk Eukaryoti 97.9 1.2E-05 2.6E-10 65.4 3.4 25 101-125 23-47 (243)
458 TIGR01287 nifH nitrogenase iro 97.9 2.3E-05 5E-10 65.1 5.1 38 103-140 2-39 (275)
459 cd03274 ABC_SMC4_euk Eukaryoti 97.9 1.3E-05 2.7E-10 64.7 3.4 24 102-125 26-49 (212)
460 PF07015 VirC1: VirC1 protein; 97.9 6.8E-05 1.5E-09 61.2 7.6 41 103-143 4-44 (231)
461 cd01394 radB RadB. The archaea 97.8 5.5E-05 1.2E-09 60.6 7.1 41 99-139 17-57 (218)
462 PTZ00243 ABC transporter; Prov 97.8 8.7E-06 1.9E-10 82.3 2.9 52 92-143 1327-1378(1560)
463 COG4598 HisP ABC-type histidin 97.8 8.6E-06 1.9E-10 64.4 2.2 66 92-157 23-97 (256)
464 PRK10078 ribose 1,5-bisphospho 97.8 1.3E-05 2.8E-10 63.0 3.3 26 101-126 2-27 (186)
465 cd02021 GntK Gluconate kinase 97.8 1.6E-05 3.6E-10 59.9 3.6 36 103-143 1-36 (150)
466 cd03270 ABC_UvrA_I The excisio 97.8 1.2E-05 2.5E-10 65.3 2.9 27 92-118 12-38 (226)
467 TIGR03015 pepcterm_ATPase puta 97.8 4.6E-05 1E-09 62.7 6.5 56 101-158 43-98 (269)
468 TIGR03881 KaiC_arch_4 KaiC dom 97.8 5.7E-05 1.2E-09 61.0 7.0 56 99-158 18-73 (229)
469 COG4778 PhnL ABC-type phosphon 97.8 1.8E-05 3.8E-10 62.1 3.8 49 91-139 27-75 (235)
470 TIGR00041 DTMP_kinase thymidyl 97.8 6.7E-05 1.5E-09 58.9 7.2 38 101-138 3-40 (195)
471 cd02032 Bchl_like This family 97.8 2.9E-05 6.3E-10 64.3 5.3 37 103-139 2-38 (267)
472 PRK13185 chlL protochlorophyll 97.8 3.3E-05 7.3E-10 63.9 5.6 40 101-140 2-41 (270)
473 PRK00300 gmk guanylate kinase; 97.8 1.5E-05 3.3E-10 63.2 3.3 28 99-126 3-30 (205)
474 cd02033 BchX Chlorophyllide re 97.8 4.2E-05 9E-10 65.7 6.2 45 97-141 27-71 (329)
475 cd02026 PRK Phosphoribulokinas 97.8 2.4E-05 5.2E-10 65.5 4.5 36 103-140 1-36 (273)
476 COG1618 Predicted nucleotide k 97.8 3.2E-05 6.9E-10 59.8 4.7 33 101-133 5-37 (179)
477 PRK13232 nifH nitrogenase redu 97.8 3.1E-05 6.8E-10 64.3 5.1 40 102-141 2-41 (273)
478 PF13401 AAA_22: AAA domain; P 97.8 3.7E-05 7.9E-10 56.2 4.9 59 100-159 3-66 (131)
479 TIGR01281 DPOR_bchL light-inde 97.8 3.4E-05 7.3E-10 63.8 5.2 38 103-140 2-39 (268)
480 COG1102 Cmk Cytidylate kinase 97.8 1.9E-05 4.2E-10 61.0 3.4 39 103-145 2-40 (179)
481 PRK13235 nifH nitrogenase redu 97.8 3.5E-05 7.7E-10 64.1 5.2 39 102-140 2-40 (274)
482 TIGR00957 MRP_assoc_pro multi 97.8 1.4E-05 3E-10 80.8 3.2 51 93-143 1304-1354(1522)
483 TIGR01360 aden_kin_iso1 adenyl 97.8 2.2E-05 4.9E-10 61.0 3.7 25 101-125 3-27 (188)
484 PLN02200 adenylate kinase fami 97.8 3.1E-05 6.6E-10 63.4 4.5 43 96-142 38-80 (234)
485 cd01124 KaiC KaiC is a circadi 97.8 5.8E-05 1.2E-09 58.6 5.8 38 103-140 1-38 (187)
486 PRK14490 putative bifunctional 97.8 4.8E-05 1E-09 66.2 5.8 38 100-138 4-41 (369)
487 cd01131 PilT Pilus retraction 97.8 4.6E-05 1E-09 60.6 5.2 33 103-135 3-36 (198)
488 KOG0055|consensus 97.8 3.4E-05 7.3E-10 75.2 5.0 50 93-142 1008-1057(1228)
489 TIGR03263 guanyl_kin guanylate 97.7 1.8E-05 3.9E-10 61.4 2.6 26 101-126 1-26 (180)
490 COG1123 ATPase components of v 97.7 1.9E-05 4.2E-10 71.4 3.1 64 91-154 25-92 (539)
491 PLN03140 ABC transporter G fam 97.7 1.3E-05 2.8E-10 80.6 2.1 45 92-136 182-229 (1470)
492 cd03283 ABC_MutS-like MutS-lik 97.7 2.5E-05 5.4E-10 62.3 3.4 26 100-125 24-49 (199)
493 PRK06547 hypothetical protein; 97.7 3.4E-05 7.4E-10 60.3 4.0 39 99-142 13-51 (172)
494 PRK13234 nifH nitrogenase redu 97.7 5.1E-05 1.1E-09 64.1 5.4 39 102-140 5-43 (295)
495 TIGR02016 BchX chlorophyllide 97.7 4.9E-05 1.1E-09 64.3 5.3 38 102-139 1-38 (296)
496 PRK06067 flagellar accessory p 97.7 8.3E-05 1.8E-09 60.4 6.4 41 99-139 23-63 (234)
497 cd00227 CPT Chloramphenicol (C 97.7 2.6E-05 5.6E-10 60.6 3.2 38 101-141 2-39 (175)
498 TIGR01313 therm_gnt_kin carboh 97.7 2.6E-05 5.6E-10 59.6 3.1 33 104-141 1-33 (163)
499 PRK10787 DNA-binding ATP-depen 97.7 0.00022 4.8E-09 67.8 9.9 94 31-128 250-376 (784)
500 cd03280 ABC_MutS2 MutS2 homolo 97.7 2.8E-05 6E-10 61.9 3.3 30 93-122 19-49 (200)
No 1
>KOG0780|consensus
Probab=100.00 E-value=6.3e-36 Score=253.69 Aligned_cols=185 Identities=64% Similarity=0.993 Sum_probs=176.9
Q ss_pred CchHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHH
Q psy4311 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVY 80 (190)
Q Consensus 1 m~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 80 (190)
|+|++||.+|+++|+.++..+.++++.++.+|+||+.+|+++||++.++.++.+++++.+..++...+.++++.|+.+++
T Consensus 1 mvla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf 80 (483)
T KOG0780|consen 1 MVLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVF 80 (483)
T ss_pred CchHHhchhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCcee
Q psy4311 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFY 160 (190)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~ 160 (190)
++|+++++|....+.+...+|.||.|+|.+|+||||+|.++|.+|+++|++++++++|+||++|.+||+.+|.+.+||+|
T Consensus 81 ~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 81 DELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred HHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcc-----------cccCceeeCCCCccc
Q psy4311 161 GSSKGKRNPI-----------HNMGLSLIPTYEKSF 185 (190)
Q Consensus 161 ~~~~~~~~~l-----------~~~~lvlid~~~r~~ 185 (190)
..+...++.- +.+|+|++||.||+.
T Consensus 161 gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~ 196 (483)
T KOG0780|consen 161 GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHK 196 (483)
T ss_pred ecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchh
Confidence 9988888641 348999999999974
No 2
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-35 Score=254.43 Aligned_cols=184 Identities=37% Similarity=0.514 Sum_probs=168.7
Q ss_pred chHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
||++|++++++.++++.++..++|+++++.+.|++.+|+++||+..++.+++++++++...+++..+.+|.+.+..++++
T Consensus 1 m~e~L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceee
Q psy4311 82 ELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161 (190)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~ 161 (190)
+|+++++.....+++..++|.+|.++|..|||||||+++||.+|++++++|.++++|+||++|++||+++++..++|++.
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 99999997555666667789999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCc------c-----cccCceeeCCCCccc
Q psy4311 162 SSKGKRNP------I-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 162 ~~~~~~~~------l-----~~~~lvlid~~~r~~ 185 (190)
.....++. + +.+|++++||+||..
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ 195 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH 195 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 74333321 1 126899999999975
No 3
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=4.5e-33 Score=243.49 Aligned_cols=184 Identities=70% Similarity=1.063 Sum_probs=166.0
Q ss_pred chHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
+|++|+++|.++++++.+++.++|+++++++++++.+|+++||+..++++|++++++...++++..+.++.+.+...+++
T Consensus 1 ~l~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 1 VLADLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred ChhHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999998877777788888899999999
Q ss_pred HHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceee
Q psy4311 82 ELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161 (190)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~ 161 (190)
+|.+++++...++.+...+|.+++++|++|||||||+++||.++..+|++|.++++|+||++|++||+.++++.++|++.
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 99999987666676666678999999999999999999999999988999999999999999999999999999999986
Q ss_pred cCCCCCC------cc-----cccCceeeCCCCccc
Q psy4311 162 SSKGKRN------PI-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 162 ~~~~~~~------~l-----~~~~lvlid~~~r~~ 185 (190)
.....++ .+ +.+|+|++||+||..
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 161 SYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHK 195 (429)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 5543332 11 247999999999974
No 4
>PRK10867 signal recognition particle protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=228.52 Aligned_cols=184 Identities=30% Similarity=0.434 Sum_probs=161.7
Q ss_pred chHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
||++|++++.++++++.+++.++++.+++.+++++.+|+++||+.+++++|++++++....+++..+.++.+.+...+++
T Consensus 1 mf~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (433)
T PRK10867 1 MFESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVND 80 (433)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999988777766667777888899999
Q ss_pred HHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEeccCCChhHHHHHHHHhhhcCCcee
Q psy4311 82 ELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCADTFRAGAYDQLKQNATKARIPFY 160 (190)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~ 160 (190)
++.+++++...++.+..++|.+++++||+||||||++.+||.++..+ |.+|.++++|+||+++.+||+.|++..++|++
T Consensus 81 el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 81 ELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred HHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 99999987555566655678999999999999999999999999888 89999999999999999999999999999988
Q ss_pred ecCCCCCC------cc-----cccCceeeCCCCccc
Q psy4311 161 GSSKGKRN------PI-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 161 ~~~~~~~~------~l-----~~~~lvlid~~~r~~ 185 (190)
......++ .+ ..+|+|++||+||..
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Confidence 65432221 11 236899999999864
No 5
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.97 E-value=2.3e-29 Score=220.89 Aligned_cols=183 Identities=32% Similarity=0.470 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHH
Q psy4311 3 LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKE 82 (190)
Q Consensus 3 ~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 82 (190)
|++|+++|.++++++.+++.++++++++.+++++.+|+++||+.++++++++++++.+..++...+.++.+.+...++++
T Consensus 1 ~~~L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 80 (428)
T TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (428)
T ss_pred CchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999887776666677777888999999
Q ss_pred HHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-hcCCcEEEEeccCCChhHHHHHHHHhhhcCCceee
Q psy4311 83 LIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161 (190)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~ 161 (190)
|.+++++....+.+...+|.+++++|++|+||||++.+||.++. ..|.+|.++++|+||+++.+||+.++++.++|++.
T Consensus 81 L~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 81 LVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred HHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 99999875445555556789999999999999999999999986 57889999999999999999999999999999887
Q ss_pred cCCCCCC------cc-----cccCceeeCCCCccc
Q psy4311 162 SSKGKRN------PI-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 162 ~~~~~~~------~l-----~~~~lvlid~~~r~~ 185 (190)
.....++ .+ +.+|+|++||.||..
T Consensus 161 ~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 5532222 11 236889999999864
No 6
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.3e-29 Score=212.87 Aligned_cols=158 Identities=28% Similarity=0.445 Sum_probs=130.0
Q ss_pred CHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhh-hhhccccchhhHHHHHHHHHHHHHHhhcCCCCc----ccCCCC
Q psy4311 24 NEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQV-IDFDEMASGLNKRRMIQSSVYKELIKLVDPGVK----AHQPQK 98 (190)
Q Consensus 24 ~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~----~~~~~~ 98 (190)
.++..+++++++++.|+++||+.+++++|++.+++. .....+.+ .+.+++.+.+.+.+++.+... ......
T Consensus 61 ~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~----~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~ 136 (340)
T COG0552 61 KEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKD----EETVKEALREALIEILRPVDKVDLPLEIPKE 136 (340)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCC----HHHHHHHHHHHHHHHhcccccccchhhhccC
Confidence 445566788999999999999999999999999984 44433322 456788888888888886322 122234
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCc-c-------
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP-I------- 170 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~-l------- 170 (190)
++|.+++|+|.||+|||||++|||.+|+.+|++|.+.++||||++|+|||+.|+++.|++++......|++ +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999998855666654 1
Q ss_pred ---cccCceeeCCCCccc
Q psy4311 171 ---HNMGLSLIPTYEKSF 185 (190)
Q Consensus 171 ---~~~~lvlid~~~r~~ 185 (190)
+..|++++||+||-+
T Consensus 217 Akar~~DvvliDTAGRLh 234 (340)
T COG0552 217 AKARGIDVVLIDTAGRLH 234 (340)
T ss_pred HHHcCCCEEEEeCccccc
Confidence 237899999999853
No 7
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.96 E-value=1.8e-28 Score=215.73 Aligned_cols=179 Identities=41% Similarity=0.595 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHh
Q psy4311 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIK 85 (190)
Q Consensus 6 l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 85 (190)
|+++|.++|+++.+++.++++++++++++++.+|+++||+.++++++++++++....+++....++.+.+...+++++.+
T Consensus 1 l~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998887777767777877888899999999
Q ss_pred hcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCC
Q psy4311 86 LVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKG 165 (190)
Q Consensus 86 ~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~ 165 (190)
++++....+... .+|.+++++|++|+||||++++||.++...|++|.++++|+||+++.+||+.+++..++|++.....
T Consensus 81 ~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~ 159 (437)
T PRK00771 81 LLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159 (437)
T ss_pred HhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc
Confidence 998754443333 5688999999999999999999999999889999999999999999999999999999998765322
Q ss_pred CCC------c---ccccCceeeCCCCccc
Q psy4311 166 KRN------P---IHNMGLSLIPTYEKSF 185 (190)
Q Consensus 166 ~~~------~---l~~~~lvlid~~~r~~ 185 (190)
.++ . ....|+|++||+||..
T Consensus 160 ~d~~~i~~~al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 160 KDAVEIAKEGLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred cCHHHHHHHHHHHhhcCCEEEEECCCccc
Confidence 221 1 1235899999999975
No 8
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.95 E-value=9e-27 Score=198.01 Aligned_cols=175 Identities=27% Similarity=0.418 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHH
Q psy4311 3 LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKE 82 (190)
Q Consensus 3 ~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 82 (190)
|.+..+.+.+.+.++.+++.+|++. ++++++.|+++||+++++++|++++++.+..++.. ..+.++..+.++
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~~----~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~----~~~~~~~~l~~~ 95 (318)
T PRK10416 24 LSKTRENFGEGINGLFAKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKRKNLK----DPEELKELLKEE 95 (318)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHH
Confidence 4455577777888888877788864 58999999999999999999999999876554332 234577788889
Q ss_pred HHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeec
Q psy4311 83 LIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162 (190)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~ 162 (190)
+.+.+.+...++.....+|.+++|+||||+|||||+++||.++.+.+++|.++++|+||+++.+|++.|+.+.++|+..+
T Consensus 96 l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 96 LAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred HHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 99988754444444446789999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCc-----------ccccCceeeCCCCccc
Q psy4311 163 SKGKRNP-----------IHNMGLSLIPTYEKSF 185 (190)
Q Consensus 163 ~~~~~~~-----------l~~~~lvlid~~~r~~ 185 (190)
....+++ .+.+|+|++||+||.+
T Consensus 176 ~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 176 KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 4443331 2347999999999975
No 9
>KOG0781|consensus
Probab=99.95 E-value=4.6e-27 Score=203.98 Aligned_cols=179 Identities=24% Similarity=0.432 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhh
Q psy4311 7 GRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKL 86 (190)
Q Consensus 7 ~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 86 (190)
...+.++|+++.|++.++++++.+++++++++|+...|..+.|++||+.+...+.++.+..+......+++++.+.|+++
T Consensus 277 ~g~aFg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQI 356 (587)
T KOG0781|consen 277 VGGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQI 356 (587)
T ss_pred hhhHHHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999888888877777888999999999999
Q ss_pred cCCCCc-----cc--CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhc----
Q psy4311 87 VDPGVK-----AH--QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKA---- 155 (190)
Q Consensus 87 l~~~~~-----~~--~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~---- 155 (190)
+.|... ++ ....++|.+|.|+|.||+||||.+++||.||..++++|.+.+||+||++|+|||+++.+++
T Consensus 357 LTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~ 436 (587)
T KOG0781|consen 357 LTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALH 436 (587)
T ss_pred cCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhc
Confidence 988431 11 1234579999999999999999999999999999999999999999999999999999987
Q ss_pred --CCceeecCCCCCCc------c-----cccCceeeCCCCccc
Q psy4311 156 --RIPFYGSSKGKRNP------I-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 156 --~i~~~~~~~~~~~~------l-----~~~~lvlid~~~r~~ 185 (190)
-|+++.....-+.+ + +.+|+|+|||+||.+
T Consensus 437 ~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~ 479 (587)
T KOG0781|consen 437 GTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMH 479 (587)
T ss_pred cchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 36665544433322 1 238999999999964
No 10
>PRK14974 cell division protein FtsY; Provisional
Probab=99.95 E-value=4.9e-26 Score=194.48 Aligned_cols=162 Identities=29% Similarity=0.499 Sum_probs=136.3
Q ss_pred cCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCC-----C
Q psy4311 23 INEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQP-----Q 97 (190)
Q Consensus 23 i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~-----~ 97 (190)
++++++++++++++..|+++||+.+++++|++++++.+..+++..+.+..+.++..+.+.+.+++++.. .+.+ .
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~ 136 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKS 136 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhc
Confidence 788999999999999999999999999999999999887766666666677788899999999887542 1111 2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCc--------
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP-------- 169 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~-------- 169 (190)
..+|.+++|+||||+||||++++||.++...+++|.++++|+||.++.+|++.+++..|+|++......++.
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 345789999999999999999999999998899999999999999999999999999999987655443321
Q ss_pred ---ccccCceeeCCCCccc
Q psy4311 170 ---IHNMGLSLIPTYEKSF 185 (190)
Q Consensus 170 ---l~~~~lvlid~~~r~~ 185 (190)
....|+|+|||.||..
T Consensus 217 ~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHhCCCCEEEEECCCccC
Confidence 1236889999999874
No 11
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.92 E-value=8.1e-24 Score=176.51 Aligned_cols=154 Identities=28% Similarity=0.394 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEE
Q psy4311 28 LNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFV 107 (190)
Q Consensus 28 ~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~ 107 (190)
+++++++++..|+++||+++++++|++++++.....+... ...+...+.+.+.+.+.+....+.....++.+++|+
T Consensus 3 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~ 78 (272)
T TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKD----AELLKEILKEYLKEILKETDLELIVEENKPNVILFV 78 (272)
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEE
Confidence 3467899999999999999999999999998766544432 234566677777777765323344445668899999
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCc-----------ccccCce
Q psy4311 108 GLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP-----------IHNMGLS 176 (190)
Q Consensus 108 G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~-----------l~~~~lv 176 (190)
||+|+||||++++||.++...|++|.++++|+||.++.+|++.|+++.+++++......++. .+.+|++
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~V 158 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVV 158 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999998899999999999999999999999999999887544333221 1347999
Q ss_pred eeCCCCccc
Q psy4311 177 LIPTYEKSF 185 (190)
Q Consensus 177 lid~~~r~~ 185 (190)
++|+.||..
T Consensus 159 iIDT~G~~~ 167 (272)
T TIGR00064 159 LIDTAGRLQ 167 (272)
T ss_pred EEeCCCCCc
Confidence 999999974
No 12
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.88 E-value=2e-21 Score=172.55 Aligned_cols=168 Identities=24% Similarity=0.299 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHH
Q psy4311 4 ADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKEL 83 (190)
Q Consensus 4 ~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 83 (190)
+++.+.|.+.+.++..... ....+..+++++.|+++||+..++++|++.++.....+ ....+++..+.+.
T Consensus 173 ~~lr~~l~~~~~~l~~~~~---~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~------~~~~~l~~~l~~~- 242 (484)
T PRK06995 173 RSLRGMLEEQLASLAWGER---QRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDAE------AALDWVQSALAKN- 242 (484)
T ss_pred HHHHHHHHHHHHHHhcccc---ccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhchh------HHHHHHHHHHHHH-
Confidence 3445555555555542111 11235678999999999999999999999997653222 1122333333222
Q ss_pred HhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-cC-CcEEEEeccCCChhHHHHHHHHhhhcCCceee
Q psy4311 84 IKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KN-WKACLVCADTFRAGAYDQLKQNATKARIPFYG 161 (190)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~-~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~ 161 (190)
+..+.. .....++|.+++|+||||||||||+++|+.++.. .| .+|.++++|+||.+++|||+.|++.+|+++..
T Consensus 243 l~~~~~----~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 243 LPVLDS----EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA 318 (484)
T ss_pred HhhccC----ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec
Confidence 222221 2222345789999999999999999999999854 44 48999999999999999999999999999876
Q ss_pred cCCCCCC-----cccccCceeeCCCCccc
Q psy4311 162 SSKGKRN-----PIHNMGLSLIPTYEKSF 185 (190)
Q Consensus 162 ~~~~~~~-----~l~~~~lvlid~~~r~~ 185 (190)
.....+. .+...++++||+.|++.
