Query psy4311
Match_columns 190
No_of_seqs 294 out of 2078
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:20:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 3.7E-30 1.3E-34 225.8 21.8 184 1-185 1-195 (443)
2 3e70_C DPA, signal recognition 100.0 6.7E-28 2.3E-32 204.7 19.3 184 1-185 6-224 (328)
3 2ffh_A Protein (FFH); SRP54, s 100.0 2.3E-27 7.9E-32 207.4 22.0 182 2-185 1-193 (425)
4 2xxa_A Signal recognition part 100.0 1E-27 3.4E-32 210.4 18.4 184 2-185 1-196 (433)
5 1j8m_F SRP54, signal recogniti 100.0 8.1E-27 2.8E-31 195.5 20.3 181 4-185 1-193 (297)
6 3kl4_A SRP54, signal recogniti 100.0 4.2E-27 1.4E-31 206.2 19.1 177 9-185 5-192 (433)
7 2j37_W Signal recognition part 99.9 1E-27 3.5E-32 213.6 12.2 185 1-185 1-196 (504)
8 2v3c_C SRP54, signal recogniti 99.9 4E-26 1.4E-30 200.1 16.0 183 3-185 1-193 (432)
9 2og2_A Putative signal recogni 99.9 1.7E-25 6E-30 191.9 19.4 178 1-185 55-253 (359)
10 3b9q_A Chloroplast SRP recepto 99.9 1.5E-24 5.1E-29 182.1 19.2 175 3-185 7-196 (302)
11 1zu4_A FTSY; GTPase, signal re 99.9 1.2E-24 4E-29 184.1 18.6 174 2-185 10-204 (320)
12 1ls1_A Signal recognition part 99.9 1.4E-23 4.9E-28 175.5 21.6 182 2-185 1-193 (295)
13 1rj9_A FTSY, signal recognitio 99.9 5.6E-25 1.9E-29 184.9 12.7 172 2-185 3-197 (304)
14 2yhs_A FTSY, cell division pro 99.9 2.4E-24 8.2E-29 190.9 17.0 166 12-185 212-388 (503)
15 1vma_A Cell division protein F 99.9 8.4E-24 2.9E-28 177.9 17.7 164 4-184 24-198 (306)
16 2px0_A Flagellar biosynthesis 99.8 2.9E-20 9.9E-25 155.6 13.3 152 27-185 37-195 (296)
17 3tif_A Uncharacterized ABC tra 98.8 3.5E-10 1.2E-14 91.2 0.3 52 92-143 22-73 (235)
18 2pcj_A ABC transporter, lipopr 98.7 9E-10 3.1E-14 88.1 -0.2 50 92-141 21-70 (224)
19 3tui_C Methionine import ATP-b 98.7 1.9E-09 6.4E-14 92.4 1.0 81 92-175 45-125 (366)
20 3c8u_A Fructokinase; YP_612366 98.7 3.8E-08 1.3E-12 77.1 8.2 44 98-141 19-62 (208)
21 4g1u_C Hemin import ATP-bindin 98.7 2E-09 6.9E-14 88.4 0.2 52 92-143 28-79 (266)
22 1g6h_A High-affinity branched- 98.7 3E-09 1E-13 86.7 0.7 49 92-140 24-72 (257)
23 3gfo_A Cobalt import ATP-bindi 98.6 2E-09 6.8E-14 88.9 -1.3 49 92-140 25-73 (275)
24 3fvq_A Fe(3+) IONS import ATP- 98.6 3.7E-09 1.2E-13 90.4 0.3 48 92-139 21-68 (359)
25 1ji0_A ABC transporter; ATP bi 98.6 3.2E-09 1.1E-13 85.7 -0.1 50 92-141 23-72 (240)
26 1b0u_A Histidine permease; ABC 98.6 2.6E-09 8.8E-14 87.4 -0.7 49 92-140 23-71 (262)
27 1mv5_A LMRA, multidrug resista 98.6 3.9E-09 1.3E-13 85.3 0.3 48 92-139 19-66 (243)
28 3rlf_A Maltose/maltodextrin im 98.6 4E-09 1.4E-13 90.9 0.2 49 92-140 20-68 (381)
29 1rz3_A Hypothetical protein rb 98.6 7.9E-08 2.7E-12 74.9 7.6 45 98-142 19-63 (201)
30 2olj_A Amino acid ABC transpor 98.6 3.2E-09 1.1E-13 87.1 -0.7 48 92-139 41-88 (263)
31 1vpl_A ABC transporter, ATP-bi 98.6 3.9E-09 1.3E-13 86.2 -0.5 49 92-140 32-80 (256)
32 1htw_A HI0065; nucleotide-bind 98.6 1.2E-08 4.1E-13 77.5 2.2 39 94-133 26-64 (158)
33 2ff7_A Alpha-hemolysin translo 98.6 3.9E-09 1.3E-13 85.6 -0.6 50 92-141 26-75 (247)
34 2yyz_A Sugar ABC transporter, 98.6 6.6E-09 2.3E-13 88.8 0.2 49 92-140 20-68 (359)
35 2qm8_A GTPase/ATPase; G protei 98.6 4.7E-08 1.6E-12 82.7 5.4 46 95-140 49-94 (337)
36 1sgw_A Putative ABC transporte 98.6 3.1E-09 1.1E-13 84.6 -1.8 47 92-138 26-72 (214)
37 2ihy_A ABC transporter, ATP-bi 98.6 4.5E-09 1.5E-13 86.9 -0.9 48 92-139 38-85 (279)
38 1sq5_A Pantothenate kinase; P- 98.6 6E-08 2.1E-12 80.8 5.9 44 98-141 77-122 (308)
39 2ixe_A Antigen peptide transpo 98.6 5.4E-09 1.9E-13 86.0 -0.4 49 92-140 36-84 (271)
40 2yz2_A Putative ABC transporte 98.6 5.1E-09 1.7E-13 85.8 -0.7 48 92-139 24-71 (266)
41 2it1_A 362AA long hypothetical 98.6 7.5E-09 2.6E-13 88.6 0.2 49 92-140 20-68 (362)
42 2onk_A Molybdate/tungstate ABC 98.6 6.5E-09 2.2E-13 84.1 -0.4 48 91-139 15-62 (240)
43 2qi9_C Vitamin B12 import ATP- 98.5 6.4E-09 2.2E-13 84.6 -0.7 48 91-139 16-63 (249)
44 2d2e_A SUFC protein; ABC-ATPas 98.5 9E-09 3.1E-13 83.6 0.2 50 92-141 20-71 (250)
45 1z6g_A Guanylate kinase; struc 98.5 4E-08 1.4E-12 77.9 3.8 41 91-134 13-53 (218)
46 2cbz_A Multidrug resistance-as 98.5 8.5E-09 2.9E-13 83.1 -0.2 44 91-134 21-64 (237)
47 2pze_A Cystic fibrosis transme 98.5 8.1E-09 2.8E-13 82.8 -0.5 43 92-134 25-67 (229)
48 3d31_A Sulfate/molybdate ABC t 98.5 6.6E-09 2.2E-13 88.5 -1.1 49 92-140 17-65 (348)
49 3asz_A Uridine kinase; cytidin 98.5 1.2E-07 4.2E-12 73.8 5.8 39 99-140 4-42 (211)
50 3tqc_A Pantothenate kinase; bi 98.5 2.8E-07 9.5E-12 77.6 8.2 45 98-142 89-135 (321)
51 2eyu_A Twitching motility prot 98.5 1.5E-07 5.1E-12 76.9 6.0 42 98-139 22-64 (261)
52 2zu0_C Probable ATP-dependent 98.5 1.2E-08 4.1E-13 83.7 -0.6 48 92-139 37-86 (267)
53 3nh6_A ATP-binding cassette SU 98.5 7.9E-09 2.7E-13 86.6 -1.8 52 92-143 71-122 (306)
54 3aez_A Pantothenate kinase; tr 98.5 1.6E-07 5.5E-12 78.7 6.2 43 98-140 87-131 (312)
55 1z47_A CYSA, putative ABC-tran 98.5 1.2E-08 4.3E-13 87.0 -0.7 48 92-139 32-79 (355)
56 2jeo_A Uridine-cytidine kinase 98.5 1.4E-07 4.9E-12 75.7 5.6 49 92-140 16-69 (245)
57 1v43_A Sugar-binding transport 98.5 1.7E-08 5.8E-13 86.7 0.0 48 92-139 28-75 (372)
58 2ghi_A Transport protein; mult 98.5 1.5E-08 5.3E-13 82.7 -0.9 47 92-139 37-83 (260)
59 1g29_1 MALK, maltose transport 98.4 1.6E-08 5.4E-13 86.9 -1.0 48 92-139 20-67 (372)
60 2nq2_C Hypothetical ABC transp 98.4 1.8E-08 6.1E-13 82.1 -0.7 41 92-132 22-62 (253)
61 2yvu_A Probable adenylyl-sulfa 98.4 1.6E-07 5.6E-12 71.9 4.8 43 98-140 10-52 (186)
62 2w0m_A SSO2452; RECA, SSPF, un 98.4 2.9E-07 9.9E-12 71.9 6.2 42 99-140 21-62 (235)
63 3p32_A Probable GTPase RV1496/ 98.4 2.7E-07 9.3E-12 78.3 6.4 43 99-141 77-119 (355)
64 3uie_A Adenylyl-sulfate kinase 98.4 1.9E-07 6.7E-12 72.5 5.0 43 98-140 22-64 (200)
65 1oxx_K GLCV, glucose, ABC tran 98.4 1.1E-08 3.7E-13 87.3 -2.5 48 92-139 22-69 (353)
66 2bbs_A Cystic fibrosis transme 98.4 2.2E-08 7.4E-13 83.2 -0.7 43 91-133 54-96 (290)
67 2ehv_A Hypothetical protein PH 98.4 2.7E-07 9.1E-12 73.2 5.7 42 98-139 27-69 (251)
68 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-07 4.5E-12 73.1 3.7 28 98-125 4-31 (205)
69 2pjz_A Hypothetical protein ST 98.4 2.5E-08 8.6E-13 81.7 -0.7 45 92-138 22-66 (263)
70 3gd7_A Fusion complex of cysti 98.4 4.1E-08 1.4E-12 84.8 0.4 52 91-143 37-88 (390)
71 3b85_A Phosphate starvation-in 98.3 2.3E-07 8E-12 73.3 3.7 33 100-133 21-53 (208)
72 2p67_A LAO/AO transport system 98.3 4.6E-07 1.6E-11 76.5 5.7 46 97-142 52-97 (341)
73 3b5x_A Lipid A export ATP-bind 98.3 1.3E-07 4.3E-12 85.4 2.4 48 93-140 361-408 (582)
74 3ec2_A DNA replication protein 98.3 3.8E-07 1.3E-11 69.4 4.7 40 99-138 36-76 (180)
75 1znw_A Guanylate kinase, GMP k 98.3 2.3E-07 7.7E-12 72.6 3.3 30 97-126 16-45 (207)
76 3a00_A Guanylate kinase, GMP k 98.3 2.1E-07 7.3E-12 71.5 3.0 26 101-126 1-26 (186)
77 2i3b_A HCR-ntpase, human cance 98.3 2.4E-07 8.1E-12 72.2 3.1 32 101-134 1-32 (189)
78 4gp7_A Metallophosphoesterase; 98.3 2.1E-07 7E-12 70.9 2.6 26 95-120 3-28 (171)
79 4a74_A DNA repair and recombin 98.3 7.6E-07 2.6E-11 69.7 5.4 29 99-127 23-51 (231)
80 4eun_A Thermoresistant glucoki 98.3 1.3E-06 4.3E-11 67.8 6.4 38 98-140 26-63 (200)
81 3lnc_A Guanylate kinase, GMP k 98.3 2E-07 6.9E-12 73.9 1.8 33 93-125 19-52 (231)
82 1gvn_B Zeta; postsegregational 98.3 1E-06 3.6E-11 72.7 6.1 61 74-142 11-71 (287)
83 2www_A Methylmalonic aciduria 98.3 1.1E-06 3.7E-11 74.6 6.2 44 99-142 72-115 (349)
84 3qf4_B Uncharacterized ABC tra 98.3 1.4E-07 4.9E-12 85.3 0.7 47 95-141 375-421 (598)
85 2kjq_A DNAA-related protein; s 98.3 1.3E-06 4.5E-11 65.3 5.9 39 100-138 35-73 (149)
86 1zp6_A Hypothetical protein AT 98.3 4.1E-07 1.4E-11 69.5 3.1 27 98-124 6-32 (191)
87 2pez_A Bifunctional 3'-phospho 98.3 8.2E-07 2.8E-11 67.5 4.7 41 99-139 3-43 (179)
88 1cr0_A DNA primase/helicase; R 98.3 7.9E-07 2.7E-11 73.0 5.0 44 96-139 30-74 (296)
89 2ewv_A Twitching motility prot 98.2 1.1E-06 3.7E-11 75.2 5.9 40 98-137 133-173 (372)
90 1xjc_A MOBB protein homolog; s 98.2 1.3E-06 4.5E-11 67.0 5.7 40 101-140 4-43 (169)
91 3b60_A Lipid A export ATP-bind 98.2 1.2E-07 4.1E-12 85.5 -0.3 47 95-141 363-409 (582)
92 2npi_A Protein CLP1; CLP1-PCF1 98.2 2.7E-07 9.4E-12 81.2 1.8 45 94-138 131-176 (460)
93 3euj_A Chromosome partition pr 98.2 4E-07 1.4E-11 80.6 2.5 48 92-140 21-68 (483)
94 2yl4_A ATP-binding cassette SU 98.2 1.2E-07 4.1E-12 85.7 -0.9 47 95-141 364-410 (595)
95 2v9p_A Replication protein E1; 98.2 5.9E-07 2E-11 75.1 3.4 38 93-133 118-155 (305)
96 2dr3_A UPF0273 protein PH0284; 98.2 3.5E-06 1.2E-10 66.4 7.4 42 99-140 21-62 (247)
97 1lvg_A Guanylate kinase, GMP k 98.2 7.3E-07 2.5E-11 69.5 3.2 27 100-126 3-29 (198)
98 1knq_A Gluconate kinase; ALFA/ 98.2 1.9E-06 6.4E-11 65.1 5.5 38 99-141 6-43 (175)
99 1p9r_A General secretion pathw 98.2 1.5E-06 5E-11 75.7 5.4 41 99-139 165-205 (418)
100 2p5t_B PEZT; postsegregational 98.2 2.8E-06 9.5E-11 68.5 6.7 42 98-142 29-70 (253)
101 2wsm_A Hydrogenase expression/ 98.2 6.1E-06 2.1E-10 64.3 8.4 41 101-142 30-70 (221)
102 3qf4_A ABC transporter, ATP-bi 98.2 1.5E-07 5.3E-12 85.0 -0.9 48 95-142 363-410 (587)
103 4a82_A Cystic fibrosis transme 98.2 8.9E-08 3.1E-12 86.3 -2.5 46 96-141 362-407 (578)
104 1s96_A Guanylate kinase, GMP k 98.2 6E-07 2E-11 71.5 2.5 39 98-136 13-53 (219)
105 1m7g_A Adenylylsulfate kinase; 98.2 1.4E-06 4.6E-11 68.2 4.5 43 99-141 23-66 (211)
106 3sop_A Neuronal-specific septi 98.2 9.5E-07 3.3E-11 72.4 3.6 37 102-138 3-39 (270)
107 1odf_A YGR205W, hypothetical 3 98.2 1.4E-06 4.8E-11 72.2 4.6 44 99-142 29-75 (290)
108 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 1.4E-06 4.7E-11 70.7 4.2 42 100-141 3-44 (260)
109 3vaa_A Shikimate kinase, SK; s 98.1 1.4E-06 4.8E-11 67.5 3.9 44 92-140 16-59 (199)
110 2obl_A ESCN; ATPase, hydrolase 98.1 8.4E-07 2.9E-11 75.4 2.6 41 96-136 66-106 (347)
111 3ozx_A RNAse L inhibitor; ATP 98.1 6E-07 2.1E-11 80.4 1.7 35 98-132 22-56 (538)
112 2gza_A Type IV secretion syste 98.1 3.6E-07 1.2E-11 77.8 -0.0 44 95-138 169-212 (361)
113 2bdt_A BH3686; alpha-beta prot 98.1 2.3E-06 7.9E-11 65.4 4.3 31 101-134 2-32 (189)
114 1ye8_A Protein THEP1, hypothet 98.1 1.8E-06 6.1E-11 66.5 3.7 24 103-126 2-25 (178)
115 2f1r_A Molybdopterin-guanine d 98.1 1.7E-06 5.9E-11 66.3 3.4 38 102-139 3-40 (171)
116 2j41_A Guanylate kinase; GMP, 98.1 1.4E-06 4.6E-11 67.2 2.8 29 99-127 4-32 (207)
117 1kgd_A CASK, peripheral plasma 98.1 2.1E-06 7.2E-11 65.6 3.8 27 100-126 4-30 (180)
118 1kht_A Adenylate kinase; phosp 98.1 3E-06 1E-10 64.3 4.7 38 101-138 3-40 (192)
119 3tau_A Guanylate kinase, GMP k 98.1 1.4E-06 4.9E-11 68.2 2.9 28 99-126 6-33 (208)
120 1a7j_A Phosphoribulokinase; tr 98.1 2.6E-06 9E-11 70.4 4.6 42 100-141 4-45 (290)
121 3jvv_A Twitching mobility prot 98.1 4.1E-06 1.4E-10 71.3 5.9 40 99-139 121-161 (356)
122 1pzn_A RAD51, DNA repair and r 98.1 1.9E-05 6.6E-10 66.9 10.0 110 39-157 71-191 (349)
123 1yqt_A RNAse L inhibitor; ATP- 98.1 1.3E-06 4.3E-11 78.3 2.6 38 93-131 40-77 (538)
124 1np6_A Molybdopterin-guanine d 98.1 5.5E-06 1.9E-10 63.7 5.7 39 101-139 6-44 (174)
125 1nks_A Adenylate kinase; therm 98.1 4.3E-06 1.5E-10 63.4 5.0 37 102-138 2-38 (194)
126 1tf7_A KAIC; homohexamer, hexa 98.1 3.9E-06 1.3E-10 74.7 5.5 46 93-138 30-78 (525)
127 2cvh_A DNA repair and recombin 98.0 4.3E-06 1.5E-10 64.9 5.1 38 99-139 18-55 (220)
128 2qt1_A Nicotinamide riboside k 98.0 3.1E-06 1E-10 65.8 4.2 41 96-140 16-56 (207)
129 3umf_A Adenylate kinase; rossm 98.0 2.5E-06 8.6E-11 67.9 3.7 43 97-143 25-67 (217)
130 2pt7_A CAG-ALFA; ATPase, prote 98.0 1.7E-06 5.6E-11 73.0 2.3 44 96-139 166-209 (330)
131 3j16_B RLI1P; ribosome recycli 98.0 1.4E-06 4.8E-11 79.1 2.0 35 98-132 100-134 (608)
132 3fwy_A Light-independent proto 98.0 7.4E-06 2.5E-10 68.6 6.2 44 97-140 44-87 (314)
133 2dpy_A FLII, flagellum-specifi 98.0 1.8E-06 6.1E-11 75.5 2.5 42 96-137 152-193 (438)
134 2vp4_A Deoxynucleoside kinase; 98.0 3E-06 1E-10 67.3 3.5 39 97-139 16-54 (230)
135 3ozx_A RNAse L inhibitor; ATP 98.0 9.6E-07 3.3E-11 79.1 0.7 37 98-134 291-327 (538)
136 1yrb_A ATP(GTP)binding protein 98.0 8.7E-06 3E-10 65.1 6.2 41 99-140 12-52 (262)
137 3t61_A Gluconokinase; PSI-biol 98.0 4E-06 1.4E-10 64.8 4.1 37 100-141 17-53 (202)
138 2bbw_A Adenylate kinase 4, AK4 98.0 3.7E-06 1.3E-10 67.2 4.0 26 100-125 26-51 (246)
139 1kag_A SKI, shikimate kinase I 98.0 2.9E-06 9.9E-11 63.7 3.0 34 101-139 4-37 (173)
140 3cr8_A Sulfate adenylyltranfer 98.0 2.2E-06 7.6E-11 77.0 2.6 44 98-141 366-410 (552)
141 1yqt_A RNAse L inhibitor; ATP- 98.0 1.1E-06 3.8E-11 78.6 0.6 41 99-139 310-356 (538)
142 1ly1_A Polynucleotide kinase; 98.0 4.1E-06 1.4E-10 63.0 3.5 37 101-141 2-38 (181)
143 1uj2_A Uridine-cytidine kinase 98.0 6.9E-06 2.4E-10 66.0 5.0 43 99-141 20-67 (252)
144 1qhx_A CPT, protein (chloramph 98.0 3.6E-06 1.2E-10 63.5 3.1 26 101-126 3-28 (178)
145 3bk7_A ABC transporter ATP-bin 98.0 1.3E-06 4.4E-11 79.4 0.6 34 99-132 380-413 (607)
146 3bk7_A ABC transporter ATP-bin 97.9 2.3E-06 7.9E-11 77.7 2.0 38 93-131 110-147 (607)
147 1nn5_A Similar to deoxythymidy 97.9 2.4E-05 8.3E-10 60.4 7.7 37 99-135 7-43 (215)
148 2wwf_A Thymidilate kinase, put 97.9 2.5E-05 8.4E-10 60.4 7.6 37 99-135 8-44 (212)
149 1n0w_A DNA repair protein RAD5 97.9 1.5E-05 5.1E-10 62.7 6.4 41 99-139 22-68 (243)
150 1y63_A LMAJ004144AAA protein; 97.9 8.5E-06 2.9E-10 62.3 4.4 30 95-124 4-33 (184)
151 4eaq_A DTMP kinase, thymidylat 97.9 2.9E-05 1E-09 61.8 7.5 37 98-135 23-59 (229)
152 1nlf_A Regulatory protein REPA 97.9 2.1E-05 7.2E-10 64.0 6.8 41 99-139 28-78 (279)
153 2iw3_A Elongation factor 3A; a 97.9 7.9E-07 2.7E-11 84.5 -2.1 41 94-134 692-732 (986)
154 1lw7_A Transcriptional regulat 97.9 3.3E-06 1.1E-10 71.6 1.9 36 94-129 161-198 (365)
155 3sr0_A Adenylate kinase; phosp 97.9 7.4E-06 2.5E-10 64.6 3.6 37 103-143 2-38 (206)
156 1tq4_A IIGP1, interferon-induc 97.9 2.9E-06 9.9E-11 73.7 1.3 37 100-136 68-104 (413)
157 2oap_1 GSPE-2, type II secreti 97.9 5.2E-06 1.8E-10 73.9 2.9 39 100-138 259-297 (511)
158 3g5u_A MCG1178, multidrug resi 97.9 1.9E-06 6.6E-11 84.2 0.1 50 93-142 1051-1100(1284)
159 3bfv_A CAPA1, CAPB2, membrane 97.9 2.6E-05 9E-10 63.7 6.9 45 99-143 80-125 (271)
160 2x8a_A Nuclear valosin-contain 97.9 1.3E-05 4.3E-10 65.7 4.9 40 96-139 41-80 (274)
161 3end_A Light-independent proto 97.9 2E-05 6.7E-10 64.9 6.1 43 99-141 39-81 (307)
162 1gtv_A TMK, thymidylate kinase 97.9 4.9E-06 1.7E-10 64.5 2.3 34 103-136 2-35 (214)
163 4f4c_A Multidrug resistance pr 97.9 1.8E-06 6.1E-11 84.6 -0.4 50 94-143 1098-1147(1321)
164 3hr8_A Protein RECA; alpha and 97.9 1.6E-05 5.5E-10 67.8 5.5 41 99-139 59-99 (356)
165 3kb2_A SPBC2 prophage-derived 97.9 8.2E-06 2.8E-10 60.8 3.3 36 102-142 2-37 (173)
166 3bos_A Putative DNA replicatio 97.8 2.1E-05 7.2E-10 61.3 5.8 40 100-139 51-90 (242)
167 3ney_A 55 kDa erythrocyte memb 97.8 9E-06 3.1E-10 63.8 3.4 29 98-126 16-44 (197)
168 2e87_A Hypothetical protein PH 97.8 0.00011 3.8E-09 62.0 10.5 26 99-124 165-190 (357)
169 2plr_A DTMP kinase, probable t 97.8 2.2E-05 7.5E-10 60.4 5.5 33 101-134 4-36 (213)
170 1cke_A CK, MSSA, protein (cyti 97.8 1.2E-05 4.1E-10 62.9 4.1 25 101-125 5-29 (227)
171 1cp2_A CP2, nitrogenase iron p 97.8 2.3E-05 8E-10 63.0 5.8 40 102-141 2-41 (269)
172 3kta_A Chromosome segregation 97.8 9.7E-06 3.3E-10 61.4 3.3 28 99-127 25-52 (182)
173 3g5u_A MCG1178, multidrug resi 97.8 1.9E-06 6.6E-11 84.2 -1.0 46 95-140 410-455 (1284)
174 2v54_A DTMP kinase, thymidylat 97.8 2.6E-05 9E-10 59.8 5.7 35 100-136 3-37 (204)
175 2yv5_A YJEQ protein; hydrolase 97.8 6.7E-06 2.3E-10 68.3 2.4 34 100-134 164-197 (302)
176 1u0l_A Probable GTPase ENGC; p 97.8 4.5E-06 1.5E-10 69.2 1.3 41 100-140 168-211 (301)
177 4e22_A Cytidylate kinase; P-lo 97.8 1.1E-05 3.7E-10 65.1 3.5 27 99-125 25-51 (252)
178 3cio_A ETK, tyrosine-protein k 97.8 3.4E-05 1.2E-09 63.9 6.6 45 99-143 102-147 (299)
179 2w58_A DNAI, primosome compone 97.8 2.2E-05 7.5E-10 60.4 5.1 38 101-138 54-91 (202)
180 4fcw_A Chaperone protein CLPB; 97.8 2.2E-05 7.6E-10 64.2 5.3 42 100-141 46-87 (311)
181 2rhm_A Putative kinase; P-loop 97.8 1.6E-05 5.5E-10 60.4 4.2 38 99-141 3-40 (193)
182 3cm0_A Adenylate kinase; ATP-b 97.8 1.3E-05 4.4E-10 60.8 3.6 26 100-125 3-28 (186)
183 2z0h_A DTMP kinase, thymidylat 97.8 2.7E-05 9.2E-10 59.4 5.4 33 103-135 2-34 (197)
184 3ux8_A Excinuclease ABC, A sub 97.8 6.3E-06 2.2E-10 75.4 2.0 28 91-118 34-61 (670)
185 3la6_A Tyrosine-protein kinase 97.8 6E-05 2.1E-09 62.1 7.3 45 99-143 90-135 (286)
186 2qag_B Septin-6, protein NEDD5 97.7 7.6E-06 2.6E-10 71.3 1.8 32 93-124 32-65 (427)
187 2qor_A Guanylate kinase; phosp 97.7 1.2E-05 4E-10 62.5 2.7 28 99-126 10-37 (204)
188 2zr9_A Protein RECA, recombina 97.7 2.8E-05 9.7E-10 65.9 5.3 41 99-139 59-99 (349)
189 1qhl_A Protein (cell division 97.7 1.7E-06 5.9E-11 69.3 -2.2 38 102-139 28-65 (227)
190 2afh_E Nitrogenase iron protei 97.7 4E-05 1.4E-09 62.5 5.9 40 102-141 3-42 (289)
191 1tev_A UMP-CMP kinase; ploop, 97.7 2.1E-05 7.3E-10 59.6 4.0 25 101-125 3-27 (196)
192 2pbr_A DTMP kinase, thymidylat 97.7 3.8E-05 1.3E-09 58.2 5.3 31 103-133 2-32 (195)
193 2if2_A Dephospho-COA kinase; a 97.7 1.7E-05 5.7E-10 61.2 3.3 31 103-139 3-33 (204)
194 3ug7_A Arsenical pump-driving 97.7 7E-05 2.4E-09 63.3 7.4 41 100-140 25-65 (349)
195 3j16_B RLI1P; ribosome recycli 97.7 5.9E-06 2E-10 75.0 0.8 30 101-130 378-407 (608)
196 3k9g_A PF-32 protein; ssgcid, 97.7 4E-05 1.4E-09 61.7 5.5 45 97-142 23-68 (267)
197 1tf7_A KAIC; homohexamer, hexa 97.7 7.1E-05 2.4E-09 66.5 7.6 41 98-138 278-318 (525)
198 2c95_A Adenylate kinase 1; tra 97.7 2.4E-05 8.1E-10 59.6 3.9 26 100-125 8-33 (196)
199 1nij_A Hypothetical protein YJ 97.7 1.8E-05 6.2E-10 66.0 3.5 25 101-125 4-28 (318)
200 4edh_A DTMP kinase, thymidylat 97.7 9.4E-05 3.2E-09 58.4 7.5 37 100-136 5-41 (213)
201 2axn_A 6-phosphofructo-2-kinas 97.7 2.4E-05 8.2E-10 69.7 4.4 44 99-142 33-76 (520)
202 3zq6_A Putative arsenical pump 97.7 8.7E-05 3E-09 62.0 7.6 39 101-139 14-52 (324)
203 2ze6_A Isopentenyl transferase 97.7 2.8E-05 9.7E-10 62.7 4.2 34 102-140 2-35 (253)
204 1qf9_A UMP/CMP kinase, protein 97.7 3.7E-05 1.2E-09 58.2 4.6 34 100-138 5-38 (194)
205 3fkq_A NTRC-like two-domain pr 97.7 6.4E-05 2.2E-09 63.9 6.6 43 96-138 138-181 (373)
206 3q9l_A Septum site-determining 97.7 7.1E-05 2.4E-09 59.5 6.5 41 101-141 2-43 (260)
207 3lv8_A DTMP kinase, thymidylat 97.7 9E-05 3.1E-09 59.5 7.1 36 100-135 26-62 (236)
208 3ea0_A ATPase, para family; al 97.7 5.7E-05 1.9E-09 59.6 5.8 41 100-140 3-45 (245)
209 2z43_A DNA repair and recombin 97.7 6.5E-05 2.2E-09 62.7 6.4 57 99-158 105-168 (324)
210 3trf_A Shikimate kinase, SK; a 97.7 2.8E-05 9.5E-10 58.9 3.8 35 101-140 5-39 (185)
211 2r8r_A Sensor protein; KDPD, P 97.7 8.4E-05 2.9E-09 59.5 6.7 41 102-142 7-47 (228)
212 4f4c_A Multidrug resistance pr 97.7 4.9E-06 1.7E-10 81.5 -0.7 44 96-139 439-482 (1321)
213 2ph1_A Nucleotide-binding prot 97.7 8.9E-05 3.1E-09 59.7 6.8 43 101-143 18-61 (262)
214 1jjv_A Dephospho-COA kinase; P 97.7 2.6E-05 8.8E-10 60.3 3.4 22 102-123 3-24 (206)
215 4tmk_A Protein (thymidylate ki 97.6 0.00012 4.1E-09 57.9 7.1 35 101-135 3-38 (213)
216 3iij_A Coilin-interacting nucl 97.6 3.8E-05 1.3E-09 58.0 4.0 27 99-125 9-35 (180)
217 2rcn_A Probable GTPase ENGC; Y 97.6 1.4E-05 4.7E-10 68.2 1.6 35 100-134 214-249 (358)
218 2cdn_A Adenylate kinase; phosp 97.6 4.4E-05 1.5E-09 58.8 4.3 28 98-125 17-44 (201)
219 1ihu_A Arsenical pump-driving 97.6 7.4E-05 2.5E-09 67.2 6.3 41 99-139 6-46 (589)
220 1uf9_A TT1252 protein; P-loop, 97.6 3E-05 1E-09 59.4 3.3 36 99-140 6-41 (203)
221 1t9h_A YLOQ, probable GTPase E 97.6 6.8E-06 2.3E-10 68.7 -0.4 37 98-134 170-206 (307)
222 3ld9_A DTMP kinase, thymidylat 97.6 0.00011 3.9E-09 58.5 6.7 40 98-137 18-58 (223)
223 1ukz_A Uridylate kinase; trans 97.6 3.9E-05 1.3E-09 59.1 3.9 29 97-125 11-39 (203)
224 2oze_A ORF delta'; para, walke 97.6 6.4E-05 2.2E-09 61.4 5.4 42 101-142 34-78 (298)
225 1via_A Shikimate kinase; struc 97.6 3.4E-05 1.2E-09 58.2 3.4 33 103-140 6-38 (175)
226 1v5w_A DMC1, meiotic recombina 97.6 0.00012 4.2E-09 61.6 7.2 58 98-158 119-183 (343)
227 2bwj_A Adenylate kinase 5; pho 97.6 3.8E-05 1.3E-09 58.6 3.7 35 100-139 11-45 (199)
228 3d3q_A TRNA delta(2)-isopenten 97.6 5.7E-05 2E-09 63.9 5.1 35 101-140 7-41 (340)
229 3kjh_A CO dehydrogenase/acetyl 97.6 4.2E-05 1.4E-09 60.2 4.0 37 104-140 3-39 (254)
230 1g3q_A MIND ATPase, cell divis 97.6 0.00011 3.8E-09 57.7 6.4 41 101-141 2-43 (237)
231 4dzz_A Plasmid partitioning pr 97.6 7.7E-05 2.6E-09 57.2 5.3 80 102-184 2-87 (206)
232 2orw_A Thymidine kinase; TMTK, 97.6 8.5E-05 2.9E-09 57.2 5.6 36 101-136 3-38 (184)
233 1aky_A Adenylate kinase; ATP:A 97.6 4.4E-05 1.5E-09 59.7 4.0 26 100-125 3-28 (220)
234 3lda_A DNA repair protein RAD5 97.6 9.6E-05 3.3E-09 63.8 6.4 57 99-158 176-239 (400)
235 1l8q_A Chromosomal replication 97.6 5.9E-05 2E-09 62.4 4.8 40 101-140 37-76 (324)
236 1ixz_A ATP-dependent metallopr 97.6 3.3E-05 1.1E-09 61.7 3.2 29 96-126 46-74 (254)
237 2hf9_A Probable hydrogenase ni 97.6 0.00015 5.1E-09 56.4 6.8 40 101-141 38-77 (226)
238 1iy2_A ATP-dependent metallopr 97.6 3.7E-05 1.2E-09 62.5 3.4 29 96-126 70-98 (278)
239 2vli_A Antibiotic resistance p 97.6 2.8E-05 9.6E-10 58.6 2.5 27 100-126 4-30 (183)
240 1hyq_A MIND, cell division inh 97.6 0.00012 4.3E-09 58.4 6.5 41 101-141 2-43 (263)
241 1svm_A Large T antigen; AAA+ f 97.6 3E-05 1E-09 66.6 2.9 31 95-125 163-193 (377)
242 3nwj_A ATSK2; P loop, shikimat 97.6 1.5E-05 5.2E-10 64.6 1.0 26 101-126 48-73 (250)
243 1in4_A RUVB, holliday junction 97.6 4.1E-05 1.4E-09 64.1 3.7 26 100-125 50-75 (334)
244 2iw3_A Elongation factor 3A; a 97.6 2E-05 7E-10 74.9 2.0 29 95-123 455-483 (986)
245 1x6v_B Bifunctional 3'-phospho 97.6 6E-05 2.1E-09 68.6 4.9 42 100-141 51-92 (630)
246 1zak_A Adenylate kinase; ATP:A 97.6 4.5E-05 1.5E-09 59.8 3.6 27 100-126 4-30 (222)
247 3lw7_A Adenylate kinase relate 97.5 5.8E-05 2E-09 55.8 3.9 20 102-121 2-21 (179)
248 2jaq_A Deoxyguanosine kinase; 97.5 5.4E-05 1.8E-09 57.8 3.6 24 103-126 2-25 (205)
249 2iyv_A Shikimate kinase, SK; t 97.5 4.6E-05 1.6E-09 57.7 3.2 34 102-140 3-36 (184)
250 3iqw_A Tail-anchored protein t 97.5 0.00011 3.8E-09 61.9 5.7 40 100-139 15-54 (334)
251 3tlx_A Adenylate kinase 2; str 97.5 6.9E-05 2.4E-09 60.0 4.2 26 100-125 28-53 (243)
252 2woo_A ATPase GET3; tail-ancho 97.5 0.00013 4.5E-09 61.1 6.1 40 101-140 19-58 (329)
253 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 7.5E-05 2.6E-09 55.6 4.1 25 101-125 23-47 (149)
254 1m8p_A Sulfate adenylyltransfe 97.5 6.9E-05 2.3E-09 67.6 4.5 44 98-141 393-437 (573)
255 1jbk_A CLPB protein; beta barr 97.5 0.00012 4.1E-09 54.5 5.2 37 101-137 43-86 (195)
256 1wcv_1 SOJ, segregation protei 97.5 8.3E-05 2.9E-09 59.6 4.5 42 100-141 5-47 (257)
257 1ltq_A Polynucleotide kinase; 97.5 4.4E-05 1.5E-09 62.4 2.9 37 101-141 2-38 (301)
258 2xj4_A MIPZ; replication, cell 97.5 0.0002 7E-09 58.4 6.9 44 101-144 4-48 (286)
259 3v9p_A DTMP kinase, thymidylat 97.5 9.5E-05 3.3E-09 59.1 4.8 38 99-136 23-64 (227)
260 1pui_A ENGB, probable GTP-bind 97.5 3.8E-05 1.3E-09 59.0 2.3 30 96-125 21-50 (210)
261 1u94_A RECA protein, recombina 97.5 0.00011 3.9E-09 62.4 5.4 41 99-139 61-101 (356)
262 4aby_A DNA repair protein RECN 97.5 1.4E-05 4.7E-10 68.4 -0.4 34 92-126 52-85 (415)
263 1zd8_A GTP:AMP phosphotransfer 97.5 5.5E-05 1.9E-09 59.5 3.1 26 100-125 6-31 (227)
264 3t15_A Ribulose bisphosphate c 97.5 0.00028 9.7E-09 58.0 7.4 36 99-137 34-69 (293)
265 3ux8_A Excinuclease ABC, A sub 97.5 2.1E-05 7E-10 72.0 0.5 30 93-122 340-369 (670)
266 2woj_A ATPase GET3; tail-ancho 97.5 0.00021 7.2E-09 60.6 6.6 39 101-139 18-58 (354)
267 3crm_A TRNA delta(2)-isopenten 97.4 0.00012 4.2E-09 61.5 5.0 34 101-139 5-38 (323)
268 1q3t_A Cytidylate kinase; nucl 97.4 9.4E-05 3.2E-09 58.6 4.1 27 99-125 14-40 (236)
269 1wb9_A DNA mismatch repair pro 97.4 6.3E-05 2.2E-09 70.3 3.4 30 95-125 602-631 (800)
270 2gks_A Bifunctional SAT/APS ki 97.4 7.6E-05 2.6E-09 66.9 3.8 43 99-141 370-412 (546)
271 1zuh_A Shikimate kinase; alpha 97.4 9E-05 3.1E-09 55.3 3.6 34 101-139 7-40 (168)
272 3io3_A DEHA2D07832P; chaperone 97.4 0.00018 6.2E-09 60.9 5.9 40 100-139 17-58 (348)
273 2qgz_A Helicase loader, putati 97.4 0.00015 5.1E-09 60.2 5.3 38 101-138 152-190 (308)
274 3a8t_A Adenylate isopentenyltr 97.4 9.8E-05 3.3E-09 62.5 4.1 37 99-140 38-74 (339)
275 3foz_A TRNA delta(2)-isopenten 97.4 0.00015 5.2E-09 60.7 5.3 36 99-139 8-43 (316)
276 3thx_B DNA mismatch repair pro 97.4 4.9E-05 1.7E-09 72.0 2.4 33 93-125 665-697 (918)
277 1vht_A Dephospho-COA kinase; s 97.4 0.0001 3.5E-09 57.4 3.9 24 100-123 3-26 (218)
278 1e6c_A Shikimate kinase; phosp 97.4 8.9E-05 3E-09 55.3 3.4 34 102-140 3-36 (173)
279 3r20_A Cytidylate kinase; stru 97.4 0.0001 3.5E-09 59.2 3.8 27 100-126 8-34 (233)
280 3fb4_A Adenylate kinase; psych 97.4 9.8E-05 3.4E-09 57.3 3.7 23 103-125 2-24 (216)
281 2grj_A Dephospho-COA kinase; T 97.4 0.00011 3.7E-09 57.1 3.9 36 100-140 11-46 (192)
282 3exa_A TRNA delta(2)-isopenten 97.4 0.00012 4E-09 61.5 4.2 34 101-139 3-36 (322)
283 1oix_A RAS-related protein RAB 97.4 9.1E-05 3.1E-09 56.5 3.3 26 101-126 29-54 (191)
284 1sxj_C Activator 1 40 kDa subu 97.4 8.2E-05 2.8E-09 62.1 3.1 32 104-135 49-80 (340)
285 1xx6_A Thymidine kinase; NESG, 97.4 0.00029 9.8E-09 54.8 6.0 38 99-136 6-43 (191)
286 3qf7_A RAD50; ABC-ATPase, ATPa 97.4 8.7E-05 3E-09 63.1 3.2 27 99-126 22-48 (365)
287 1fnn_A CDC6P, cell division co 97.4 0.00023 7.9E-09 59.5 5.9 39 103-141 46-85 (389)
288 2p65_A Hypothetical protein PF 97.4 0.00016 5.5E-09 53.8 4.4 27 101-127 43-69 (187)
289 2qby_A CDC6 homolog 1, cell di 97.4 0.00017 5.8E-09 60.0 4.9 40 99-138 43-85 (386)
290 3be4_A Adenylate kinase; malar 97.4 0.00011 3.7E-09 57.5 3.4 25 101-125 5-29 (217)
291 2f9l_A RAB11B, member RAS onco 97.3 0.00011 3.7E-09 56.3 3.3 23 102-124 6-28 (199)
292 2r6a_A DNAB helicase, replicat 97.3 0.00024 8.2E-09 62.0 5.9 42 98-139 200-242 (454)
293 1ak2_A Adenylate kinase isoenz 97.3 0.00014 5E-09 57.4 4.1 27 100-126 15-41 (233)
294 2pt5_A Shikimate kinase, SK; a 97.3 0.00013 4.5E-09 54.2 3.6 33 103-140 2-34 (168)
295 3zvl_A Bifunctional polynucleo 97.3 0.0001 3.5E-09 63.7 3.5 38 99-141 256-293 (416)
296 2o5v_A DNA replication and rep 97.3 0.00011 3.6E-09 62.7 3.5 31 95-126 21-51 (359)
297 3syl_A Protein CBBX; photosynt 97.3 0.00029 1E-08 57.4 6.0 40 99-138 65-108 (309)
298 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0007 2.4E-08 53.6 7.9 37 99-138 37-73 (262)
299 1xp8_A RECA protein, recombina 97.3 0.00023 7.7E-09 60.8 5.3 41 99-139 72-112 (366)
300 4ag6_A VIRB4 ATPase, type IV s 97.3 0.0003 1E-08 59.8 6.1 38 101-138 35-72 (392)
301 3izq_1 HBS1P, elongation facto 97.3 0.00019 6.3E-09 65.2 5.0 24 100-123 166-189 (611)
302 3dl0_A Adenylate kinase; phosp 97.3 0.00011 3.6E-09 57.2 3.0 23 103-125 2-24 (216)
303 3thx_A DNA mismatch repair pro 97.3 9.2E-05 3.2E-09 70.2 3.0 30 95-124 656-685 (934)
304 2b8t_A Thymidine kinase; deoxy 97.3 0.0003 1E-08 56.0 5.6 38 99-136 10-47 (223)
305 3ake_A Cytidylate kinase; CMP 97.3 0.00016 5.6E-09 55.4 3.9 33 103-140 4-36 (208)
306 3cf0_A Transitional endoplasmi 97.3 0.00012 4.1E-09 60.3 3.3 27 99-125 47-73 (301)
307 2i1q_A DNA repair and recombin 97.3 0.00032 1.1E-08 58.1 5.9 110 39-158 39-169 (322)
308 1lv7_A FTSH; alpha/beta domain 97.3 0.00034 1.1E-08 55.8 5.8 26 101-126 45-70 (257)
309 3bh0_A DNAB-like replicative h 97.3 0.00032 1.1E-08 58.3 5.8 41 99-139 66-106 (315)
310 1sxj_E Activator 1 40 kDa subu 97.3 0.00011 3.9E-09 61.0 3.1 27 104-130 39-66 (354)
311 4b3f_X DNA-binding protein smu 97.3 0.00077 2.6E-08 61.2 8.7 55 102-159 206-260 (646)
312 2zts_A Putative uncharacterize 97.3 0.00035 1.2E-08 54.8 5.7 42 99-140 28-70 (251)
313 2xb4_A Adenylate kinase; ATP-b 97.3 0.00016 5.5E-09 56.9 3.6 23 103-125 2-24 (223)
314 1ewq_A DNA mismatch repair pro 97.3 0.00012 4.1E-09 68.1 3.3 26 101-126 576-601 (765)
315 3qks_A DNA double-strand break 97.3 0.00019 6.5E-09 56.0 3.9 26 101-126 23-48 (203)
316 1w1w_A Structural maintenance 97.3 0.00014 4.7E-09 62.9 3.3 29 99-127 24-52 (430)
317 3ez2_A Plasmid partition prote 97.2 0.00041 1.4E-08 59.2 6.2 44 97-140 104-154 (398)
318 3szr_A Interferon-induced GTP- 97.2 3E-05 1E-09 70.3 -1.1 33 103-135 47-80 (608)
319 3m6a_A ATP-dependent protease 97.2 0.00014 4.8E-09 65.0 3.2 28 100-127 107-134 (543)
320 1e4v_A Adenylate kinase; trans 97.2 0.00019 6.4E-09 55.9 3.6 23 103-125 2-24 (214)
321 1bif_A 6-phosphofructo-2-kinas 97.2 0.00022 7.4E-09 62.5 4.3 38 99-136 37-74 (469)
322 3e1s_A Exodeoxyribonuclease V, 97.2 0.00034 1.2E-08 63.0 5.6 42 101-143 204-245 (574)
323 3qkt_A DNA double-strand break 97.2 0.00022 7.5E-09 59.8 4.1 25 101-125 23-47 (339)
324 4a1f_A DNAB helicase, replicat 97.2 0.00044 1.5E-08 58.4 5.8 42 99-140 44-85 (338)
325 2z4s_A Chromosomal replication 97.2 0.00025 8.5E-09 61.7 4.3 40 101-140 130-171 (440)
326 3hjn_A DTMP kinase, thymidylat 97.2 0.00089 3E-08 52.0 7.1 36 103-138 2-37 (197)
327 2f6r_A COA synthase, bifunctio 97.2 0.00024 8.1E-09 58.2 3.9 36 99-140 73-108 (281)
328 2qnr_A Septin-2, protein NEDD5 97.2 0.00012 4.1E-09 60.6 2.1 23 102-124 19-41 (301)
329 2v1u_A Cell division control p 97.2 0.00039 1.3E-08 57.9 5.2 41 99-139 42-88 (387)
330 3cwq_A Para family chromosome 97.2 0.00052 1.8E-08 53.5 5.6 74 103-183 2-78 (209)
331 2chg_A Replication factor C sm 97.2 0.00033 1.1E-08 53.3 4.4 27 103-129 40-66 (226)
332 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.00025 8.5E-09 61.1 3.8 27 98-124 17-43 (392)
333 1byi_A Dethiobiotin synthase; 97.2 0.00048 1.7E-08 53.5 5.2 35 102-136 2-37 (224)
334 3eph_A TRNA isopentenyltransfe 97.2 0.00047 1.6E-08 59.7 5.5 34 101-139 2-35 (409)
335 2qby_B CDC6 homolog 3, cell di 97.1 0.00053 1.8E-08 57.3 5.6 40 100-139 44-91 (384)
336 1ofh_A ATP-dependent HSL prote 97.1 0.00051 1.7E-08 55.7 5.3 37 101-140 50-86 (310)
337 3d8b_A Fidgetin-like protein 1 97.1 0.0012 4.1E-08 55.6 7.8 36 99-137 115-150 (357)