T Consensus 319 ~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 319 VKDAADLRLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred cCCchhHHHHHHhccCCCeEEeCCCCcCh
Confidence 5544332 23446889999999874
No 13
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.88 E-value=2.8e-21 Score=167.98 Aligned_cols=150 Identities=25% Similarity=0.292 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEcc
Q psy4311 30 SMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGL 109 (190)
Q Consensus 30 ~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~ 109 (190)
+.++++++.|+++||++.++++|++.+++....+.... ...+.+.+.+.+.+.+.... ++ .....|.+++++||
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~v~~~l~~~l~~~i~~~~-~~-~~~~~~~vi~lvGp 182 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDD----YDKVRDSVIIYIAKTIKCSG-SI-IDNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCC----HHHHHHHHHHHHHHHhhccC-cc-ccCCCCeEEEEECC
Confidence 45789999999999999999999999987754433322 22345555555655554211 11 22245789999999
Q ss_pred CCCChhHHHHHHHHHHHh----cCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----CcccccCceeeCC
Q psy4311 110 QGSGKTTTCTKLAYHYLK----KNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHNMGLSLIPT 180 (190)
Q Consensus 110 ~G~GKTT~~~~la~~~~~----~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~~~lvlid~ 180 (190)
||+|||||+++||.++.. .+.+|.++++|+||+++.+||+.|++..|+|+.......+ ..+..+|+|++|+
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDT 262 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDT 262 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcC
Confidence 999999999999998863 4789999999999999999999999999999876443211 1234589999999
Q ss_pred CCccc
Q psy4311 181 YEKSF 185 (190)
Q Consensus 181 ~~r~~ 185 (190)
.||+.
T Consensus 263 aGr~~ 267 (388)
T PRK12723 263 IGKSP 267 (388)
T ss_pred CCCCc
Confidence 99975
No 14
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.87 E-value=2.9e-21 Score=178.51 Aligned_cols=146 Identities=24% Similarity=0.284 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEc
Q psy4311 29 NSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVG 108 (190)
Q Consensus 29 ~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G 108 (190)
+++.+++++.|+++||+..++++|++.+.+.... . .+...+.++|.+.+.. ....++..+++.+++|+|
T Consensus 124 ~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~---------~-~~~~~l~~~L~~~l~i-l~~~~~~~~~g~Vi~lVG 192 (767)
T PRK14723 124 DPLRASLFRWLLGAGFSGQLARALLERLPVGYDR---------P-AAMAWIRNELATHLPV-LRDEDALLAQGGVLALVG 192 (767)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCH---------H-HHHHHHHHHHHHHhhh-ccCCCcccCCCeEEEEEC
Confidence 3456889999999999999999999998654211 1 2344556666655432 112223334578999999
Q ss_pred cCCCChhHHHHHHHHHHH-hcC-CcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----CcccccCceeeCCC
Q psy4311 109 LQGSGKTTTCTKLAYHYL-KKN-WKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHNMGLSLIPTY 181 (190)
Q Consensus 109 ~~G~GKTT~~~~la~~~~-~~~-~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~~~lvlid~~ 181 (190)
|||||||||+++|+.++. ..| .+|.++++|+||+++.+|++.|++..++|++......+ ..+..+|+|+|||.
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDTA 272 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDTV 272 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999985 455 58999999999999999999999999999876443211 12345799999999
Q ss_pred Cccc
Q psy4311 182 EKSF 185 (190)
Q Consensus 182 ~r~~ 185 (190)
||++
T Consensus 273 GRs~ 276 (767)
T PRK14723 273 GMSQ 276 (767)
T ss_pred CCCc
Confidence 9875
No 15
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.86 E-value=1.3e-20 Score=165.83 Aligned_cols=149 Identities=26% Similarity=0.289 Sum_probs=116.3
Q ss_pred HhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEE
Q psy4311 26 EVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIM 105 (190)
Q Consensus 26 ~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~ 105 (190)
...++.+.++++.|+++||+..++++|++.+......... .+...+.+.|.+.+......+ ..++.+++
T Consensus 157 ~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~~~---~~~~~~i~ 225 (424)
T PRK05703 157 ERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDI---LKQGGVVA 225 (424)
T ss_pred ccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccccc---ccCCcEEE
Confidence 4456778999999999999999999999999765433211 244566677777775433222 34467999
Q ss_pred EEccCCCChhHHHHHHHHHHH--hcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----CcccccCceee
Q psy4311 106 FVGLQGSGKTTTCTKLAYHYL--KKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHNMGLSLI 178 (190)
Q Consensus 106 l~G~~G~GKTT~~~~la~~~~--~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~~~lvli 178 (190)
|+||+|+|||||+.+||.++. ..+.+|.++++|+||.++.+||+.|++..++|+.......+ ..+..+|+|+|
T Consensus 226 ~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlI 305 (424)
T PRK05703 226 LVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILI 305 (424)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEE
Confidence 999999999999999999987 45689999999999999999999999999999876544322 11335799999
Q ss_pred CCCCccc
Q psy4311 179 PTYEKSF 185 (190)
Q Consensus 179 d~~~r~~ 185 (190)
|+.|++.
T Consensus 306 Dt~G~~~ 312 (424)
T PRK05703 306 DTAGRSQ 312 (424)
T ss_pred eCCCCCC
Confidence 9999864
No 16
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.86 E-value=1.3e-20 Score=158.00 Aligned_cols=144 Identities=28% Similarity=0.318 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEE
Q psy4311 28 LNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFV 107 (190)
Q Consensus 28 ~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~ 107 (190)
.++.++++++.|+++||+.+++++|.+.+..... ...+...+.+.|.+.+........+ ..++.+++|+
T Consensus 132 ~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~~----------~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vi~~v 200 (282)
T TIGR03499 132 RDPEGAKLLERLLRAGVSPELARELLEKLPERAD----------AEDAWRWLREALEKMLPVKPEEDEI-LEQGGVIALV 200 (282)
T ss_pred cCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccCC----------HHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEEE
Confidence 3456789999999999999999999999875311 1123455667777766522111112 2467899999
Q ss_pred ccCCCChhHHHHHHHHHHHhc-C-CcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC--C---cccccCceeeCC
Q psy4311 108 GLQGSGKTTTCTKLAYHYLKK-N-WKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR--N---PIHNMGLSLIPT 180 (190)
Q Consensus 108 G~~G~GKTT~~~~la~~~~~~-~-~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~--~---~l~~~~lvlid~ 180 (190)
||+|||||||+.+|+.++..+ | ++|.++++|+||.++.+|++.|++..++|+.......+ . .+..+|+|+||+
T Consensus 201 GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~d~vliDt 280 (282)
T TIGR03499 201 GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDKDLILIDT 280 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCCCEEEEeC
Confidence 999999999999999999875 5 89999999999999999999999999999876443211 1 123479999999
Q ss_pred CC
Q psy4311 181 YE 182 (190)
Q Consensus 181 ~~ 182 (190)
.|
T Consensus 281 ~G 282 (282)
T TIGR03499 281 AG 282 (282)
T ss_pred CC
Confidence 76
No 17
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.85 E-value=6.1e-21 Score=164.59 Aligned_cols=87 Identities=36% Similarity=0.470 Sum_probs=77.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH--hcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----Ccccc
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL--KKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHN 172 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~--~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~ 172 (190)
++.+++|+||+|+|||||++|||..+. ....+|++|+.|+||.||+|||+.||+.+|+|+.......+ ..+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 478999999999999999999999998 56689999999999999999999999999999988765444 34677
Q ss_pred cCceeeCCCCcccc
Q psy4311 173 MGLSLIPTYEKSFH 186 (190)
Q Consensus 173 ~~lvlid~~~r~~~ 186 (190)
+|+|++||.||++.
T Consensus 282 ~d~ILVDTaGrs~~ 295 (407)
T COG1419 282 CDVILVDTAGRSQY 295 (407)
T ss_pred CCEEEEeCCCCCcc
Confidence 99999999999863
No 18
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.85 E-value=2.2e-20 Score=162.96 Aligned_cols=179 Identities=23% Similarity=0.306 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHH-----HHhhcC-------CccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhh
Q psy4311 3 LADLGRKITSAL-----RSLSNA-------TVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLN 70 (190)
Q Consensus 3 ~~~l~~~i~~~~-----~~l~~~-------~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~ 70 (190)
|+.|.+..-+.+ +++.++ +.|++++..+.++++++.|+++||+..++++|++.+...........
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~--- 192 (432)
T PRK12724 116 LEEVITEPERPVGLSFEKELFEKNSFLESETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGR--- 192 (432)
T ss_pred HHHHHhhhhhhhhhhHHHHhhcccccccccccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccc---
Confidence 445555555544 444433 44688888899999999999999999999999999987654433221
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccCCC-CCCCeEEEEEccCCCChhHHHHHHHHHH-HhcCCcEEEEeccCCChhHHHHH
Q psy4311 71 KRRMIQSSVYKELIKLVDPGVKAHQPQ-KGKPNVIMFVGLQGSGKTTTCTKLAYHY-LKKNWKACLVCADTFRAGAYDQL 148 (190)
Q Consensus 71 ~~~~i~~~l~~~l~~~l~~~~~~~~~~-~~~~~vi~l~G~~G~GKTT~~~~la~~~-~~~~~~v~li~~D~~r~~a~eql 148 (190)
...+...+.+.|.+.+......+... ..++.+++|+||+||||||++.+||..+ ...|.+|.++++|+||.++.+|+
T Consensus 193 -~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQL 271 (432)
T PRK12724 193 -NHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL 271 (432)
T ss_pred -hHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHH
Confidence 12345556666666664322111111 1346799999999999999999999876 46688999999999999999999
Q ss_pred HHHhhhcCCceeecCCC--CCCcc--cccCceeeCCCCccc
Q psy4311 149 KQNATKARIPFYGSSKG--KRNPI--HNMGLSLIPTYEKSF 185 (190)
Q Consensus 149 ~~~~~~~~i~~~~~~~~--~~~~l--~~~~lvlid~~~r~~ 185 (190)
+.|++..++|+...... ....+ ..+|+|+||+.|+..
T Consensus 272 k~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~ 312 (432)
T PRK12724 272 KRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSH 312 (432)
T ss_pred HHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 99999999988653211 11112 357899999999864
No 19
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.84 E-value=3.9e-20 Score=160.07 Aligned_cols=151 Identities=17% Similarity=0.267 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEE
Q psy4311 27 VLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMF 106 (190)
Q Consensus 27 ~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l 106 (190)
..+..+..+...|+++||++.++++|.+.+..........+ . ..+...+.+.+...+.... ....++.+++|
T Consensus 175 ~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~---~-~~~~~~l~~~l~~~l~~~~----~~~~~~~vI~L 246 (436)
T PRK11889 175 SVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT---E-EEVIEYILEDMRSHFNTEN----VFEKEVQTIAL 246 (436)
T ss_pred ccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCC---H-HHHHHHHHHHHHHHhcccc----ccccCCcEEEE
Confidence 34556778999999999999999999998876433321111 1 2344455666666554321 11234689999
Q ss_pred EccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC--Ccc---c---ccCceee
Q psy4311 107 VGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR--NPI---H---NMGLSLI 178 (190)
Q Consensus 107 ~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~--~~l---~---~~~lvli 178 (190)
+|||||||||++++||..+...+.+|.++++|+||+++.+||+.|++..++|+.......+ ..+ . .+|+++|
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLI 326 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILI 326 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEE
Confidence 9999999999999999999988999999999999999999999999999999886542211 122 2 3699999
Q ss_pred CCCCccc
Q psy4311 179 PTYEKSF 185 (190)
Q Consensus 179 d~~~r~~ 185 (190)
|+.||+.
T Consensus 327 DTaGRs~ 333 (436)
T PRK11889 327 DTAGKNY 333 (436)
T ss_pred eCccccC
Confidence 9999975
No 20
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.83 E-value=1.1e-20 Score=150.76 Aligned_cols=85 Identities=41% Similarity=0.526 Sum_probs=72.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCC------cc----
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRN------PI---- 170 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~------~l---- 170 (190)
|++++|+||+|||||||++|||.++..++.+|.++++|+||.++++||+.|++..++|++......++ .+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 67999999999999999999999998889999999999999999999999999999999876644432 11
Q ss_pred -cccCceeeCCCCccc
Q psy4311 171 -HNMGLSLIPTYEKSF 185 (190)
Q Consensus 171 -~~~~lvlid~~~r~~ 185 (190)
+.+|+|+|||.||+.
T Consensus 81 ~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HTTSSEEEEEE-SSSS
T ss_pred hcCCCEEEEecCCcch
Confidence 237899999999985
No 21
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.83 E-value=1e-19 Score=156.90 Aligned_cols=146 Identities=22% Similarity=0.272 Sum_probs=110.1
Q ss_pred HHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEccCCC
Q psy4311 33 KEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGS 112 (190)
Q Consensus 33 ~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~ 112 (190)
.|+.+.|.+.||+..++..|.+.+...+....... ...+...+.+.+...+... .. +...++++++|+||+|+
T Consensus 145 ~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~L~~~l~~~-~~--~~~~~~~ii~lvGptGv 217 (407)
T PRK12726 145 SDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAH----LDDITDWFVPYLSGKLAVE-DS--FDLSNHRIISLIGQTGV 217 (407)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc----HHHHHHHHHHHhcCcEeeC-CC--ceecCCeEEEEECCCCC
Confidence 48899999999999999999999976643322111 1234444444444444322 12 23456889999999999
Q ss_pred ChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC--Cc---c---cccCceeeCCCCcc
Q psy4311 113 GKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR--NP---I---HNMGLSLIPTYEKS 184 (190)
Q Consensus 113 GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~--~~---l---~~~~lvlid~~~r~ 184 (190)
||||++.+||.++..++.+|.++++|+||+++.+||+.|++..++|++......+ .. + ..+|+|+|||.||+
T Consensus 218 GKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 218 GKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 9999999999999888999999999999999999999999999999875432211 11 1 24799999999997
Q ss_pred c
Q psy4311 185 F 185 (190)
Q Consensus 185 ~ 185 (190)
+
T Consensus 298 ~ 298 (407)
T PRK12726 298 Y 298 (407)
T ss_pred c
Confidence 5
No 22
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.82 E-value=4.7e-19 Score=153.23 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=104.5
Q ss_pred HHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEccCC
Q psy4311 32 LKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQG 111 (190)
Q Consensus 32 l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G 111 (190)
-.++.+.|+..||+..++++|.+.+........ ......++.. .+...+.. ........+++.+++|+||||
T Consensus 76 ~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~----~l~~~l~~-~~~~~~~~~~g~ii~lvGptG 147 (374)
T PRK14722 76 HGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDT---LDAAADWAQS----VLAANLPV-LDSEDALMERGGVFALMGPTG 147 (374)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhhhhhcccCC---HHHHHHHHHH----HHHhcchh-hcCCCccccCCcEEEEECCCC
Confidence 367889999999999999999998865321111 1111122222 22222211 112223345678999999999
Q ss_pred CChhHHHHHHHHHHHh-cC-CcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----CcccccCceeeCCCCcc
Q psy4311 112 SGKTTTCTKLAYHYLK-KN-WKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHNMGLSLIPTYEKS 184 (190)
Q Consensus 112 ~GKTT~~~~la~~~~~-~~-~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~~~lvlid~~~r~ 184 (190)
+|||||+++|+..+.. .| .+|.+++.|+||.++.|||+.|++.+|+|+.......+ ..+...|+++||+.|++
T Consensus 148 vGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 148 VGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCC
Confidence 9999999999998754 35 58999999999999999999999999999976554332 12345799999999988
Q ss_pred c
Q psy4311 185 F 185 (190)
Q Consensus 185 ~ 185 (190)
.
T Consensus 228 ~ 228 (374)
T PRK14722 228 Q 228 (374)
T ss_pred c
Confidence 5
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.79 E-value=4.7e-18 Score=148.98 Aligned_cols=142 Identities=23% Similarity=0.230 Sum_probs=106.2
Q ss_pred HHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEccCC
Q psy4311 32 LKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQG 111 (190)
Q Consensus 32 l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G 111 (190)
...+.+.|+++||++.++++|.+.+......+. ...++...+.+.+.. +... ...+++.+++|+||||
T Consensus 134 ~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~------~~~~~~~~l~~~l~~-~~~~-----~~~~~g~vi~lvGpnG 201 (420)
T PRK14721 134 GMKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQ------SLKKTISLLTLNLRT-IGGD-----EIIEQGGVYALIGPTG 201 (420)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHh-cCCc-----cccCCCcEEEEECCCC
Confidence 467889999999999999999998876543221 122344444444432 1111 1124678999999999
Q ss_pred CChhHHHHHHHHHHHh-c-CCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----CcccccCceeeCCCCcc
Q psy4311 112 SGKTTTCTKLAYHYLK-K-NWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHNMGLSLIPTYEKS 184 (190)
Q Consensus 112 ~GKTT~~~~la~~~~~-~-~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~~~lvlid~~~r~ 184 (190)
+|||||+++|++.+.. . ..++.++..|+||.++.+|+..|++.+|+|+.......+ ..+..+++++||+.|++
T Consensus 202 ~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d~VLIDTaGrs 281 (420)
T PRK14721 202 VGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHMVLIDTVGMS 281 (420)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 9999999999997642 2 357899999999999999999999999999876654433 12445788999999987
Q ss_pred c
Q psy4311 185 F 185 (190)
Q Consensus 185 ~ 185 (190)
.
T Consensus 282 q 282 (420)
T PRK14721 282 Q 282 (420)
T ss_pred c
Confidence 5
No 24
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.71 E-value=2.8e-16 Score=140.43 Aligned_cols=143 Identities=22% Similarity=0.270 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEcc
Q psy4311 30 SMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGL 109 (190)
Q Consensus 30 ~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~ 109 (190)
+.-..+.+.|++.||+..+++.|.+.+....... ... ..+.+.|.+.+... ...+ ..++.+++|+||
T Consensus 292 P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~~------~~~----~~l~~~L~~~l~v~--~~~~-l~~G~vIaLVGP 358 (559)
T PRK12727 292 PVRAQALELMDDYGFDAGLTRDVAMQIPADTELH------RGR----GLMLGLLSKRLPVA--PVDP-LERGGVIALVGP 358 (559)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHhhhcccchh------hHH----HHHHHHHHHhcCcC--cccc-ccCCCEEEEECC
Confidence 3455677899999999999999999886542211 111 22334444444221 1212 245789999999
Q ss_pred CCCChhHHHHHHHHHHHhc--CCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----CcccccCceeeCCCC
Q psy4311 110 QGSGKTTTCTKLAYHYLKK--NWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHNMGLSLIPTYE 182 (190)
Q Consensus 110 ~G~GKTT~~~~la~~~~~~--~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~~~lvlid~~~ 182 (190)
+|+||||++.+|+.++... +++|.+++.|+||.++.+|++.+++..++++.......+ ..+..+|+|+||+.|
T Consensus 359 tGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG 438 (559)
T PRK12727 359 TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAG 438 (559)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecCCC
Confidence 9999999999999988654 468999999999999999999999999998875432211 123458999999999
Q ss_pred ccc
Q psy4311 183 KSF 185 (190)
Q Consensus 183 r~~ 185 (190)
++.
T Consensus 439 ~s~ 441 (559)
T PRK12727 439 MGQ 441 (559)
T ss_pred cch
Confidence 864
No 25
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.68 E-value=1.9e-16 Score=131.96 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=108.3
Q ss_pred HHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEE
Q psy4311 25 EEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVI 104 (190)
Q Consensus 25 ~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi 104 (190)
.+..++.+.+++..|+++||+.+++.++.+.....+.. ... ....+.+.+.+.+...+.+. ..-.+++.++
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~--~~~---~~~~vl~~v~~~l~~~~~~~----~~~~~~~~~i 78 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFEN--ATM---ITEEVIEYILEDMSSHFNTE----NVFEKEVQTI 78 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecC--CCc---cccHHHHHHhcccEEeeCCc----ccccCCCCEE
Confidence 45667788999999999999999999998865432221 110 01112122222222222211 1112366899
Q ss_pred EEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC--Ccc------cccCce
Q psy4311 105 MFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR--NPI------HNMGLS 176 (190)
Q Consensus 105 ~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~--~~l------~~~~lv 176 (190)
+|+|+||+||||++.+++..+...+.++.++++|.+|.++.+|++.+++..++|+.......+ ..+ ..+|++
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~V 158 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYI 158 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999999999887889999999999999999999999999998876432111 111 247999
Q ss_pred eeCCCCccc
Q psy4311 177 LIPTYEKSF 185 (190)
Q Consensus 177 lid~~~r~~ 185 (190)
++|+.|+++
T Consensus 159 iIDt~Gr~~ 167 (270)
T PRK06731 159 LIDTAGKNY 167 (270)
T ss_pred EEECCCCCc
Confidence 999999985
No 26
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.44 E-value=6.3e-14 Score=115.63 Aligned_cols=91 Identities=20% Similarity=0.094 Sum_probs=76.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
+++++..++|++++++|||||||||++++|++.+++..+.|.+.+.|..+....+ +|+..+ +.++.......+.
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~ke----lAk~ia--~vpQ~~~~~~~~t 92 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE----LAKKLA--YVPQSPSAPFGLT 92 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHH----HhhhEE--EeccCCCCCCCcE
Confidence 4677888899999999999999999999999999999999999999998876555 555544 4666666677899
Q ss_pred ccCceeeCCCCcccccc
Q psy4311 172 NMGLSLIPTYEKSFHWN 188 (190)
Q Consensus 172 ~~~lvlid~~~r~~~~~ 188 (190)
+.|+|.++++++..||.
T Consensus 93 V~d~V~~GR~p~~~~~~ 109 (258)
T COG1120 93 VYELVLLGRYPHLGLFG 109 (258)
T ss_pred EeehHhhcCCccccccc
Confidence 99999999999766554
No 27
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.34 E-value=4.7e-12 Score=98.31 Aligned_cols=82 Identities=39% Similarity=0.548 Sum_probs=68.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCc-----------cc
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP-----------IH 171 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~-----------l~ 171 (190)
+++++|++|+||||++.+++..+...+.+|.++++|.+|.+..+|++.+++..++|+.......+.. -.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 7899999999999999999999988889999999999999999999999999998877654333211 12
Q ss_pred ccCceeeCCCCcc
Q psy4311 172 NMGLSLIPTYEKS 184 (190)
Q Consensus 172 ~~~lvlid~~~r~ 184 (190)
..+++++|+.|+.