338 3tmk_A Thymidylate kinase; pho 97.1 0.00099 3.4E-08 52.7 6.8 28 100-127 4-31 (216)
339 3pg5_A Uncharacterized protein 97.1 0.0003 1E-08 59.6 4.0 41 102-142 2-43 (361)
340 1g8f_A Sulfate adenylyltransfe 97.1 0.00036 1.2E-08 62.1 4.6 41 99-139 393-435 (511)
341 3llm_A ATP-dependent RNA helic 97.1 0.00092 3.1E-08 52.8 6.5 56 101-156 76-134 (235)
342 3ez9_A Para; DNA binding, wing 97.1 0.00035 1.2E-08 59.8 4.3 42 99-140 109-157 (403)
343 3ice_A Transcription terminati 97.1 0.00034 1.1E-08 60.5 4.1 45 94-138 167-213 (422)
344 2h92_A Cytidylate kinase; ross 97.1 0.00026 8.8E-09 55.0 3.1 34 101-139 3-36 (219)
345 4b4t_M 26S protease regulatory 97.1 0.00057 1.9E-08 59.6 5.5 29 98-126 212-240 (434)
346 1ex7_A Guanylate kinase; subst 97.1 0.00027 9.2E-09 54.8 3.1 23 103-125 3-25 (186)
347 4b4t_K 26S protease regulatory 97.1 0.0006 2E-08 59.4 5.6 37 98-137 203-239 (428)
348 2o8b_B DNA mismatch repair pro 97.1 0.00028 9.6E-09 67.6 3.7 25 101-126 789-813 (1022)
349 2gj8_A MNME, tRNA modification 97.1 0.0003 1E-08 52.7 3.0 25 100-124 3-27 (172)
350 1e69_A Chromosome segregation 97.1 0.00026 8.8E-09 58.9 2.9 26 99-125 23-48 (322)
351 2wji_A Ferrous iron transport 97.1 0.00031 1.1E-08 52.0 3.1 22 102-123 4-25 (165)
352 3bgw_A DNAB-like replicative h 97.1 0.0014 4.9E-08 57.1 7.7 42 99-140 195-236 (444)
353 3h4m_A Proteasome-activating n 97.1 0.00061 2.1E-08 54.9 5.0 26 100-125 50-75 (285)
354 3n70_A Transport activator; si 97.0 0.00036 1.2E-08 51.1 3.3 35 103-138 26-60 (145)
355 2ged_A SR-beta, signal recogni 97.0 0.00083 2.8E-08 50.6 5.4 25 100-124 47-71 (193)
356 4hlc_A DTMP kinase, thymidylat 97.0 0.00072 2.5E-08 52.9 5.1 36 101-137 2-37 (205)
357 3b9p_A CG5977-PA, isoform A; A 97.0 0.00036 1.2E-08 56.7 3.5 26 100-125 53-78 (297)
358 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00044 1.5E-08 58.2 4.0 35 100-137 122-156 (331)
359 1njg_A DNA polymerase III subu 97.0 0.00046 1.6E-08 53.0 3.7 27 101-127 45-71 (250)
360 2wjg_A FEOB, ferrous iron tran 97.0 0.00032 1.1E-08 52.6 2.7 24 101-124 7-30 (188)
361 2gk6_A Regulator of nonsense t 97.0 0.0019 6.6E-08 58.5 8.3 56 102-160 196-252 (624)
362 4b4t_L 26S protease subunit RP 97.0 0.0008 2.7E-08 58.7 5.6 38 98-138 212-249 (437)
363 2q6t_A DNAB replication FORK h 97.0 0.00098 3.3E-08 57.9 5.9 42 98-139 197-239 (444)
364 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0021 7.2E-08 53.4 7.7 27 99-125 43-69 (322)
365 3k1j_A LON protease, ATP-depen 97.0 0.00044 1.5E-08 62.4 3.7 38 100-137 59-96 (604)
366 1tue_A Replication protein E1; 97.0 0.00047 1.6E-08 54.5 3.3 26 101-126 58-83 (212)
367 2ocp_A DGK, deoxyguanosine kin 96.9 0.00046 1.6E-08 54.7 3.3 27 100-126 1-27 (241)
368 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0015 5E-08 58.0 6.8 23 104-126 67-89 (499)
369 2bjv_A PSP operon transcriptio 96.9 0.00083 2.8E-08 53.7 4.7 41 102-142 30-70 (265)
370 3te6_A Regulatory protein SIR3 96.9 0.0015 5.2E-08 54.6 6.4 29 99-127 43-71 (318)
371 3uk6_A RUVB-like 2; hexameric 96.9 0.00089 3.1E-08 55.8 4.8 28 101-128 70-97 (368)
372 2vf7_A UVRA2, excinuclease ABC 96.9 0.00012 4.3E-09 68.6 -0.8 34 93-126 515-549 (842)
373 3io5_A Recombination and repai 96.8 0.0013 4.3E-08 55.4 5.1 38 100-138 28-67 (333)
374 1ega_A Protein (GTP-binding pr 96.8 0.00051 1.7E-08 56.7 2.6 25 100-124 7-31 (301)
375 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0012 3.9E-08 56.3 4.8 25 102-126 25-49 (359)
376 1d2n_A N-ethylmaleimide-sensit 96.8 0.00093 3.2E-08 53.7 4.0 27 99-125 62-88 (272)
377 3pxi_A Negative regulator of g 96.8 0.0015 5.2E-08 60.3 5.9 39 102-140 522-560 (758)
378 3hws_A ATP-dependent CLP prote 96.8 0.00099 3.4E-08 56.0 4.3 26 100-125 50-75 (363)
379 1um8_A ATP-dependent CLP prote 96.8 0.0013 4.4E-08 55.5 4.9 35 101-138 72-106 (376)
380 3igf_A ALL4481 protein; two-do 96.8 0.00081 2.8E-08 57.5 3.7 37 101-137 2-38 (374)
381 2wjy_A Regulator of nonsense t 96.8 0.0029 1E-07 59.1 7.7 55 102-159 372-427 (800)
382 1sxj_A Activator 1 95 kDa subu 96.8 0.0013 4.6E-08 58.1 5.1 40 100-142 76-115 (516)
383 2qag_C Septin-7; cell cycle, c 96.8 0.00046 1.6E-08 59.9 2.0 25 102-126 32-56 (418)
384 3eie_A Vacuolar protein sortin 96.8 0.0021 7E-08 53.2 5.9 27 99-125 49-75 (322)
385 4b4t_I 26S protease regulatory 96.8 0.0019 6.5E-08 56.3 5.9 29 98-126 213-241 (437)
386 3gmt_A Adenylate kinase; ssgci 96.8 0.00093 3.2E-08 53.5 3.6 38 101-142 8-45 (230)
387 1udx_A The GTP-binding protein 96.7 0.00024 8.1E-09 61.7 0.1 31 94-124 150-180 (416)
388 2ce7_A Cell division protein F 96.7 0.0019 6.5E-08 56.9 5.9 24 102-125 50-73 (476)
389 2ygr_A Uvrabc system protein A 96.7 0.00027 9.2E-09 67.3 0.4 30 93-122 660-689 (993)
390 2zej_A Dardarin, leucine-rich 96.7 0.00063 2.1E-08 51.2 2.4 22 103-124 4-25 (184)
391 1ihu_A Arsenical pump-driving 96.7 0.0021 7.2E-08 57.6 6.2 40 101-140 327-366 (589)
392 1ypw_A Transitional endoplasmi 96.7 0.00088 3E-08 62.6 3.8 31 96-126 233-263 (806)
393 2qmh_A HPR kinase/phosphorylas 96.7 0.001 3.5E-08 52.3 3.5 26 100-125 33-58 (205)
394 4b4t_H 26S protease regulatory 96.7 0.0013 4.3E-08 57.9 4.5 29 98-126 240-268 (467)
395 1sxj_D Activator 1 41 kDa subu 96.7 0.0011 3.9E-08 54.7 4.0 23 104-126 61-83 (353)
396 3upu_A ATP-dependent DNA helic 96.7 0.0016 5.4E-08 56.7 5.0 38 103-141 47-85 (459)
397 1c9k_A COBU, adenosylcobinamid 96.7 0.002 6.9E-08 49.6 5.0 31 103-137 1-31 (180)
398 1svi_A GTP-binding protein YSX 96.7 0.0011 3.9E-08 49.8 3.5 26 99-124 21-46 (195)
399 2lkc_A Translation initiation 96.7 0.0013 4.4E-08 48.6 3.7 25 99-123 6-30 (178)
400 4b4t_J 26S protease regulatory 96.7 0.0019 6.6E-08 55.8 5.3 28 99-126 180-207 (405)
401 2dyk_A GTP-binding protein; GT 96.7 0.0012 4.2E-08 47.8 3.5 22 103-124 3-24 (161)
402 3lxx_A GTPase IMAP family memb 96.6 0.00087 3E-08 52.9 2.7 26 99-124 27-52 (239)
403 2r6f_A Excinuclease ABC subuni 96.6 0.00026 8.8E-09 67.2 -0.4 30 93-122 642-671 (972)
404 2j9r_A Thymidine kinase; TK1, 96.6 0.0039 1.3E-07 49.3 6.5 39 98-136 25-63 (214)
405 1q57_A DNA primase/helicase; d 96.6 0.0015 5E-08 57.6 4.4 43 98-140 239-282 (503)
406 2c9o_A RUVB-like 1; hexameric 96.6 0.0018 6.3E-08 56.3 5.0 28 100-127 62-89 (456)
407 3auy_A DNA double-strand break 96.6 0.0013 4.6E-08 55.6 4.0 25 101-125 25-49 (371)
408 1w5s_A Origin recognition comp 96.6 0.0034 1.1E-07 52.8 6.5 38 100-137 49-94 (412)
409 2r2a_A Uncharacterized protein 96.6 0.0016 5.4E-08 50.8 4.1 39 101-139 5-49 (199)
410 1qvr_A CLPB protein; coiled co 96.6 0.0021 7.1E-08 60.3 5.6 39 102-140 589-627 (854)
411 1p5z_B DCK, deoxycytidine kina 96.6 0.00039 1.3E-08 55.9 0.5 28 99-126 22-49 (263)
412 2ce2_X GTPase HRAS; signaling 96.6 0.0011 3.8E-08 47.9 3.0 23 102-124 4-26 (166)
413 2r62_A Cell division protease 96.6 0.00061 2.1E-08 54.5 1.7 24 103-126 46-69 (268)
414 1kao_A RAP2A; GTP-binding prot 96.6 0.0013 4.3E-08 47.7 3.3 23 102-124 4-26 (167)
415 3k53_A Ferrous iron transport 96.6 0.0011 3.8E-08 53.5 3.2 23 102-124 4-26 (271)
416 1nrj_B SR-beta, signal recogni 96.6 0.0015 5.1E-08 50.3 3.8 26 100-125 11-36 (218)
417 1z2a_A RAS-related protein RAB 96.6 0.0013 4.6E-08 47.8 3.3 24 101-124 5-28 (168)
418 3clv_A RAB5 protein, putative; 96.6 0.002 6.7E-08 48.2 4.2 25 100-124 6-30 (208)
419 3pqc_A Probable GTP-binding pr 96.6 0.0016 5.4E-08 48.7 3.6 25 100-124 22-46 (195)
420 1upt_A ARL1, ADP-ribosylation 96.6 0.0018 6.1E-08 47.4 3.8 24 100-123 6-29 (171)
421 1ky3_A GTP-binding protein YPT 96.6 0.0014 4.9E-08 48.3 3.3 25 100-124 7-31 (182)
422 3pfi_A Holliday junction ATP-d 96.6 0.0026 8.9E-08 52.5 5.2 25 101-125 55-79 (338)
423 1u8z_A RAS-related protein RAL 96.5 0.0015 5.1E-08 47.4 3.3 23 102-124 5-27 (168)
424 1g41_A Heat shock protein HSLU 96.5 0.0022 7.5E-08 56.1 4.7 26 101-126 50-75 (444)
425 3pih_A Uvrabc system protein A 96.5 0.00071 2.4E-08 64.1 1.6 26 93-118 602-627 (916)
426 2fn4_A P23, RAS-related protei 96.5 0.0018 6E-08 47.8 3.5 25 100-124 8-32 (181)
427 1z0j_A RAB-22, RAS-related pro 96.5 0.0015 5.1E-08 47.6 3.1 23 102-124 7-29 (170)
428 1m2o_B GTP-binding protein SAR 96.5 0.0016 5.4E-08 49.4 3.3 23 101-123 23-45 (190)
429 1moz_A ARL1, ADP-ribosylation 96.5 0.0013 4.5E-08 48.8 2.8 24 99-122 16-39 (183)
430 2xzl_A ATP-dependent helicase 96.5 0.006 2.1E-07 57.0 7.8 55 102-159 376-431 (802)
431 1ek0_A Protein (GTP-binding pr 96.5 0.0016 5.3E-08 47.4 3.1 23 102-124 4-26 (170)
432 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0016 5.3E-08 48.1 3.1 24 101-124 7-30 (177)
433 1ypw_A Transitional endoplasmi 96.5 0.00092 3.1E-08 62.5 2.2 29 98-126 508-536 (806)
434 1g16_A RAS-related protein SEC 96.5 0.0017 5.8E-08 47.3 3.2 22 102-123 4-25 (170)
435 2qp9_X Vacuolar protein sortin 96.5 0.0021 7.3E-08 54.1 4.2 27 100-126 83-109 (355)
436 1z08_A RAS-related protein RAB 96.5 0.0016 5.5E-08 47.6 3.1 24 101-124 6-29 (170)
437 1hqc_A RUVB; extended AAA-ATPa 96.5 0.0025 8.4E-08 52.1 4.5 25 101-125 38-62 (324)
438 3hdt_A Putative kinase; struct 96.5 0.0014 4.7E-08 52.0 2.8 37 100-141 13-49 (223)
439 1c1y_A RAS-related protein RAP 96.5 0.0017 5.8E-08 47.2 3.1 23 102-124 4-26 (167)
440 1sxj_B Activator 1 37 kDa subu 96.4 0.0019 6.5E-08 52.5 3.6 24 104-127 45-68 (323)
441 1r2q_A RAS-related protein RAB 96.4 0.0017 5.9E-08 47.2 3.1 23 101-123 6-28 (170)
442 1w36_D RECD, exodeoxyribonucle 96.4 0.0028 9.6E-08 57.3 5.1 42 101-143 164-209 (608)
443 2nzj_A GTP-binding protein REM 96.4 0.0019 6.3E-08 47.4 3.2 24 101-124 4-27 (175)
444 2erx_A GTP-binding protein DI- 96.4 0.0015 5.3E-08 47.6 2.7 22 102-123 4-25 (172)
445 1e9r_A Conjugal transfer prote 96.4 0.0032 1.1E-07 54.2 5.0 37 101-137 53-89 (437)
446 3u61_B DNA polymerase accessor 96.4 0.0036 1.2E-07 51.4 5.2 39 100-141 47-85 (324)
447 1fzq_A ADP-ribosylation factor 96.4 0.0022 7.7E-08 48.1 3.6 25 100-124 15-39 (181)
448 3q85_A GTP-binding protein REM 96.4 0.0018 6.2E-08 47.3 2.9 21 103-123 4-24 (169)
449 2zan_A Vacuolar protein sortin 96.4 0.0028 9.7E-08 55.0 4.6 27 99-125 165-191 (444)
450 3cmu_A Protein RECA, recombina 96.4 0.0028 9.6E-08 64.3 5.1 41 99-139 1425-1465(2050)
451 1iqp_A RFCS; clamp loader, ext 96.4 0.002 6.9E-08 52.4 3.4 25 103-127 48-72 (327)
452 3q72_A GTP-binding protein RAD 96.4 0.0017 5.8E-08 47.3 2.7 22 102-123 3-24 (166)
453 3vfd_A Spastin; ATPase, microt 96.4 0.0036 1.2E-07 53.1 5.0 37 100-139 147-183 (389)
454 3bwd_D RAC-like GTP-binding pr 96.4 0.0025 8.5E-08 47.1 3.6 24 100-123 7-30 (182)
455 3bc1_A RAS-related protein RAB 96.4 0.002 6.8E-08 48.0 3.1 23 101-123 11-33 (195)
456 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0019 6.4E-08 48.1 2.9 24 101-124 4-27 (189)
457 2gf0_A GTP-binding protein DI- 96.4 0.0029 1E-07 47.5 4.0 24 100-123 7-30 (199)
458 3con_A GTPase NRAS; structural 96.4 0.002 6.9E-08 48.2 3.1 24 101-124 21-44 (190)
459 3pvs_A Replication-associated 96.4 0.0077 2.6E-07 52.5 7.2 25 102-126 51-75 (447)
460 2hxs_A RAB-26, RAS-related pro 96.4 0.0022 7.6E-08 47.2 3.3 23 101-123 6-28 (178)
461 2y8e_A RAB-protein 6, GH09086P 96.3 0.002 7E-08 47.3 3.0 22 102-123 15-36 (179)
462 1f6b_A SAR1; gtpases, N-termin 96.3 0.0022 7.4E-08 49.0 3.2 23 101-123 25-47 (198)
463 1r8s_A ADP-ribosylation factor 96.3 0.0021 7.3E-08 46.7 3.1 22 103-124 2-23 (164)
464 2oil_A CATX-8, RAS-related pro 96.3 0.0021 7.1E-08 48.4 3.1 24 101-124 25-48 (193)
465 2qtf_A Protein HFLX, GTP-bindi 96.3 0.003 1E-07 53.6 4.4 24 102-125 180-203 (364)
466 2p5s_A RAS and EF-hand domain 96.3 0.0026 8.9E-08 48.3 3.6 25 99-123 26-50 (199)
467 1z0f_A RAB14, member RAS oncog 96.3 0.0023 7.8E-08 47.0 3.1 24 101-124 15-38 (179)
468 3pxg_A Negative regulator of g 96.3 0.003 1E-07 55.2 4.3 27 101-127 201-227 (468)
469 2a9k_A RAS-related protein RAL 96.3 0.0023 7.8E-08 47.4 3.1 24 101-124 18-41 (187)
470 2cxx_A Probable GTP-binding pr 96.3 0.0021 7.3E-08 47.9 2.9 22 103-124 3-24 (190)
471 2g6b_A RAS-related protein RAB 96.3 0.0024 8.3E-08 47.1 3.1 24 101-124 10-33 (180)
472 2bme_A RAB4A, RAS-related prot 96.3 0.0024 8.2E-08 47.5 3.0 24 101-124 10-33 (186)
473 1ojl_A Transcriptional regulat 96.3 0.0032 1.1E-07 52.0 4.0 40 102-141 26-65 (304)
474 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0024 8.3E-08 47.8 3.0 24 101-124 7-30 (184)
475 2atv_A RERG, RAS-like estrogen 96.2 0.0033 1.1E-07 47.5 3.8 25 100-124 27-51 (196)
476 3kkq_A RAS-related protein M-R 96.2 0.0032 1.1E-07 46.7 3.7 25 100-124 17-41 (183)
477 2xau_A PRE-mRNA-splicing facto 96.2 0.0061 2.1E-07 56.7 6.2 56 101-158 109-167 (773)
478 2xtp_A GTPase IMAP family memb 96.2 0.0025 8.5E-08 50.8 3.2 25 100-124 21-45 (260)
479 3tw8_B RAS-related protein RAB 96.2 0.0022 7.6E-08 47.2 2.7 23 101-123 9-31 (181)
480 3t5g_A GTP-binding protein RHE 96.2 0.0021 7.3E-08 47.6 2.6 23 101-123 6-28 (181)
481 2efe_B Small GTP-binding prote 96.2 0.0026 8.9E-08 47.0 3.1 24 101-124 12-35 (181)
482 1jr3_A DNA polymerase III subu 96.2 0.0031 1.1E-07 52.4 3.7 27 101-127 38-64 (373)
483 2iwr_A Centaurin gamma 1; ANK 96.2 0.0027 9.4E-08 46.9 3.1 24 101-124 7-30 (178)
484 2bov_A RAla, RAS-related prote 96.2 0.0033 1.1E-07 47.5 3.6 24 101-124 14-37 (206)
485 1mky_A Probable GTP-binding pr 96.2 0.0029 9.9E-08 54.8 3.6 26 100-125 179-204 (439)
486 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0028 9.5E-08 46.9 3.1 23 102-124 6-28 (186)
487 3cmw_A Protein RECA, recombina 96.2 0.0042 1.4E-07 62.2 5.1 42 99-140 730-771 (1706)
488 3iev_A GTP-binding protein ERA 96.2 0.0021 7.2E-08 53.1 2.5 27 98-124 7-33 (308)
489 3tkl_A RAS-related protein RAB 96.2 0.003 1E-07 47.3 3.2 24 101-124 16-39 (196)
490 1ksh_A ARF-like protein 2; sma 96.2 0.0034 1.1E-07 46.8 3.4 25 99-123 16-40 (186)
491 3fdi_A Uncharacterized protein 96.2 0.003 1E-07 49.0 3.2 26 101-126 6-31 (201)
492 3ihw_A Centg3; RAS, centaurin, 96.2 0.0029 9.8E-08 47.7 3.1 25 100-124 19-43 (184)
493 2gf9_A RAS-related protein RAB 96.2 0.0029 1E-07 47.4 3.1 24 101-124 22-45 (189)
494 1vg8_A RAS-related protein RAB 96.2 0.0032 1.1E-07 47.7 3.3 25 100-124 7-31 (207)
495 2fg5_A RAB-22B, RAS-related pr 96.2 0.0029 9.9E-08 47.7 3.0 24 101-124 23-46 (192)
496 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0071 2.4E-07 55.7 6.1 35 101-138 488-522 (758)
497 3oes_A GTPase rhebl1; small GT 96.1 0.0032 1.1E-07 47.9 3.2 25 100-124 23-47 (201)
498 1w4r_A Thymidine kinase; type 96.1 0.0091 3.1E-07 46.5 5.8 39 99-137 18-56 (195)
499 1zj6_A ADP-ribosylation factor 96.1 0.004 1.4E-07 46.6 3.6 24 100-123 15-38 (187)
500 2fh5_B SR-beta, signal recogni 96.1 0.0035 1.2E-07 48.0 3.3 24 101-124 7-30 (214)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.97 E-value=3.7e-30 Score=225.78 Aligned_cols=184 Identities=33% Similarity=0.596 Sum_probs=161.6
Q ss_pred CchHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHH
Q psy4311 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVY 80 (190)
Q Consensus 1 m~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 80 (190)
|||++|++++.++|+++.+.+.+++++++++++||+.+|+++||+.+++..+.+++++....+++....++.+.+...+.