T Consensus 82 ~~d~viiDt~g~~ 94 (173)
T cd03115 82 NFDVVIVDTAGRL 94 (173)
T ss_pred CCCEEEEECcccc
Confidence 3678999999975
No 28
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.4e-11 Score=96.72 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=59.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC---------------------ChhHHHHHHH
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF---------------------RAGAYDQLKQ 150 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~---------------------r~~a~eql~~ 150 (190)
.+++|....|+|++++|||||||||+++.||..+.+..++|.+.++|+. |..+.|.+++
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~ 98 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKY 98 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHH
Confidence 4677888999999999999999999999999999999999999999974 4467899999
Q ss_pred HhhhcCCc
Q psy4311 151 NATKARIP 158 (190)
Q Consensus 151 ~~~~~~i~ 158 (190)
+|+.+++.
T Consensus 99 Fa~L~~l~ 106 (245)
T COG4555 99 FARLNGLS 106 (245)
T ss_pred HHHHhhhh
Confidence 99887764
No 29
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.05 E-value=8.6e-11 Score=97.26 Aligned_cols=52 Identities=29% Similarity=0.338 Sum_probs=49.1
Q ss_pred CCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 90 GVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 90 ~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
..+++++..++|.+++|+||||||||||++.|.+.+.+.+++|.+.+.|.||
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence 3567889999999999999999999999999999999999999999999998
No 30
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=1.1e-10 Score=96.19 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=65.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCC--CCCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSK--GKRN 168 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~--~~~~ 168 (190)
.+++++...+|.+++++|||||||||+++.+.+.+++..++|.+.+...... ....-|.+.++.. ....
T Consensus 20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~---------~~~~~IgYVPQ~~~~d~~f 90 (254)
T COG1121 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR---------RKRLRIGYVPQKSSVDRSF 90 (254)
T ss_pred eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc---------ccCCeEEEcCcccccCCCC
Confidence 3466788889999999999999999999999999999989898876653211 0012233344433 3446
Q ss_pred cccccCceeeCCCCcccccc
Q psy4311 169 PIHNMGLSLIPTYEKSFHWN 188 (190)
Q Consensus 169 ~l~~~~lvlid~~~r~~~~~ 188 (190)
|+++.|+|.++++++..|++
T Consensus 91 P~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 91 PITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred CcCHHHHHHccCcccccccc
Confidence 78889999999998876654
No 31
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.97 E-value=1.3e-10 Score=94.85 Aligned_cols=85 Identities=18% Similarity=0.083 Sum_probs=67.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC------------------ChhHHHHHHHHh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF------------------RAGAYDQLKQNA 152 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~------------------r~~a~eql~~~~ 152 (190)
..++++..++|++++++|+||||||||.+.+.+.+.+..+++...+.+.- +....+|++++|
T Consensus 18 v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla 97 (300)
T COG4152 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLA 97 (300)
T ss_pred ecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHH
Confidence 45678888999999999999999999999999999998888888876642 124679999999
Q ss_pred hhcCCceeecCCCCCCcccccCc
Q psy4311 153 TKARIPFYGSSKGKRNPIHNMGL 175 (190)
Q Consensus 153 ~~~~i~~~~~~~~~~~~l~~~~l 175 (190)
+..|+|........+..++.+++
T Consensus 98 ~LkGm~~~e~~~~~~~wLer~~i 120 (300)
T COG4152 98 ELKGMPKAEIQKKLQAWLERLEI 120 (300)
T ss_pred HhcCCcHHHHHHHHHHHHHhccc
Confidence 99898876555555555555444
No 32
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=2.7e-10 Score=92.15 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=69.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
.++++..+++++++++|+|||||||+++.+++..+...++|.+-+.|+-+....+. -+.|+.+.++....-+.++
T Consensus 20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r-----~r~Gi~~VPegR~iF~~LT 94 (237)
T COG0410 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER-----ARLGIAYVPEGRRIFPRLT 94 (237)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH-----HhCCeEeCcccccchhhCc
Confidence 45678889999999999999999999999999999988999999999887765542 2567777776666666677
Q ss_pred ccCceeeCCCCcc
Q psy4311 172 NMGLSLIPTYEKS 184 (190)
Q Consensus 172 ~~~lvlid~~~r~ 184 (190)
+.+...++.+.+.
T Consensus 95 VeENL~~g~~~~~ 107 (237)
T COG0410 95 VEENLLLGAYARR 107 (237)
T ss_pred HHHHHhhhhhccc
Confidence 7666666655543
No 33
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.96 E-value=4.5e-10 Score=90.16 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=62.5
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCcccc
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHN 172 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~~ 172 (190)
+++++..+|++.+++||||+||||+++.|++.+.+.++++.+.+.+.-...+.+ .|...++ .++.+....++..
T Consensus 19 ~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~----lA~~raV--lpQ~s~laFpFtv 92 (259)
T COG4559 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE----LARHRAV--LPQNSSLAFPFTV 92 (259)
T ss_pred CcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHH----HHHHhhh--cccCcccccceEH
Confidence 456777889999999999999999999999999999999999887754443333 2333333 4455555566777
Q ss_pred cCceeeCCCCc
Q psy4311 173 MGLSLIPTYEK 183 (190)
Q Consensus 173 ~~lvlid~~~r 183 (190)
.++|-++..+.
T Consensus 93 ~eVV~mGr~p~ 103 (259)
T COG4559 93 QEVVQMGRIPH 103 (259)
T ss_pred HHHHHhccccc
Confidence 77776666554
No 34
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.94 E-value=8.2e-10 Score=93.23 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=57.0
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh---------------------hHHHHHH
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA---------------------GAYDQLK 149 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~---------------------~a~eql~ 149 (190)
.+++++..++|++++|+|||||||||++++|++...+.++++.+.+.|.++. .+.|.++
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~ 100 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLE 100 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHH
Confidence 3567788899999999999999999999999999999999999998876541 3567777
Q ss_pred HHhhhcCCc
Q psy4311 150 QNATKARIP 158 (190)
Q Consensus 150 ~~~~~~~i~ 158 (190)
.++..++.+
T Consensus 101 ~~~~l~~~~ 109 (293)
T COG1131 101 FFARLYGLS 109 (293)
T ss_pred HHHHHhCCC
Confidence 777777654
No 35
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.94 E-value=1.8e-08 Score=67.97 Aligned_cols=74 Identities=28% Similarity=0.569 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-hhhhccccchhhHHHHHHHHHHHHH
Q psy4311 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQ-VIDFDEMASGLNKRRMIQSSVYKEL 83 (190)
Q Consensus 6 l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~l 83 (190)
|++++.+.++++.++..++++++++++++++++|+++||+++++++|++++++ .+. ..+.++.+.++.++.++|
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~----~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK----KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC----TTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc----ccCCCcHHHHHHHHHHHC
Confidence 68899999999999877789999999999999999999999999999999998 544 234456667777777654
No 36
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.92 E-value=6.5e-10 Score=95.63 Aligned_cols=81 Identities=17% Similarity=0.016 Sum_probs=65.4
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCcc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l 170 (190)
.+++++...+|++++|+||+||||||++++||+...+.++++.+.+.|..+... .+.++....+....-+++
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--------~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--------EKRPIGMVFQSYALFPHM 92 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--------hhcccceeecCcccCCCC
Confidence 356778889999999999999999999999999999999999999999887542 233455566666777888
Q ss_pred cccCceeeC
Q psy4311 171 HNMGLSLIP 179 (190)
Q Consensus 171 ~~~~lvlid 179 (190)
++.+.|..+
T Consensus 93 tV~~NVafG 101 (352)
T COG3842 93 TVEENVAFG 101 (352)
T ss_pred cHHHHhhhh
Confidence 877776443
No 37
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=6.4e-10 Score=90.32 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=73.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
.++++..++|+.++++||+||||||++++|.+...+..+.+.+.+.+....... +++.+-...| +..+....-+.+.
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k-~lr~~r~~iG--mIfQ~~nLv~r~s 97 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK-ELRKLRRDIG--MIFQQFNLVPRLS 97 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH-HHHHHHHhce--eEeccCCcccccH
Confidence 467788899999999999999999999999998888888898888777655443 4566644444 4666666667777
Q ss_pred ccCceeeCCCCcccccc
Q psy4311 172 NMGLSLIPTYEKSFHWN 188 (190)
Q Consensus 172 ~~~lvlid~~~r~~~~~ 188 (190)
..+.|+.+..++..+|+
T Consensus 98 v~~NVl~grl~~~s~~~ 114 (258)
T COG3638 98 VLENVLLGRLGYTSTWR 114 (258)
T ss_pred HHHHHHhhhcccchHHH
Confidence 77788888888877664
No 38
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.90 E-value=2.1e-10 Score=93.42 Aligned_cols=85 Identities=12% Similarity=0.018 Sum_probs=65.2
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCcc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l 170 (190)
.+++++...++++++++|||||||||+...+++.+++.+++|.+-+.|.-+....+ . .+.|+.-..+-...-+.+
T Consensus 20 l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~----i-ar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR----I-ARLGIARTFQITRLFPGL 94 (250)
T ss_pred EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHH----H-HhccceeecccccccCCC
Confidence 35677888999999999999999999999999999999999999999987766544 1 245665444444445556
Q ss_pred cccCceeeCC
Q psy4311 171 HNMGLSLIPT 180 (190)
Q Consensus 171 ~~~~lvlid~ 180 (190)
+..|.+.+..
T Consensus 95 TVlENv~va~ 104 (250)
T COG0411 95 TVLENVAVGA 104 (250)
T ss_pred cHHHHHHHHh
Confidence 6666665553
No 39
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=1.3e-09 Score=86.80 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=64.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
.+++...++|.+..|+|||||||||++..++++++...+.|.+-+.|.-.....+ +|++..| ..+.......++
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~----LAk~lSI--LkQ~N~i~~rlT 91 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE----LAKKLSI--LKQENHINSRLT 91 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH----HHHHHHH--HHhhchhhheeE
Confidence 4566778899999999999999999999999999999999999988876554443 3444333 333333444566
Q ss_pred ccCceeeCCCCcc
Q psy4311 172 NMGLSLIPTYEKS 184 (190)
Q Consensus 172 ~~~lvlid~~~r~ 184 (190)
+.|+|..++||-+
T Consensus 92 V~dLv~FGRfPYS 104 (252)
T COG4604 92 VRDLVGFGRFPYS 104 (252)
T ss_pred HHHHhhcCCCccc
Confidence 6778888877755
No 40
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.88 E-value=1.3e-09 Score=88.50 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=62.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
.++++..++|++++++||+||||||++..+++..++.++.|.+.+.|.......+...... ..+.+..+....-+.++
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~--~~iGfvFQ~~nLl~~lt 99 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR--KKIGFVFQNFNLLPDLT 99 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH--HhEEEECccCCCCCCCC
Confidence 4567888999999999999999999999999999999999999988988766544333333 33445666555555555
Q ss_pred ccCce
Q psy4311 172 NMGLS 176 (190)
Q Consensus 172 ~~~lv 176 (190)
..+.|
T Consensus 100 v~ENv 104 (226)
T COG1136 100 VLENV 104 (226)
T ss_pred HHHHH
Confidence 54444
No 41
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.87 E-value=8.3e-09 Score=91.50 Aligned_cols=104 Identities=17% Similarity=0.325 Sum_probs=72.5
Q ss_pred HHHH--HHHHHHhCCcCHHHHHHHHHHHHhhhh--hccccchhhHHHHHHHHHHHHHHhhcCCC-CcccC----CCC-CC
Q psy4311 31 MLKE--ICAALLEADVNIKLVKKLRENVRQVID--FDEMASGLNKRRMIQSSVYKELIKLVDPG-VKAHQ----PQK-GK 100 (190)
Q Consensus 31 ~l~e--l~~~L~~~dv~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~l~~~l~~~-~~~~~----~~~-~~ 100 (190)
.+.+ |.+.|+++||+++++.+|++.+++.+. +.... .+..++..+.+.+.+.+.+. ...+. +.. .+
T Consensus 179 PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~----~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~ 254 (475)
T PRK12337 179 PFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVV----RRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPR 254 (475)
T ss_pred CCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc----cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCC
Confidence 3455 889999999999999999999988763 22221 23345555655555544322 11111 222 35
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
|.++++.|+||+||||++.+||..+. . ..++..|+.|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg---~-~~ii~tD~iR~ 292 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLG---I-TRIVSTDAVRE 292 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC---C-cEEeehhHHHH
Confidence 89999999999999999999999883 2 34788998765
No 42
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.83 E-value=2.7e-09 Score=85.76 Aligned_cols=80 Identities=15% Similarity=0.010 Sum_probs=59.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
+++++...+|++++++||+||||||+++||.++-..+++++.+.+.+..... ++....++.|+ ..+....-+.++
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~---~~~~~R~~vGm--VFQ~fnLFPHlT 93 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK---DILKLRRKVGM--VFQQFNLFPHLT 93 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---hHHHHHHhcCe--ecccccccccch
Confidence 4667888999999999999999999999999988888898888776665433 33334344554 555556666666
Q ss_pred ccCce
Q psy4311 172 NMGLS 176 (190)
Q Consensus 172 ~~~lv 176 (190)
..+.+
T Consensus 94 vleNv 98 (240)
T COG1126 94 VLENV 98 (240)
T ss_pred HHHHH
Confidence 65554
No 43
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.77 E-value=3.3e-09 Score=90.88 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=60.3
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCcc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l 170 (190)
.+++++....|++++|+|||||||||+++.||++..+.++++.+.+.|+-.... +..++....+....-+.|
T Consensus 19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P--------~~R~iamVFQ~yALyPhm 90 (338)
T COG3839 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP--------EKRGIAMVFQNYALYPHM 90 (338)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--------hHCCEEEEeCCccccCCC
Confidence 456778888999999999999999999999999999999999999888755321 234555555555555666
Q ss_pred cccCce
Q psy4311 171 HNMGLS 176 (190)
Q Consensus 171 ~~~~lv 176 (190)
++++.+
T Consensus 91 tV~~Ni 96 (338)
T COG3839 91 TVYENI 96 (338)
T ss_pred cHHHHh
Confidence 665554
No 44
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.75 E-value=4.2e-08 Score=82.86 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=70.1
Q ss_pred HHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCc-ccC-----CCCCCCeEEEEEc
Q psy4311 35 ICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVK-AHQ-----PQKGKPNVIMFVG 108 (190)
Q Consensus 35 l~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~-~~~-----~~~~~~~vi~l~G 108 (190)
|.+.|..+++++++|-++...+.+.+..+.. .....+.+.+.+.+.|.+...+... .+. .....|.++++.|
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~--~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G 99 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEGI--KEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGG 99 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcCC--EEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 6788999999999988888888877665422 2223334555555555554332111 111 1224678999999
Q ss_pred cCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 109 LQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 109 ~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
++||||||++.+||..+ +.. .++++|++|.
T Consensus 100 ~sgsGKStlA~~La~~l---~~~-~vi~~D~~re 129 (301)
T PRK04220 100 ASGVGTSTIAFELASRL---GIR-SVIGTDSIRE 129 (301)
T ss_pred CCCCCHHHHHHHHHHHh---CCC-EEEechHHHH
Confidence 99999999999999998 343 4788999874
No 45
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=1e-08 Score=83.55 Aligned_cols=85 Identities=11% Similarity=0.052 Sum_probs=65.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
+++++...+|++++++||+|+||||+++.+.+.++++.++|.+.+.|.......+ +....++.|+ ..+....-..++
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~-~~~ir~r~Gv--lFQ~gALFsslt 101 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE-LYEIRKRMGV--LFQQGALFSSLT 101 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH-HHHHHhheeE--Eeeccccccccc
Confidence 4567888999999999999999999999999999999999999999977665444 3344556666 444444555566
Q ss_pred ccCceeeC
Q psy4311 172 NMGLSLIP 179 (190)
Q Consensus 172 ~~~lvlid 179 (190)
++|.|.+.
T Consensus 102 V~eNVafp 109 (263)
T COG1127 102 VFENVAFP 109 (263)
T ss_pred hhHhhhee
Confidence 66666443
No 46
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.70 E-value=5.4e-08 Score=82.33 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=41.9
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+..+++.+++|+|++||||||++..++..+...|.+|.+++.|..+.
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~ 75 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP 75 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 34566889999999999999999999999999999999999997653
No 47
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.3e-08 Score=91.01 Aligned_cols=88 Identities=14% Similarity=0.016 Sum_probs=72.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
+++++...+|+|.+++|-|||||||+++.|++.+.+..+++.+-+......+..+ |...||..+.+....-+.++
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~-----A~~~GI~~V~QEl~L~p~Ls 99 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD-----ALAAGIATVHQELSLVPNLS 99 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH-----HHhCCcEEEeechhccCCcc
Confidence 4567888999999999999999999999999999999998877755543333333 66789988888877778889
Q ss_pred ccCceeeCCCCcc
Q psy4311 172 NMGLSLIPTYEKS 184 (190)
Q Consensus 172 ~~~lvlid~~~r~ 184 (190)
.++.++++..++.
T Consensus 100 VaeNifLgre~~~ 112 (500)
T COG1129 100 VAENIFLGREPTR 112 (500)
T ss_pred HHHHhhccccccc
Confidence 8888888887765
No 48
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.69 E-value=1.4e-08 Score=80.37 Aligned_cols=82 Identities=11% Similarity=-0.051 Sum_probs=62.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
.+++++.++++.+.++||+||||||+++.|....++..+++.+.+.|.-+.... ++-.+-++.|+ ..++...-+..+
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~-~iP~LRR~IGv--VFQD~rLL~~~t 95 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR-EIPFLRRQIGV--VFQDFRLLPDRT 95 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccc-ccchhhheeee--Eeeeccccccch
Confidence 467788999999999999999999999999999999999999999998876543 33344445555 444444444455
Q ss_pred ccCce
Q psy4311 172 NMGLS 176 (190)
Q Consensus 172 ~~~lv 176 (190)
.+|.|
T Consensus 96 vyeNV 100 (223)
T COG2884 96 VYENV 100 (223)
T ss_pred Hhhhh
Confidence 55544
No 49
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.68 E-value=1.1e-08 Score=82.05 Aligned_cols=48 Identities=23% Similarity=0.139 Sum_probs=41.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 68 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI 68 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEeh
Confidence 456677789999999999999999999999999988888887765554
No 50
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.67 E-value=8e-09 Score=90.80 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=45.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++++...+|++++|+|||||||||+++.|++.+++..++|.+.+.+..+..
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~ 71 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC
Confidence 4567788899999999999999999999999999998899998887776543
No 51
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.67 E-value=8.9e-09 Score=87.35 Aligned_cols=49 Identities=18% Similarity=0.069 Sum_probs=42.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecc
Confidence 4567788899999999999999999999999999988888888776654
No 52
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.4e-08 Score=85.47 Aligned_cols=80 Identities=13% Similarity=0.014 Sum_probs=60.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec---cCCChhHHHHHHHHhhhcCCceeecCCCCCCc
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA---DTFRAGAYDQLKQNATKARIPFYGSSKGKRNP 169 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~---D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~ 169 (190)
++++..+.|+.++++|||||||||++++||++..++.++|.+-+. |.-+ +....+ .|.+..+....-+.
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~------~~~~~R--~VGfvFQ~YALF~H 91 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN------LAVRDR--KVGFVFQHYALFPH 91 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc------cchhhc--ceeEEEechhhccc
Confidence 567778899999999999999999999999999999999998888 6543 222222 34445555556677
Q ss_pred ccccCceeeCC
Q psy4311 170 IHNMGLSLIPT 180 (190)
Q Consensus 170 l~~~~lvlid~ 180 (190)
|++++.|..+.
T Consensus 92 mtVa~NIAFGl 102 (345)
T COG1118 92 MTVADNIAFGL 102 (345)
T ss_pred chHHhhhhhcc
Confidence 77777765444
No 53
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.65 E-value=1.1e-08 Score=80.53 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL 56 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc
Confidence 456677889999999999999999999999999988888887765554
No 54
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.65 E-value=1.7e-08 Score=80.20 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=42.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 63 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence 4566777889999999999999999999999999888888887766643
No 55
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.8e-08 Score=82.53 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=43.0
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++...+|++++++||+||||||+++.+|+..++..+.|.+.+...
T Consensus 19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v 67 (248)
T COG1116 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 (248)
T ss_pred eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 3567788899999999999999999999999999999989887766543
No 56
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.63 E-value=1.2e-08 Score=87.85 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=43.3
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.+++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 57 l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106 (340)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECC
Confidence 34567788899999999999999999999999999988888888776653
No 57
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=1.6e-08 Score=80.96 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=40.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 64 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV 64 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 456778889999999999999999999999999988888887655443
No 58
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.62 E-value=1.4e-08 Score=85.89 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=42.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 58 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVV 58 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4567788899999999999999999999999999888888887766643
No 59
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.62 E-value=2.2e-08 Score=79.97 Aligned_cols=48 Identities=21% Similarity=0.124 Sum_probs=40.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEc
Confidence 456677788999999999999999999999999988888887765544
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.62 E-value=1.6e-08 Score=80.86 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..+++.+-+.|..
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN 67 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 4566778899999999999999999999999999888888877665553
No 61
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.61 E-value=2.3e-08 Score=82.35 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=48.9
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHH
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYD 146 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~e 146 (190)
.+++++..++|++++|+||+|||||||++++-+++.+..+++.+.+.|+-....++
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVE 72 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHH
Confidence 45677888999999999999999999999999999999999999988876555444
No 62
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.61 E-value=1.9e-08 Score=81.12 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 4567778899999999999999999999999999888888877665543
No 63
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=2.3e-08 Score=81.22 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=43.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|..+.
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~ 76 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKL 76 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC
Confidence 456677888999999999999999999999999988888888776665443
No 64
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=1.7e-08 Score=82.10 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 65 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS 65 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4566778899999999999999999999999999888888877665543
No 65
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.60 E-value=8.5e-08 Score=77.95 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=39.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE-EeccCCChh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL-VCADTFRAG 143 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l-i~~D~~r~~ 143 (190)
+++.+++|+|||||||||+++.|+..+.+.++.+.+ +..|.|...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~ 76 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD 76 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC
Confidence 567899999999999999999999999998888777 888877643
No 66
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=2.2e-08 Score=81.26 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=42.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.|..+
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTL 71 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence 45667778999999999999999999999999999888888877666543
No 67
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.60 E-value=3.2e-08 Score=80.12 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=41.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 64 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI 64 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 456677788999999999999999999999999988888887765544
No 68
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.60 E-value=2.1e-08 Score=80.54 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI 66 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 456677788999999999999999999999999988888887765554
No 69
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.59 E-value=1.9e-09 Score=85.81 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.1
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCcc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l 170 (190)
..++++..++|++++++|||||||||+.-++.+..++..++|.+-+.|.-...-.. ..+.|+.+.++....-.-+
T Consensus 20 v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~-----RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK-----RARLGIGYLPQEASIFRKL 94 (243)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHH-----HhhcCcccccccchHhhcC
Confidence 35677888999999999999999999999999999999999999999986654332 2256776666554433333
Q ss_pred c
Q psy4311 171 H 171 (190)
Q Consensus 171 ~ 171 (190)
+
T Consensus 95 t 95 (243)
T COG1137 95 T 95 (243)
T ss_pred c
Confidence 3
No 70
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.59 E-value=2.3e-08 Score=79.88 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=41.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.+..
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 3556777899999999999999999999999999888888877665543
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.59 E-value=3.1e-08 Score=79.64 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=42.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT 65 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence 4566778899999999999999999999999999888888877665543
No 72
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.59 E-value=2e-08 Score=80.25 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=40.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~ 64 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV 64 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 456677789999999999999999999999999888778777655443
No 73
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.59 E-value=1.8e-08 Score=80.86 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 67 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDL 67 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeh
Confidence 455677788999999999999999999999999988888887766554
No 74
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.59 E-value=7.8e-08 Score=81.09 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=38.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH--hcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL--KKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~--~~~~~v~li~~D~~r~ 142 (190)
+.|.+|+|.|||||||||+++.|...+. +.+++|.+++.|.|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 4678999999999999999999999987 3456899999998764
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.59 E-value=2.3e-08 Score=81.53 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT 67 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence 4567778899999999999999999999999999888888877665543
No 76
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.59 E-value=1.9e-08 Score=80.13 Aligned_cols=47 Identities=21% Similarity=0.113 Sum_probs=39.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 63 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 45667778899999999999999999999999998887877665544
No 77
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.58 E-value=2.9e-08 Score=85.56 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=45.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.++++..++|++++++|||||||||++++|++..++..++|.+.+.|..+.
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC
Confidence 456788889999999999999999999999999999889998888776554
No 78
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.58 E-value=2.3e-08 Score=79.99 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=39.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.+
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 62 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP 62 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCcc
Confidence 45667788999999999999999999999999998877777665443
No 79
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.58 E-value=3.7e-08 Score=79.97 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=41.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT 65 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECC
Confidence 4556777889999999999999999999999999888888877655543
No 80
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.58 E-value=2.2e-08 Score=80.07 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=41.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 66 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS 66 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 4566777889999999999999999999999999888888877666543
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=2.9e-08 Score=80.79 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=42.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.+..+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 67 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINK 67 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccc
Confidence 45667788999999999999999999999999998888888776655543
No 82
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=2.5e-08 Score=81.33 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=40.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..+++.+-+.+.
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA 66 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 456677789999999999999999999999999888777777655443
No 83
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.57 E-value=2.7e-08 Score=79.35 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~ 65 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI 65 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 456778889999999999999999999999999988888887765554
No 84
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=2.8e-08 Score=79.96 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=40.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 64 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV 64 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 355677788999999999999999999999999888878887665443
No 85
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.56 E-value=4.4e-08 Score=79.27 Aligned_cols=50 Identities=24% Similarity=0.142 Sum_probs=42.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.+...
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITK 66 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 45677788999999999999999999999999998888888876666543
No 86
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=2.3e-08 Score=80.53 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=38.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
+++++..++|++++++|||||||||+++.|++.+.+..+++.+-+.
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 66 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE 66 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 4566777889999999999999999999999998877777765443
No 87
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.56 E-value=2.7e-08 Score=80.01 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..+++.+-+.|.
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 69 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence 355677789999999999999999999999999988888887765554
No 88
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=2.8e-08 Score=82.10 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=39.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 64 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP 64 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 45677788999999999999999999999999998877777664433
No 89
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.56 E-value=2.6e-08 Score=84.23 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=42.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVL 67 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4566778899999999999999999999999999888888877666543
No 90
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=2.7e-08 Score=77.67 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL 64 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 455677788999999999999999999999999988888888766554
No 91
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=4.6e-08 Score=79.78 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=42.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..+++.+.+.+..
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 4566778899999999999999999999999999888888887766543
No 92
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.55 E-value=2.8e-08 Score=84.08 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=41.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV 68 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 456778889999999999999999999999999988888887766554
No 93
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.55 E-value=4.3e-08 Score=76.83 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=42.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++..++|++++++||||+||||+++.|++.+.+..+++.+.+.+..+
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc
Confidence 35567778899999999999999999999999999888888877666543
No 94
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.55 E-value=1.1e-07 Score=73.92 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=39.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
++|.+++|+|++||||||+++.|+..+...++++.+++.|.+|.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 56889999999999999999999999988888899999997654
No 95
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2.9e-08 Score=81.17 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=41.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 67 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence 456777788999999999999999999999999988888888776664
No 96
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.55 E-value=3e-08 Score=80.13 Aligned_cols=48 Identities=23% Similarity=0.145 Sum_probs=40.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+||||+||||+++.|++.+.+..+++.+.+.+.
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~ 74 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL 74 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEc
Confidence 455677788999999999999999999999999988888887665554
No 97
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.55 E-value=4.2e-08 Score=79.27 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH-----HhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY-----LKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~-----~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+ .+..+++.+.+.+.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 69 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDI 69 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEh
Confidence 4566777899999999999999999999999999 77778887765554
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.55 E-value=3e-08 Score=80.71 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=40.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i 65 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL 65 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence 456677789999999999999999999999999988888887655443
No 99
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.55 E-value=3.7e-07 Score=78.33 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=39.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++.+|+|.|+|||||||++..|...+...+.+|.+++.|...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 4578999999999999999999999999889999999999743
No 100
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.55 E-value=5.1e-08 Score=78.90 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=41.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.+..
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS 72 (225)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence 4567788899999999999999999999999998888888876655443
No 101
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=2.9e-08 Score=79.31 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=38.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK 62 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC
Confidence 3556777899999999999999999999999998877777765443
No 102
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.1e-07 Score=74.38 Aligned_cols=47 Identities=36% Similarity=0.552 Sum_probs=43.0
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
..++|.+++|.|++||||||++..|...|...|.++.+.++|..|.+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 34678899999999999999999999999999999999999987754
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=3.5e-08 Score=82.83 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=42.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..++++..++|++++|+|||||||||+++.|++.+.+..++|.+-+.+..
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT 72 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 34567778899999999999999999999999999988888887666553
No 104
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=4.3e-08 Score=84.47 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=44.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+..+.
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAL 72 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcC
Confidence 456778889999999999999999999999999998888898877776543
No 105
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.54 E-value=4.7e-08 Score=75.48 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=42.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++||||+||||+++.|++.+.+..++|.+.+.+..
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~ 65 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS 65 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence 4556777899999999999999999999999999888888887665544
No 106
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=3.5e-08 Score=85.44 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=43.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++..++|++++++|||||||||+++.|++...+..+++.+-+.|...
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~ 70 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE 70 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 35667778899999999999999999999999999888889887777654
No 107
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=3.9e-08 Score=80.25 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=41.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 456677789999999999999999999999999988888888766654
No 108
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.53 E-value=3.7e-08 Score=80.02 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=39.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.+
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 48 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ 48 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 4566778899999999999999999999999998888888765544
No 109
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.53 E-value=4.9e-08 Score=84.77 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=45.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
.++++..++|++++|+|||||||||++++|++.+.+..++|.+-+.|..+..
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~ 61 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS 61 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCC
Confidence 4667888899999999999999999999999999999999988887776543
No 110
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.53 E-value=3.9e-08 Score=80.13 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++++|||||||||+++.|++.+.+..+++.+-+.+..
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN 66 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 4566777889999999999999999999999999888888887766654
No 111
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=3.7e-08 Score=78.71 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=40.4
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 62 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 45677788999999999999999999999999988888887765554
No 112
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=5e-08 Score=79.37 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=42.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.+..+
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITD 71 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCC
Confidence 45677788999999999999999999999999998888888877666543
No 113
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=4.4e-08 Score=80.03 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++||||+||||+++.|++.+.+..++|.+-+.+.
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI 65 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEc
Confidence 455677789999999999999999999999999988888887765554
No 114
>PRK10908 cell division protein FtsE; Provisional
Probab=98.52 E-value=3.9e-08 Score=79.26 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=41.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 67 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT 67 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4566777899999999999999999999999999888888877665543
No 115
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.51 E-value=4.2e-08 Score=77.78 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=40.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL 64 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc
Confidence 456677889999999999999999999999999988878777655543
No 116
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.51 E-value=4.7e-08 Score=77.70 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++++||||+||||+++.|++.+.+..++|.+.+.+.
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~ 65 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc
Confidence 456677889999999999999999999999999988888887765544
No 117
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=6.9e-08 Score=79.30 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=42.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+..+
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG 71 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCC
Confidence 45667778899999999999999999999999998888888877666543
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=4.8e-08 Score=81.58 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=42.8
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..++++...+|++++|+|+|||||||+++.|++.+.+..++|.+-+.+..
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 69 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT 69 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 34667788899999999999999999999999999988888877666543
No 119
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.51 E-value=4.8e-08 Score=79.44 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 67 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI 67 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEeh
Confidence 456677788999999999999999999999999988888887766554
No 120
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.51 E-value=4.9e-08 Score=78.49 Aligned_cols=49 Identities=18% Similarity=0.052 Sum_probs=41.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 68 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh
Confidence 3456777888999999999999999999999999988888887765554
No 121
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.51 E-value=6.9e-08 Score=79.65 Aligned_cols=47 Identities=23% Similarity=0.154 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 45667788999999999999999999999999998888888877666
No 122
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=5e-08 Score=81.64 Aligned_cols=50 Identities=20% Similarity=0.054 Sum_probs=43.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++...+|++++|+||||+||||+++.|++.+++..++|.+-+.|...
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE 73 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 45667788999999999999999999999999999888889887766543
No 123
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.51 E-value=4.8e-08 Score=77.33 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++..++|++++++|+|||||||+++.|++.+.+..+++.+-+.+.
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 64 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCccc
Confidence 5667788999999999999999999999999988888887765553
No 124
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=6e-08 Score=79.20 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=49.4
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC-----------ChhHHHHHHHHhhhcCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF-----------RAGAYDQLKQNATKARI 157 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~-----------r~~a~eql~~~~~~~~i 157 (190)
.++++|...+|..++++|+|||||||+++.|++.+.|..++|.+- .++. -...+|+.+..+..+|.
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~-G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVT-GKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEc-ceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 356788889999999999999999999999999999988877543 3331 12345555555555554
No 125
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.3e-07 Score=74.72 Aligned_cols=65 Identities=17% Similarity=0.051 Sum_probs=52.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc--CCCh-------------------hHHHHHHH
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD--TFRA-------------------GAYDQLKQ 150 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D--~~r~-------------------~a~eql~~ 150 (190)
.+++|....++.+-+.||||+||||+++.||+.+.+..++|.+-+.. ..|. .+.|+|+.
T Consensus 19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F 98 (209)
T COG4133 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF 98 (209)
T ss_pred cceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHH
Confidence 45667788999999999999999999999999999999999887443 2332 46788888
Q ss_pred HhhhcC
Q psy4311 151 NATKAR 156 (190)
Q Consensus 151 ~~~~~~ 156 (190)
|.+.++
T Consensus 99 ~~~~~~ 104 (209)
T COG4133 99 WQRFHG 104 (209)
T ss_pred HHHHhC
Confidence 876555
No 126
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=5.6e-08 Score=81.29 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=43.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
..++++..++|++++|+|+|||||||+++.|++.+.+..++|.+.+.+..+
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE 73 (279)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 345677888999999999999999999999999999888888887766543
No 127
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=5.3e-08 Score=75.60 Aligned_cols=48 Identities=23% Similarity=0.150 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++||||+||||+++.|++.+.+..+++.+.+.+.
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~ 66 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL 66 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh
Confidence 455677788999999999999999999999999988888887665554
No 128
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.50 E-value=4.9e-08 Score=77.84 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 64 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY 64 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcc
Confidence 455677788999999999999999999999999988888887765554
No 129
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.50 E-value=8.7e-08 Score=74.97 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=41.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++||||+||||+++.|++.+.+..++|.+-+.+.
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~ 63 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL 63 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 355677788999999999999999999999999988888888766554
No 130
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=4.9e-08 Score=77.99 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=39.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..+++ +++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL 64 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc
Confidence 3456666678 99999999999999999999999888888877665543
No 131
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.50 E-value=1.4e-07 Score=76.58 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=35.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHh--cCCcEEEEeccCCCh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLK--KNWKACLVCADTFRA 142 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~--~~~~v~li~~D~~r~ 142 (190)
++++.|||||||||+++.|+..+.+ .+.++.++..|.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 5899999999999999999999975 567899999998854
No 132
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.50 E-value=5.4e-08 Score=78.07 Aligned_cols=48 Identities=25% Similarity=0.089 Sum_probs=40.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++|+|+|||||||+++.|++.+.+..++|.+-+.+.
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 69 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV 69 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEc
Confidence 355677788999999999999999999999999988888887765543
No 133
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.50 E-value=6.4e-08 Score=80.25 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=42.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+-+.+..+
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 45677888999999999999999999999999998888888776656543
No 134
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.50 E-value=5.5e-08 Score=78.91 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=39.2
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh----cCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK----KNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~----~~~~v~li~~D~ 139 (190)
++++..++|++++++|||||||||+++.|++.+++ ..++|.+-+.+.
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~ 54 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL 54 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEec
Confidence 45677788999999999999999999999999987 677776655443
No 135
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.50 E-value=5.5e-08 Score=79.07 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=41.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.|.
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL 66 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeeh
Confidence 455677788999999999999999999999999988888887765553
No 136
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.50 E-value=5.7e-08 Score=79.58 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=40.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++..++|.+++++|||||||||+++.|++.+.+..++|.+-+.+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 66 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDIT 66 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 45667788999999999999999999999999988877877765544
No 137
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.50 E-value=5.3e-08 Score=77.48 Aligned_cols=48 Identities=21% Similarity=0.050 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|+||+||||+++.|++.+.+..+++.+.+.+.
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL 64 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 456677789999999999999999999999999988888887765554
No 138
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.49 E-value=5.1e-08 Score=77.93 Aligned_cols=47 Identities=21% Similarity=0.108 Sum_probs=40.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++..++|++++++||||+||||+++.|++.+.+..++|.+-+.+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 65 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 45667788999999999999999999999999988877878765544
No 139
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.49 E-value=5.6e-08 Score=79.61 Aligned_cols=48 Identities=23% Similarity=0.139 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~ 139 (190)
+++++..++|++++++|+|||||||+++.|++.+.+. .++|.+.+.+.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEc
Confidence 4567788899999999999999999999999999876 78887765554
No 140
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=4.8e-08 Score=81.24 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=41.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 65 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence 456677788999999999999999999999999988888887766554
No 141
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=5.9e-08 Score=78.67 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV 66 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh
Confidence 455677788999999999999999999999999988888887665443
No 142
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.49 E-value=5.6e-08 Score=79.27 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+||||+||||+++.|++.+.+..++|.+.+.+.
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 66 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence 456677889999999999999999999999999988888888766554
No 143
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=6.7e-08 Score=80.64 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=42.3
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++++...+|++++|+||||+||||+++.|++.+++..++|.+.+.+.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDT 66 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEC
Confidence 3466778889999999999999999999999999988888887776654
No 144
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.49 E-value=6.7e-08 Score=77.90 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=38.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
+++++...+|++++++|||||||||+++.|++.+.+..++|.+-
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 68 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR 68 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEe
Confidence 45667778899999999999999999999999998888888764
No 145
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.49 E-value=5.7e-08 Score=78.20 Aligned_cols=42 Identities=21% Similarity=0.056 Sum_probs=37.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
+++++..+++++++++|||||||||+++.|++.+.+..+++.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 356677889999999999999999999999999888777775
No 146
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.49 E-value=5.8e-08 Score=80.65 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH 78 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 4567788899999999999999999999999999888888877665543
No 147
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.49 E-value=5.3e-08 Score=79.99 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=42.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..+++.+-+.+..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY 65 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4567778899999999999999999999999999888888877665553
No 148
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=5.9e-08 Score=78.40 Aligned_cols=47 Identities=23% Similarity=0.192 Sum_probs=40.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++++..++|++++++||||+||||+++.|++.+.+..+++.+-+.+
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 66 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID 66 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEe
Confidence 45667788999999999999999999999999998888888765544
No 149
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.49 E-value=1.6e-08 Score=75.05 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=40.9
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++++...++++++|+|+||+||||+++.|++.+.+..+.+.+.+.+...
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD 51 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc
Confidence 3456667899999999999999999999999998877778777666554
No 150
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.49 E-value=7.1e-08 Score=74.99 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=41.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++++||||+||||+++.|++.+.+..+++.+-+.+..
T Consensus 19 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67 (173)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence 4556777889999999999999999999999999888888877655543
No 151
>PRK06696 uridine kinase; Validated
Probab=98.49 E-value=5.1e-07 Score=73.07 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=40.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGA 144 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a 144 (190)
+.+.+|++.|++||||||++..|+..+...|..+..++.|.|....
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 4578999999999999999999999998777788888999987554
No 152
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.49 E-value=7.9e-08 Score=78.27 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=40.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+ .+..++|.+.+.+..
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 4567788899999999999999999999999984 566777877665543
No 153
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.48 E-value=6.2e-08 Score=77.82 Aligned_cols=47 Identities=23% Similarity=0.166 Sum_probs=40.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++++..++|++++++|||||||||+++.|++...+..+++.+.+.+
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 67 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD 67 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE
Confidence 45667788999999999999999999999999988887877765544
No 154
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=5.4e-08 Score=80.96 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=41.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++..++|++++|+|||||||||+++.|++.+.+..+++.+-+.+.
T Consensus 40 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~ 88 (269)
T cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI 88 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 3566778889999999999999999999999999988888887755554
No 155
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=5e-08 Score=81.98 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=42.0
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++...+|++++|+|||||||||+++.|++.+.+..+++.+-+.+.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 3466778889999999999999999999999999988888887766554
No 156
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=4.9e-08 Score=81.97 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=42.1
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 3456677889999999999999999999999999988888887766554
No 157
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=5.3e-08 Score=80.73 Aligned_cols=48 Identities=21% Similarity=0.130 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 75 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL 75 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh
Confidence 456677889999999999999999999999999988888887766554
No 158
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.48 E-value=1.7e-07 Score=72.19 Aligned_cols=43 Identities=37% Similarity=0.486 Sum_probs=38.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+|.+|+|.|.+||||||+++.|...|...|.++.+++.|..|.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 4789999999999999999999999999999999999998775
No 159
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.48 E-value=4.8e-08 Score=81.33 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=40.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT 71 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence 456777889999999999999999999999999888878887655443
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=5e-08 Score=81.46 Aligned_cols=48 Identities=17% Similarity=0.033 Sum_probs=40.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|.+++|+|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 71 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI 71 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 456677788999999999999999999999999988888887755443
No 161
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.48 E-value=1.1e-07 Score=78.19 Aligned_cols=47 Identities=23% Similarity=0.146 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.+
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS 66 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccc
Confidence 45677788899999999999999999999999998888888876554
No 162
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.3e-07 Score=79.75 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=52.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARI 157 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i 157 (190)
+++++..++|.+++++|.+||||||+++++-.+-++..++|.+.+.|....... .|+...++.|+
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~-~Lr~~R~~IGM 87 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEA-ELRQLRQKIGM 87 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChH-HHHHHHhhccE
Confidence 457788899999999999999999999999999999999999988887665433 34555445554
No 163
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.48 E-value=6.7e-08 Score=79.88 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=41.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|.+++|+|||||||||+++.|++.+.+..++|.+-+.+..
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~ 67 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA 67 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcc
Confidence 4566778899999999999999999999999999888888877665543
No 164
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=7.6e-08 Score=79.94 Aligned_cols=48 Identities=21% Similarity=0.045 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 73 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 456677789999999999999999999999999988888887766554
No 165
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=8.9e-08 Score=84.17 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=44.6
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
..++++..++|++++|+|||||||||+++.|++.+.+..+++.+-+.|...
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~ 94 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK 94 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCc
Confidence 456778888999999999999999999999999999988989887767544
No 166
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=6.4e-08 Score=77.16 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH---hcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL---KKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~---~~~~~v~li~~D~~ 140 (190)
.++++..+++++++++|||||||||+++.|++.+. +..+++.+.+.+..
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~ 75 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc
Confidence 35567778999999999999999999999999988 66788877666554
No 167
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.47 E-value=7.1e-08 Score=79.92 Aligned_cols=43 Identities=19% Similarity=0.068 Sum_probs=37.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..++|.+
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 4566778899999999999999999999999999887777764
No 168
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=7.3e-08 Score=80.42 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=41.9
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 69 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 3456777889999999999999999999999999988888887766554
No 169
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.47 E-value=2e-07 Score=82.64 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=68.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
+++++...+|++.+++|-|||||||+++.|.+.++++.+++.+-+..+.=.+..+ |.+.||....+....-+.++
T Consensus 21 d~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~d-----A~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRD-----AIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred CceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHH-----HHHcCCcEEeeccccccccc
Confidence 4567888899999999999999999999999999999998877766543222222 55788988888887778888
Q ss_pred ccCceeeCCCC
Q psy4311 172 NMGLSLIPTYE 182 (190)
Q Consensus 172 ~~~lvlid~~~ 182 (190)
..+.+.++..+
T Consensus 96 V~ENiiLg~e~ 106 (501)
T COG3845 96 VAENIILGLEP 106 (501)
T ss_pred hhhhhhhcCcc
Confidence 88888766654
No 170
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.46 E-value=9.2e-08 Score=74.03 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=36.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+++++...++++++++|||||||||+++.|++.+.+..+++.+
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 4566777889999999999999999999999998877665544
No 171
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.46 E-value=8.5e-08 Score=77.54 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=39.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH---hcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL---KKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~---~~~~~v~li~~D 138 (190)
.++++...++++++++|||||||||+++.|++.+. +..+++.+.+.+
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~ 73 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEE
Confidence 35567778899999999999999999999999988 677777765544
No 172
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=7.4e-08 Score=78.17 Aligned_cols=48 Identities=23% Similarity=0.132 Sum_probs=40.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|.+++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~ 65 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI 65 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEh
Confidence 455677788999999999999999999999999988888887655443
No 173
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=6.1e-08 Score=81.38 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=40.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA 74 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 45667778899999999999999999999999998877878765544
No 174
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.46 E-value=5.9e-08 Score=78.57 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=40.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.+++++..+++++++|+|||||||||+++.|++.+.+..++|.+.+.+
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 85 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV 85 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 346677888999999999999999999999999988887877765443
No 175
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=6.6e-08 Score=75.17 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...++++++++||||+||||+++.|++.+.+..+++.+.+.+.