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~ 80 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVY 80 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877777677778888999999
Q ss_pred HHHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCcee
Q psy4311 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFY 160 (190)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~ 160 (190)
+++.+++++....... ..+|.+++++|++||||||++.+||.++..+|++|.++++|+||+++++||+.|++..++|++
T Consensus 81 ~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 81 EELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp HHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 9999999863222222 236899999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCc------c-----cccCceeeCCCCccc
Q psy4311 161 GSSKGKRNP------I-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 161 ~~~~~~~~~------l-----~~~~lvlid~~~r~~ 185 (190)
......++. + +.+|++++||+|+..
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 765443321 1 237999999999864
No 2
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.96 E-value=6.7e-28 Score=204.68 Aligned_cols=184 Identities=30% Similarity=0.445 Sum_probs=153.5
Q ss_pred CchHHHHHHHHHHHHH-------------------hhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhh
Q psy4311 1 MVLADLGRKITSALRS-------------------LSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVID 61 (190)
Q Consensus 1 m~~~~l~~~i~~~~~~-------------------l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~ 61 (190)
+||++|.+++++..++ ..+...++++++++++++++.+|+++||+.+++++|++++++.+.
T Consensus 6 ~mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~ 85 (328)
T 3e70_C 6 SMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLV 85 (328)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 3789999888766653 233677999999999999999999999999999999999999988
Q ss_pred hccccchhhHHHHHHHHHHHHHHhhcCCCCcccCC-----CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQP-----QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 62 ~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~-----~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
.+++..+.++.+.+...+++++.+++++.. .+++ ..++|.+++|+|||||||||++++|++++.+.+++|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 86 GKKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp TCEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hcccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 888877788888899999999999998743 2222 4467999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHhhhcCCceeecCCCCCCcc-----------cccCceeeCCCCccc
Q psy4311 137 ADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI-----------HNMGLSLIPTYEKSF 185 (190)
Q Consensus 137 ~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l-----------~~~~lvlid~~~r~~ 185 (190)
.|+||.++.+|++.|+++.+++++.+.....+.. ...+++++|+.|+..
T Consensus 165 ~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~ 224 (328)
T 3e70_C 165 SDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSE 224 (328)
T ss_dssp ECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCC
T ss_pred ecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchh
Confidence 9999999999999999999999887765554332 235778999998753
No 3
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.96 E-value=2.3e-27 Score=207.44 Aligned_cols=182 Identities=31% Similarity=0.402 Sum_probs=161.2
Q ss_pred chHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
||++|++++.++++++.+++.++++++++++++++.+|+++||+.++++++++++++....+++..+.++.+.+...+.+
T Consensus 1 m~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (425)
T 2ffh_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYE 80 (425)
T ss_dssp CCHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999988887777777788889999999
Q ss_pred HHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceee
Q psy4311 82 ELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161 (190)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~ 161 (190)
++...+++...++++. ++.+++++|++|+||||++.+||.++.+.+++|.++++|++|+++.+|++.+++..++|++.
T Consensus 81 ~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 9999998654556665 78999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCC------cc-----cccCceeeCCCCccc
Q psy4311 162 SSKGKRN------PI-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 162 ~~~~~~~------~l-----~~~~lvlid~~~r~~ 185 (190)
.....++ .+ ..+|++++||+|+..
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQ 193 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccc
Confidence 6443221 11 347899999999864
No 4
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.96 E-value=1e-27 Score=210.36 Aligned_cols=184 Identities=26% Similarity=0.387 Sum_probs=158.1
Q ss_pred chHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
||++|++++.++++++.+++.++++++++++++++.+|+++||+.++++++++++++....+++..+.++.+.+...+.+
T Consensus 1 m~~~l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
T 2xxa_A 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (433)
T ss_dssp ---CHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999988877776666677778889999
Q ss_pred HHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEeccCCChhHHHHHHHHhhhcCCcee
Q psy4311 82 ELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCADTFRAGAYDQLKQNATKARIPFY 160 (190)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~ 160 (190)
++.+++++...++.+...++.+++++|++|+||||++.+||.++... |++|.++++|++|.++.+|++.++...+++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp HHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 99999987655555555678899999999999999999999999988 99999999999999999999999999999988
Q ss_pred ecCCCCCC---------cc--cccCceeeCCCCccc
Q psy4311 161 GSSKGKRN---------PI--HNMGLSLIPTYEKSF 185 (190)
Q Consensus 161 ~~~~~~~~---------~l--~~~~lvlid~~~r~~ 185 (190)
......++ .+ ..+|++++|++|+..
T Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLH 196 (433)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCT
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 75432221 11 347899999998754
No 5
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.95 E-value=8.1e-27 Score=195.53 Aligned_cols=181 Identities=31% Similarity=0.491 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHH
Q psy4311 4 ADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKEL 83 (190)
Q Consensus 4 ~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 83 (190)
++|+++|.++++++.+++.++++.+++++++++.+|+++||+.++++++++++++....+++....++.+.+...+.+++
T Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (297)
T 1j8m_F 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDEL 80 (297)
T ss_dssp --CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999988877766666667777888899999
Q ss_pred HhhcCCCCcc-cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeec
Q psy4311 84 IKLVDPGVKA-HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162 (190)
Q Consensus 84 ~~~l~~~~~~-~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~ 162 (190)
...+++...+ +++..+ +.+++++|++|+||||++.+|+..+...+++|.++++|++|+++.+|++.++++.+++++..
T Consensus 81 ~~~~~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 81 SNLFGGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp HHHTTCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 9999875555 666654 89999999999999999999999999999999999999999999999999999999998775
Q ss_pred CCCCCC------c---c--cccCceeeCCCCccc
Q psy4311 163 SKGKRN------P---I--HNMGLSLIPTYEKSF 185 (190)
Q Consensus 163 ~~~~~~------~---l--~~~~lvlid~~~r~~ 185 (190)
....++ . + ..+|++++|++|+..
T Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 160 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 322221 1 1 457899999999865
No 6
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.95 E-value=4.2e-27 Score=206.16 Aligned_cols=177 Identities=32% Similarity=0.503 Sum_probs=152.3
Q ss_pred HHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcC
Q psy4311 9 KITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVD 88 (190)
Q Consensus 9 ~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~ 88 (190)
++.++|+++.+.+.+++++++++++|++.+|+++||+.+++..+.+++++....+++....++.+.+...+.+++.++++
T Consensus 5 ~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~ 84 (433)
T 3kl4_A 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 84 (433)
T ss_dssp THHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcC
Confidence 45678888999999999999999999999999999999999999999999888777777777888899999999999998
Q ss_pred CCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCC
Q psy4311 89 PGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRN 168 (190)
Q Consensus 89 ~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~ 168 (190)
+..........+|.+++++|||||||||++.+||.++.+.|++|.++++|+||+++++|++.+++..++|++......++
T Consensus 85 ~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp 164 (433)
T 3kl4_A 85 GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNP 164 (433)
T ss_dssp SSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCH
T ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCH
Confidence 64333223334689999999999999999999999999999999999999999999999999999999998876544332
Q ss_pred c-----------ccccCceeeCCCCccc
Q psy4311 169 P-----------IHNMGLSLIPTYEKSF 185 (190)
Q Consensus 169 ~-----------l~~~~lvlid~~~r~~ 185 (190)
. .+.+|++++|++|+..
T Consensus 165 ~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 165 IEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 1 1357899999999864
No 7
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.95 E-value=1e-27 Score=213.61 Aligned_cols=185 Identities=74% Similarity=1.109 Sum_probs=152.9
Q ss_pred CchHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHH
Q psy4311 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVY 80 (190)
Q Consensus 1 m~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 80 (190)
|||++|+++|.++++++.+.+.++++.+++++++++.+|+++||+.+++.++.+++++....+++..+.++.+.+...++
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (504)
T 2j37_W 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVF 80 (504)
T ss_dssp -------CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999987777666666677778888999
Q ss_pred HHHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCcee
Q psy4311 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFY 160 (190)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~ 160 (190)
+++.+++++....+.+...++.+|+|+|++||||||++.+|+.++...|.+|.++++|+||+++.+|++.++.+.++|++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 99999998765555544466889999999999999999999999998899999999999999999999999999999987
Q ss_pred ecCCCCCC------c---c--cccCceeeCCCCccc
Q psy4311 161 GSSKGKRN------P---I--HNMGLSLIPTYEKSF 185 (190)
Q Consensus 161 ~~~~~~~~------~---l--~~~~lvlid~~~r~~ 185 (190)
......++ . + ..+|++++||+|+..
T Consensus 161 ~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHK 196 (504)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcc
Confidence 75333221 0 1 457899999999863
No 8
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.94 E-value=4e-26 Score=200.14 Aligned_cols=183 Identities=37% Similarity=0.569 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHH
Q psy4311 3 LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKE 82 (190)
Q Consensus 3 ~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 82 (190)
|++|+++|.++++++.+.+.++++++++.++|++.+|+++||+..+++++.+.+++.....+..+..++.+.+...+.++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T 2v3c_C 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEE 80 (432)
T ss_dssp CCHHHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998876655555666777788889999
Q ss_pred HHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeec
Q psy4311 83 LIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162 (190)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~ 162 (190)
+.++++....++.+...++.+++++|++|+||||++.+|+.++...|++|.++++|+||+++.+||+.++...++|++..
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 99999865444544445578999999999999999999999999889999999999999999999999999999998875
Q ss_pred C-CCCCC------c---ccccCceeeCCCCccc
Q psy4311 163 S-KGKRN------P---IHNMGLSLIPTYEKSF 185 (190)
Q Consensus 163 ~-~~~~~------~---l~~~~lvlid~~~r~~ 185 (190)
. ...++ . +..+|++++|++|+..
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 161 ETRTKSPVDIVKEGMEKFKKADVLIIDTAGRHK 193 (432)
T ss_dssp SSSCCSSSTTHHHHHHTTSSCSEEEEECCCSCS
T ss_pred CCCCCCHHHHHHHHHHHhhCCCEEEEcCCCCcc
Confidence 4 22221 1 2457899999999764
No 9
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=1.7e-25 Score=191.85 Aligned_cols=178 Identities=23% Similarity=0.279 Sum_probs=146.1
Q ss_pred CchHHHHHHHHHHHHHhh-------cCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHH
Q psy4311 1 MVLADLGRKITSALRSLS-------NATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRR 73 (190)
Q Consensus 1 m~~~~l~~~i~~~~~~l~-------~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 73 (190)
++|++|++++.+..+++. +.+.+| +++.+++++++|+++||+.+++++|++++++....+++. +.+
T Consensus 55 ~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~----~~~ 127 (359)
T 2og2_A 55 SDVEKVFSGFSKTRENLAVIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLK----SGS 127 (359)
T ss_dssp CHHHHHHHHTHHHHHHHTHHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC----SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC----CHH
Confidence 468899999988887775 344444 567889999999999999999999999999887765542 345
Q ss_pred HHHHHHHHHHHhhcCCCC--cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHH
Q psy4311 74 MIQSSVYKELIKLVDPGV--KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQN 151 (190)
Q Consensus 74 ~i~~~l~~~l~~~l~~~~--~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~ 151 (190)
.+...+.+++.+++++.. .++++..++|.+++++|||||||||++++|++++.+.+++|.+.+.|+||.++.+|++.|
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~ 207 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 207 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHH
Confidence 678889999999998765 567777888999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCceeecCCC-CCCc------c-----cccCceeeCCCCccc
Q psy4311 152 ATKARIPFYGSSKG-KRNP------I-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 152 ~~~~~i~~~~~~~~-~~~~------l-----~~~~lvlid~~~r~~ 185 (190)
+.+.+++++.+... ..+. + ...+.+++|+.++..
T Consensus 208 ~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~ 253 (359)
T 2og2_A 208 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLH 253 (359)
T ss_dssp HHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred HHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCCh
Confidence 98889998876544 3321 1 124567889988754
No 10
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.93 E-value=1.5e-24 Score=182.14 Aligned_cols=175 Identities=23% Similarity=0.302 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHhhc-CCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 3 LADLGRKITSALRSLSN-ATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 3 ~~~l~~~i~~~~~~l~~-~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
|....+.|. .++++.. .+.+| +++.+++++++|+++||+.+++++|++++++....+++. +.+.+...+.+
T Consensus 7 l~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 78 (302)
T 3b9q_A 7 FSKTRENLA-VIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLK----SGSEIKDALKE 78 (302)
T ss_dssp THHHHHHHT-HHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC----SHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHH
Confidence 455566666 6776664 56676 446789999999999999999999999999877665442 33567788999
Q ss_pred HHHhhcCCCC--cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCce
Q psy4311 82 ELIKLVDPGV--KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF 159 (190)
Q Consensus 82 ~l~~~l~~~~--~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~ 159 (190)
++.+.+++.. .++++..++|.+++++|||||||||++++|++++++.+++|.+.+.|+||.++.+|++.|+.+.++++
T Consensus 79 ~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~ 158 (302)
T 3b9q_A 79 SVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp HHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceE
Confidence 9999998754 56777778899999999999999999999999999999999999999999999999999998888988
Q ss_pred eecCCC-CCCc------c-----cccCceeeCCCCccc
Q psy4311 160 YGSSKG-KRNP------I-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 160 ~~~~~~-~~~~------l-----~~~~lvlid~~~r~~ 185 (190)
+.+... ..+. + ...+.+++|+.++..
T Consensus 159 v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~ 196 (302)
T 3b9q_A 159 VVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLH 196 (302)
T ss_dssp ECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSS
T ss_pred EEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCc
Confidence 876544 3321 1 124567889988754
No 11
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.93 E-value=1.2e-24 Score=184.13 Aligned_cols=174 Identities=24% Similarity=0.359 Sum_probs=143.6
Q ss_pred chHHHHHHHHHHHHHhhcC-CccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNA-TVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVY 80 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~-~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 80 (190)
.|..+++++.+.++++.+. +.++++ .+++++.+|+++||+.+++++|+++++++...+++.++ +...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 79 (320)
T 1zu4_A 10 AMLKSAFNFSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFEN------IKDALV 79 (320)
T ss_dssp HTHHHHHHHHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHH------HHHHHH
Confidence 3678888999999988875 778876 57899999999999999999999999988766554321 777888
Q ss_pred HHHHhhcCCCC-----cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhh--
Q psy4311 81 KELIKLVDPGV-----KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNAT-- 153 (190)
Q Consensus 81 ~~l~~~l~~~~-----~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~-- 153 (190)
+++.+++++.. .++++..+++.+++++|+||+||||++++||.++.+.+++|.++++|++|.++.+|+..|++
T Consensus 80 ~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~ 159 (320)
T 1zu4_A 80 ESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTR 159 (320)
T ss_dssp HHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTT
T ss_pred HHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhcc
Confidence 99999887654 56777778899999999999999999999999999999999999999999999999999987
Q ss_pred -hcCCcee-ecCCCCCCc-----------ccccCceeeCCCCccc
Q psy4311 154 -KARIPFY-GSSKGKRNP-----------IHNMGLSLIPTYEKSF 185 (190)
Q Consensus 154 -~~~i~~~-~~~~~~~~~-----------l~~~~lvlid~~~r~~ 185 (190)
+.++++. .+....++. .+.+|+|++|++|+..
T Consensus 160 ~~~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~ 204 (320)
T 1zu4_A 160 LNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQ 204 (320)
T ss_dssp SCTTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGG
T ss_pred ccCCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 7788877 333222211 1347999999999864
No 12
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.92 E-value=1.4e-23 Score=175.49 Aligned_cols=182 Identities=31% Similarity=0.402 Sum_probs=149.9
Q ss_pred chHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
||+.|++++.+.++++.+++.++++.+.+++++++..|+.+|++..++.++++++.....++.......+.+.+.....+
T Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (295)
T 1ls1_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE 80 (295)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999998765554433223343456666777
Q ss_pred HHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceee
Q psy4311 82 ELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161 (190)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~ 161 (190)
.+...+++...++++. ++++++++|+||+||||++.+||+.+.+.+++|.++++|.+|.++.+|+..+++..++++..
T Consensus 81 ~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 7777776543455565 78999999999999999999999999999999999999999999999999998888998886
Q ss_pred cCCCCCC------cc-----cccCceeeCCCCccc
Q psy4311 162 SSKGKRN------PI-----HNMGLSLIPTYEKSF 185 (190)
Q Consensus 162 ~~~~~~~------~l-----~~~~lvlid~~~r~~ 185 (190)
.....++ .+ ..+|++++|++|+..
T Consensus 159 ~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~ 193 (295)
T 1ls1_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQ 193 (295)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 4332221 11 347999999998754
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.92 E-value=5.6e-25 Score=184.90 Aligned_cols=172 Identities=25% Similarity=0.348 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHH
Q psy4311 2 VLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK 81 (190)
Q Consensus 2 ~~~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 81 (190)
+|+.|++++.+.++++.++..+++ .+++.+++++++|+++||+.+++++|++++++... +.+...+.+
T Consensus 3 ~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 70 (304)
T 1rj9_A 3 FFDRLKAGLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKE 70 (304)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 789999999999999998777777 66899999999999999999999999999987644 135567888
Q ss_pred HHHhhcCCCCc-----ccCCCC-------CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHH
Q psy4311 82 ELIKLVDPGVK-----AHQPQK-------GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLK 149 (190)
Q Consensus 82 ~l~~~l~~~~~-----~~~~~~-------~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~ 149 (190)
++.+++++... ++.+.. ++|++++++|||||||||++++|++++.+.+++|.+.+.|++|.++.+|++
T Consensus 71 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~ 150 (304)
T 1rj9_A 71 KLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 150 (304)
T ss_dssp HHTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHH
T ss_pred HHHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHH
Confidence 88888876542 333322 368899999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCceeecCCCCCCcc-----------cccCceeeCCCCccc
Q psy4311 150 QNATKARIPFYGSSKGKRNPI-----------HNMGLSLIPTYEKSF 185 (190)
Q Consensus 150 ~~~~~~~i~~~~~~~~~~~~l-----------~~~~lvlid~~~r~~ 185 (190)
.|+++.+++++.+.....+.. ...+.+++|+.++..
T Consensus 151 ~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~ 197 (304)
T 1rj9_A 151 EWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLH 197 (304)
T ss_dssp HHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCT
T ss_pred HHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Confidence 998888898887655443221 235677899988753
No 14
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.92 E-value=2.4e-24 Score=190.89 Aligned_cols=166 Identities=25% Similarity=0.352 Sum_probs=135.8
Q ss_pred HHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCC
Q psy4311 12 SALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGV 91 (190)
Q Consensus 12 ~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~ 91 (190)
+.+.++.+.+.+|++ .+++|+.+|+++||+.+++.+|+++++.......+.. .+.+...+.++|.+++.+..
T Consensus 212 ~~l~~~~~~~~ide~----~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~ 283 (503)
T 2yhs_A 212 SGFISLFRGKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRD----AEALYGLLKEEMGEILAKVD 283 (503)
T ss_dssp THHHHHHTTCBCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCB----GGGHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHhccCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHhCCCC
Confidence 345555555678875 5789999999999999999999999998776544322 23566778888888887766
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCc--
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNP-- 169 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~-- 169 (190)
.++++...+|.+++|+|+|||||||++++|++++.+.+++|.+.++|+||.++.+|++.|+.+.+++++.+.....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 678888889999999999999999999999999999999999999999999999999999888889888765443321
Q ss_pred ---------ccccCceeeCCCCccc
Q psy4311 170 ---------IHNMGLSLIPTYEKSF 185 (190)
Q Consensus 170 ---------l~~~~lvlid~~~r~~ 185 (190)
...+|++++|+.||..
T Consensus 364 V~e~l~~a~~~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 364 IFDAIQAAKARNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCSCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccc
Confidence 1337889999999853
No 15
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.92 E-value=8.4e-24 Score=177.92 Aligned_cols=164 Identities=24% Similarity=0.354 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHhhcCCccCHHhHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHH
Q psy4311 4 ADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKEL 83 (190)
Q Consensus 4 ~~l~~~i~~~~~~l~~~~~i~~~~~~~~l~el~~~L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 83 (190)
...++++.+.++++...+.+|++ .+++++++|+++||+.+++++|++++++ .++. +...+.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~----------~~~~--~~~~~~~~l 87 (306)
T 1vma_A 24 QKTKETFFGRVVKLLKGKKLDDE----TREELEELLIQADVGVETTEYILERLEE----------KDGD--ALESLKEII 87 (306)
T ss_dssp HHHHHHTHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHTT----------CCSC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHh----------cCHH--HHHHHHHHH
Confidence 34455566667776642278874 5799999999999999999999999976 1122 566788999
Q ss_pred HhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecC
Q psy4311 84 IKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSS 163 (190)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~ 163 (190)
.+++++.. ++++...+|.+++++|||||||||++++||+++.+.+++|.++++|+||.++.+|++.|+++.+++++...
T Consensus 88 ~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 88 LEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp HHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred HHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 99998654 55566677899999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCC------c-----ccccCceeeCCCCcc
Q psy4311 164 KGKRN------P-----IHNMGLSLIPTYEKS 184 (190)
Q Consensus 164 ~~~~~------~-----l~~~~lvlid~~~r~ 184 (190)
...++ . ....|++++|++++.
T Consensus 167 s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 167 EGADPAAVAFDAVAHALARNKDVVIIDTAGRL 198 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCSEEEEEECCCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCch
Confidence 33221 1 134688999999874
No 16
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.83 E-value=2.9e-20 Score=155.58 Aligned_cols=152 Identities=21% Similarity=0.253 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHhCCcCHHHHHHHHHHH-HhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCeEEE
Q psy4311 27 VLNSMLKEICAALLEADVNIKLVKKLRENV-RQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIM 105 (190)
Q Consensus 27 ~~~~~l~el~~~L~~~dv~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~ 105 (190)
++++.+++++..|+++||+.++++++++++ +..+..... ++ +.+...+.+++.+++.+.. ...+ ..++.+++
T Consensus 37 ~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~l~~~l~~~~-~~~~-~~~g~vi~ 109 (296)
T 2px0_A 37 VLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGL----TE-ENVVGKLQEILCDMLPSAD-KWQE-PIHSKYIV 109 (296)
T ss_dssp --CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSCC----CT-TTHHHHHHHHHHTTSCCGG-GSCC-CCCSSEEE
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccCC----CH-HHHHHHHHHHHHHHhCCcc-cccc-cCCCcEEE
Confidence 355678999999999999999999999999 555443322 12 3466778888988887543 2322 24678999
Q ss_pred EEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCC-----CcccccCceeeC
Q psy4311 106 FVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKR-----NPIHNMGLSLIP 179 (190)
Q Consensus 106 l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~-----~~l~~~~lvlid 179 (190)
|+|||||||||++++||.++.+ .|.+|.++++|+||.++.+|++.+++..++|+.......+ ..+...|++++|
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dlvIiD 189 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVD 189 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999986 6889999999999999999999999999988754321100 012557999999
Q ss_pred CCCccc
Q psy4311 180 TYEKSF 185 (190)
Q Consensus 180 ~~~r~~ 185 (190)
+.|+..