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 64 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI 64 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 455677788999999999999999999999999888888887766554
No 176
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=7.6e-08 Score=83.25 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=42.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++|+|||||||||+++.|++...+..+++.+-+.+..
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 71 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT 71 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 4566778889999999999999999999999999998888887766654
No 177
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.46 E-value=8.7e-08 Score=75.30 Aligned_cols=41 Identities=27% Similarity=0.190 Sum_probs=35.5
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
+..+++++++++|||||||||+++.|++.+.+..++|.+.+
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 60 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG 60 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC
Confidence 45578899999999999999999999999988888777644
No 178
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.46 E-value=7.3e-08 Score=75.20 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++||||+||||+++.|++.+.+..+++.+-+.+.
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 66 (178)
T cd03247 19 KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV 66 (178)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEH
Confidence 456677889999999999999999999999999988888887655443
No 179
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.46 E-value=7.1e-08 Score=77.31 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=40.6
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.|.
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 62 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH 62 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 45677788999999999999999999999999988888887765554
No 180
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=7.8e-08 Score=80.02 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i 73 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI 73 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Confidence 456677789999999999999999999999999988878887765554
No 181
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.45 E-value=7.1e-08 Score=78.65 Aligned_cols=47 Identities=23% Similarity=0.184 Sum_probs=39.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++..++|++++|+|+|||||||+++.|++.+.+..+++.+.+.+
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 84 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE
Confidence 45677788999999999999999999999999988877777665443
No 182
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.45 E-value=6.7e-08 Score=80.33 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=41.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP 72 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 4567788899999999999999999999999999888888877655543
No 183
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.45 E-value=7.6e-08 Score=72.91 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=37.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+++++..++|++++++||||+||||+++.|++.+.+..+++.+
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 3556777889999999999999999999999999887776654
No 184
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.45 E-value=8e-08 Score=83.17 Aligned_cols=49 Identities=20% Similarity=0.073 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++|+|||||||||++++|++...+..++|.+.+.+..
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT 69 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 3556777889999999999999999999999999988888887766653
No 185
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.44 E-value=1e-07 Score=76.94 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=40.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+||||+||||+++.|++.+.+..++|.+-+.+.
T Consensus 31 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 78 (226)
T cd03248 31 QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI 78 (226)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCch
Confidence 455677788999999999999999999999999988878777665443
No 186
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=7.2e-08 Score=80.45 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=41.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 66 (275)
T PRK13639 19 KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI 66 (275)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 456778889999999999999999999999999988888887765553
No 187
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=8.6e-08 Score=77.81 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=40.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 63 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDH 63 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeec
Confidence 45677788999999999999999999999999988888887765543
No 188
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.2e-07 Score=77.78 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=38.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+. +..++|.+.+.+.
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 45667778899999999999999999999999864 3566776655443
No 189
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1e-07 Score=78.25 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=39.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+ ..++|.+-+.+.
T Consensus 21 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 21 KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 456777889999999999999999999999999875 367777655554
No 190
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=7.8e-08 Score=80.84 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=42.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++++...+|++++|+|||||||||+++.|++.+.+..+++.+-+.+.
T Consensus 22 l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 70 (288)
T PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70 (288)
T ss_pred eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 3466778889999999999999999999999999988888887766654
No 191
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=8.7e-08 Score=78.90 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|.+++|+|+|||||||+++.|++.+.+..+++.+.+.+.
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI 66 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh
Confidence 456677788999999999999999999999999888888887765543
No 192
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.43 E-value=1.1e-07 Score=75.58 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=37.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+++++..++|++++++||||+||||+++.+++.+.+..++|.+
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~ 64 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV 64 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEE
Confidence 4566778899999999999999999999999999887776643
No 193
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.43 E-value=1.1e-07 Score=76.44 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=39.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++++..++|++++|+||||+||||+++.|++.+.+..++|.+-+.+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 64 (218)
T cd03290 18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKN 64 (218)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcc
Confidence 45667778899999999999999999999999998877878765443
No 194
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.43 E-value=8.2e-08 Score=79.09 Aligned_cols=48 Identities=21% Similarity=0.116 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+||||+||||+++.|++.+.+..+++.+-+.+.
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 65 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL 65 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEc
Confidence 456677789999999999999999999999999988888887765554
No 195
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=1.2e-07 Score=77.01 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=40.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|+||+||||+++.|++.+.+..++|.+.+.+.
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 64 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 455677788999999999999999999999999988888777655444
No 196
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.5e-07 Score=77.19 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=40.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~~ 140 (190)
+++++...+|++++++|||||||||+++.|++.+.+ ..++|.+.+.+..
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 456777889999999999999999999999999863 4677777665554
No 197
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.43 E-value=9.8e-08 Score=76.68 Aligned_cols=47 Identities=17% Similarity=0.067 Sum_probs=39.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++++...+|++++++|+||+||||+++.|++.+.+..+++.+-+.+
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 74 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKT 74 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEE
Confidence 45667788999999999999999999999999998877777665443
No 198
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.3e-07 Score=79.15 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=40.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcC---CcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN---WKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~---~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+.. ++|.+-+.+..
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 24 NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT 75 (282)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECC
Confidence 45667778899999999999999999999999997764 67776655543
No 199
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.42 E-value=9.6e-08 Score=78.79 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=35.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..+++.
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~ 62 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK 62 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 456677889999999999999999999999999887666543
No 200
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=1.1e-07 Score=76.25 Aligned_cols=46 Identities=17% Similarity=0.030 Sum_probs=39.4
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++ ++++++|||||||||+++.|++.+.+..++|.+-+.+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 61 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL 61 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec
Confidence 55677778 99999999999999999999999988888887765554
No 201
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.42 E-value=1e-07 Score=76.78 Aligned_cols=46 Identities=15% Similarity=0.064 Sum_probs=38.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
.++++...+|++++++||||+||||+++.|++.+.+..++|.+.+.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~ 62 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 3556777889999999999999999999999998877777765443
No 202
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.42 E-value=1.1e-07 Score=78.19 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=39.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh----cCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK----KNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~----~~~~v~li~~D 138 (190)
+++++...+|++++|+|+|||||||+++.|++.+.+ ..++|.+.+.+
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~ 70 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCee
Confidence 456677889999999999999999999999999877 66777665444
No 203
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.42 E-value=1.4e-07 Score=75.28 Aligned_cols=48 Identities=23% Similarity=0.108 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|+||+||||+++.|++.+.+..+++.+-+.+.
T Consensus 25 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 72 (207)
T cd03369 25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI 72 (207)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEh
Confidence 456677788999999999999999999999999988888887766554
No 204
>PLN02796 D-glycerate 3-kinase
Probab=98.42 E-value=2.4e-06 Score=73.59 Aligned_cols=47 Identities=32% Similarity=0.320 Sum_probs=40.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAY 145 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~ 145 (190)
.++.+++|+|++||||||++..|...+...+.++..+..|.|.....
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~ 144 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAA 144 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchh
Confidence 35789999999999999999999999987777888899998876443
No 205
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1e-07 Score=79.03 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 71 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh
Confidence 456677789999999999999999999999999988888887665554
No 206
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.41 E-value=1.2e-07 Score=75.18 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=41.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li~~D~ 139 (190)
.++++..+++++++++||||+||||+++.|++.+ .+..+++.+.+.+.
T Consensus 26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75 (194)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC
Confidence 4566777889999999999999999999999999 88888887765554
No 207
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.1e-07 Score=80.60 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=41.6
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
..++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.|
T Consensus 23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~ 70 (305)
T PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKD 70 (305)
T ss_pred eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEecee
Confidence 345677888999999999999999999999999998888888776544
No 208
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.5e-07 Score=78.11 Aligned_cols=48 Identities=23% Similarity=0.120 Sum_probs=40.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+ ..++|.+.+.+.
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence 456778889999999999999999999999999864 567787766554
No 209
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1e-07 Score=79.84 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++|+||||+||||+++.|++.+.+..+++.+.+.|.
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI 70 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 456677789999999999999999999999999988888888776665
No 210
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.41 E-value=2.6e-07 Score=72.34 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=55.9
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCcccc
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHN 172 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~~ 172 (190)
.+++..++++.+++|||+||||||++..+|+.-.+.++.|.+.+.+.+...-.......++ ++.+..+....-+.+..
T Consensus 28 ~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~--~vGfVFQSF~Lip~ltA 105 (228)
T COG4181 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRAR--HVGFVFQSFHLIPNLTA 105 (228)
T ss_pred cceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcc--ceeEEEEeeeccccchh
Confidence 4556778899999999999999999999999999999999999999887653222222233 34444444444444443
No 211
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1e-07 Score=80.19 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=41.8
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI 71 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 3466778889999999999999999999999999988888887766554
No 212
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.2e-07 Score=79.34 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=42.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++|+|+|||||||+++.|++.+.+..++|.+-+.+..
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~ 75 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS 75 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecc
Confidence 4566778899999999999999999999999999988888877665543
No 213
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.40 E-value=3.7e-07 Score=73.00 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=35.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.+++.+++|+|||||||||+++.|+..+.. ..+.++..|.|.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccccc
Confidence 356899999999999999999999998864 457778888764
No 214
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.4e-07 Score=75.17 Aligned_cols=67 Identities=18% Similarity=0.095 Sum_probs=50.9
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSK 164 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~ 164 (190)
.+++..++|++.++.|||||||||++..|++.- ....++|.+-+.|..-....|. | +.|+....|++
T Consensus 22 gvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER----A-r~GifLafQ~P 90 (251)
T COG0396 22 GVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER----A-RAGIFLAFQYP 90 (251)
T ss_pred CcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH----H-hcCCEEeecCC
Confidence 566788899999999999999999999999975 5568889999988765554442 1 44554444443
No 215
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.2e-07 Score=81.08 Aligned_cols=49 Identities=18% Similarity=0.080 Sum_probs=42.6
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++++..++|++++|+|+|||||||+++.|++.+.+..++|.+-+.+.
T Consensus 42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~ 90 (320)
T PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYI 90 (320)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEc
Confidence 3466778889999999999999999999999999998888888776554
No 216
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=1.3e-07 Score=77.03 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=40.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+||||+||||+++.|++.+.+..++|.+.+.+.
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~ 63 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence 355677788999999999999999999999999988878777665544
No 217
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.40 E-value=1.2e-07 Score=82.80 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++|+|||||||||++++|++...+..++|.+-+.+..
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT 79 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3566777889999999999999999999999999988888888776654
No 218
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.40 E-value=1.4e-07 Score=76.98 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=39.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~ 64 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA 64 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 355677789999999999999999999999999888777776655443
No 219
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.39 E-value=1.2e-07 Score=78.07 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=41.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++|+|+||+||||+++.|++.+.+..+++.+.+.+.
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 69 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI 69 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 456777889999999999999999999999999988888887765543
No 220
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.1e-07 Score=82.75 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i 67 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 356677788999999999999999999999999988888887765554
No 221
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.39 E-value=1.3e-07 Score=78.67 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=37.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
.++++..++|++++|+|||||||||++++|++.+.+..++|.+.
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 45677888999999999999999999999999998877766543
No 222
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.39 E-value=1.7e-07 Score=74.62 Aligned_cols=50 Identities=22% Similarity=0.154 Sum_probs=41.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li~~D~~r 141 (190)
+++++...+|++++++|+||+||||+++.|++.. .+..+++.+.+.+..+
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 4567788899999999999999999999999984 5677888877666544
No 223
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.7e-07 Score=76.88 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=39.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|+|||||||+++.|++.+. +..++|.+.+.+.
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence 35567778899999999999999999999999886 2467777665554
No 224
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.39 E-value=5.6e-07 Score=71.88 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=35.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++.+|+|+|++||||||+++.|+..+ .+..+.+++.|.|.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 467899999999999999999999998 34678889999874
No 225
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.8e-07 Score=77.26 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=39.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|||||||||+++.|++.+. +..++|.+-+.+.
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 45667788999999999999999999999999886 3467777665554
No 226
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.7e-07 Score=80.26 Aligned_cols=53 Identities=21% Similarity=0.083 Sum_probs=43.9
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh----cCCcEEEEeccCCChh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK----KNWKACLVCADTFRAG 143 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~----~~~~v~li~~D~~r~~ 143 (190)
.+++++..++|++++|+|+|||||||+++.|++.+.+ ..++|.+-+.|.....
T Consensus 23 l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~ 79 (326)
T PRK11022 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79 (326)
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC
Confidence 3467788899999999999999999999999998863 5677888777765443
No 227
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.39 E-value=1.2e-07 Score=82.14 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=42.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..+++.+.+.|..
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 67 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS 67 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 4566777889999999999999999999999999888888887766653
No 228
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.5e-07 Score=77.55 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=39.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+ ..++|.+.+.+.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 456677788999999999999999999999998863 467777765554
No 229
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.38 E-value=2e-07 Score=81.50 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=41.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
..++++..++|++++|+|||||||||++++|++.+.+..++|.+-+.
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~ 86 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDG 86 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence 35677888899999999999999999999999999998898877653
No 230
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.38 E-value=4.8e-07 Score=73.04 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=53.4
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKAR 156 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~ 156 (190)
.+++...++.++.++|.|||||||++..+++.+.+.+++|.+.+.|+-+.+........++-+.
T Consensus 24 ~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQ 87 (263)
T COG1101 24 GLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQ 87 (263)
T ss_pred cCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhc
Confidence 3456778899999999999999999999999999999999999999988776655455554443
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.38 E-value=1.4e-07 Score=78.82 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=40.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc--------CCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK--------NWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~--------~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+. .++|.+-+.+.
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence 4566778899999999999999999999999998775 67777765554
No 232
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.38 E-value=1.5e-07 Score=81.80 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcC--CcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN--WKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~--~~v~li~~D~~ 140 (190)
+++++...++++++|+|||||||||+++.|++.+.+.. +++.+.+.+..
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT 72 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECC
Confidence 45667778899999999999999999999999998888 88887766653
No 233
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2e-07 Score=77.30 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=38.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|+|||||||+++.|++.+. +..+++.+.+.+.
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 45667778999999999999999999999999764 3556776655443
No 234
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.38 E-value=2.2e-07 Score=75.09 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=35.4
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++|++++++|+|||||||+++.|++.+.+..+++.+.+.+
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 43 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS 43 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc
Confidence 45789999999999999999999999998887877765544
No 235
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.38 E-value=1.4e-07 Score=84.89 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=42.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 69 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT 69 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 4567778899999999999999999999999999888888887766653
No 236
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.1e-07 Score=76.55 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=39.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~ 139 (190)
+++++...+|++++++|+|||||||+++.|++.+.+. .++|.+.+.+.
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI 76 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec
Confidence 4567788899999999999999999999999998753 57777655543
No 237
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.38 E-value=4.1e-07 Score=72.02 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=32.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++||+||||||++++|+..+ .++++.+++.|.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 58999999999999999999998 45678899999765
No 238
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.37 E-value=1.7e-07 Score=84.57 Aligned_cols=50 Identities=18% Similarity=0.037 Sum_probs=42.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++..++|++++|+|||||||||+++.|++.+.+..++|.+-+.+..+
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 45677788999999999999999999999999998888888776666543
No 239
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.37 E-value=1.3e-07 Score=76.09 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=40.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++++|+||+||||+++.|++.+.+..++|.+.+.+.
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 69 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQEL 69 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEh
Confidence 455677788999999999999999999999999888888887755544
No 240
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2.1e-07 Score=77.47 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=39.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|+|||||||+++.|++.+. +..++|.+-+.+.
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 93 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEc
Confidence 45677788999999999999999999999999986 3567777655554
No 241
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.2e-06 Score=77.27 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHh
Q psy4311 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIK 85 (190)
Q Consensus 6 l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 85 (190)
|.++|+..-+.|.... +++ .-++++++.+.+.+++.++-+++..++.+--. ..+.+++..+-+...+++.+
T Consensus 231 L~EQlKaIqkELG~~~--d~~---~e~~~~~~kie~~~~p~evk~k~~~El~kL~~----m~~~SaE~~ViRnYlDwll~ 301 (782)
T COG0466 231 LREQLKAIQKELGEDD--DDK---DEVEELREKIEKLKLPKEAKEKAEKELKKLET----MSPMSAEATVIRNYLDWLLD 301 (782)
T ss_pred HHHHHHHHHHHhCCCc--cch---hHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHHHh
Confidence 4556666666665433 111 23578888899999999988888888865322 12333444455555555554
Q ss_pred h------------------cCCCCcccC---------------CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcE
Q psy4311 86 L------------------VDPGVKAHQ---------------PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132 (190)
Q Consensus 86 ~------------------l~~~~~~~~---------------~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v 132 (190)
+ ++..+..+. ...-+|.++||+||||+|||++.+.+|..+...-.++
T Consensus 302 lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 302 LPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred CCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 3 222211110 1334678999999999999999999999997655555
Q ss_pred EEEec
Q psy4311 133 CLVCA 137 (190)
Q Consensus 133 ~li~~ 137 (190)
.+-+.
T Consensus 382 sLGGv 386 (782)
T COG0466 382 SLGGV 386 (782)
T ss_pred ecCcc
Confidence 55444
No 242
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.37 E-value=1.3e-07 Score=81.72 Aligned_cols=47 Identities=21% Similarity=0.062 Sum_probs=40.0
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|++++|+|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i 61 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL 61 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 45667788999999999999999999999999988888887765554
No 243
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2.2e-07 Score=76.25 Aligned_cols=48 Identities=15% Similarity=0.035 Sum_probs=39.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++++|+|||||||+++.|++.+.+ ..++|.+.+.+.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence 456677788999999999999999999999998763 457777765554
No 244
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=1.7e-07 Score=78.31 Aligned_cols=48 Identities=19% Similarity=0.101 Sum_probs=41.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|+||+||||+++.|++.+.+..++|.+.+.+.
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 71 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 (277)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 456677789999999999999999999999999998888887766554
No 245
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2e-07 Score=77.56 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=39.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+. +..++|.+-+.+.
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 45677888999999999999999999999999876 3567777655443
No 246
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.36 E-value=1.8e-07 Score=77.72 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..++|.+-+.+..
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA 77 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 4567778889999999999999999999999998888888877655543
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.36 E-value=1.7e-07 Score=76.79 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=38.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHH--HHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYH--YLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~--~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|+|||||||+++.|++. +.+..+++.+-+.+.
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 456677788999999999999999999999997 356677777655443
No 248
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.36 E-value=3.2e-07 Score=82.30 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=40.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|||||||||+++.|++.+.+..+++.+.+.+.
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence 456677789999999999999999999999999988878886644443
No 249
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2.3e-07 Score=76.03 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=38.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++|+||||+||||+++.|++.+.+ ..+++.+-+.+.
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 456677888999999999999999999999998763 556776655444
No 250
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.35 E-value=2e-07 Score=76.95 Aligned_cols=49 Identities=16% Similarity=0.022 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++++|+||+||||+++.|++.+.+..++|.+-+.+..
T Consensus 38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~ 86 (257)
T cd03288 38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS 86 (257)
T ss_pred eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhh
Confidence 4566777899999999999999999999999999888888887665543
No 251
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.35 E-value=6.2e-07 Score=74.10 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=34.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++..+|+|.||||+||||++..|+..+...|.+|.+++.|.-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 346799999999999999999999999999999999999974
No 252
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2.6e-07 Score=83.33 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=41.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+..+++.+-+.+.
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC
Confidence 456677788999999999999999999999999988888888766554
No 253
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.35 E-value=1.9e-07 Score=76.73 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=40.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++...+|++++|+|||||||||+++.|++.+.. .+++.+.+.|..+
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~ 61 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEA 61 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCc
Confidence 456777889999999999999999999999998754 6778776666543
No 254
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.35 E-value=2.1e-07 Score=78.21 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=37.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.+++++...+|++++|+|+|||||||+++.|++.+.+..++|.+
T Consensus 53 L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i 96 (282)
T cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH 96 (282)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34567778899999999999999999999999998877776543
No 255
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1.8e-07 Score=84.38 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=42.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++++|||||||||+++.|++.+.+..++|.+-+.+..
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 70 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYN 70 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECC
Confidence 4667888899999999999999999999999999888888877665543
No 256
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.8e-07 Score=76.02 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=38.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH--h---cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL--K---KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~--~---~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+. + ..++|.+.+.+.
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 45667788999999999999999999999999886 2 356776655544
No 257
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=3.2e-07 Score=75.14 Aligned_cols=49 Identities=20% Similarity=0.106 Sum_probs=39.2
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.+++++...+|++++++||||+||||+++.|++.+.+ ..+++.+.+.+.
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence 3456778889999999999999999999999998874 256676655443
No 258
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.34 E-value=1.7e-07 Score=80.97 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=40.2
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|++++|+|||||||||+++.|++.+.+..+++.+-+.+.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~ 62 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVL 62 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 45677788999999999999999999999999988888887765543
No 259
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.34 E-value=2.2e-07 Score=76.00 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=40.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.. .+..+++.+-+.+..
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 4566777889999999999999999999999984 466777776655543
No 260
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.4e-07 Score=75.84 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=39.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH---hcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL---KKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~---~~~~~v~li~~D~~ 140 (190)
+++++...+|++++|+|||||||||+++.|++.+. +..++|.+.+.|..
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~ 70 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecc
Confidence 45667778899999999999999999999999874 45677776655543
No 261
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.9e-07 Score=78.86 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=43.0
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH----hcCCcEEEEeccCCChh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL----KKNWKACLVCADTFRAG 143 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~----~~~~~v~li~~D~~r~~ 143 (190)
..++++...+|++++|+|+|||||||+++.|++.+. +..++|.+-+.|..+..
T Consensus 23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 346678888999999999999999999999999885 35677877776765443
No 262
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=2.9e-07 Score=75.47 Aligned_cols=48 Identities=21% Similarity=0.121 Sum_probs=38.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+ ..++|.+-+.+.
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 456677889999999999999999999999998652 356776655544
No 263
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.33 E-value=2.5e-07 Score=83.40 Aligned_cols=48 Identities=23% Similarity=0.133 Sum_probs=43.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++|...+|+++++||.+||||||+++.|+++..+.++.+.+.+.|
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 345677888999999999999999999999999999999999998887
No 264
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.33 E-value=3.7e-07 Score=75.16 Aligned_cols=37 Identities=27% Similarity=0.201 Sum_probs=31.9
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
..+|++++|+|||||||||+++.|++.+.+..++|.+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~ 58 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 4578999999999999999999999998877665543
No 265
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=2.2e-07 Score=81.17 Aligned_cols=48 Identities=21% Similarity=0.120 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|||||||||+++.|++...+..+++.+-+.+.
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i 83 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 355677788999999999999999999999999988888887766554
No 266
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.33 E-value=6.2e-07 Score=73.43 Aligned_cols=50 Identities=20% Similarity=0.050 Sum_probs=42.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++..++++-.+++|||||||||+++.+++.+.+..+.+.+.+.-..+
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~ 97 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK 97 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence 45678889999999999999999999999999998877778877655433
No 267
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.33 E-value=2.9e-07 Score=75.23 Aligned_cols=48 Identities=21% Similarity=0.100 Sum_probs=42.1
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.+++++...+|++++++|++||||||+++.|+++.++..++|.+-+..
T Consensus 23 l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~ 70 (252)
T COG1124 23 LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKP 70 (252)
T ss_pred hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcc
Confidence 346678889999999999999999999999999999988888777644
No 268
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.33 E-value=2.6e-07 Score=79.24 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=44.6
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc---CCcEEEEeccCCChh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK---NWKACLVCADTFRAG 143 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~---~~~v~li~~D~~r~~ 143 (190)
.+++++...+|++++|+|+|||||||+++.|++.+.+. .++|.+-+.|..+..
T Consensus 32 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 34567888899999999999999999999999999774 788888777776544
No 269
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=2.8e-07 Score=76.52 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=38.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+. +..++|.+.+.+.
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 45667788999999999999999999999999885 3567776655443
No 270
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=3.2e-07 Score=75.36 Aligned_cols=48 Identities=21% Similarity=0.116 Sum_probs=38.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH--h---cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL--K---KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~--~---~~~~v~li~~D~ 139 (190)
+++++...+|++++++|+|||||||+++.|++.+. + ..++|.+-+.+.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 45667778999999999999999999999999875 3 356777665554
No 271
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=2.8e-07 Score=78.96 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=45.3
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
.+++++...+|++++|+|+|||||||+++.|++.+.+..++|.+-+.|..+..
T Consensus 31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 34567788899999999999999999999999999888888988877766543
No 272
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=2.9e-07 Score=75.44 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=38.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~ 139 (190)
+++++...+|++++|+||||+||||+++.|++.+.+. .++|.+-+.+.
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73 (252)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEc
Confidence 4566778899999999999999999999999998653 46676654443
No 273
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=2.8e-07 Score=76.38 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=40.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
+++++..++|++++++|+||+||||+++.|++.+.+ ..++|.+.+.|.
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 456778889999999999999999999999999865 467777766554
No 274
>KOG0058|consensus
Probab=98.32 E-value=3.9e-07 Score=83.94 Aligned_cols=49 Identities=24% Similarity=0.187 Sum_probs=44.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++++.++|+++++|||+|+||||.+..|-+.|.|.+++|.+.+.|.-
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh
Confidence 3466778899999999999999999999999999999999999888863
No 275
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.32 E-value=6.4e-07 Score=69.62 Aligned_cols=43 Identities=33% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|.+++|.|++||||||+++.|+..+...+..+.+++.|.+|
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 4678999999999999999999999998776677788777654
No 276
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.32 E-value=3.1e-07 Score=83.08 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|+.++++||+||||||+++.|++.+.+..+++.+.+.|..
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS 400 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 3455666789999999999999999999999999998888887776653
No 277
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=2.9e-07 Score=75.55 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=39.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~ 139 (190)
.++++...+|.+++|+||||+||||+++.|++.+.+. .++|.+-+.+.
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEc
Confidence 4556777889999999999999999999999998765 46676655443
No 278
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3.1e-07 Score=76.44 Aligned_cols=49 Identities=18% Similarity=0.094 Sum_probs=39.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~~ 140 (190)
.++++...+|++++++|||||||||+++.|++.+.+ ..+++.+.+.|..
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 456677789999999999999999999999998763 5677776655543
No 279
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.32 E-value=2.8e-07 Score=79.12 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=44.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.++++...+|++++|+|+|||||||+++.|++.+.+..++|.+-+.|....
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~ 88 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM 88 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC
Confidence 466788889999999999999999999999999988888898877776544
No 280
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.32 E-value=2.8e-07 Score=76.14 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=40.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc---CCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK---NWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~---~~~v~li~~D~~ 140 (190)
.++++...+|++++|+|||||||||+++.|++.+.+. .++|.+.+.+..
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence 4566777889999999999999999999999998764 367777665543
No 281
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.31 E-value=1e-07 Score=75.85 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=46.0
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe-ccCCChh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC-ADTFRAG 143 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~-~D~~r~~ 143 (190)
.+++++...+|+.-+++|||||||||++..+.+.-.++.++|.+-+ .|..+..
T Consensus 21 ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC
Confidence 3466788899999999999999999999999999999988998887 6766654
No 282
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.31 E-value=2.8e-07 Score=75.56 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=42.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++++.++++|+|||||||+++.+++.+.+..+.|.+-+.++.
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~ 69 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence 4566778889999999999999999999999999999888866665543
No 283
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.31 E-value=5.3e-07 Score=71.19 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=42.6
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++...+.+++++++||+||||||++..+|+...+..+.+.+.+.|.-.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~ 65 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA 65 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCc
Confidence 445678899999999999999999999999999999999998888644
No 284
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=2.3e-07 Score=73.39 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=37.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li~~D 138 (190)
+++++...++++++++||||+||||+++.|++.+ .+..+++.+.+.+
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~ 72 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRP 72 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEe
Confidence 4556777889999999999999999999999864 3556667665444
No 285
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=4.8e-07 Score=75.02 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=38.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|+||+||||+++.|++.+.+ ..++|.+-+.+.
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 79 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL 79 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEc
Confidence 456778889999999999999999999999998752 456676654443
No 286
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.31 E-value=1e-06 Score=73.98 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=40.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.+...++++.|+|||||||++-+|...|...|++|.+++.|.-+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 35677999999999999999999999999999999999999754
No 287
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.30 E-value=3.5e-07 Score=82.12 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=42.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECC
Confidence 4567778899999999999999999999999999888888877666653
No 288
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=2.8e-07 Score=76.02 Aligned_cols=47 Identities=26% Similarity=0.156 Sum_probs=38.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D 138 (190)
.++++...+|++++|+|+|||||||+++.|++.+.+ ..++|.+-+.+
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED 80 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE
Confidence 456778889999999999999999999999998763 46667664444
No 289
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=2.8e-07 Score=70.32 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=39.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++...++++++|+|+||+||||+++.|++.+.+..+++.+-+.+.
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~ 63 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI 63 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc
Confidence 44566778899999999999999999999999988778787665543
No 290
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.30 E-value=9.7e-07 Score=70.15 Aligned_cols=43 Identities=33% Similarity=0.400 Sum_probs=37.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|.+++|+|++||||||+++.|+..+...+..+.+++.|.+|
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 5688999999999999999999999998777777788888755
No 291
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.29 E-value=1.6e-06 Score=76.31 Aligned_cols=49 Identities=35% Similarity=0.357 Sum_probs=42.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQ 147 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eq 147 (190)
.+|.+|+|.|++||||||++..|...+...+.++..+..|.|.....++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer 258 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQ 258 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHH
Confidence 3678999999999999999999999998777889999999988654443
No 292
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=4e-07 Score=74.71 Aligned_cols=47 Identities=21% Similarity=0.082 Sum_probs=37.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D 138 (190)
.++++...+|++++|+|+|||||||+++.|++... +..++|.+.+.+
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 45677788999999999999999999999999875 245667664433
No 293
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=6e-07 Score=72.38 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=55.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccCCChh--HHHHHHHHhhhcCCceeecCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADTFRAG--AYDQLKQNATKARIPFYGSSK 164 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~~r~~--a~eql~~~~~~~~i~~~~~~~ 164 (190)
+++++..++..|.+|+||+|+||||+++++-+..... .++|.+.+.|+|... ..+ +.++.|+ ..+.+
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~----lRr~vGM--VFQkP 97 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE----LRRRVGM--VFQKP 97 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH----HHHHhee--eccCC
Confidence 4567788889999999999999999999998876432 367888888988753 222 2334454 33332
Q ss_pred CCCCcccccCceeeC
Q psy4311 165 GKRNPIHNMGLSLIP 179 (190)
Q Consensus 165 ~~~~~l~~~~lvlid 179 (190)
...+++.+|.|..+
T Consensus 98 -nPFp~SIydNVayG 111 (253)
T COG1117 98 -NPFPMSIYDNVAYG 111 (253)
T ss_pred -CCCCchHHHHHHHh
Confidence 23346666666433
No 294
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.29 E-value=4.6e-07 Score=81.62 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=41.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i 316 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 456677788999999999999999999999999988888888766554
No 295
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=3.6e-07 Score=75.55 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=35.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
.++++...+|++++++|||||||||+++.|++.+.+..++|.
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~ 68 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK 68 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCcee
Confidence 456677788999999999999999999999999887665443
No 296
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.28 E-value=4.2e-07 Score=82.12 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++...+|.+++|+|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEIN 328 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECC
Confidence 4566777889999999999999999999999998888888877665543
No 297
>COG4240 Predicted kinase [General function prediction only]
Probab=98.28 E-value=2.3e-06 Score=69.68 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=48.6
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcC-CcEEEEeccCCChhHHHHHHHH
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN-WKACLVCADTFRAGAYDQLKQN 151 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~-~~v~li~~D~~r~~a~eql~~~ 151 (190)
...+.|.+++|.||.||||||++..|-..+..+| .++.-.+.|.|+....+|++..
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La 101 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLA 101 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHH
Confidence 3456689999999999999999999999998887 5899999999988877777653
No 298
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.28 E-value=3e-07 Score=82.79 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=40.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++++|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~ 317 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI 317 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEEC
Confidence 455677788999999999999999999999999988888887765543
No 299
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.28 E-value=5.3e-07 Score=75.52 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=41.9
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.+++++...+|++++|+|+||+||||+++.|++.+. ..+++.+-+.|+.+
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS 69 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhh
Confidence 356678888999999999999999999999999987 56778776666543
No 300
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.28 E-value=7.2e-07 Score=73.99 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=45.9
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
..+++|...+|+++++||.+|+||||+.+.+.++..+.+++|.+-+.|...
T Consensus 29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79 (268)
T ss_pred ecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence 356788899999999999999999999999999999999999999888643
No 301
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.28 E-value=4.2e-07 Score=81.63 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=42.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++...+|++++|+|||||||||+++.|++.+++..++|.+-+.|..+
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINN 314 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCC
Confidence 44566778899999999999999999999999998888888876666543
No 302
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=3.4e-07 Score=82.50 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=40.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh--cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK--KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~--~~~~v~li~~D~ 139 (190)
+++++...+|++++++|||||||||+++.|++.+.+ ..++|.+.+.+.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 456778889999999999999999999999999875 577887766654
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.27 E-value=4.9e-07 Score=81.42 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=42.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+-+.|..
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~ 69 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR 69 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 4567788899999999999999999999999999888888887666653
No 304
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=4.9e-07 Score=75.44 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=38.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+ ..++|.+.+.+.
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 456677889999999999999999999999998752 356676655554
No 305
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=4e-07 Score=76.46 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=39.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+. +..++|.+.+.+.
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 45677788999999999999999999999999876 3567776655443
No 306
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.26 E-value=4.7e-07 Score=74.22 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=37.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH--h---cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL--K---KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~--~---~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++... + ..++|.+.+.+.
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 45667778899999999999999999999999743 4 356776655444
No 307
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=3.8e-07 Score=84.60 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=37.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.++++...+|.+++|+|||||||||+++.|++.+.+..+.|.+
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4667788899999999999999999999999988877777765
No 308
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.26 E-value=1.3e-06 Score=66.66 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=35.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++|++|+||||++.+++.++.+.++++.++++|..+
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 478999999999999999999999999999999999643
No 309
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=5e-07 Score=74.74 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=38.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D 138 (190)
+++++..++|++++++|+||+||||+++.|++.+.+. .+++.+.+.|
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE
Confidence 4567788899999999999999999999999998764 4566665544
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.25 E-value=4.4e-07 Score=82.82 Aligned_cols=43 Identities=23% Similarity=0.036 Sum_probs=37.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.++++..++|.+++|+|||||||||+++.|++.+.+..++|.+
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~ 66 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4667888899999999999999999999999998876666543
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=4.7e-07 Score=82.09 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=37.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+++++...+|.+++|+|||||||||+++.|++.+.+..+++.+
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4567788899999999999999999999999998876666654
No 312
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=5.8e-07 Score=74.20 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=38.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
+++++...+|++++|+|+|||||||+++.|++.+.+ ..++|.+.+.+.
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI 76 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEec
Confidence 456677789999999999999999999999998864 246676655443
No 313
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=5.1e-07 Score=76.51 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=39.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-----hcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-----KKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~~~v~li~~D~~ 140 (190)
.++++...+|++++|+|+|||||||+++.|++.+. +..++|.+.+.+..
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 45667778999999999999999999999999875 35677777655543
No 314
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=4e-07 Score=82.05 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=40.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-hcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+. +..++|.+.+.|.
T Consensus 279 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~ 327 (506)
T PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV 327 (506)
T ss_pred cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEEC
Confidence 44667778999999999999999999999999987 4778887766554
No 315
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=5.1e-07 Score=75.84 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=37.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH--h---cCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL--K---KNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~--~---~~~~v~li~~D 138 (190)
.++++...+|++++|+|||||||||+++.|++... + ..++|.+.+.+
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~ 107 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED 107 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEE
Confidence 45667788999999999999999999999999754 2 56777665444
No 316
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=5.9e-07 Score=73.69 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=38.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH---Hh--cCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY---LK--KNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~---~~--~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.. .+ ..+++.+-+.+..
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 4566777889999999999999999999999863 22 3567776655543
No 317
>PRK07667 uridine kinase; Provisional
Probab=98.25 E-value=2.2e-06 Score=67.98 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=38.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
...+|++.|++||||||++..|+..+...+.++.+++.|.|.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 457999999999999999999999998888899999999864
No 318
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.24 E-value=7e-07 Score=73.95 Aligned_cols=36 Identities=28% Similarity=0.181 Sum_probs=33.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
..+|++++++|||||||||+++.|++.+++..++|.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 578999999999999999999999999998888875
No 319
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=7.3e-07 Score=74.49 Aligned_cols=48 Identities=23% Similarity=0.058 Sum_probs=39.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
+++++..+++++++|+||||+||||+++.|++.+.+ ..++|.+-+.+.
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 90 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEc
Confidence 456777889999999999999999999999998874 466776655443
No 320
>PRK05439 pantothenate kinase; Provisional
Probab=98.24 E-value=4.2e-06 Score=71.27 Aligned_cols=45 Identities=29% Similarity=0.273 Sum_probs=38.8
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHh--cCCcEEEEeccCCCh
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLK--KNWKACLVCADTFRA 142 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~--~~~~v~li~~D~~r~ 142 (190)
.+.+.+|++.|++||||||++..|+..+.. .+.+|.+++.|.|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 356789999999999999999999998865 356899999999853
No 321
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=7.9e-07 Score=72.88 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=38.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH--h---cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL--K---KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~--~---~~~~v~li~~D~ 139 (190)
+++++...+|++++++||||+||||+++.|++... + ..++|.+.+.+.
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 72 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDI 72 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEc
Confidence 45667778899999999999999999999999764 2 556777665543
No 322
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.23 E-value=5e-07 Score=83.56 Aligned_cols=50 Identities=18% Similarity=0.046 Sum_probs=43.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++...+|++++|+|+|||||||+++.|++.+.+..++|.+.+.|..+
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 45677788999999999999999999999999998888889887766543
No 323
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.23 E-value=1.4e-06 Score=68.39 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=36.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+|++.|++||||||++..|+..+...+.++.+++.|.|..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 5899999999999999999999988888899999998764
No 324
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=5.5e-07 Score=83.52 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=36.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.++++...+|.+++|+|||||||||+++.|++.+.+..++|.+
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 371 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 3456677889999999999999999999999998877666654
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=5.1e-07 Score=81.82 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=35.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
.++++...+|.+++++|||||||||+++.|++.+.+..++|.
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~ 377 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 345667788999999999999999999999999887666554
No 326
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.23 E-value=1.2e-06 Score=63.29 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=34.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+..++|+||+|+||||++..++..+...+..+..++++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 56899999999999999999999997665567777777543
No 327
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.23 E-value=4.5e-07 Score=84.04 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=37.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.++++..++|.+++|+|||||||||++++|++.+.+..++|.+
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 4567788899999999999999999999999998887777765
No 328
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=7.2e-07 Score=73.19 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=36.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH--h---cCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL--K---KNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~--~---~~~~v~li~~D 138 (190)
.++++...+|++++|+|+|||||||+++.|++... + ..++|.+-+.+
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 73 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence 45567778899999999999999999999999764 2 24566654444
No 329
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.22 E-value=3.9e-06 Score=66.57 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=48.1
Q ss_pred CCC-eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecC
Q psy4311 99 GKP-NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSS 163 (190)
Q Consensus 99 ~~~-~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~ 163 (190)
+.+ ..+.+.||+||||||++-++...++.+ ++++++..|.+.....+.++.. .++|.....
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~ 71 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVE 71 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEec
Confidence 344 799999999999999999999999877 8999999999986555544441 566665543
No 330
>PHA02518 ParA-like protein; Provisional
Probab=98.22 E-value=2.1e-06 Score=68.00 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.4
Q ss_pred EEEEEccC-CCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 103 VIMFVGLQ-GSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 103 vi~l~G~~-G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+|+|.++- |+||||++..||..+...|++|.++++|..+..
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~ 43 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSS 43 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh
Confidence 67888777 589999999999999999999999999987653
No 331
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.22 E-value=9.4e-07 Score=70.54 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=40.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++++...++..+.++||+|+||||+++.+|+...+..+++.+.+..
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~ 68 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRR 68 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEe
Confidence 45667778899999999999999999999999999888878776553
No 332
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.21 E-value=2e-06 Score=68.01 Aligned_cols=40 Identities=33% Similarity=0.417 Sum_probs=34.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCc----EEEEeccCCCh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWK----ACLVCADTFRA 142 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~----v~li~~D~~r~ 142 (190)
||++.||+||||||+++.|+..+...+.. +.+...|.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~ 44 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYD 44 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccccc
Confidence 69999999999999999999999877765 77888887753
No 333
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=6.7e-07 Score=73.49 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=37.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.... ..++|.+.+.+.
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 75 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI 75 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 456677789999999999999999999999997642 246666655443
No 334
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.21 E-value=2.2e-06 Score=67.01 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=42.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++...+|+.+++.||+|+||||+.+.+|.+..+..+.+.+-+.|.
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~v 67 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccc
Confidence 356678889999999999999999999999999999888888877765
No 335
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.21 E-value=1.9e-06 Score=66.25 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=33.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++|++||||||++.+|...+..+|.+|.++..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 5899999999999999999999998899999997653
No 336
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.21 E-value=5.7e-07 Score=81.30 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=38.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
.++++...+|++++|+|||||||||+++.|++.+.+..++|.+-
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 344 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEe
Confidence 34567778899999999999999999999999998888888764
No 337
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=8.1e-07 Score=73.59 Aligned_cols=45 Identities=18% Similarity=0.039 Sum_probs=36.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEe
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVC 136 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~ 136 (190)
.++++..++|++++|+|+|||||||+++.|++...+ ..++|.+.+
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 456677889999999999999999999999998763 456676643
No 338
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.21 E-value=1.1e-06 Score=80.35 Aligned_cols=49 Identities=22% Similarity=0.118 Sum_probs=41.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|+.++++||+||||||+++.|.+.+.++.+++.+.+.|..
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~ 394 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR 394 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehh
Confidence 3456667899999999999999999999999999998888988555543
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.21 E-value=6.7e-07 Score=81.51 Aligned_cols=43 Identities=26% Similarity=0.059 Sum_probs=36.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+++++..++|.+++|+|||||||||+++.|++.+.+..+.|.+
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~ 64 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4567788899999999999999999999999998776666543
No 340
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.21 E-value=7.7e-07 Score=80.05 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=40.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~ 139 (190)
.++++...+|++++++|||||||||+++.|++.+.+ ..++|.+-+.+.
T Consensus 277 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 345677788999999999999999999999999874 677887766554
No 341
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.20 E-value=9.3e-07 Score=80.80 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=40.6
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|+|||||||+++.|++.+.+..++|.+.+.|.
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 44556678999999999999999999999999999989898876664
No 342
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.20 E-value=6e-07 Score=81.35 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=40.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.++++...+|++++|+|||||||||+++.|++.+.+ ..++|.+.+.++
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 78 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence 456778889999999999999999999999999875 467777665554
No 343
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.20 E-value=9e-07 Score=69.49 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=32.2
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
.+++++..++|.+++++|||||||||+++.+.. ..+++.+.
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~ 51 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLI 51 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEEC
Confidence 346678888999999999999999999998742 34456544
No 344
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.19 E-value=9e-07 Score=80.02 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=37.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLV 135 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li 135 (190)
+++++...+|++++|+|||||||||+++.|++.+ .+..++|.+-
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 4566778889999999999999999999999986 5777777664
No 345
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.19 E-value=2.6e-06 Score=66.97 Aligned_cols=56 Identities=25% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHhhcCCC--CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 82 ELIKLVDPG--VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 82 ~l~~~l~~~--~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
.+.+..++. ..+++|..-++++.+++|.+||||||++++|+..+.+..+.|.....
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 345555553 45778888899999999999999999999999999998888887763
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.19 E-value=6.9e-07 Score=82.79 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=36.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.++++...+|.+++|+|||||||||+++.|++.+.+..++|.+
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 378 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 3456777889999999999999999999999998877666654
No 347
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.19 E-value=8.6e-07 Score=79.73 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=40.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh--cCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK--KNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~--~~~~v~li~~D~~ 140 (190)
+++++...+|++++++|||||||||+++.|++.+.+ ..++|.+.+.+..