T Consensus 190 T~G~~~ 195 (296)
T 2px0_A 190 TAGRNF 195 (296)
T ss_dssp CCCCCT
T ss_pred CCCCCh
Confidence 998754
No 17
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.84 E-value=3.5e-10 Score=91.18 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=44.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|.....
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 73 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD 73 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCC
Confidence 4567788899999999999999999999999999998888988877765443
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.75 E-value=9e-10 Score=88.13 Aligned_cols=50 Identities=22% Similarity=0.137 Sum_probs=43.2
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|...
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDY 70 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence 45677778899999999999999999999999998888888887766644
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.72 E-value=1.9e-09 Score=92.42 Aligned_cols=81 Identities=10% Similarity=0.004 Sum_probs=57.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCCCCCccc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIH 171 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~~~~~l~ 171 (190)
+++++..++|++++|+|||||||||++++|++.+.+..++|.+.+.|.......+ ++.+. .++.+..+.....+.++
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~-~~~~r--~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE-LTKAR--RQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH-HHHHH--TTEEEECSSCCCCTTSC
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHHHh--CcEEEEeCCCccCCCCC
Confidence 4567888899999999999999999999999999998889998888876554332 22222 24445555443333344
Q ss_pred ccCc
Q psy4311 172 NMGL 175 (190)
Q Consensus 172 ~~~l 175 (190)
..+.
T Consensus 122 V~en 125 (366)
T 3tui_C 122 VFGN 125 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 20
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.71 E-value=3.8e-08 Score=77.10 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.+++.+++|+|||||||||+++.|++.+.+.|..+..+..|.|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 35689999999999999999999999998766567788887654
No 21
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.69 E-value=2e-09 Score=88.37 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=45.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|.....
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 79 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ 79 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC
Confidence 4567778899999999999999999999999999998899988877765433
No 22
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.67 E-value=3e-09 Score=86.70 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=42.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 4567888899999999999999999999999999888888888776654
No 23
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.64 E-value=2e-09 Score=88.89 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=43.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC
Confidence 4567788899999999999999999999999999888888888777763
No 24
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.64 E-value=3.7e-09 Score=90.43 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=42.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++|+|||||||||++++|++.+.+..++|.+.+.|.
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 456778889999999999999999999999999999888898877765
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.64 E-value=3.2e-09 Score=85.73 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=42.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+...
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN 72 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 45667778899999999999999999999999998888888887766543
No 26
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.64 E-value=2.6e-09 Score=87.45 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=42.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence 4567788899999999999999999999999999888888888766653
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.63 E-value=3.9e-09 Score=85.33 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=42.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 456778889999999999999999999999999988888898866554
No 28
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.63 E-value=4e-09 Score=90.87 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=43.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++++..++|++++|+|||||||||++++|++.+.+..++|.+.+.|..
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECC
Confidence 4567788899999999999999999999999999988888888776654
No 29
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.62 E-value=7.9e-08 Score=74.94 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=40.0
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.+++.+++++|++||||||+++.|+..+.+.++++.+.+.|.+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 356789999999999999999999999988888999998887654
No 30
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.62 E-value=3.2e-09 Score=87.05 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=41.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i 88 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL 88 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEES
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 456778889999999999999999999999999988888888766654
No 31
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.61 E-value=3.9e-09 Score=86.23 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.+..
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV 80 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 4566778899999999999999999999999999888788877665543
No 32
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.60 E-value=1.2e-08 Score=77.51 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=32.3
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
+++..+++.+++|+|||||||||+++.|++.+ +..+.|.
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 34566789999999999999999999999998 6545443
No 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.60 E-value=3.9e-09 Score=85.64 Aligned_cols=50 Identities=24% Similarity=0.226 Sum_probs=43.0
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|...
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~ 75 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 75 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 45677778999999999999999999999999998888888887766543
No 34
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.58 E-value=6.6e-09 Score=88.84 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=42.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECC
Confidence 4567788899999999999999999999999999888888888766653
No 35
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.58 E-value=4.7e-08 Score=82.70 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=41.7
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++...++.+++|+|||||||||++++|++++.+.+++|.+++.|..
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 3556778999999999999999999999999999999999998874
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.58 E-value=3.1e-09 Score=84.61 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=39.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 72 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP 72 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 35567778899999999999999999999999998777777665433
No 37
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.58 E-value=4.5e-09 Score=86.89 Aligned_cols=48 Identities=25% Similarity=0.128 Sum_probs=41.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 456777789999999999999999999999999988888888776664
No 38
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.58 E-value=6e-08 Score=80.82 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=39.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHH--hcCCcEEEEeccCCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYL--KKNWKACLVCADTFR 141 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~--~~~~~v~li~~D~~r 141 (190)
.+++.+++|+|||||||||+++.|++.+. +.++++.+++.|.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 35689999999999999999999999998 778889999888764
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.57 E-value=5.4e-09 Score=85.95 Aligned_cols=49 Identities=24% Similarity=0.169 Sum_probs=42.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV 84 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4567788899999999999999999999999999888888887766653
No 40
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.57 E-value=5.1e-09 Score=85.82 Aligned_cols=48 Identities=15% Similarity=0.047 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.+.
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK 71 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 456778889999999999999999999999999988878887766554
No 41
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.57 E-value=7.5e-09 Score=88.60 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=42.3
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 4567788899999999999999999999999999888888887666653
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.56 E-value=6.5e-09 Score=84.09 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=40.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++++..++ ++++++|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 62 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 3456777788 99999999999999999999999988888887766554
No 43
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.55 E-value=6.4e-09 Score=84.58 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=41.5
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++++..++|++++++|||||||||+++.|++.+.+. ++|.+.+.+.
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEG
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEEC
Confidence 34567777889999999999999999999999999888 8888776664
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.55 E-value=9e-09 Score=83.57 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=41.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHH--HHhcCCcEEEEeccCCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYH--YLKKNWKACLVCADTFR 141 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~--~~~~~~~v~li~~D~~r 141 (190)
.++++..++|++++++|||||||||+++.|++. +.+..++|.+.+.|...
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~ 71 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTT
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCC
Confidence 456677788999999999999999999999998 66777888877666543
No 45
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.54 E-value=4e-08 Score=77.87 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=28.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.+++++..++|++++|+|||||||||+++.|++.+ + +.+.+
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 34667888889999999999999999999999988 4 55665
No 46
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.54 E-value=8.5e-09 Score=83.14 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.4
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.+++++..++|++++++|||||||||+++.|++.+.+..++|.+
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI 64 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEE
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 34567788899999999999999999999999999877666644
No 47
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.53 E-value=8.1e-09 Score=82.78 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=36.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 4566777889999999999999999999999999876666544
No 48
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.53 E-value=6.6e-09 Score=88.51 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=42.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 4567778899999999999999999999999999988888888776654
No 49
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.51 E-value=1.2e-07 Score=73.81 Aligned_cols=39 Identities=36% Similarity=0.390 Sum_probs=33.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++|.+++|+|||||||||+++.|++.+.+ ++.++..|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 56889999999999999999999999864 5788888764
No 50
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.50 E-value=2.8e-07 Score=77.64 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=39.0
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHh--cCCcEEEEeccCCCh
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLK--KNWKACLVCADTFRA 142 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~--~~~~v~li~~D~~r~ 142 (190)
...+.+++|+|||||||||++++|+..+.. .++++.+++.|.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 356789999999999999999999999873 567899999998753
No 51
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.49 E-value=1.5e-07 Score=76.89 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=36.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEeccC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCADT 139 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~D~ 139 (190)
..++.+++++|||||||||+++.|++.+.+. .+++.+.+.+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 3568899999999999999999999999887 78887776553
No 52
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.49 E-value=1.2e-08 Score=83.66 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=39.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH--HhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY--LKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~--~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+ .+..++|.+.+.|.
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 4567778899999999999999999999999984 45667787766554
No 53
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.49 E-value=7.9e-09 Score=86.55 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=44.5
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|.....
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~ 122 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC
Confidence 4567778899999999999999999999999999988888988777765443
No 54
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.48 E-value=1.6e-07 Score=78.65 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=37.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcC--CcEEEEeccCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN--WKACLVCADTF 140 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~--~~v~li~~D~~ 140 (190)
.++|.+++|+|||||||||+++.|++.+.+.. .++.++..|.|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 56789999999999999999999999998753 46888888865
No 55
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.48 E-value=1.2e-08 Score=87.01 Aligned_cols=48 Identities=19% Similarity=0.096 Sum_probs=41.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 79 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 456777889999999999999999999999999988777787765554
No 56
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.48 E-value=1.4e-07 Score=75.69 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=33.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~~ 140 (190)
.++++..+++.+++|+|||||||||+++.|++.+... ..++.++..|.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 3556777889999999999999999999999987421 235667777653
No 57
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.48 E-value=1.7e-08 Score=86.70 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 456778889999999999999999999999999988888887766664
No 58
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.45 E-value=1.5e-08 Score=82.72 Aligned_cols=47 Identities=21% Similarity=0.122 Sum_probs=39.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+ .++|.+.+.|.
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i 83 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV 83 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh
Confidence 456777889999999999999999999999999875 57777766554
No 59
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.45 E-value=1.6e-08 Score=86.88 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=40.8
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++|+|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEEC
Confidence 456777888999999999999999999999999988877787765443
No 60
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.44 E-value=1.8e-08 Score=82.05 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=35.4
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcE
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v 132 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 45667778899999999999999999999999998765554
No 61
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.44 E-value=1.6e-07 Score=71.87 Aligned_cols=43 Identities=35% Similarity=0.397 Sum_probs=38.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..++.+++|+|++||||||+++.|+..+...++++.+++.|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3568899999999999999999999999988888888887754
No 62
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.44 E-value=2.9e-07 Score=71.94 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++|.+++++||||+||||++..++..+.+.++++.+++.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 467899999999999999999999998888889999988764
No 63
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.43 E-value=2.7e-07 Score=78.27 Aligned_cols=43 Identities=21% Similarity=0.466 Sum_probs=37.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++..+++|+|++|+||||++..|+..+...|.+|.+++.|...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~ 119 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSS 119 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 3567999999999999999999999998889999999999543
No 64
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.43 E-value=1.9e-07 Score=72.50 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=34.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++|.+++|+||+||||||+++.|+..+...|..+.+++.|.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3568999999999999999999999999855554445666654
No 65
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.43 E-value=1.1e-08 Score=87.32 Aligned_cols=48 Identities=15% Similarity=-0.003 Sum_probs=41.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|.
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 69 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 356778889999999999999999999999999988878887765554
No 66
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.42 E-value=2.2e-08 Score=83.23 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=37.1
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
..++++..++|++++++|||||||||+++.|++.+.+..++|.
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 96 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 4567788889999999999999999999999999987655554
No 67
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.42 E-value=2.7e-07 Score=73.20 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=32.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHH-hcCCcEEEEeccC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACLVCADT 139 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~li~~D~ 139 (190)
.++|++++++|||||||||+++.++.... ..+..+.++..+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 36789999999999999999999995433 4455566665554
No 68
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.42 E-value=1.3e-07 Score=73.06 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
..+|.+++|+|||||||||+++.|++.+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3568899999999999999999999986
No 69
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.40 E-value=2.5e-08 Score=81.72 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=38.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.++++..+ |++++++|||||||||+++.|++.+ +..++|.+.+.|
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~ 66 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGME 66 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEE
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEE
Confidence 45667788 9999999999999999999999999 877777765443
No 70
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.40 E-value=4.1e-08 Score=84.82 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=43.7
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
.+++++..++|++++|+|||||||||++++|++.+. ..++|.+.+.|.....
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT 88 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC
Confidence 345677888999999999999999999999999887 6788888877765443
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.35 E-value=2.3e-07 Score=73.32 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
+|++++++|||||||||+++.|++. .+..++|.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 5789999999999999999999999 88777764
No 72
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.35 E-value=4.6e-07 Score=76.51 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=40.4
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
...++.+++++|+||+||||++..|+..+.+.+++|.+++.|.++.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 3456889999999999999999999999998899999999998764
No 73
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.34 E-value=1.3e-07 Score=85.35 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=41.4
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhh
Confidence 345566789999999999999999999999999998898988776653
No 74
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.34 E-value=3.8e-07 Score=69.41 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH-hcCCcEEEEecc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACLVCAD 138 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~li~~D 138 (190)
+++..++|+||||+||||+++.+++.+. ..|..+.++...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4478999999999999999999999997 456666666554
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.33 E-value=2.3e-07 Score=72.58 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=25.5
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
..++|++++|+|||||||||++++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999999999874
No 76
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.33 E-value=2.1e-07 Score=71.53 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=24.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
|++++|+|||||||||+++.|++.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999886
No 77
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.32 E-value=2.4e-07 Score=72.24 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=27.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
|.+++++|||||||||++++|++.+. ..+ +.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~ 32 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPV 32 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEE
Confidence 45899999999999999999999998 444 443
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.32 E-value=2.1e-07 Score=70.89 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHH
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTK 120 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~ 120 (190)
++..++|++++++|||||||||+++.
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHH
Confidence 45567899999999999999999993
No 79
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.29 E-value=7.6e-07 Score=69.66 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
+++++++|+|||||||||+++.|++.+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 56899999999999999999999997654
No 80
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.28 E-value=1.3e-06 Score=67.84 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++|.+++|+|||||||||+++.|++.+ +.+ +++.|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~-~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET----GLE-FAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH----CCE-EEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh----CCe-EEccccc
Confidence 3568899999999999999999999988 334 4555654
No 81
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.28 E-value=2e-07 Score=73.94 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=21.6
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHH-HHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLA-YHY 125 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la-~~~ 125 (190)
++++..++|.+++|+|||||||||+++.|+ +.+
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456777889999999999999999999999 887
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.27 E-value=1e-06 Score=72.69 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCCCCcccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 74 MIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 74 ~i~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.+...+.+.+...++.. .....|.++.|+||+||||||+++.|+..+. .....+++|.+|.
T Consensus 11 ~~~~~~~~~~~~~l~~~-----~~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred HHHHHHHHHHHHHhccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHH
Confidence 34445555555566542 2335678999999999999999999988763 2356778898763
No 83
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.26 E-value=1.1e-06 Score=74.56 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=38.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
..+.+++|+|+|||||||++..|++.+.+.++++.+++.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 45789999999999999999999999999899999999997654
No 84
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.26 E-value=1.4e-07 Score=85.33 Aligned_cols=47 Identities=23% Similarity=0.170 Sum_probs=40.3
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++..++|++++++|||||||||+++.|++.+.+..+++.+.+.|...
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence 34557899999999999999999999999999888888887777543
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.26 E-value=1.3e-06 Score=65.27 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+++.++|+||||+||||+++.+++.+.+.|.++..+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 577999999999999999999999998776666665544
No 86
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.26 E-value=4.1e-07 Score=69.55 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.7
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.++|.+++|+|||||||||+++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999999999987
No 87
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.25 E-value=8.2e-07 Score=67.49 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+|.+++|+|++||||||+++.|+..+.+.|..+..++.|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 35789999999999999999999999977776666666553
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.25 E-value=7.9e-07 Score=73.01 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEeccC
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCADT 139 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~D~ 139 (190)
+..++|.+++|+||||+||||++..+++.+.+. |.+|.+++.+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 345678999999999999999999999999876 55898887764
No 89
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.25 E-value=1.1e-06 Score=75.24 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=34.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEec
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCA 137 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~ 137 (190)
..++.+++++|||||||||+++.|++.+.+. .++|.+++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 4578899999999999999999999999887 677876654
No 90
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.24 E-value=1.3e-06 Score=67.00 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=35.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..+++|+|++||||||++.+|+..+...|.+|.++..|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4589999999999999999999999988999999887653
No 91
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.24 E-value=1.2e-07 Score=85.49 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=39.9
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|...
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc
Confidence 44556889999999999999999999999999888888887766543
No 92
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.7e-07 Score=81.19 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=36.7
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCC-cEEEEecc
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW-KACLVCAD 138 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~-~v~li~~D 138 (190)
+++...+|++++|+|||||||||+++.|++++.+.++ ++.+++.|
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 4455567899999999999999999999999988877 73344444
No 93
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.21 E-value=4e-07 Score=80.59 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=41.1
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++..++ .+++|+|||||||||++++|++.+.+..+++.+.+.+..
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 455667777 999999999999999999999999988888888776654
No 94
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.21 E-value=1.2e-07 Score=85.70 Aligned_cols=47 Identities=26% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|...
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~ 410 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhh
Confidence 44556789999999999999999999999999888888887766543
No 95
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.21 E-value=5.9e-07 Score=75.13 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=32.8
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
++++..++|++++|+|||||||||+++.|++.+ .++|.
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~ 155 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL 155 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence 456777889999999999999999999999998 45564
No 96
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.19 E-value=3.5e-06 Score=66.45 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=36.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++.+++++||||+||||++..++....+.+.++.+++.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 468899999999999999999998888777888999988753
No 97
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.19 E-value=7.3e-07 Score=69.45 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
++++++|+|||||||||+++.|++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999999874
No 98
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=1.9e-06 Score=65.05 Aligned_cols=38 Identities=21% Similarity=0.464 Sum_probs=30.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++.+++|+|||||||||+++.|+..+ | ..+++.|.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 457899999999999999999999887 2 3355666553
No 99
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.19 E-value=1.5e-06 Score=75.65 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=35.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.++.+++|+|||||||||+++.+++.+.+..++|.++.-+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 45789999999999999999999999987778888876543
No 100
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.18 E-value=2.8e-06 Score=68.50 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=34.9
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
...|.+++++|+|||||||+++.|+..+. ..+.+++.|.+|.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHH
Confidence 45678999999999999999999998874 3456788998864
No 101
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.18 E-value=6.1e-06 Score=64.26 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=35.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
..+++++|++||||||++..|+..+... .++.++..|....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK 70 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc
Confidence 4689999999999999999999987554 6789998888653
No 102
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.18 E-value=1.5e-07 Score=84.96 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=40.8
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|....
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 344568899999999999999999999999998888898877776443
No 103
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.18 E-value=8.9e-08 Score=86.31 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=39.4
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+..++|++++++|||||||||+++.|++.+.+..++|.+.+.|...
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 4456889999999999999999999999999888888887766543
No 104
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.17 E-value=6e-07 Score=71.47 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=29.7
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHh--cCCcEEEEe
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLK--KNWKACLVC 136 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~--~~~~v~li~ 136 (190)
.++|.+++|+|||||||||+++.|++.+.+ ..+.+.+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~tt 53 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT 53 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEEC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecC
Confidence 467899999999999999999999998863 333444443
No 105
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.17 E-value=1.4e-06 Score=68.21 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=36.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH-hcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~li~~D~~r 141 (190)
.+|.+++|+|++||||||+++.|+..+. ..|..+.+++.|.+|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4578999999999999999999999997 567677778777644
No 106
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.16 E-value=9.5e-07 Score=72.43 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=23.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
..++++|||||||||+++.|++...+..+++.+.+.+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~ 39 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK 39 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc
Confidence 3689999999999999999999998776666554443
No 107
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.16 E-value=1.4e-06 Score=72.20 Aligned_cols=44 Identities=34% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcC--Cc-EEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN--WK-ACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~--~~-v~li~~D~~r~ 142 (190)
+++.+|+|+|++||||||+++.|+..+...+ .+ +.++..|.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 4688999999999999999999999998653 33 44549998754
No 108
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.15 E-value=1.4e-06 Score=70.69 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=35.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++.+|+|+|++||||||+++.|+..+...|..+.+++.|.+|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 467999999999999999999999987777777667788654
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=1.4e-06 Score=67.54 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=29.6
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++++...++.+|+|+||+||||||+++.|+..+. . .+++.|.+
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~---~--~~i~~d~~ 59 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN---V--PFIDLDWY 59 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHT---C--CEEEHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC---C--CEEcchHH
Confidence 45667777788999999999999999999999883 2 24566643
No 110
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.13 E-value=8.4e-07 Score=75.37 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
++..+|++++|+|||||||||+++.|++...+..+.+.+++
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 56678999999999999999999999999876544454444
No 111
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.12 E-value=6e-07 Score=80.43 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=30.9
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcE
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v 132 (190)
.++|++++|+|||||||||+++.|++.+.+..+++
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 35789999999999999999999999998776654
No 112
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.11 E-value=3.6e-07 Score=77.84 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
++..+++.+++++|||||||||+++.|++.+.+..+.+.+-+.+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~ 212 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP 212 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc
Confidence 34456788999999999999999999999998877777665443
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.09 E-value=2.3e-06 Score=65.44 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=24.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+.+++|+|||||||||+++.|+. +.++.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i 32 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYI 32 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEE
Confidence 56899999999999999999986 33444543
No 114
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.09 E-value=1.8e-06 Score=66.46 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=22.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.++|+|||||||||+++.|++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999985
No 115
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.09 E-value=1.7e-06 Score=66.32 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=30.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++++|+|++||||||+++.|++.+.+.+.++..+..|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 58999999999999999999999998866655555443
No 116
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.08 E-value=1.4e-06 Score=67.24 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
.+|.+++|+|||||||||+++.|+..+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46789999999999999999999998743
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.08 E-value=2.1e-06 Score=65.62 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
++++++|+|||||||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999999764
No 118
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.08 E-value=3e-06 Score=64.30 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+.+|+|.|++||||||+++.|+..+...|.+..+++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 46899999999999999999999987666444555543
No 119
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.08 E-value=1.4e-06 Score=68.16 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
++|.+++|+|||||||||+++.|+..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999998875
No 120
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.08 E-value=2.6e-06 Score=70.43 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=34.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++.+|++.||+||||||+++.|+..+...+.++.++++|.|.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456999999999999999999999887777778999999875
No 121
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.08 E-value=4.1e-06 Score=71.34 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~D~ 139 (190)
.++.+++++|||||||||+++.+++.+.+. ++.+..+ .|.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-ed~ 161 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-EDP 161 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-ESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-cCc
Confidence 456699999999999999999999999876 5555444 443
No 122
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.07 E-value=1.9e-05 Score=66.85 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=60.3
Q ss_pred HHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcc----cCCCCCCCeEEEEEccCCCCh
Q psy4311 39 LLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKA----HQPQKGKPNVIMFVGLQGSGK 114 (190)
Q Consensus 39 L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~----~~~~~~~~~vi~l~G~~G~GK 114 (190)
....+++..-+.++.+...+.+....+. ...+..+. ..-...+...... +....+++.++.|+|||||||
T Consensus 71 ~~~~~~s~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~---~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGK 144 (349)
T 1pzn_A 71 KEVAGISEGTALKIIQAARKAANLGTFM---RADEYLKK---RATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 144 (349)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHCSTTSCE---EHHHHHHH---HHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSH
T ss_pred HhhcCCCHHHHHHHHHHHhhhccccCCc---cHHHHHhh---hccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCH
Confidence 3346677777777777766554321111 11111111 0001122222221 123456789999999999999
Q ss_pred hHHHHHHHHHHH--h-c---CCcEEEEec-cCCChhHHHHHHHHhhhcCC
Q psy4311 115 TTTCTKLAYHYL--K-K---NWKACLVCA-DTFRAGAYDQLKQNATKARI 157 (190)
Q Consensus 115 TT~~~~la~~~~--~-~---~~~v~li~~-D~~r~~a~eql~~~~~~~~i 157 (190)
||++..++.... + . ++++.+++. +.++. +++..+++..++
T Consensus 145 TTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~---~~i~~i~q~~~~ 191 (349)
T 1pzn_A 145 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP---ERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH---HHHHHHHHTTTC
T ss_pred HHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH---HHHHHHHHHcCC
Confidence 999999999873 2 2 367555544 44432 344455555443
No 123
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.06 E-value=1.3e-06 Score=78.33 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=32.8
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCc
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~ 131 (190)
+++ ...+|++++|+|||||||||+++.|++.+.+..++
T Consensus 40 ~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 40 RLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 444 56789999999999999999999999998876555
No 124
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.06 E-value=5.5e-06 Score=63.69 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..+++|+|++||||||++..|...+...+.++..+..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 468999999999999999999999988888888887654
No 125
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.05 E-value=4.3e-06 Score=63.45 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=31.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.+|+|.|++||||||+++.|+..+...|.++.++..|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4799999999999999999999998777777777643
No 126
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.05 E-value=3.9e-06 Score=74.65 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=36.4
Q ss_pred ccCC-CCCCCeEEEEEccCCCChhHHHHH--HHHHHHhcCCcEEEEecc
Q psy4311 93 AHQP-QKGKPNVIMFVGLQGSGKTTTCTK--LAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 93 ~~~~-~~~~~~vi~l~G~~G~GKTT~~~~--la~~~~~~~~~v~li~~D 138 (190)
++++ ..++|++++|+|||||||||+++. +++.+.+..+.+.+.+.+
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 3456 567899999999999999999999 678777666667666555
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.05 E-value=4.3e-06 Score=64.88 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=33.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.+++++||||+||||++..++. ..+.++.+++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 5688999999999999999999999 4577888888765
No 128
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.05 E-value=3.1e-06 Score=65.76 Aligned_cols=41 Identities=32% Similarity=0.500 Sum_probs=32.7
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
...+++.+++++|++||||||+++.|+..+. .+.++..|.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 4456788999999999999999999988652 3666777754
No 129
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.04 E-value=2.5e-06 Score=67.93 Aligned_cols=43 Identities=37% Similarity=0.607 Sum_probs=34.8
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
...++++|.|+|||||||||.+..|+..+ +. +.+-..|.+|..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~---g~-~hIstGdllR~~ 67 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF---HF-NHLSSGDLLRAE 67 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH---CC-EEECHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH---CC-ceEcHHHHHHHH
Confidence 34678899999999999999999999988 33 556667888753
No 130
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.02 E-value=1.7e-06 Score=72.96 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+..+++.+++++|||||||||+++.|++.+.+..+.+.+-+.+.
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e 209 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE 209 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec
Confidence 33456789999999999999999999999988878787765543
No 131
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.4e-06 Score=79.11 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcE
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v 132 (190)
..+|++++|+|||||||||+++.|++.+.+..+++
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 46789999999999999999999999998877765
No 132
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=98.01 E-value=7.4e-06 Score=68.59 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=38.7
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..+..+||++.|-=|+|||||+..||..|...|++|.++++|..
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34567899999999999999999999999999999999999963
No 133
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.01 E-value=1.8e-06 Score=75.52 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
++..+|++++|+|||||||||+++.|++...+..+.+.+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 677889999999999999999999999998766555555543
No 134
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.01 E-value=3e-06 Score=67.31 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=32.7
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++|.+++|.|++||||||+++.|+++ +++|.+...+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4467899999999999999999999887 56787776653
No 135
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.01 E-value=9.6e-07 Score=79.12 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=32.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
..+|++++|+|||||||||+++.|++.+.+..++|.+
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 327 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP 327 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3578999999999999999999999999887776643
No 136
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.00 E-value=8.7e-06 Score=65.08 Aligned_cols=41 Identities=34% Similarity=0.406 Sum_probs=37.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.+..+++++|..||||||++..|+..+. .|.+|.+++.|..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 4567999999999999999999999999 8999999999964
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.00 E-value=4e-06 Score=64.81 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.+.+|+|+|++||||||+++.|+..+. ..+++.|.++
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg-----~~~i~~d~~~ 53 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACG-----YPFIEGDALH 53 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHT-----CCEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CEEEeCCcCc
Confidence 466999999999999999999999882 3456777764
No 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.00 E-value=3.7e-06 Score=67.21 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+|.+++|+|||||||||+++.|+..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999766
No 139
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.99 E-value=2.9e-06 Score=63.70 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=27.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+.+++|+||+||||||+++.|+..+. ..+++.|.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~-----~~~id~d~ 37 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-----MEFYDSDQ 37 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT-----CEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEeccH
Confidence 56899999999999999999999874 23556664
No 140
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.98 E-value=2.2e-06 Score=76.99 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=37.4
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCC-cEEEEeccCCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW-KACLVCADTFR 141 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~-~v~li~~D~~r 141 (190)
..+|.+++|+|+|||||||+++.|++.+.+.++ ++.+++.|.++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 356899999999999999999999999987764 78778887653
No 141
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.98 E-value=1.1e-06 Score=78.63 Aligned_cols=41 Identities=32% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCc------EEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK------ACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~------v~li~~D~ 139 (190)
.+|++++|+|||||||||+++.|++.+.+..++ +.++..|.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~ 356 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYI 356 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCC
Confidence 578999999999999999999999998876444 44555543
No 142
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.97 E-value=4.1e-06 Score=62.97 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=28.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
|.+|+|.|++||||||+++.|+.. .....+++.|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHH
Confidence 568999999999999999999873 1234556666554
No 143
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.97 E-value=6.9e-06 Score=66.00 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=34.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc-----CCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-----NWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-----~~~v~li~~D~~r 141 (190)
.++.+|+|.|++||||||+++.|+..+... +.++.+++.|.|.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 456799999999999999999999987532 4568888888764
No 144
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.96 E-value=3.6e-06 Score=63.47 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.+|.++|++||||||+++.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998773
No 145
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.96 E-value=1.3e-06 Score=79.35 Aligned_cols=34 Identities=38% Similarity=0.252 Sum_probs=29.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcE
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v 132 (190)
.+|++++|+|||||||||+++.|++.+.+..++|
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 5789999999999999999999999988765444
No 146
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.95 E-value=2.3e-06 Score=77.70 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=32.7
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCc
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~ 131 (190)
+++ ..++|++++|+|||||||||+++.|++.+.+..++
T Consensus 110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 110 RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 344 56789999999999999999999999999877665
No 147
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.95 E-value=2.4e-05 Score=60.43 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
.+|.+|+|.|++||||||+++.|+..+...+.++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 4577999999999999999999999998777776444
No 148
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.94 E-value=2.5e-05 Score=60.36 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
.+|.+|+|.|++||||||+++.|+..+...+.++.++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 44 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 3577999999999999999999999987666666433
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.94 E-value=1.5e-05 Score=62.71 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=31.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH--Hh----cCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY--LK----KNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~--~~----~~~~v~li~~D~ 139 (190)
+++.+++|+||||+||||++..++... .+ .+..+.+++.+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 468899999999999999999999963 22 245566665543
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.91 E-value=8.5e-06 Score=62.33 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=25.1
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
++...++.+|+|+|++||||||+++.|+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345556789999999999999999999987
No 151
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.90 E-value=2.9e-05 Score=61.84 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=32.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
..++.+|+|.||+||||||.++.|+..+.. ++.+...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 357889999999999999999999999987 7777544
No 152
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.90 E-value=2.1e-05 Score=63.99 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=33.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc----------CCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK----------NWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~----------~~~v~li~~D~ 139 (190)
+++.+++|+||||+||||++..++..+... +.++.+++...
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 578899999999999999999999977642 35677776654
No 153
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.90 E-value=7.9e-07 Score=84.54 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=35.4
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+++...+|++++|+|||||||||+++.|++.+.+..++|.+
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~ 732 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 44555688999999999999999999999999887777765
No 154
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.89 E-value=3.3e-06 Score=71.64 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.1
Q ss_pred cCCCCCC--CeEEEEEccCCCChhHHHHHHHHHHHhcC
Q psy4311 94 HQPQKGK--PNVIMFVGLQGSGKTTTCTKLAYHYLKKN 129 (190)
Q Consensus 94 ~~~~~~~--~~vi~l~G~~G~GKTT~~~~la~~~~~~~ 129 (190)
+++...+ +..++|+|||||||||+++.|++.+.+..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4455666 88999999999999999999999998765
No 155
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.88 E-value=7.4e-06 Score=64.56 Aligned_cols=37 Identities=27% Similarity=0.551 Sum_probs=31.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+|.|+|||||||+|.++.|+..+ +. +.+-..|.+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g~-~~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---GF-VHISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CC-EEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CC-eEEcHHHHHHHH
Confidence 68899999999999999999988 33 567778888864
No 156
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.87 E-value=2.9e-06 Score=73.70 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=30.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
.+.+++|+|||||||||+++.|++.+.+..+++.+.+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g 104 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV 104 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC
Confidence 3569999999999999999999998877666554433
No 157
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.87 E-value=5.2e-06 Score=73.92 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=31.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.+.+++++|||||||||+++.|++.+.+..+.+.+-+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 567899999999999999999999987766655554443
No 158
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.87 E-value=1.9e-06 Score=84.16 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=42.6
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
++++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|.-..
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC
Confidence 45566788999999999999999999999999998888888877776443
No 159
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.87 E-value=2.6e-05 Score=63.68 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=39.4
Q ss_pred CCCeEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 99 GKPNVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 99 ~~~~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
.++++++|.++ +|+||||++..||..+...|.+|.++++|..+..
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPT 125 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Confidence 34678999987 6899999999999999999999999999987654
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.86 E-value=1.3e-05 Score=65.66 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=28.8
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+..++| ++|+||||+||||+++.+++.+.. ..+.+-+.+.
T Consensus 41 l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 41 LVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp CCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred CCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 444444 999999999999999999998753 2344444444
No 161
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.86 E-value=2e-05 Score=64.91 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=38.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++++|+|.|-.|+||||++..||..+...|.+|.++++|...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4578999999999999999999999999999999999999743
No 162
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.86 E-value=4.9e-06 Score=64.47 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=29.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
+|+|.|++||||||+++.|+..+...+.++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7899999999999999999999987776666543
No 163
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.85 E-value=1.8e-06 Score=84.61 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=42.8
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++..++|+.+++||++||||||++..|.+.+.+..++|.+.+.|.-...
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~ 1147 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN 1147 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC
Confidence 34556789999999999999999999999999999999998888875443
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.85 E-value=1.6e-05 Score=67.76 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=36.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.++.|.||||+||||++..++..+.+.+++|.+++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46889999999999999999999999988888898887763
No 165
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.85 E-value=8.2e-06 Score=60.80 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=29.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.+|+|+|++||||||+++.|+..+. ..+++.|.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~~~ 37 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-----YPIIKGSSFEL 37 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-----CCEEECCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-----CeeecCccccc
Confidence 3799999999999999999998873 33577887643
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.85 E-value=2.1e-05 Score=61.31 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=33.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+..+.|.||+|+||||++..++..+...+.++..+.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3568999999999999999999999887677777766654
No 167
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.84 E-value=9e-06 Score=63.79 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
..++++++|+||+||||||+++.|+..+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34678999999999999999999998764
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.84 E-value=0.00011 Score=62.00 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..+..++++|+|||||||++..|++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999864
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.83 E-value=2.2e-05 Score=60.42 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=28.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
+.+|+|.|++||||||+++.|+..+...+ .+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 57899999999999999999999987655 5533
No 170
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.83 E-value=1.2e-05 Score=62.89 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=23.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+.+++|+||+||||||+++.|+..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999877
No 171
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.83 E-value=2.3e-05 Score=62.95 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=36.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|+|.|..|+||||++..||..+...|++|.++++|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 4677889999999999999999999999999999999754
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.82 E-value=9.7e-06 Score=61.44 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
.++ +.+|+|||||||||++.+|...+..
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344 9999999999999999999998753
No 173
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.81 E-value=1.9e-06 Score=84.17 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=39.0
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
++..++|++++++|||||||||+++.|++.+.+..++|.+.+.|..
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGG
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHH
Confidence 3455688999999999999999999999999988888877766653
No 174
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.81 E-value=2.6e-05 Score=59.81 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=27.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
+|.+|+|.|++||||||.++.|+..+ .|..+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 46799999999999999999999887 234454443
No 175
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.81 E-value=6.7e-06 Score=68.27 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
.+.+++|+|||||||||+++.|+ .+.+..+.+.+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 46799999999999999999999 77777777776
No 176
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=4.5e-06 Score=69.22 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE---EeccCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL---VCADTF 140 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l---i~~D~~ 140 (190)
.+.+++++|||||||||+++.|++...+..+++.+ -+.++.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence 46799999999999999999999998887777776 444443
No 177
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.80 E-value=1.1e-05 Score=65.11 Aligned_cols=27 Identities=37% Similarity=0.477 Sum_probs=24.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.++.+|+|+||+||||||+++.|+..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999999655
No 178
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.80 E-value=3.4e-05 Score=63.87 Aligned_cols=45 Identities=29% Similarity=0.315 Sum_probs=39.3
Q ss_pred CCCeEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 99 GKPNVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 99 ~~~~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
.++++|+|.|+ +|+||||++..||..+...|.+|.++++|..+..
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~ 147 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY 147 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCC
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCcc
Confidence 34679999997 5899999999999999999999999999986544
No 179
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=2.2e-05 Score=60.44 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=33.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+..+.|.||+|+||||++..++..+...+.++.++.+.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 36799999999999999999999998878888777665
No 180
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.80 E-value=2.2e-05 Score=64.16 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+...++|.||+|+||||+++.++..+...+..+..+++..+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 345899999999999999999999997766667777776554
No 181
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.79 E-value=1.6e-05 Score=60.42 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=30.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.++.+|.|+|++||||||+++.|+..+ +. .+++.|.+|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l---~~--~~i~~D~~~ 40 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL---RL--PLLSKDAFK 40 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH---TC--CEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc---CC--eEecHHHHH
Confidence 357899999999999999999999887 22 246667654
No 182
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.79 E-value=1.3e-05 Score=60.77 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+|.+|+|+|++||||||+++.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999877
No 183
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.79 E-value=2.7e-05 Score=59.36 Aligned_cols=33 Identities=39% Similarity=0.459 Sum_probs=28.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
+|+|.|++||||||+++.|+..+...|..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999999999998778777543
No 184
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.78 E-value=6.3e-06 Score=75.38 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.0
Q ss_pred CcccCCCCCCCeEEEEEccCCCChhHHH
Q psy4311 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTC 118 (190)
Q Consensus 91 ~~~~~~~~~~~~vi~l~G~~G~GKTT~~ 118 (190)
.+++++..++|++++|+|||||||||++
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4567788889999999999999999997
No 185
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.75 E-value=6e-05 Score=62.11 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=39.0
Q ss_pred CCCeEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 99 GKPNVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 99 ~~~~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
.++++|+|.++ .|+||||++..||..+...|.+|.++++|..+..
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~ 135 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGY 135 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCC
Confidence 34678888887 5899999999999999999999999999987654
No 186
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.75 E-value=7.6e-06 Score=71.35 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=27.1
Q ss_pred ccCCCCCCCeE--EEEEccCCCChhHHHHHHHHH
Q psy4311 93 AHQPQKGKPNV--IMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 93 ~~~~~~~~~~v--i~l~G~~G~GKTT~~~~la~~ 124 (190)
++++...+|.+ ++|+|||||||||+++.|++.
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44566778889 999999999999999999986
No 187
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.74 E-value=1.2e-05 Score=62.47 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.++.+++|+||+||||||+++.|+..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4678999999999999999999998773
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=2.8e-05 Score=65.89 Aligned_cols=41 Identities=24% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.++.+.||||+||||++..++......++++.+++.+.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 46789999999999999999999998888888999998874
No 189
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.74 E-value=1.7e-06 Score=69.34 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+++|+|||||||||++.+|++.+.+..+.|.+.+.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 68899999999999999999999988878887766654
No 190
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.73 E-value=4e-05 Score=62.48 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=36.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++|+|.|..|+||||++..||..+...|++|.++++|...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5778889999999999999999999999999999999754
No 191
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=2.1e-05 Score=59.59 Aligned_cols=25 Identities=36% Similarity=0.785 Sum_probs=23.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
|.+|+|.|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999877
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.73 E-value=3.8e-05 Score=58.20 Aligned_cols=31 Identities=39% Similarity=0.525 Sum_probs=27.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEE
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~ 133 (190)
+|+|.|++||||||.++.|+..+...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999999976666553
No 193
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.72 E-value=1.7e-05 Score=61.21 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=25.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+|+++|+|||||||+++.|+. + | +.+++.|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 799999999999999999998 5 2 44566664
No 194
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.72 E-value=7e-05 Score=63.30 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=37.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
...++.+.|..|+||||+++.+|..+...|.+|.++++|..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45677888999999999999999999999999999999983
No 195
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.72 E-value=5.9e-06 Score=75.03 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNW 130 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~ 130 (190)
+++++|+|||||||||+++.|++.+++..+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 378999999999999999999999987644
No 196
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.72 E-value=4e-05 Score=61.67 Aligned_cols=45 Identities=33% Similarity=0.425 Sum_probs=36.7
Q ss_pred CCCCCeEEEEEccC-CCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 97 QKGKPNVIMFVGLQ-GSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 97 ~~~~~~vi~l~G~~-G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
...++++|+|.++. |+||||++..||..+. .|.+|.++++|....
T Consensus 23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~ 68 (267)
T 3k9g_A 23 DNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQAS 68 (267)
T ss_dssp ---CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCH
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Confidence 34567888886655 7899999999999999 899999999998653
No 197
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.72 E-value=7.1e-05 Score=66.51 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
..+|.+++++||||+||||++..+++...+.|.++..+...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35788999999999999999999999998877666555443
No 198
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.71 E-value=2.4e-05 Score=59.61 Aligned_cols=26 Identities=50% Similarity=0.839 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
++.+|+|+|++||||||+++.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999887
No 199
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.71 E-value=1.8e-05 Score=66.01 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
-++++|+|+|||||||+++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4699999999999999999999875
No 200
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.70 E-value=9.4e-05 Score=58.40 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
+|.+|.|.|++||||||.+..|+.++...|.+|....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4789999999999999999999999998888886553
No 201
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.70 E-value=2.4e-05 Score=69.73 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=37.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
..+.+|+++|++||||||++++|+..+.-.+.++.+++.|.+|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 45679999999999999999999999977677777788776543
No 202
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.70 E-value=8.7e-05 Score=61.97 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=36.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..++.+.|..|+||||++..+|..+...|.+|.++++|.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 467888899999999999999999999999999999997
No 203
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.68 E-value=2.8e-05 Score=62.73 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=27.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.+++++|||||||||++..|+..+. ..+++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-----~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-----WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-----CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-----CeEEeccHH
Confidence 4789999999999999999998873 234666653
No 204
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.68 E-value=3.7e-05 Score=58.18 Aligned_cols=34 Identities=35% Similarity=0.595 Sum_probs=27.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.+.+|+|.|++||||||+++.|+..+. ..+++.|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG-----WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC-----CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC-----CeEeeHH
Confidence 467999999999999999999998873 3345554
No 205
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.68 E-value=6.4e-05 Score=63.91 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCCCCCeEEEEEc-cCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 96 PQKGKPNVIMFVG-LQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 96 ~~~~~~~vi~l~G-~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
....++++|++.+ -.|+||||++..||..+...|.+|.++++|
T Consensus 138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4456678999986 668999999999999999999999999999
No 206
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.68 E-value=7.1e-05 Score=59.54 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=35.6
Q ss_pred CeEEEEEccC-CCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQ-GSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~-G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++|++.+.. |+||||++..||..+...|.+|.++++|...
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL 43 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 4678887665 7899999999999999999999999999843
No 207
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.68 E-value=9e-05 Score=59.55 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCc-EEEE
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK-ACLV 135 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~-v~li 135 (190)
+|.+|.|.|++||||||.+..|+.++...+.+ +.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 47899999999999999999999999988887 4443
No 208
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.68 E-value=5.7e-05 Score=59.58 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=36.4
Q ss_pred CCeEEEEEccC-CCChhHHHHHHHHHHHhc-CCcEEEEeccCC
Q psy4311 100 KPNVIMFVGLQ-GSGKTTTCTKLAYHYLKK-NWKACLVCADTF 140 (190)
Q Consensus 100 ~~~vi~l~G~~-G~GKTT~~~~la~~~~~~-~~~v~li~~D~~ 140 (190)
++++|++.++. |+||||++..||..+... |.+|.++++|..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 46788888765 799999999999999988 999999999976
No 209
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.67 E-value=6.5e-05 Score=62.69 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=42.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc------CCcEEEEeccC-CChhHHHHHHHHhhhcCCc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK------NWKACLVCADT-FRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~------~~~v~li~~D~-~r~~a~eql~~~~~~~~i~ 158 (190)
+++.++.+.||+|+||||++..++...... ++++.+++.+. |+. +++..+++.++++
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~---~~l~~~~~~~g~~ 168 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRW---ERIENMAKALGLD 168 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH---HHHHHHHHHTTCC
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 467899999999999999999999875433 67788888765 543 4555556666653
No 210
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.67 E-value=2.8e-05 Score=58.94 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=28.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+.+|+++||+||||||+++.|+..+. ..+++.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~-----~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK-----RILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC-----CCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEChHH
Confidence 56899999999999999999998873 335667754
No 211
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.67 E-value=8.4e-05 Score=59.54 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=37.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
-.+.+.|++|+||||++..+|..+...|.+|.++..|....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 46889999999999999999999999999999999998643
No 212
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.67 E-value=4.9e-06 Score=81.52 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+..++|+.++++||+||||||+++.|.+.+.+..++|.+-+.|.
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i 482 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDV 482 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccc
Confidence 44467899999999999999999999999998888887766554
No 213
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.66 E-value=8.9e-05 Score=59.68 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=36.8
Q ss_pred CeEEEEEccC-CCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 101 PNVIMFVGLQ-GSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 101 ~~vi~l~G~~-G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
+++|++++.. |+||||++..||..+...|.+|.++++|.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~ 61 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPS 61 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 4577776554 799999999999999999999999999987654
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.65 E-value=2.6e-05 Score=60.31 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~ 123 (190)
.+++|+||+||||||+++.|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 215
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.63 E-value=0.00012 Score=57.86 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCC-cEEEE
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNW-KACLV 135 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~-~v~li 135 (190)
|.+|.|-|++||||||.++.|+.++...|. .|.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 679999999999999999999999998887 56444
No 216
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.63 E-value=3.8e-05 Score=58.04 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.++.+|+|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 346689999999999999999999887
No 217
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.63 E-value=1.4e-05 Score=68.20 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=27.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH-hcCCcEEE
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACL 134 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~l 134 (190)
++.+++|+|||||||||+++.|++... +..+.|.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 467999999999999999999998876 65555544
No 218
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.62 E-value=4.4e-05 Score=58.81 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=25.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
...|.+|+|+|++||||||+++.|+..+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999999987
No 219
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.62 E-value=7.4e-05 Score=67.15 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=38.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+.++++.+.|..|+||||+++.+|..+...|.+|.++++|.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45678999999999999999999999999999999999996
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.62 E-value=3e-05 Score=59.35 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++.+|+|+|++||||||+++.|+.. | +.+++.|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccHH
Confidence 45689999999999999999999875 3 335666653
No 221
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.61 E-value=6.8e-06 Score=68.69 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=23.8
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEE
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~l 134 (190)
..++.+++|+|||||||||+++.|++...+..+.+.+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 3467899999999999999999999887665554543
No 222
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.61 E-value=0.00011 Score=58.51 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEec
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCA 137 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~ 137 (190)
..+|.+|.|.|+.||||||.++.|+.++.. .|.+|.+...