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 456777889999999999999999999999998875 5677877665543
No 348
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.19 E-value=1.5e-06 Score=73.68 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=59.2
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCcc
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l 170 (190)
..+.++..+.|+++.+.|.+||||||+++++-++..+..++|.+-+.|..+....+ |+.+. +..+....+....-|..
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~-Lr~~R-r~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAE-LRELR-RKKISMVFQSFALLPHR 121 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHH-HHHHH-hhhhhhhhhhhccccch
Confidence 35667888999999999999999999999999999999999999999998876554 44442 22333344444444443
Q ss_pred c
Q psy4311 171 H 171 (190)
Q Consensus 171 ~ 171 (190)
+
T Consensus 122 t 122 (386)
T COG4175 122 T 122 (386)
T ss_pred h
Confidence 3
No 349
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.18 E-value=1.7e-06 Score=62.55 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=34.0
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++++..+++++++|+||+||||||++..+. .+++.+.+.|...
T Consensus 7 ~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~ 49 (107)
T cd00820 7 GVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE 49 (107)
T ss_pred eeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence 345666778999999999999999999986 4568777766543
No 350
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.18 E-value=7.2e-07 Score=82.52 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=38.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
.+++++...+|++++|+|+|||||||+++.|++.+.+..+++.+-
T Consensus 32 l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~ 76 (623)
T PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCD 76 (623)
T ss_pred EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEEC
Confidence 346678888999999999999999999999999998777777653
No 351
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.18 E-value=9.5e-07 Score=79.88 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=41.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++..++|+.++++||+|+||||+++.|++.+.+..+++.+.+.|..
T Consensus 340 ~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA 387 (529)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehh
Confidence 345566789999999999999999999999999998888888776653
No 352
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.18 E-value=7.3e-07 Score=81.37 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=36.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.++++...+|.+++|+|||||||||+++.|++.+.+..++|.+
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~ 383 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 3456777889999999999999999999999998877666654
No 353
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.17 E-value=9.2e-07 Score=79.36 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=38.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D 138 (190)
+++++...+|++++|+|||||||||+++.|++...+ ..++|.+.+.+
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~ 324 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR 324 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc
Confidence 345667788999999999999999999999996543 36778776654
No 354
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.17 E-value=1.1e-06 Score=80.52 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=40.8
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 34556678999999999999999999999999999989888877664
No 355
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.17 E-value=1.1e-06 Score=82.41 Aligned_cols=47 Identities=23% Similarity=0.195 Sum_probs=40.4
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++||||+||||+++.|++.+.+.+++|.+.+.|.
T Consensus 499 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 545 (711)
T TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL 545 (711)
T ss_pred CceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 34556678999999999999999999999999999988888776654
No 356
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.16 E-value=7.4e-07 Score=81.23 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=35.5
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
++++...+|.+++++|||||||||+++.|++.+.+..++|.+
T Consensus 340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~ 381 (552)
T TIGR03719 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381 (552)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE
Confidence 456677889999999999999999999999998776665543
No 357
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.16 E-value=4e-06 Score=65.66 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=34.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
.+.+++|+|++||||||++.+|...+...+.+|..+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 45699999999999999999999999988888888865
No 358
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.16 E-value=2.3e-06 Score=62.01 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+|+|.|++||||||+++.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999988
No 359
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.16 E-value=9.9e-07 Score=82.26 Aligned_cols=48 Identities=21% Similarity=0.076 Sum_probs=41.9
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++..++|+.++++|++||||||+++.|++.+.+..+++.+.+.|.-
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 445667789999999999999999999999999999898988777653
No 360
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.15 E-value=1.2e-06 Score=79.87 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=41.4
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++..++|+.++++||||+||||+++.|++.+.+..+++.+.+.|...
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 455667899999999999999999999999999999999887666543
No 361
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.15 E-value=9.8e-07 Score=79.97 Aligned_cols=48 Identities=21% Similarity=0.066 Sum_probs=39.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|++++|+|||||||||+++.|++.+. ..++|.+-+.+..
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 44667778999999999999999999999999885 6677877665543
No 362
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.15 E-value=1e-06 Score=80.18 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=40.4
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++..++|+.++++|||||||||+++.|++.+.+..+++.+.+.|..
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~ 388 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT 388 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence 34555789999999999999999999999999988888888777653
No 363
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.15 E-value=3.1e-06 Score=66.27 Aligned_cols=43 Identities=30% Similarity=0.466 Sum_probs=37.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|.++++.|++|+||||+++.|+..+...+..+.+++.|.+|
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 5688999999999999999999999998777777788888765
No 364
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.15 E-value=7.4e-07 Score=80.63 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=38.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
.++++...+|.+++|+|||||||||+++.|++.+.+..++|.+-+
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G 85 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 456677789999999999999999999999999988777776543
No 365
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.15 E-value=1.1e-06 Score=82.34 Aligned_cols=50 Identities=22% Similarity=0.128 Sum_probs=43.7
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
++++..++|+.++++|++||||||+++.|.+.+.+..+++.+.+.|.-..
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 34566788999999999999999999999999999999999988886443
No 366
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.15 E-value=9.8e-07 Score=82.58 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=41.2
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|++||||||+++.|++.+.+..++|.+.+.|.
T Consensus 497 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 543 (710)
T TIGR03796 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR 543 (710)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH
Confidence 45566788999999999999999999999999999989888876664
No 367
>PRK15453 phosphoribulokinase; Provisional
Probab=98.14 E-value=4.8e-06 Score=69.88 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=38.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.++.+|++.|.+||||||++..++..+...+.++.+++.|.|+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 35679999999999999999999999987777799999999874
No 368
>KOG0059|consensus
Probab=98.13 E-value=4.3e-07 Score=87.05 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=54.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC-----------------------hhHHHHH
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR-----------------------AGAYDQL 148 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r-----------------------~~a~eql 148 (190)
..+++..++++++++.|||||||||+++++.+...+.++.+.+-+.|.-. ...+|.|
T Consensus 582 ~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL 661 (885)
T KOG0059|consen 582 RGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHL 661 (885)
T ss_pred cceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHH
Confidence 35566778899999999999999999999999999999988886555421 1346888
Q ss_pred HHHhhhcCCce
Q psy4311 149 KQNATKARIPF 159 (190)
Q Consensus 149 ~~~~~~~~i~~ 159 (190)
+.+|...|++.
T Consensus 662 ~~~arlrG~~~ 672 (885)
T KOG0059|consen 662 EFYARLRGLPR 672 (885)
T ss_pred HHHHHHcCCCh
Confidence 88888888764
No 369
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.13 E-value=1.2e-06 Score=82.08 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=40.7
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|++||||||+++.|++.+.+..+++.+.+.|.
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i 538 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence 34556678999999999999999999999999999888888877664
No 370
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.13 E-value=1.3e-06 Score=79.85 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=39.4
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
++++..++|+.++++|||||||||+++.|++.+.+..+++.+.+.|
T Consensus 333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~ 378 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378 (569)
T ss_pred CeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEE
Confidence 3445667899999999999999999999999999988888776554
No 371
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.12 E-value=1.4e-06 Score=79.70 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=40.0
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++..++|+.++++||+||||||+++.|++.+ +..+++.+.+.|..
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~ 414 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELR 414 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecc
Confidence 445666789999999999999999999999999 88888888776653
No 372
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.12 E-value=3.7e-06 Score=70.08 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=36.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+|++.|++||||||++..+...+...+.++.+++.|.|+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5899999999999999999999988888899999998865
No 373
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.12 E-value=2.2e-06 Score=76.44 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=41.5
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccCCCh--hHHHHHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADTFRA--GAYDQLK 149 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~~r~--~a~eql~ 149 (190)
++++..++|++++++||+||||||+++ ++...+ .|++|.+.+.+.+.. .+.+.++
T Consensus 24 ~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR 81 (504)
T TIGR03238 24 KFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD 81 (504)
T ss_pred CCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH
Confidence 455777889999999999999999999 444444 455799988888754 3444444
No 374
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.11 E-value=1.6e-06 Score=78.74 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=39.8
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++||||+||||+++.|++.+.+..+++.+.+.|.
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i 382 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL 382 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh
Confidence 34456678999999999999999999999999998888887766554
No 375
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.11 E-value=2.7e-06 Score=64.82 Aligned_cols=40 Identities=30% Similarity=0.477 Sum_probs=34.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+++++|++||||||+++.|+..+...+.++.+++.|.+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 5789999999999999999999987777787788886653
No 376
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.11 E-value=1.4e-06 Score=79.94 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=40.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|++|+||||+++.|++.+.+.++++.+.+.|.
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 405 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence 34566678999999999999999999999999999888887766553
No 377
>PRK06762 hypothetical protein; Provisional
Probab=98.11 E-value=2.8e-06 Score=65.28 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=31.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
|.++++.|++||||||+++.|+..+ +..+.+++.|.+|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 6799999999999999999999988 3346677777665
No 378
>PLN03073 ABC transporter F family; Provisional
Probab=98.10 E-value=1.4e-06 Score=81.86 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=36.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
.++++...+|.+++|+|||||||||+++.|++.+.+..++|.
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~ 567 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence 345667788999999999999999999999999887766664
No 379
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.10 E-value=6.9e-06 Score=61.53 Aligned_cols=42 Identities=31% Similarity=0.307 Sum_probs=36.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGA 144 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a 144 (190)
++++.|+||+||||++..++......+.++.+++.+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 478999999999999999999998888999999988665433
No 380
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.10 E-value=2.1e-06 Score=78.17 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=40.7
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|++|+||||+++.|++.+.+..+++.+-+.|.
T Consensus 350 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred CeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 34556678999999999999999999999999999989888877653
No 381
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.10 E-value=3.8e-06 Score=67.88 Aligned_cols=42 Identities=29% Similarity=0.348 Sum_probs=36.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.++.+|++.|++||||||+++.|+..+... ++.+++.|.|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 346799999999999999999999999754 789999998754
No 382
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.09 E-value=2.8e-06 Score=75.89 Aligned_cols=50 Identities=20% Similarity=0.079 Sum_probs=45.0
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+++|..++|..++++||+||||||+++.|.+...+..+.|.+.++|..+.
T Consensus 354 ~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qW 403 (580)
T COG4618 354 GISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW 403 (580)
T ss_pred cceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcC
Confidence 45677788999999999999999999999999999999999999987654
No 383
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.08 E-value=1.7e-06 Score=80.87 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=40.5
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|+|||||||+++.|++.+.+..+++.+.+.|.
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l 529 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 44556678999999999999999999999999999888888776654
No 384
>PRK13409 putative ATPase RIL; Provisional
Probab=98.08 E-value=2e-06 Score=79.19 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=33.3
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
...+|++++|+||||+||||+++.|++.+.+..+++.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 4578899999999999999999999999988877774
No 385
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.08 E-value=1.9e-06 Score=79.17 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=39.8
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|||||||||+++.|++.+.+..+++.+.+.|.
T Consensus 353 ~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 34556678999999999999999999999999999888887765553
No 386
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.08 E-value=2.2e-06 Score=78.23 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=40.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++++..++|+.++++|+||+||||+++.|++.+.+..+++.+.+.|
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 34556678999999999999999999999999999888888776554
No 387
>PTZ00301 uridine kinase; Provisional
Probab=98.07 E-value=6.9e-06 Score=66.25 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=33.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhc-C-CcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKK-N-WKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~-~-~~v~li~~D~~r 141 (190)
..+|++.|++||||||++..|+..+... + ..+.++..|.|.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 3689999999999999999999887543 2 346688888875
No 388
>KOG0635|consensus
Probab=98.07 E-value=7.1e-06 Score=62.88 Aligned_cols=47 Identities=34% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
..++|-+|++.|.+||||||+++.|...+..+|......+.|..|.+
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhG 73 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHG 73 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccc
Confidence 34678999999999999999999999999999998999999987765
No 389
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=1.9e-06 Score=73.88 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=39.2
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-----cCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-----KNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-----~~~~v~li~~D~ 139 (190)
.+++++...+|++++|+|||||||||++..|++.... ..++|.+.+.|.
T Consensus 98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 3456778889999999999999999999999998752 356676655554
No 390
>KOG2878|consensus
Probab=98.06 E-value=6.5e-06 Score=65.89 Aligned_cols=53 Identities=34% Similarity=0.450 Sum_probs=45.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhc---CCcEEEEeccCCChhHHHHHHHHhh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKK---NWKACLVCADTFRAGAYDQLKQNAT 153 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~---~~~v~li~~D~~r~~a~eql~~~~~ 153 (190)
|.+++|.||.||||||++-.|-..+.++ .+++.-++.|.|...+.+|++..-+
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~ 86 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKK 86 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhh
Confidence 8899999999999999999998887654 3589999999999998888775443
No 391
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.06 E-value=2.2e-06 Score=78.54 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=40.1
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|++|+||||+++.|++.+.+..+.+.+.+.|.
T Consensus 353 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i 399 (588)
T PRK13657 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI 399 (588)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh
Confidence 34456678899999999999999999999999999888887776654
No 392
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.06 E-value=2.3e-06 Score=67.82 Aligned_cols=49 Identities=20% Similarity=0.119 Sum_probs=41.9
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+.++|.-.++..++++|.|||||||++++|++...+.++++.+.+...
T Consensus 29 V~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L 77 (267)
T COG4167 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL 77 (267)
T ss_pred ccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc
Confidence 3456677788899999999999999999999999999999887765543
No 393
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.05 E-value=1.2e-05 Score=65.53 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=39.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQL 148 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql 148 (190)
+++.++++.|+||+||||++..++..+.++|.++.+++.+.......++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 56789999999999999998777776766788888888776554444443
No 394
>PRK13409 putative ATPase RIL; Provisional
Probab=98.05 E-value=2.1e-06 Score=78.98 Aligned_cols=40 Identities=28% Similarity=0.115 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
++...+|++++++|||||||||+++.|++.+.+..+++.+
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~ 398 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP 398 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3445789999999999999999999999999887776643
No 395
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.04 E-value=4.3e-06 Score=65.83 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=29.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
..+..++++|||||||||+++.|++.+.+..+.+.+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i 58 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITI 58 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 346799999999999999999999988765554433
No 396
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.03 E-value=1.1e-05 Score=64.38 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=36.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYD 146 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~e 146 (190)
|..++++||+||||||+++.+...+.+. .++.++..|.+.....+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~~~~ 45 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQEDAE 45 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChhHHH
Confidence 4579999999999999999999988754 45888888887654333
No 397
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.03 E-value=8.9e-06 Score=61.51 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=30.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEE-EEeccC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC-LVCADT 139 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~-li~~D~ 139 (190)
+++++|+.+|||||++..|...+..+|++|. +...|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 7999999999999999999999999999988 555554
No 398
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=98.03 E-value=5.2e-06 Score=67.82 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=32.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
++++++|++||||||++.+|+..+..+|++|.++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 48999999999999999999999999999999993
No 399
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.02 E-value=6e-06 Score=72.04 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=40.5
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++....+|+++.++|.|||||||++..|.+.++|+.+.+.+.+..+
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 34556678999999999999999999999999999999888766543
No 400
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.01 E-value=9.4e-06 Score=53.83 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=26.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
++++.|++||||||+++.|+..+ .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47899999999999999999998 3455655543
No 401
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.01 E-value=4.8e-06 Score=68.37 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=34.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.|.|+|++||||||.++.|+.++...+.++.+++.|..|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 3789999999999999999999987788888888886643
No 402
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.01 E-value=1.2e-05 Score=54.92 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=30.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
++++.|..|+||||++..++..+...|.++.+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4688899999999999999999998888998776
No 403
>PRK09183 transposase/IS protein; Provisional
Probab=98.01 E-value=1.3e-05 Score=66.63 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=35.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
...+..++|+||+|+|||+++..++..+...|++|.++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 45577899999999999999999998887888889887643
No 404
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.00 E-value=3.5e-06 Score=78.80 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=40.7
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++..++|+.++++|+|||||||+++.|++.+.+..+++.+.+.|.
T Consensus 475 ~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i 521 (694)
T TIGR01846 475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521 (694)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh
Confidence 34556678999999999999999999999999999989898877664
No 405
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.00 E-value=1.5e-05 Score=73.09 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccCCCh
Q psy4311 73 RMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADTFRA 142 (190)
Q Consensus 73 ~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~~r~ 142 (190)
+..+..+.+.|.+...+ ...+|.+|+|+|++||||||+++.|+..+.. .++.+.+++.|..|.
T Consensus 371 ~f~rpeV~~iL~~~~~~-------r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~ 434 (568)
T PRK05537 371 WFSFPEVVAELRRTYPP-------RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK 434 (568)
T ss_pred hhcHHHHHHHHHHHhcc-------ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH
Confidence 34444455555555543 2345789999999999999999999999986 677788999997653
No 406
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.00 E-value=2.5e-06 Score=87.54 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=41.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++|+|||||||||+++.|++.+.+..+++.+.+.|.
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI 2003 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 345677789999999999999999999999999998888888776664
No 407
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.99 E-value=8.1e-06 Score=64.30 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=40.0
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++.....|+++=++||||+||||+++.+|+.... .++|.+.+.|.-...
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G~~l~~~~ 66 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWS 66 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCCC-CceEEECCcchhHHh
Confidence 45556678999999999999999999999998754 456888888865433
No 408
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.99 E-value=6.3e-06 Score=67.70 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=28.0
Q ss_pred EEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 106 FVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 106 l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++||+||||||.++.+..++...+.++.++..|.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 6899999999999999999999999999999996
No 409
>PF13245 AAA_19: Part of AAA domain
Probab=97.99 E-value=2.7e-05 Score=52.81 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhc----CCcEEEEeccCCChhHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKK----NWKACLVCADTFRAGAYDQLK 149 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~----~~~v~li~~D~~r~~a~eql~ 149 (190)
..++.+.||+|+||||++..+...+... +.+|.+++ |...+.+.++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a---~t~~aa~~l~ 59 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA---PTRAAADELR 59 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC---CCHHHHHHHH
Confidence 4578889999999997777777666533 55676663 3333444443
No 410
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.98 E-value=1.5e-05 Score=63.66 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=39.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLK 149 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~ 149 (190)
+.+.+++|+|++||||||++.++...+.. +.++.++..|..+....++++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~ 69 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLR 69 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHH
Confidence 45789999999999999999999987653 468999999986544444444
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.98 E-value=8.8e-06 Score=63.21 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKK 128 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~ 128 (190)
+.+++++||+||||||+++.|+..+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 3589999999999999999999987543
No 412
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.98 E-value=5.3e-06 Score=75.36 Aligned_cols=39 Identities=26% Similarity=0.175 Sum_probs=32.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW 130 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~ 130 (190)
.++++...++..|+++||||+||||+++.|++...+..+
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 345677788999999999999999999999888876533
No 413
>PRK13768 GTPase; Provisional
Probab=97.98 E-value=1.2e-05 Score=66.42 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+.++++.|++|+||||++..++.++...|.+|.+++.|..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4689999999999999999999999988999999999864
No 414
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.98 E-value=1.5e-05 Score=61.62 Aligned_cols=39 Identities=36% Similarity=0.462 Sum_probs=34.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.+++|+|++||||||++.+|...+...|.+|..+..|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 489999999999999999999999988888988876543
No 415
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.98 E-value=4.1e-06 Score=76.04 Aligned_cols=41 Identities=22% Similarity=0.145 Sum_probs=34.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v 132 (190)
++.++...+|..+++||+||+||||+++.|++...+..++|
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i 60 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence 34567778899999999999999999999999987655543
No 416
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.98 E-value=4.1e-06 Score=62.34 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=27.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+|.++|||||||||+++.++..+. ..+++.|.++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHH
Confidence 589999999999999999987764 5567777643
No 417
>KOG2355|consensus
Probab=97.97 E-value=4.9e-06 Score=66.99 Aligned_cols=55 Identities=20% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 88 DPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 88 ~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+|-..++++..+.+....++|.|||||||+++.|++...-.++.|.+.+.|.|+-
T Consensus 27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhD 81 (291)
T KOG2355|consen 27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHD 81 (291)
T ss_pred CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccc
Confidence 3445567777888999999999999999999999998776678899999999873
No 418
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.97 E-value=7.9e-05 Score=62.10 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=59.4
Q ss_pred HHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHH
Q psy4311 39 LLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTC 118 (190)
Q Consensus 39 L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~ 118 (190)
-+.-.++..-++.+..-+...+.... .-.+.+...+...++. ...+.+.+|++.|++|+||||++
T Consensus 35 ~ln~~~~l~eV~~iylpL~~l~~~~~---------~~~~~~~~~~~~~l~~------~~~~~pfIIgiaGsvavGKST~a 99 (283)
T COG1072 35 GLNEPISLDEVEDIYLPLSRLLQLYV---------EARERLFAELLRFLGT------NNQQRPFIIGIAGSVAVGKSTTA 99 (283)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhcc------CCCCCCEEEEeccCccccHHHHH
Confidence 34445666666666655544333211 1123344555555552 23456889999999999999999
Q ss_pred HHHHHHHHhcCC--cEEEEeccCCCh
Q psy4311 119 TKLAYHYLKKNW--KACLVCADTFRA 142 (190)
Q Consensus 119 ~~la~~~~~~~~--~v~li~~D~~r~ 142 (190)
..|...+...+. +|-++.+|.|-.
T Consensus 100 r~L~~ll~~~~~~~~v~lvpmDGFhy 125 (283)
T COG1072 100 RILQALLSRWPESPKVDLVTMDGFHY 125 (283)
T ss_pred HHHHHHHhhCCCCCceEEEecccccc
Confidence 999999987654 499999998743
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.97 E-value=2.1e-05 Score=55.67 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=33.0
Q ss_pred EEEEEccC-CCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQ-GSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~-G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++.|+. |+||||++..++..+..++.++.++++|..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 36677755 889999999999999988999999999965
No 420
>PRK08233 hypothetical protein; Provisional
Probab=97.97 E-value=6.6e-06 Score=63.65 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.+|++.|++||||||++..|+..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57999999999999999999999884
No 421
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.97 E-value=6.7e-06 Score=65.51 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=26.9
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+++...++ +++|+|||||||||++..|+..+.