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr 58 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR 58 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee
Confidence 356889999999999999999999999988 8888876333
No 223
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.61 E-value=3.9e-05 Score=59.06 Aligned_cols=29 Identities=38% Similarity=0.654 Sum_probs=25.2
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 97 ~~~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
...++.+|+|.|++||||||+++.|+..+
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999999876
No 224
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.61 E-value=6.4e-05 Score=61.38 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=36.7
Q ss_pred CeEEEEEc---cCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 101 PNVIMFVG---LQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 101 ~~vi~l~G---~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
+++++|.+ ..|+||||++..||..+...|.+|.++++|....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 45677776 7899999999999999999999999999998754
No 225
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.61 E-value=3.4e-05 Score=58.15 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=27.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++|+|++||||||+++.|+..+. ..+++.|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHH
Confidence 689999999999999999999873 345666653
No 226
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.61 E-value=0.00012 Score=61.58 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=42.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHh------cCCcEEEEeccC-CChhHHHHHHHHhhhcCCc
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLK------KNWKACLVCADT-FRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~------~~~~v~li~~D~-~r~~a~eql~~~~~~~~i~ 158 (190)
.+++.++.|.||+|+||||++..++..... .++++.+++.+. |+. +++..++..++++
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~---~~l~~~~~~~g~~ 183 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP---DRLRDIADRFNVD 183 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH---HHHHHHHHHTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHcCCC
Confidence 357889999999999999999999987432 467788887764 443 4555556565553
No 227
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.60 E-value=3.8e-05 Score=58.59 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=28.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
++.+|+|.|++||||||+++.|+..+. ..+++.|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~ 45 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGE 45 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHH
Confidence 356899999999999999999999883 34565554
No 228
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.60 E-value=5.7e-05 Score=63.95 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=30.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+.+|+|+||+||||||++..|+..+. +.++++|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 36899999999999999999999874 668889876
No 229
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.60 E-value=4.2e-05 Score=60.24 Aligned_cols=37 Identities=27% Similarity=0.177 Sum_probs=34.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
|+|.|..|+||||++..||..+...|.+|.++++|..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6668999999999999999999999999999999984
No 230
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.60 E-value=0.00011 Score=57.68 Aligned_cols=41 Identities=27% Similarity=0.239 Sum_probs=35.2
Q ss_pred CeEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++|++.+. .|+||||++..||..+...|++|.+++.|...
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 357777665 58999999999999999899999999999853
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.59 E-value=7.7e-05 Score=57.16 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=51.3
Q ss_pred eEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCceeecCCC-----CCCcccccCc
Q psy4311 102 NVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKG-----KRNPIHNMGL 175 (190)
Q Consensus 102 ~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~~~~~~-----~~~~l~~~~l 175 (190)
++|++.++ .|+||||++..||..+...|.+|.++++|...... ..+. ....++++...... ....-+.+|+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ 78 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT-NWSK--AGKAAFDVFTAASEKDVYGIRKDLADYDF 78 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHHT--TSCCSSEEEECCSHHHHHTHHHHTTTSSE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH-HHHh--cCCCCCcEEecCcHHHHHHHHHhcCCCCE
Confidence 46777754 57999999999999999999999999999654321 1111 11223444432210 0011234788
Q ss_pred eeeCCCCcc
Q psy4311 176 SLIPTYEKS 184 (190)
Q Consensus 176 vlid~~~r~ 184 (190)
+++|+.+..
T Consensus 79 viiD~~~~~ 87 (206)
T 4dzz_A 79 AIVDGAGSL 87 (206)
T ss_dssp EEEECCSSS
T ss_pred EEEECCCCC
Confidence 999998754
No 232
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.59 E-value=8.5e-05 Score=57.18 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=31.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
+.++.+.||+|+||||++..++..+...+.++.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999999999999988877788887763
No 233
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.59 E-value=4.4e-05 Score=59.73 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=24.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
++..|+|+|++||||||.++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999987
No 234
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.59 E-value=9.6e-05 Score=63.83 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=38.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH--h----cCCcEEEEecc-CCChhHHHHHHHHhhhcCCc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL--K----KNWKACLVCAD-TFRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~--~----~~~~v~li~~D-~~r~~a~eql~~~~~~~~i~ 158 (190)
+++.++.|+||||+||||++..++.... + .++++.+++.. .++. +.++.+++++++.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~---~rl~~~a~~~gl~ 239 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP---VRLVSIAQRFGLD 239 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---HHHHHHHHHTTCC
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH---HHHHHHHHHcCCC
Confidence 5688999999999999999998765432 2 24556666654 4554 2344455566653
No 235
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.58 E-value=5.9e-05 Score=62.43 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=34.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+..+.|.||+|+||||++..++..+...+.++..+.++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4579999999999999999999999777777888877654
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.58 E-value=3.3e-05 Score=61.73 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+..+++ ++|+||||+||||+++.+++.+.
T Consensus 46 ~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 46 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 333444 99999999999999999998764
No 237
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.58 E-value=0.00015 Score=56.44 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=33.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
...++++|.+||||||++..++...... .++..++.|...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~ 77 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA 77 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC
Confidence 4689999999999999999999887554 678888888653
No 238
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.57 E-value=3.7e-05 Score=62.46 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+..+++ ++|+||||+||||+++.++..+.
T Consensus 70 ~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 70 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 444444 99999999999999999998874
No 239
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.57 E-value=2.8e-05 Score=58.65 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=19.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
++.+|+|.|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467999999999999999999988763
No 240
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.57 E-value=0.00012 Score=58.43 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=34.7
Q ss_pred CeEEEEE-ccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFV-GLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~-G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+++|+++ +..|+||||++..||..+...|.+|.++++|...
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM 43 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 3566675 4558999999999999999889999999999853
No 241
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.57 E-value=3e-05 Score=66.56 Aligned_cols=31 Identities=29% Similarity=0.186 Sum_probs=27.3
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
++..+++.+++++||||+||||+++.|++.+
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456778899999999999999999999875
No 242
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.57 E-value=1.5e-05 Score=64.63 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=24.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.+++|+|++||||||+++.|+..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 77999999999999999999999873
No 243
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.56 E-value=4.1e-05 Score=64.07 Aligned_cols=26 Identities=27% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+..++|+||||+||||+++.+++.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999999987
No 244
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.56 E-value=2e-05 Score=74.93 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=25.7
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHH
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
++...+|++++|+|||||||||+++.|++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44556899999999999999999999984
No 245
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.56 E-value=6e-05 Score=68.64 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=36.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++.+|.|.|++||||||+++.|+..+...|..+..++.|..|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 678999999999999999999999998777777777766554
No 246
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.56 E-value=4.5e-05 Score=59.76 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=24.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.+.+|+|+|++||||||.++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999884
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.55 E-value=5.8e-05 Score=55.80 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=18.6
Q ss_pred eEEEEEccCCCChhHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKL 121 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~l 121 (190)
.+|+|+||+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999988
No 248
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.53 E-value=5.4e-05 Score=57.83 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=22.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+|+|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999884
No 249
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.53 E-value=4.6e-05 Score=57.70 Aligned_cols=34 Identities=35% Similarity=0.387 Sum_probs=27.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.+|+|+|++||||||+++.|+..+. ..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-----CCEEeCchH
Confidence 4799999999999999999999873 235667754
No 250
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.52 E-value=0.00011 Score=61.93 Aligned_cols=40 Identities=33% Similarity=0.334 Sum_probs=36.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
...++.+.|..|+||||++..+|..+...|.+|.++++|.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3568889999999999999999999999999999999995
No 251
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.51 E-value=6.9e-05 Score=59.95 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+|.+|+|.||+||||||.++.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999999877
No 252
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.51 E-value=0.00013 Score=61.05 Aligned_cols=40 Identities=33% Similarity=0.306 Sum_probs=36.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..++.+.|..|+||||+++.||..+...|++|.++++|..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4577788999999999999999999999999999999974
No 253
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.51 E-value=7.5e-05 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+.+.+|+||||+||||++.+|...+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998776
No 254
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.50 E-value=6.9e-05 Score=67.58 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcC-CcEEEEeccCCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN-WKACLVCADTFR 141 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~-~~v~li~~D~~r 141 (190)
.+++.+|+|.|++||||||+++.|+..+...| ..+.+++.|..|
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 35678999999999999999999999998777 677888888643
No 255
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=0.00012 Score=54.50 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=28.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh-------cCCcEEEEec
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK-------KNWKACLVCA 137 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~-------~~~~v~li~~ 137 (190)
+..+.|.||+|+||||++..++..+.. .+..+..+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 456899999999999999999998865 3455555544
No 256
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.50 E-value=8.3e-05 Score=59.62 Aligned_cols=42 Identities=31% Similarity=0.242 Sum_probs=36.5
Q ss_pred CCeEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
++++|++.+. .|+||||++..||..+...|.+|.++++|...
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 47 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG 47 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc
Confidence 4578888855 48899999999999999889999999999853
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.50 E-value=4.4e-05 Score=62.41 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=28.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+.+|.|.|++||||||+++.|+..+. ...+++.|.+|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~----~~~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST----TEEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC----CcEEecccHHH
Confidence 46899999999999999999988431 24566677554
No 258
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.50 E-value=0.0002 Score=58.38 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=36.9
Q ss_pred CeEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhH
Q psy4311 101 PNVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGA 144 (190)
Q Consensus 101 ~~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a 144 (190)
+++|+|.+. .|+||||++..||..+...|.+|.++++|......
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l 48 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTS 48 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCH
Confidence 457888754 58999999999999999999999999999844433
No 259
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.49 E-value=9.5e-05 Score=59.08 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc----CCcEEEEe
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK----NWKACLVC 136 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~----~~~v~li~ 136 (190)
.+|.+|.|.|++||||||.++.|+.++... |.+|.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 357899999999999999999999999877 88886543
No 260
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.49 E-value=3.8e-05 Score=59.01 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+...++..++++|+|||||||+++.|++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456778899999999999999999998755
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.48 E-value=0.00011 Score=62.42 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=36.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.++.+.|++|+||||++..++......+.+|.+++.+.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46789999999999999999999999888888899988853
No 262
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.48 E-value=1.4e-05 Score=68.44 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=28.7
Q ss_pred cccCCCCCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 92 ~~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.++++...+| +++|+|||||||||++..|+..+.
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455666778 999999999999999999988774
No 263
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.47 E-value=5.5e-05 Score=59.51 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
++.+|+|+|++||||||+++.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999876
No 264
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.47 E-value=0.00028 Score=57.96 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
+.|..++|.||+|+|||++++.+|..+ +..+..+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 456788899999999999999999988 444444443
No 265
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.46 E-value=2.1e-05 Score=71.98 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.9
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la 122 (190)
++++..+++++++|+|||||||||+++.+.
T Consensus 340 ~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 340 NVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 345566789999999999999999997654
No 266
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.45 E-value=0.00021 Score=60.57 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=35.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH--hcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL--KKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~--~~~~~v~li~~D~ 139 (190)
..++.+.|-.|+||||+++.||..+. ..|++|.++++|.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 45777788999999999999999999 8899999999997
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.45 E-value=0.00012 Score=61.48 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+.+++|+||+||||||++..|+..+. ..+++.|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP-----CELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccc
Confidence 46899999999999999999998773 45666664
No 268
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.45 E-value=9.4e-05 Score=58.63 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.++.+++|+|++||||||+++.|+..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467799999999999999999999876
No 269
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.44 E-value=6.3e-05 Score=70.31 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=26.2
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
++. +++++++|+||||+||||+++.+++..
T Consensus 602 sl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 602 NLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 344 568899999999999999999999975
No 270
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.43 E-value=7.6e-05 Score=66.91 Aligned_cols=43 Identities=26% Similarity=0.303 Sum_probs=37.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+.+.+|.+.|++||||||+++.|+..+...|.++.+++.|.+|
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 3468999999999999999999999998888889999988643
No 271
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.43 E-value=9e-05 Score=55.32 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=27.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
-.+|+|.|++||||||.++.|+..+. . .+++.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg---~--~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK---L--EVLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT---C--CEEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC---C--CEEEChH
Confidence 46899999999999999999999873 2 3455654
No 272
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.43 E-value=0.00018 Score=60.93 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=36.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH--hcCCcEEEEeccC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL--KKNWKACLVCADT 139 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~--~~~~~v~li~~D~ 139 (190)
..+++.+.|..|+||||++..+|..+. ..|.+|.++++|.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 357899999999999999999999999 8899999999994
No 273
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.42 E-value=0.00015 Score=60.21 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=33.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH-hcCCcEEEEecc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL-KKNWKACLVCAD 138 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~-~~~~~v~li~~D 138 (190)
+..+.|.||+|+|||+++.+++..+. ..+.+|.++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 56799999999999999999999998 888888877665
No 274
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.42 E-value=9.8e-05 Score=62.47 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=29.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++.+|+|+||+||||||++..||..+. ..++++|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence 3467999999999999999999998763 345666653
No 275
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.42 E-value=0.00015 Score=60.69 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=29.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
..+.+++++||+||||||++..|+..+. ..++++|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 3467999999999999999999998763 45677775
No 276
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.41 E-value=4.9e-05 Score=72.01 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=27.8
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
++++..+++++++|+||||+||||+++.++...
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 445666778999999999999999999998653
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.41 E-value=0.0001 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
++.+|+|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 278
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.41 E-value=8.9e-05 Score=55.30 Aligned_cols=34 Identities=35% Similarity=0.399 Sum_probs=27.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.+|+|.|++||||||+++.|+..+. ..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-----YEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CcEEcccHH
Confidence 4799999999999999999999873 335666643
No 279
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.40 E-value=0.0001 Score=59.20 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
++.+++|.||+||||||+++.|+..+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456999999999999999999998883
No 280
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.40 E-value=9.8e-05 Score=57.30 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.|+|.||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998877
No 281
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.40 E-value=0.00011 Score=57.11 Aligned_cols=36 Identities=36% Similarity=0.521 Sum_probs=30.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
...+|+++|+.||||||.++.|+..+ | +.++++|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 45799999999999999999999876 3 556888765
No 282
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.39 E-value=0.00012 Score=61.48 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=28.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+.+++|+||+||||||++..|+..+. ..++++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCc
Confidence 56899999999999999999988763 45678885
No 283
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.38 E-value=9.1e-05 Score=56.54 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
...++++|+|||||||++..+++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999998643
No 284
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=8.2e-05 Score=62.10 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=25.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHHhcCCcEEEE
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~~~~~~~v~li 135 (190)
++|.||+|+||||++..++..+...++++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 89999999999999999999986544433333
No 285
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.37 E-value=0.00029 Score=54.78 Aligned_cols=38 Identities=18% Similarity=0.017 Sum_probs=34.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
.++.+..+.||.|+||||.+..++..+...+.+|.++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45789999999999999999999999988899999985
No 286
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.37 E-value=8.7e-05 Score=63.14 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=23.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.+ +++|+|||||||||++..|+..+.
T Consensus 22 ~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 344 888999999999999999998764
No 287
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.37 E-value=0.00023 Score=59.50 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=31.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEeccCCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCADTFR 141 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~D~~r 141 (190)
.++|.||+|+||||++..++..+... +..+..+.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 89999999999999999999998766 4666666654433
No 288
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.37 E-value=0.00016 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
+..+.|.||+|+||||++..++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 446799999999999999999998865
No 289
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.36 E-value=0.00017 Score=60.03 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=31.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc---CCcEEEEecc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK---NWKACLVCAD 138 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~---~~~v~li~~D 138 (190)
..+..++|.||+|+||||+++.++..+... +..+..+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 456789999999999999999999988765 5556555543
No 290
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.35 E-value=0.00011 Score=57.54 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+..|+|.|++||||||.++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 291
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.35 E-value=0.00011 Score=56.27 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|+|||||||++..+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999985
No 292
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.35 E-value=0.00024 Score=61.96 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=36.7
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADT 139 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~ 139 (190)
.++|.++.+.|+||+||||++..++..... .|.+|.+++.+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 457889999999999999999999999876 467899998775
No 293
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.35 E-value=0.00014 Score=57.41 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.+..|+|.|++||||||+++.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999883
No 294
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.34 E-value=0.00013 Score=54.19 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=26.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+|+|.|++||||||+++.|+..+. ..+++.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-----IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCEEECcHH
Confidence 689999999999999999999873 234566643
No 295
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.34 E-value=0.0001 Score=63.70 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=28.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
..+.+|+++|++||||||+++.|+..+ ...+++.|.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 293 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLG 293 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHH
Confidence 457899999999999999999987654 13445566554
No 296
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.34 E-value=0.00011 Score=62.70 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=25.2
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
++...++ +++|+||||+||||++..++....
T Consensus 21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~~~~ 51 (359)
T 2o5v_A 21 TLNFPEG-VTGIYGENGAGKTNLLEAAYLALT 51 (359)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCC-eEEEECCCCCChhHHHHHHHHhcc
Confidence 3444455 999999999999999999987653
No 297
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.33 E-value=0.00029 Score=57.40 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCC----cEEEEecc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW----KACLVCAD 138 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~----~v~li~~D 138 (190)
..+..+.|.||+|+||||+++.++..+...+. .+..+++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 34567999999999999999999999876432 45455444
No 298
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.32 E-value=0.0007 Score=53.65 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
..+..+.|.||+|+||||+++.++..+. ..+..+.+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~~ 73 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGA 73 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEETT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEechH
Confidence 3456789999999999999999998773 344444443
No 299
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.32 E-value=0.00023 Score=60.79 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=36.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.++.|.|++|+||||++..++......+++|.+++.+.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45789999999999999999999998887788999998874
No 300
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.32 E-value=0.0003 Score=59.85 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=32.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
...++++|++|+||||+++.++..+...+.++.+++.+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45689999999999999999999988888888777544
No 301
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00019 Score=65.20 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
+...|+++|.+++||||++..|..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~ 189 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLY 189 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHS
T ss_pred CceEEEEEECCCCCHHHHHHHHHH
Confidence 345899999999999999999863
No 302
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.32 E-value=0.00011 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.|+|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998766
No 303
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.31 E-value=9.2e-05 Score=70.24 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=24.9
Q ss_pred CCCCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 95 ~~~~~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
++..+++++++|+||||+||||+++.++..
T Consensus 656 sl~~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 656 YFEKDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp EEETTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeecCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344456889999999999999999999543
No 304
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.31 E-value=0.0003 Score=56.03 Aligned_cols=38 Identities=13% Similarity=-0.040 Sum_probs=33.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
.++.++.+.|++|+||||++..++..+...|.+|.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45789999999999999999999999988888998883
No 305
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.31 E-value=0.00016 Score=55.38 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+|+|.|++||||||+++.|+..+. +.+++.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CceeccchH
Confidence 899999999999999999999873 445666654
No 306
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.31 E-value=0.00012 Score=60.29 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
..+..++|.||+|+||||+++.++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999999876
No 307
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.30 E-value=0.00032 Score=58.09 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=64.2
Q ss_pred HHhCCcCHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHhhcCCCCcccC--C--CCCCCeEEEEEccCCCCh
Q psy4311 39 LLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQ--P--QKGKPNVIMFVGLQGSGK 114 (190)
Q Consensus 39 L~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~l~~~~~~~~--~--~~~~~~vi~l~G~~G~GK 114 (190)
....+++.+-+.++++..++.+.. .+.. ..+.. +. ..-...+......++ + -.+++.++.|.|++|+||
T Consensus 39 ~~~~gis~~~a~~~i~~a~~~~~~-~~~~---~~~~~-~~--~~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGK 111 (322)
T 2i1q_A 39 TDIEGISEKAAAKMIMGARDLCDL-GFKS---GIDLL-KQ--RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGK 111 (322)
T ss_dssp HTSTTCCHHHHHHHHHHHHHHTTC-SCCC---THHHH-HH--HTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSH
T ss_pred HHhhCcCHHHHHHHHHHHHHhhhh-cCCc---HHHHH-HH--hccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCH
Confidence 445789999999999888776432 1211 11111 10 000112222222211 1 125688999999999999
Q ss_pred hHHHHHHHHHHH------------hcC----CcEEEEeccC-CChhHHHHHHHHhhhcCCc
Q psy4311 115 TTTCTKLAYHYL------------KKN----WKACLVCADT-FRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 115 TT~~~~la~~~~------------~~~----~~v~li~~D~-~r~~a~eql~~~~~~~~i~ 158 (190)
||++..++.... ..| ++|.+++.+. |+. +++..++++++++
T Consensus 112 T~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~---~~l~~~~~~~g~~ 169 (322)
T 2i1q_A 112 TQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP---ERIMQMAEHAGID 169 (322)
T ss_dssp HHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH---HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH---HHHHHHHHHcCCC
Confidence 999999998632 123 5788887764 443 4555555566554
No 308
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.00034 Score=55.83 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.-++|+||||+||||+++.++..+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34589999999999999999999873
No 309
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.30 E-value=0.00032 Score=58.33 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+|.++.+.|+||+||||++..++.....++.+|.+++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 56889999999999999999999988877778899988774
No 310
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00011 Score=61.05 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.7
Q ss_pred EEEEccCCCChhHHHHHHHHHH-HhcCC
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHY-LKKNW 130 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~-~~~~~ 130 (190)
++|.||||+||||+++.+++.+ .+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999954 44333
No 311
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.29 E-value=0.00077 Score=61.24 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=38.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCce
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF 159 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~ 159 (190)
.+..+.||||+|||||+..+...+...+.+|.++ +.+ ..|++++..--...+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~-a~T--N~AvD~i~erL~~~~~~i 260 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC-APS--NIAVDNLVERLALCKQRI 260 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE-ESS--HHHHHHHHHHHHHTTCCE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE-cCc--hHHHHHHHHHHHhcCCce
Confidence 4789999999999999999999888888887655 433 345555543323334443
No 312
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00035 Score=54.79 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=34.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH-HhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY-LKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~-~~~~~~v~li~~D~~ 140 (190)
++|.++.+.|+||+||||++..++... ...+..+.+++.+..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 467899999999999999999988764 455677888877743
No 313
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.28 E-value=0.00016 Score=56.90 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.|+|.|++||||||.++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 314
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.27 E-value=0.00012 Score=68.12 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=24.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+++++|+||||+||||+++.+++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 78999999999999999999999763
No 315
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.27 E-value=0.00019 Score=55.96 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.+.+|+||||+||||++.+|...+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 56999999999999999999988775
No 316
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.26 E-value=0.00014 Score=62.89 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
..+.+++|+||||+||||++..++..+..