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence 34555667 999999999999999999998764
No 422
>PLN03073 ABC transporter F family; Provisional
Probab=97.96 E-value=3.8e-06 Score=78.97 Aligned_cols=44 Identities=27% Similarity=0.207 Sum_probs=34.7
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHH---HhcCCcEEEEec
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY---LKKNWKACLVCA 137 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~---~~~~~~v~li~~ 137 (190)
+++....|..++|+|+|||||||+++.|++.. .+.++++.++..
T Consensus 196 isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 196 ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 34566789999999999999999999999753 345667776544
No 423
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.96 E-value=2.8e-05 Score=64.53 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=44.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~ 158 (190)
+++.++.+.|+||+||||++..++.....+|.++.+++.+.-..-..++++..+..+|.+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 467899999999999999999998887777889999998732212233455555555543
No 424
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.96 E-value=8.7e-06 Score=64.69 Aligned_cols=44 Identities=32% Similarity=0.493 Sum_probs=31.7
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+...|.++.+.|+|||||||++..+...+. +..+..++.|.+|.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHH
Confidence 346789999999999999999998877664 45577888999875
No 425
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.96 E-value=1.3e-05 Score=62.53 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=31.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
+|+|.|++||||||+++.|+..+...|.++..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68999999999999999999999888888866644
No 426
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.95 E-value=1.4e-05 Score=64.12 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=36.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|++.|.-|+||||++..||..+...|++|.++++|...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3688899999999999999999999999999999999654
No 427
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.95 E-value=4.2e-06 Score=77.97 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=34.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v 132 (190)
+++++..++|++++++|||||||||+++.|++.+.+.++++
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i 509 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRL 509 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 34566778899999999999999999999999987766654
No 428
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.95 E-value=6.1e-06 Score=69.93 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=46.3
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH-h----cCCcEEEEeccCCChhHH
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL-K----KNWKACLVCADTFRAGAY 145 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~-~----~~~~v~li~~D~~r~~a~ 145 (190)
.+++++...+++++++||-+|||||||+..+.+.+. + .++++.+-+.|.++....
T Consensus 21 v~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred EeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 356778889999999999999999999999999986 2 356788888888877654
No 429
>KOG0057|consensus
Probab=97.95 E-value=7e-06 Score=73.85 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=43.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+.+++..++|+-++++|+|||||||.++.|-+.+. ..+++.+.+.|..+.
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEV 418 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhh
Confidence 34677888999999999999999999999999888 678899998887543
No 430
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.95 E-value=1.4e-05 Score=61.97 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=34.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
..+++++|+.+|||||++.+|...++.+|++|..+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 4699999999999999999999999999999998844
No 431
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.95 E-value=7.8e-06 Score=82.14 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=39.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
+++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~ 446 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIND 446 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeC
Confidence 345566788999999999999999999999999999999898743
No 432
>KOG2004|consensus
Probab=97.94 E-value=7e-05 Score=69.47 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
-+|.|+||+||||+|||+..+.+|..+..+-+++.+-+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 46889999999999999999999999976555554443
No 433
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=2.7e-05 Score=64.25 Aligned_cols=100 Identities=23% Similarity=0.377 Sum_probs=68.6
Q ss_pred HHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcc----c--CCCCCCCeEEEEEc
Q psy4311 35 ICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKA----H--QPQKGKPNVIMFVG 108 (190)
Q Consensus 35 l~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~----~--~~~~~~~~vi~l~G 108 (190)
|.+.|..+|+.+++|.++.-.+.+.++.+.+ ..-..+.+++ +...+.+-..+.... | -.....|.++.+=|
T Consensus 20 L~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~--~~v~~~eir~-~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGG 96 (299)
T COG2074 20 LARSLTAAGVDPDLAYSIAIEIQEELKKEGI--RLVTKDEIRE-VYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGG 96 (299)
T ss_pred HHHHHHhcccChhHHHHHHHHHHHHHHhCCC--eEeeHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhccCCCeEEEecC
Confidence 6788999999999999999888887766543 2223344555 455555443332111 1 12335588999999
Q ss_pred cCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 109 LQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 109 ~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|+||||.+.-+|..+. - -.+++.|..|
T Consensus 97 asGVGkStIA~ElA~rLg---I-~~visTD~IR 125 (299)
T COG2074 97 ASGVGKSTIAGELARRLG---I-RSVISTDSIR 125 (299)
T ss_pred CCCCChhHHHHHHHHHcC---C-ceeecchHHH
Confidence 999999999999999983 3 2357788644
No 434
>PLN03211 ABC transporter G-25; Provisional
Probab=97.94 E-value=3.1e-06 Score=78.84 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=37.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc--CCcEEEEec
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK--NWKACLVCA 137 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~--~~~v~li~~ 137 (190)
+++++..++|++++++|||||||||+++.|++.+.+. .++|.+.+.
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~ 132 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNR 132 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCE
Confidence 4556777899999999999999999999999988653 455655443
No 435
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.93 E-value=1.5e-05 Score=65.74 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=35.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++|+++|.-|+||||++..||..+...|++|.++++|..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 367788999999999999999999999999999999975
No 436
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=9.2e-06 Score=73.47 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=42.6
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++++..++++.++++|++||||||++..|++.+.+..+++.+.+.|.
T Consensus 337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred cCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 3456777789999999999999999999999999998888888876664
No 437
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.6e-06 Score=73.48 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=43.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++...+|+-++++|++||||||++..+++.+.++.+++.+.+.++.
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~ 403 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA 403 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh
Confidence 3466777889999999999999999999999999999999999988764
No 438
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.92 E-value=3.9e-05 Score=61.05 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=38.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+++.++.+.||+|+||||++..++......+.++.+++.+.+..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~ 53 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSP 53 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCH
Confidence 56889999999999999999999998877788999999986443
No 439
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.92 E-value=5.9e-06 Score=76.84 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=43.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+++++..++|++++++||||+||||+++.|++.+.+..+++.+.+.+....
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~ 75 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL 75 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcC
Confidence 456677789999999999999999999999999988888887766665543
No 440
>KOG0056|consensus
Probab=97.92 E-value=1.6e-05 Score=71.13 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=41.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++|..++|+.+++|||+|+||||.++.|-+.+.-+.+.+.+.+.|.
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI 602 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI 602 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH
Confidence 345677789999999999999999999999999988888887777775
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.92 E-value=2.5e-05 Score=56.88 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=35.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.+..+.+.||+|+||||+++.++..+...+..+..+.+..+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 3568999999999999999999999876667787777766544
No 442
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.91 E-value=1.6e-05 Score=66.60 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=35.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++|+|+.||||||++.+|+..|..+| +|+++..|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h 39 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDT 39 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCC
Confidence 4799999999999999999999999988 8999999874
No 443
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.90 E-value=1.6e-05 Score=51.92 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
+.+..|.|+|||||||++..+...+-.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 458999999999999999999888753
No 444
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.90 E-value=4.1e-06 Score=85.97 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++...+|++++|+|||||||||+++.|++.+.+..+++.+.+.|.
T Consensus 947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI 994 (2272)
T TIGR01257 947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 446677788999999999999999999999999999888888776665
No 445
>PLN03232 ABC transporter C family member; Provisional
Probab=97.89 E-value=6.9e-06 Score=82.74 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=44.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++++..++|+.++++|++||||||++..|.+.+.+..+++.+.+.|....+
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCC
Confidence 3455666789999999999999999999999999999999988888865443
No 446
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.89 E-value=2e-05 Score=66.38 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=44.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSS 163 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~ 163 (190)
...+.++.|+|+|||||||++.++...+... .++.++..|.......+. + ...|+|.....
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~r---I-~~~g~pvvqi~ 161 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAAR---I-RATGTPAIQVN 161 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHH---H-HhcCCcEEEec
Confidence 3467899999999999999999999998755 468888888654432222 2 24566665543
No 447
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.89 E-value=9.2e-06 Score=63.90 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=30.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGA 144 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a 144 (190)
.+.|+|||||||||.+++|+..+. =+.+-..|.||.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~----i~hlstgd~~r~~~ 39 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG----LPHLDTGDILRAAI 39 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CcEEcHhHHhHhhh
Confidence 589999999999999999999952 24455577787654
No 448
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=97.88 E-value=2e-05 Score=65.75 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=36.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.+|+|+|--|+||||++..||..+...|++|.+++.|..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 368888999999999999999999999999999999975
No 449
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.88 E-value=4.8e-05 Score=61.32 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=38.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+++.++.+.|++|+||||++..++......+.++.+++++.+..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~ 64 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSP 64 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCH
Confidence 56889999999999999999999998877788999999995443
No 450
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.88 E-value=2.7e-05 Score=57.06 Aligned_cols=36 Identities=33% Similarity=0.307 Sum_probs=34.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.|.+|+||||++..++.++...+.+|.++++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999988899999999998
No 451
>KOG0055|consensus
Probab=97.87 E-value=1e-05 Score=78.64 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=42.7
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++..+.|+.+++|||+||||||++..|.+.+.|..+.|.+-+.|..-
T Consensus 372 ~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~ 419 (1228)
T KOG0055|consen 372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN 419 (1228)
T ss_pred eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh
Confidence 556778899999999999999999999999999999999888777643
No 452
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.86 E-value=1.7e-05 Score=68.43 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=35.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH-hcCCcEEEEeccCCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACLVCADTFR 141 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~li~~D~~r 141 (190)
++.|.|++||||||++..|+.++. ..|.+|.+++.|.|-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 367999999999999999999997 579999999999864
No 453
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=7.5e-06 Score=68.56 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++..+.+.+.++.|++||||||+++++++..+++.+.+.+.+.-.+
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~ 63 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV 63 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEee
Confidence 34566666899999999999999999999999998888877654333
No 454
>PLN02348 phosphoribulokinase
Probab=97.86 E-value=2.7e-05 Score=68.09 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=36.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc---------------CCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK---------------NWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~---------------~~~v~li~~D~~r 141 (190)
+.+.+|+|.|++||||||+++.|+..+... +..+.+++.|.|.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 567899999999999999999999999643 1357889999884
No 455
>PLN03130 ABC transporter C family member; Provisional
Probab=97.85 E-value=9.1e-06 Score=82.36 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=44.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++++..++|+.++++|++||||||++..|.+.+.+..++|.+.+.|.-..+
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG 1307 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC
Confidence 3456677889999999999999999999999999999999998888875443
No 456
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.85 E-value=1.8e-05 Score=62.00 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=29.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
|++++++|+||+||||+++.|++.+.. ..+..|.++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~ 38 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLH 38 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccC
Confidence 679999999999999999999998853 255666543
No 457
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.85 E-value=1.2e-05 Score=65.43 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
|.+++|+|||||||||++.+|+..+
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998553
No 458
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=97.85 E-value=2.3e-05 Score=65.09 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=35.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+|++.|--|+||||++..||..+...|++|.+++.|..
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q 39 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 68889999999999999999999999999999999953
No 459
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.85 E-value=1.3e-05 Score=64.65 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+++|+|||||||||++.++...+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 699999999999999999998543
No 460
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.85 E-value=6.8e-05 Score=61.18 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=34.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
|.+...--|+||||++..||..+..+|.+|.++++|.-+.-
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 33334445899999999999999999999999999998764
No 461
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.85 E-value=5.5e-05 Score=60.60 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=36.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.++.+.|++|+||||++..++......+.++.+++.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 56889999999999999999999999888888999998863
No 462
>PTZ00243 ABC transporter; Provisional
Probab=97.85 E-value=8.7e-06 Score=82.27 Aligned_cols=52 Identities=15% Similarity=0.030 Sum_probs=45.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++++..++|+.++++|++||||||++..|.+.+.+..+++.+.+.|.....
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG 1378 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC
Confidence 3456777899999999999999999999999999999999999888876544
No 463
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.85 E-value=8.6e-06 Score=64.41 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=48.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC---------CChhHHHHHHHHhhhcCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT---------FRAGAYDQLKQNATKARI 157 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~---------~r~~a~eql~~~~~~~~i 157 (190)
+.+++..++|.+|.++|.+||||||+++|+-.+-.+..+++.+-+... ...+...|++....++++
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m 97 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence 455677788999999999999999999999888888777776543321 223445677776666654
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.84 E-value=1.3e-05 Score=62.98 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.+++|+|||||||||+++.|+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56899999999999999999988764
No 465
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.83 E-value=1.6e-05 Score=59.87 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=29.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
++++.|++||||||+++.|+..+. ..+++.|.++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~-----~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG-----APFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC-----CEEEeCcccccH
Confidence 478999999999999999988752 346788888753
No 466
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.83 E-value=1.2e-05 Score=65.35 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHH
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTC 118 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~ 118 (190)
+++++..++|++++++|+|||||||++
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 466788899999999999999999996
No 467
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.83 E-value=4.6e-05 Score=62.67 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=37.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~ 158 (190)
+.+++++||+|+||||+++.++..+.... +.......-+....+-++..+..+|++
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~~~~~~~~~~~~~~~~l~~i~~~lG~~ 98 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQER--VVAAKLVNTRVDAEDLLRMVAADFGLE 98 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCC--eEEeeeeCCCCCHHHHHHHHHHHcCCC
Confidence 45899999999999999999998876432 322222222223445566666666665
No 468
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.83 E-value=5.7e-05 Score=60.97 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~ 158 (190)
+++.++++.|+||+||||++..++......+.++.+++.+... +++...++.+|++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~----~~i~~~~~~~g~~ 73 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESR----ESIIRQAAQFGMD 73 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCH----HHHHHHHHHhCCC
Confidence 5688999999999999999999887655567788888876432 3343445555543
No 469
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.83 E-value=1.8e-05 Score=62.11 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=42.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++++..+.|+++++-||+|+||||++++|-+.|.+..+++.+-..+.
T Consensus 27 ~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~ 75 (235)
T COG4778 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE 75 (235)
T ss_pred eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc
Confidence 4566788889999999999999999999999999999888887765553
No 470
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.83 E-value=6.7e-05 Score=58.90 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=32.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
|.+|+|.|++||||||.++.|+..+...|.++.+....
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 67899999999999999999999998888888665443
No 471
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.83 E-value=2.9e-05 Score=64.25 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=34.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+|++.|--|+||||++..||..+...|++|.++++|.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5788899999999999999999999999999999996
No 472
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.83 E-value=3.3e-05 Score=63.92 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=36.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++|++.|--|+||||++..||..+...|++|.++++|..
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 4688888988999999999999999999999999999953
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.82 E-value=1.5e-05 Score=63.17 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+++.+++|+||+||||||+++.|+..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999999874
No 474
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.82 E-value=4.2e-05 Score=65.73 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=41.0
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
..++.+++++.|..|+||||++..||..+...|.+|.++++|..+
T Consensus 27 ~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 27 PTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 345678999999999999999999999999999999999999875
No 475
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.81 E-value=2.4e-05 Score=65.50 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=29.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++|++||||||+++.|+..+.+.+ +.++..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence 589999999999999999999997654 345666655
No 476
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=3.2e-05 Score=59.83 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=29.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
.-.+++.|+||+||||++.+++..+...|++|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 457999999999999999999999998876664
No 477
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.80 E-value=3.1e-05 Score=64.35 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=36.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|+++|--|+||||++..||..+...|++|.++++|..-
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~ 41 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKA 41 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccc
Confidence 4688889999999999999999999999999999999753
No 478
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.80 E-value=3.7e-05 Score=56.20 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccCCChhHHHHHHHHhhhcCCce
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADTFRAGAYDQLKQNATKARIPF 159 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~~r~~a~eql~~~~~~~~i~~ 159 (190)
...++.+.|++|+||||++..++..+... ..++..+.+.... ....-.+.+++.++.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~ 66 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPL 66 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccc
Confidence 45689999999999999999999998653 4556666665544 23333444555555543
No 479
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.80 E-value=3.4e-05 Score=63.82 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=34.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+|++.|--|+||||++..||..+...|++|.+++.|..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 46777999999999999999999999999999999964
No 480
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=1.9e-05 Score=61.03 Aligned_cols=39 Identities=41% Similarity=0.512 Sum_probs=31.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAY 145 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~ 145 (190)
+|.+.||+||||||.++.||..+ |. -++-++++||.-|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl-~~vsaG~iFR~~A~ 40 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GL-KLVSAGTIFREMAR 40 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CC-ceeeccHHHHHHHH
Confidence 68899999999999999999998 44 33566788886543
No 481
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=97.79 E-value=3.5e-05 Score=64.07 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=35.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++|+|.|--|+||||++..||..+...|++|.++++|..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPK 40 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 368888999999999999999999999999999999964
No 482
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.79 E-value=1.4e-05 Score=80.75 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=44.2
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
++++..++|+.++++|++||||||++..|.+.+.+..+++.+.+.|.-..+
T Consensus 1304 ~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1304 HINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC
Confidence 445667789999999999999999999999999999899999888875543
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.78 E-value=2.2e-05 Score=60.98 Aligned_cols=25 Identities=44% Similarity=0.747 Sum_probs=22.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
..+++++|||||||||+++.|+..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999877
No 484
>PLN02200 adenylate kinase family protein
Probab=97.77 E-value=3.1e-05 Score=63.45 Aligned_cols=43 Identities=28% Similarity=0.543 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+....+.+++++|+|||||||.+..|+..+ |. +.+-..|.+|.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~---g~-~his~gdllR~ 80 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETF---GF-KHLSAGDLLRR 80 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh---CC-eEEEccHHHHH
Confidence 444567899999999999999999999877 32 44555577764
No 485
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.76 E-value=5.8e-05 Score=58.60 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=33.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++.+.||||+||||++..++......|.++.+++.+.-
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47899999999999999999988888889999988753
No 486
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.76 E-value=4.8e-05 Score=66.22 Aligned_cols=38 Identities=32% Similarity=0.400 Sum_probs=34.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.|.+++|+|++||||||++.+|...+..+ ++|.++..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 57899999999999999999999999988 899998764
No 487
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.75 E-value=4.6e-05 Score=60.63 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=26.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEE
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLV 135 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li 135 (190)
+++++||+||||||++..++..+.+. ++++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 79999999999999999999888654 4455444
No 488
>KOG0055|consensus
Probab=97.75 E-value=3.4e-05 Score=75.19 Aligned_cols=50 Identities=22% Similarity=0.162 Sum_probs=43.2
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
++++..++|+.+++|||+||||||++..|-+.|.+..++|.+.+.|.-..
T Consensus 1008 ~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l 1057 (1228)
T KOG0055|consen 1008 NLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL 1057 (1228)
T ss_pred CCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC
Confidence 35567788999999999999999999999999999999998887776443
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.74 E-value=1.8e-05 Score=61.39 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.+++|+||+||||||+++.|+..+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 46899999999999999999998653
No 490
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.74 E-value=1.9e-05 Score=71.41 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=50.9
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc----CCcEEEEeccCCChhHHHHHHHHhhh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK----NWKACLVCADTFRAGAYDQLKQNATK 154 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~----~~~v~li~~D~~r~~a~eql~~~~~~ 154 (190)
.++++|...+|++++++|-+||||||++..+-+++... +++|.+-+.|.......+.-+..+++
T Consensus 25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~ 92 (539)
T COG1123 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92 (539)
T ss_pred eecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhcccc
Confidence 45778899999999999999999999999999998765 68898888887776655443333333
No 491
>PLN03140 ABC transporter G family member; Provisional
Probab=97.74 E-value=1.3e-05 Score=80.56 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=36.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc---CCcEEEEe
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK---NWKACLVC 136 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~---~~~v~li~ 136 (190)
+++++..++|++++++|||||||||+++.|++.+.+. .++|.+.+
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG 229 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG 229 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECC
Confidence 3456677899999999999999999999999998765 45565543
No 492
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.74 E-value=2.5e-05 Score=62.35 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+++++++||||+||||+++.++...
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 35899999999999999999999765
No 493
>PRK06547 hypothetical protein; Provisional
Probab=97.73 E-value=3.4e-05 Score=60.30 Aligned_cols=39 Identities=33% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
..+.+|++.|++||||||++.+|+..+. +.+++.|.|..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-----~~~~~~d~~~~ 51 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG-----FQLVHLDDLYP 51 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-----CCeecccceec
Confidence 4567999999999999999999998752 44677786654
No 494
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=97.73 E-value=5.1e-05 Score=64.09 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=36.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++|.|-.|+||||++..||..+...|++|.++++|..
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 578888999999999999999999999999999999974
No 495
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=97.73 E-value=4.9e-05 Score=64.30 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=35.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++|+|+|--|+||||++..||..+...|++|.++++|.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 36888899999999999999999999999999999996
No 496
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.73 E-value=8.3e-05 Score=60.39 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=36.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.++.+.|++|+||||++..++.....+|.++.+++.+-
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 56889999999999999999999877666788999998874
No 497
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.72 E-value=2.6e-05 Score=60.64 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++++.+.|++||||||+++.|+..+... ...++.|.|+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~ 39 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFI 39 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHH
Confidence 5699999999999999999999886321 2234566543
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.72 E-value=2.6e-05 Score=59.65 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=26.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++++||+||||||+++.|+..+. ..+++.|.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCcccc
Confidence 46899999999999999999873 3456778764
No 499
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.72 E-value=0.00022 Score=67.80 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhh------------------cCCCCc
Q psy4311 31 MLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKL------------------VDPGVK 92 (190)
Q Consensus 31 ~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~------------------l~~~~~ 92 (190)
-++++++.+.+.+++.++.+.+..++.+--.. .+.+++..+.....+++..+ ++..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~ 325 (784)
T PRK10787 250 ENEALKRKIDAAKMPKEAKEKAEAELQKLKMM----SPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHY 325 (784)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhcc
Confidence 35788889999999999888888877653211 11222222333333333321 111000
Q ss_pred c-----------c----CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc
Q psy4311 93 A-----------H----QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK 128 (190)
Q Consensus 93 ~-----------~----~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~ 128 (190)
. + .....++.+++|+||+|+||||+++.++..+...
T Consensus 326 g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 326 GLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 0 0 0122357799999999999999999999988543
No 500
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.72 E-value=2.8e-05 Score=61.85 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=25.3
Q ss_pred ccCCCCCCC-eEEEEEccCCCChhHHHHHHH
Q psy4311 93 AHQPQKGKP-NVIMFVGLQGSGKTTTCTKLA 122 (190)
Q Consensus 93 ~~~~~~~~~-~vi~l~G~~G~GKTT~~~~la 122 (190)
++++...++ ++++|+||||+||||+++.++
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 445555666 689999999999999999998
Done!