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 45789999999999999999999998754
No 317
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=97.25 E-value=0.00041 Score=59.18 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=36.6
Q ss_pred CCCCCeEEEEE-ccCCCChhHHHHHHHHHHH------hcCCcEEEEeccCC
Q psy4311 97 QKGKPNVIMFV-GLQGSGKTTTCTKLAYHYL------KKNWKACLVCADTF 140 (190)
Q Consensus 97 ~~~~~~vi~l~-G~~G~GKTT~~~~la~~~~------~~~~~v~li~~D~~ 140 (190)
...++++|++. |--|+||||++..||..+. ..|.+|.++++|..
T Consensus 104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 104 RYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp TCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 34557788887 5558999999999999997 46899999999974
No 318
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.24 E-value=3e-05 Score=70.33 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=23.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEE
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLV 135 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li 135 (190)
.++++|||||||||++..|++.+.+ ..+.|.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~ 80 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRC 80 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCS
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEc
Confidence 3999999999999999999998766 34545433
No 319
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.24 E-value=0.00014 Score=65.02 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
++.+++|+||||+||||+++.++..+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5779999999999999999999999854
No 320
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.24 E-value=0.00019 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.|+|.|++||||||.++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 321
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.23 E-value=0.00022 Score=62.50 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=29.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
..+.+|.++|++||||||+++.|+..+.........+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45679999999999999999999998875554444444
No 322
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.22 E-value=0.00034 Score=63.00 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=35.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~ 143 (190)
..++.+.|++|+||||+++.++..+...+.+|.++ +.+.++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~-ApT~~Aa 245 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC-APTGKAA 245 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE-ESSHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe-cCcHHHH
Confidence 56899999999999999999999998888888655 5555543
No 323
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.22 E-value=0.00022 Score=59.82 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+.+.+|+|||||||||++..+...+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999887655
No 324
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.21 E-value=0.00044 Score=58.42 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=37.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++.++.+.|+||+||||++..++......+.+|.+++...-
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 467899999999999999999999998888889999988753
No 325
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.20 E-value=0.00025 Score=61.74 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=33.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhc--CCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKK--NWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~--~~~v~li~~D~~ 140 (190)
+..++|.||+|+||||++..++..+... +.++..+.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4579999999999999999999998665 667777776654
No 326
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.20 E-value=0.00089 Score=51.98 Aligned_cols=36 Identities=36% Similarity=0.394 Sum_probs=31.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
.|.|=|+-||||||.++.|+.++...|.+|.+..-.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 477889999999999999999999999888766443
No 327
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.20 E-value=0.00024 Score=58.18 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=27.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+.+.+|+|.|++||||||+++.|+. + |. .++++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-l---g~--~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-L---GA--YIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-H---TC--EEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C---CC--cEEehhHH
Confidence 4578999999999999999999983 3 33 34666643
No 328
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.19 E-value=0.00012 Score=60.62 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.-++++|+|||||||+++.|.+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999998765
No 329
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.18 E-value=0.00039 Score=57.90 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=31.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhc------CCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKK------NWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~------~~~v~li~~D~ 139 (190)
..+..+.|.||+|+||||++..++..+... +..+..+.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 446689999999999999999999988653 44455555443
No 330
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.18 E-value=0.00052 Score=53.48 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=47.4
Q ss_pred EEEEE-ccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCChhHHHHHHHHhhhcCCce--eecCCCCCCcccccCceeeC
Q psy4311 103 VIMFV-GLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF--YGSSKGKRNPIHNMGLSLIP 179 (190)
Q Consensus 103 vi~l~-G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~--~~~~~~~~~~l~~~~lvlid 179 (190)
+|++. +-.|+||||++..||..+...| +|.++++|..... ...+.. .++|. .... ........+|++++|
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~-~~~~~~----~~l~~~vi~~~-~l~~l~~~yD~viiD 74 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA-TGWGKR----GSLPFKVVDER-QAAKYAPKYQNIVID 74 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH-HHHHHH----SCCSSEEEEGG-GHHHHGGGCSEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH-HHHhcC----CCCCcceeCHH-HHHHhhhcCCEEEEe
Confidence 56665 5569999999999999999889 9999999987532 222211 11221 1100 111122347888999
Q ss_pred CCCc
Q psy4311 180 TYEK 183 (190)
Q Consensus 180 ~~~r 183 (190)
+.+.
T Consensus 75 ~p~~ 78 (209)
T 3cwq_A 75 TQAR 78 (209)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8775
No 331
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.18 E-value=0.00033 Score=53.31 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=23.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKN 129 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~ 129 (190)
.+.|.||+|+||||++..++..+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 389999999999999999999875443
No 332
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.16 E-value=0.00025 Score=61.10 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.+++..++|+|+|||||||+++.|++.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 356789999999999999999999983
No 333
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.16 E-value=0.00048 Score=53.53 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=30.7
Q ss_pred eEEEEEcc-CCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 102 NVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 102 ~vi~l~G~-~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
+++++.|. .|+||||++..||..+...|++|.+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 46788886 589999999999999999999999875
No 334
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.15 E-value=0.00047 Score=59.67 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=28.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+.+++|+||+||||||++..|+..+. ..++++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 45899999999999999999999884 23577764
No 335
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.14 E-value=0.00053 Score=57.33 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhc--------CCcEEEEeccC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKK--------NWKACLVCADT 139 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~--------~~~v~li~~D~ 139 (190)
.+..+.|.||+|+||||++..++..+... +..+..+++..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 45689999999999999999999988654 55666665543
No 336
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.14 E-value=0.00051 Score=55.67 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=28.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+..+.|.||+|+||||+++.++..+ +..+..+.+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence 4568899999999999999999988 334555555433
No 337
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.13 E-value=0.0012 Score=55.62 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=27.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
..+..++|.||+|+||||+++.++..+ +..+..+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 346689999999999999999999876 344444444
No 338
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.13 E-value=0.00099 Score=52.70 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=25.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
+|.+|.|.|++||||||.+..|+.++..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999999999999999964
No 339
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=97.13 E-value=0.0003 Score=59.59 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=34.9
Q ss_pred eEEEEE-ccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 102 NVIMFV-GLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 102 ~vi~l~-G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
++|+|. +-.|+||||++..||..+...|.+|.++++|....
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCN 43 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Confidence 356666 55688999999999999999999999999998654
No 340
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.12 E-value=0.00036 Score=62.11 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=35.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHh-cC-CcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KN-WKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~-~~v~li~~D~ 139 (190)
+.+.+|+|.|++||||||+.+.|+..+.. .| ..+.+++.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 45689999999999999999999999986 54 5677898887
No 341
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.00092 Score=52.77 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=36.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH-hcC--CcEEEEeccCCChhHHHHHHHHhhhcC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL-KKN--WKACLVCADTFRAGAYDQLKQNATKAR 156 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~-~~~--~~v~li~~D~~r~~a~eql~~~~~~~~ 156 (190)
++.++++||+||||||++..+..... ..+ ..+.++.....|..+.+..+.++...+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 56899999999999998776654432 222 234445555667666665566655444
No 342
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=97.11 E-value=0.00035 Score=59.77 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=29.1
Q ss_pred CCCeEEEEE-ccCCCChhHHHHHHHHHHH------hcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFV-GLQGSGKTTTCTKLAYHYL------KKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~-G~~G~GKTT~~~~la~~~~------~~~~~v~li~~D~~ 140 (190)
+++++|+++ |--|+||||++..||..+. ..|.+|.++++|..
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 467788887 5568999999999999998 57899999999974
No 343
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.11 E-value=0.00034 Score=60.47 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=34.5
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHHHHhcCC--cEEEEecc
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW--KACLVCAD 138 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~--~v~li~~D 138 (190)
+.++..+|+.++++||+|+||||++..|++....++. .+.++.++
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG 213 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 213 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence 3356678999999999999999999999998865433 34445455
No 344
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.10 E-value=0.00026 Score=55.02 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=27.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+.+++++|++||||||+++.|+..+. +.+++.|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g-----~~~~~~d~ 36 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS-----MIYVDTGA 36 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-----CEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-----CceecCCh
Confidence 45899999999999999999988762 34566654
No 345
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00057 Score=59.64 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=25.4
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
...|+-+.|.||||+|||++++++|..+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 34567799999999999999999999874
No 346
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.09 E-value=0.00027 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.|.|+||+||||||+++.|...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987765
No 347
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0006 Score=59.39 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=28.8
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
...|+=++|.||||+|||++++.+|..+. ..+..+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~ 239 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNG 239 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 34566799999999999999999999884 34444444
No 348
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.08 E-value=0.00028 Score=67.57 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+++++|+||||+||||+++.+ +.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 789999999999999999999 5543
No 349
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.07 E-value=0.0003 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
++..++++|++||||||++..+++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 350
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.06 E-value=0.00026 Score=58.91 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=22.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.++ +.+|+|||||||||++..|...+
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 344 99999999999999999998654
No 351
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.06 E-value=0.00031 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~ 123 (190)
..++++|++||||||++..+++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999986
No 352
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.05 E-value=0.0014 Score=57.12 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=37.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
.++.++.+.|+||+||||++..++......|.+|.+++...-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 578899999999999999999999998777888999988753
No 353
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.05 E-value=0.00061 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+..+.|.||+|+||||+++.++..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45579999999999999999999876
No 354
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.04 E-value=0.00036 Score=51.12 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=26.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
-+.|.||+|+|||++++.++......+..+. +.+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 4899999999999999999887655444444 4443
No 355
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00083 Score=50.55 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
....++++|++||||||++..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 356
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.04 E-value=0.00072 Score=52.91 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=29.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
+..|.|=|+.||||||.++.|+.++. .+.++.+..-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~e 37 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTRE 37 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEES
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeC
Confidence 46899999999999999999999996 4677766543
No 357
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.03 E-value=0.00036 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
++..++|.||+|+||||+++.++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999877
No 358
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.02 E-value=0.00044 Score=58.23 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=29.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
++.++.|.||+|+||||++..++.. .+.++.+++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 4568899999999999999999886 4566777777
No 359
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.01 E-value=0.00046 Score=53.01 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
+..+.|.||+|+||||++..++..+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 358999999999999999999988754
No 360
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.00 E-value=0.00032 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 361
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.00 E-value=0.0019 Score=58.48 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=38.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccCCChhHHHHHHHHhhhcCCcee
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADTFRAGAYDQLKQNATKARIPFY 160 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~~ 160 (190)
.+..+.||+|+||||++..+...+.. .+.+|.++ +.+. .|.+++.......++++.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~-a~tn--~A~~~l~~~l~~~~~~~~ 252 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC-APSN--IAVDQLTEKIHQTGLKVV 252 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE-ESSH--HHHHHHHHHHHTTTCCEE
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-eCcH--HHHHHHHHHHHhcCCeEE
Confidence 37889999999999999999988865 45566544 4443 455666554444565543
No 362
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0008 Score=58.73 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
..+|+=++|.||||+|||++++++|..+. ..+..+.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~~s 249 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSPAS 249 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehh
Confidence 34567799999999999999999999884 445445443
No 363
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.97 E-value=0.00098 Score=57.88 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADT 139 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~ 139 (190)
.+++.++.+.|+||+||||++..++..... .+.+|.+++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 356889999999999999999999998875 477899888764
No 364
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.97 E-value=0.0021 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.++.-+.|.||+|+|||++++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345789999999999999999999987
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.96 E-value=0.00044 Score=62.45 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
.+..++|+||||+||||+++.+++.+.........+.+
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 34589999999999999999999988765433333433
No 366
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.96 E-value=0.00047 Score=54.54 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
...++|.||+|+||||++.+|+..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999874
No 367
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.95 E-value=0.00046 Score=54.69 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+|.+|+|.|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999999884
No 368
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.94 E-value=0.0015 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~~ 126 (190)
++|+||||+||||+++.+++.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 369
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.93 E-value=0.00083 Score=53.75 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=32.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
..+.|.|++|+|||++++.++......+..+..+.+..+..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 35889999999999999999988765556666676665543
No 370
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0015 Score=54.64 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
++|..+.|.||||+|||++++.++..+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999864
No 371
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.89 E-value=0.00089 Score=55.85 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=25.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKK 128 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~ 128 (190)
+..+.|.||+|+||||+++.++..+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5689999999999999999999998643
No 372
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.87 E-value=0.00012 Score=68.63 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHH-HHHHHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTK-LAYHYL 126 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~-la~~~~ 126 (190)
++++..+.|++++|+|+|||||||+++. |++.+.
T Consensus 515 ~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 515 NLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp EEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred cceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 3456678899999999999999999996 776654
No 373
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.82 E-value=0.0013 Score=55.41 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=32.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhc--CCcEEEEecc
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKK--NWKACLVCAD 138 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~--~~~v~li~~D 138 (190)
++ ++.+.||+|+||||++..++...... ++++.+++..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 45 89999999999999999988887665 6788887765
No 374
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.81 E-value=0.00051 Score=56.72 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+..+++++|+|||||||++..|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999864
No 375
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.80 E-value=0.0012 Score=56.29 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
..++|+|++|+||||+++.|+..+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4699999999999999999999875
No 376
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.80 E-value=0.00093 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
..+..+.|.||+|+||||+++.++..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345689999999999999999999975
No 377
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.79 E-value=0.0015 Score=60.27 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=30.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..++|.||+|+|||++++.++..+...+..+..+++..|
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 379999999999999999999998655555555555433
No 378
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.79 E-value=0.00099 Score=55.98 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+..++|.||+|+||||+++.++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35579999999999999999999987
No 379
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.77 E-value=0.0013 Score=55.52 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=27.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
+..+.|.||+|+||||+++.++..+ +..+..+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 4468999999999999999999887 3344444443
No 380
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=96.77 E-value=0.00081 Score=57.52 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=34.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
..++.+.|..|+||||++..+|..+...|.+|.++++
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 3578899999999999999999999999999999987
No 381
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.77 E-value=0.0029 Score=59.06 Aligned_cols=55 Identities=29% Similarity=0.439 Sum_probs=38.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccCCChhHHHHHHHHhhhcCCce
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADTFRAGAYDQLKQNATKARIPF 159 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~ 159 (190)
.+..+.||+|+||||++..+...+.. .+.+|. +.+.+. .|.+++.......++++
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~il-v~a~tn--~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVL-VCAPSN--IAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEE-EEESSH--HHHHHHHHHHHTTTCCE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEE-EEcCcH--HHHHHHHHHHHHhCcce
Confidence 47889999999999999999988876 455554 445554 45566655444455543
No 382
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.0013 Score=58.12 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
.+..+.|.||+|+||||++..++..+ +..+..+.+...+.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 35689999999999999999999887 56666666655544
No 383
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.76 E-value=0.00046 Score=59.87 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.-++|+|+|||||||++..|++...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3479999999999999999998653
No 384
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.75 E-value=0.0021 Score=53.24 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.++.-+.|.||+|+|||++++.++..+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345679999999999999999999876
No 385
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0019 Score=56.27 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
...|+=+.|.||||+|||++++.+|..+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 34566799999999999999999999874
No 386
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.75 E-value=0.00093 Score=53.49 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=28.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCCh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r~ 142 (190)
...++|+|++||||||.+..|+..+. . ..+-..|.+|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g---~-~~is~gdllR~ 45 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG---I-PQISTGDMLRA 45 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT---C-CEECHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC---C-CeeechHHHHH
Confidence 34789999999999999999999883 2 22333466665
No 387
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.75 E-value=0.00024 Score=61.67 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=25.9
Q ss_pred cCCCCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 94 ~~~~~~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+++..+.+..++|+|+|||||||+++.|++.
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3444556778999999999999999999876
No 388
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.74 E-value=0.0019 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.-++|+||||+||||+++.+++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 348899999999999999999876
No 389
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.74 E-value=0.00027 Score=67.27 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.2
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la 122 (190)
++++..+.|.+++|+|+|||||||+++.+.
T Consensus 660 ~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 660 GIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred CceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 345566789999999999999999999853
No 390
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.73 E-value=0.00063 Score=51.24 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.++++|++||||||++..+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 391
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.73 E-value=0.0021 Score=57.65 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=35.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..++.+.|..|+||||++..+|..+...|.+|.++++|..
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 4577789999999999999999999999999999999953
No 392
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.73 E-value=0.00088 Score=62.57 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 96 ~~~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+....+..++|+||||+||||+++.+++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3456678899999999999999999998763
No 393
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.71 E-value=0.001 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+..++|+||+|+||||++..|+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999988887654
No 394
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0013 Score=57.86 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=25.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
...|+-++|.||||+|||++++.+|..+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 34567799999999999999999999874
No 395
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.0011 Score=54.67 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.|.||+|+||||+++.++..+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999875
No 396
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.70 E-value=0.0016 Score=56.73 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=30.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCC-cEEEEeccCCC
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNW-KACLVCADTFR 141 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~-~v~li~~D~~r 141 (190)
.+.|.|++|+||||++..++.++...+. ++.++ +.+.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~-a~T~~ 85 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA-APTHA 85 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESSHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe-cCcHH
Confidence 8999999999999999999999988776 45444 44433
No 397
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.69 E-value=0.002 Score=49.62 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=24.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
++.++|++||||||++..++.. +.++..++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT 31 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIAT 31 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEEC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEec
Confidence 3789999999999999998854 445655555
No 398
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.68 E-value=0.0011 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.....++++|++||||||++..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999753
No 399
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.68 E-value=0.0013 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
++...|+++|++||||||++..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999875
No 400
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0019 Score=55.76 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.+|+=+.|.||||+|||++++.+|..+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 4456699999999999999999999874
No 401
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.66 E-value=0.0012 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.++++|++|+||||++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 402
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.64 E-value=0.00087 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.....|+|+|++||||||++..|.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34568999999999999999999874
No 403
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.64 E-value=0.00026 Score=67.22 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHHHHHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~~~la 122 (190)
++++..+.|.+++|+|+|||||||+++.+.
T Consensus 642 ~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 642 NVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 345566789999999999999999999853
No 404
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.64 E-value=0.0039 Score=49.32 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=35.4
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEe
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~ 136 (190)
..++.+..+.|+-|+||||.+-.++..+...+.+|.++.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456889999999999999999999999999999999885
No 405
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.64 E-value=0.0015 Score=57.56 Aligned_cols=43 Identities=19% Similarity=0.078 Sum_probs=37.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHHhc-CCcEEEEeccCC
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK-NWKACLVCADTF 140 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~~~-~~~v~li~~D~~ 140 (190)
..++.++.+.|+||+||||++..++...... |.+|.+++.+.-
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 3578899999999999999999999988765 788999988753
No 406
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.63 E-value=0.0018 Score=56.30 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
++.-+.|.||+|+||||+++.+|..+..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 3457999999999999999999999853
No 407
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.63 E-value=0.0013 Score=55.65 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+.+.+|+|+|||||||++..|...+
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999844
No 408
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.63 E-value=0.0034 Score=52.82 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=28.8
Q ss_pred CCeEEEE--EccCCCChhHHHHHHHHHHHhc------CCcEEEEec
Q psy4311 100 KPNVIMF--VGLQGSGKTTTCTKLAYHYLKK------NWKACLVCA 137 (190)
Q Consensus 100 ~~~vi~l--~G~~G~GKTT~~~~la~~~~~~------~~~v~li~~ 137 (190)
.+..+.+ .||+|+||||++..++..+... +..+..+.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 3557777 9999999999999999887653 444555554
No 409
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.62 E-value=0.0016 Score=50.80 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=28.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH-----hcC-CcEEEEeccC
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL-----KKN-WKACLVCADT 139 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~-----~~~-~~v~li~~D~ 139 (190)
+-++++.|++|+|||+.+..++.... ..| ..+.+..+|.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~g 49 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKG 49 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCC
Confidence 45899999999999999877655442 445 5565666664
No 410
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.62 E-value=0.0021 Score=60.26 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
..++|.||+|+|||++++.|+..+...+..+..+++..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 589999999999999999999998765566666666544
No 411
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.62 E-value=0.00039 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=24.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.++.+|+|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998873
No 412
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.62 E-value=0.0011 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|++||||||++..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 413
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.62 E-value=0.00061 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
-+.|.||+|+||||+++.++..+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 414
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.61 E-value=0.0013 Score=47.72 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|++||||||++..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999988753
No 415
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.60 E-value=0.0011 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++|+|++||||||++..|.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999875
No 416
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.60 E-value=0.0015 Score=50.26 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
....++++|++|+||||++..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998754
No 417
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.58 E-value=0.0013 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 357899999999999999998764
No 418
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.57 E-value=0.002 Score=48.22 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
....|+++|++||||||++..|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999875
No 419
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.57 E-value=0.0016 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
....++++|++||||||++..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999998764
No 420
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.56 E-value=0.0018 Score=47.36 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
+...++++|++||||||++..+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999965
No 421
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.55 E-value=0.0014 Score=48.32 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+...++++|++||||||++..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998764
No 422
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.55 E-value=0.0026 Score=52.50 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+..+.|.||+|+||||+++.++..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3458999999999999999998875
No 423
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.54 E-value=0.0015 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|++||||||++..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999998764
No 424
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.52 E-value=0.0022 Score=56.07 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
+.-+.|.||+|+||||+++.||..+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44699999999999999999999884
No 425
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.51 E-value=0.00071 Score=64.05 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.3
Q ss_pred ccCCCCCCCeEEEEEccCCCChhHHH
Q psy4311 93 AHQPQKGKPNVIMFVGLQGSGKTTTC 118 (190)
Q Consensus 93 ~~~~~~~~~~vi~l~G~~G~GKTT~~ 118 (190)
++++..+.|.+++++|||||||||++
T Consensus 602 ~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 602 NIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccceEEcCCcEEEEEccCCCChhhhH
Confidence 34556678999999999999999997
No 426
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.51 E-value=0.0018 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+...++++|++||||||++..+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998865
No 427
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.50 E-value=0.0015 Score=47.64 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|++|+||||++..+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999765
No 428
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.50 E-value=0.0016 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
...++++|++||||||++..+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999986
No 429
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.50 E-value=0.0013 Score=48.81 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLA 122 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la 122 (190)
.+...++++|++||||||++..+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999998886
No 430
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.006 Score=56.97 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=36.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHh-cCCcEEEEeccCCChhHHHHHHHHhhhcCCce
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLK-KNWKACLVCADTFRAGAYDQLKQNATKARIPF 159 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~-~~~~v~li~~D~~r~~a~eql~~~~~~~~i~~ 159 (190)
.++.+.||+|+||||++..+...+.. .+.+|.++ +.+ ..|.+++...-...++.+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~-a~t--n~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVC-APS--NVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE-ESS--HHHHHHHHHHHHHTTCCE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEE-cCc--HHHHHHHHHHHHhhCccE
Confidence 47889999999999999999887754 46667655 333 344555544333344443
No 431
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.49 E-value=0.0016 Score=47.45 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|++||||||++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 432
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.48 E-value=0.0016 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 433
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.48 E-value=0.00092 Score=62.47 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
..++..++|+||||+||||+++.+|..+.
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 34667899999999999999999999884
No 434
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.47 E-value=0.0017 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~ 123 (190)
..++++|++|+||||++..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 435
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.47 E-value=0.0021 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
.+.-++|.||+|+||||+++.++..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 345689999999999999999999873
No 436
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.47 E-value=0.0016 Score=47.56 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998754
No 437
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.47 E-value=0.0025 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
+..+.|.||+|+||||+++.++..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999876
No 438
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.46 E-value=0.0014 Score=52.05 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
+..+|++.|++||||||+++.||..+. ..+++.|.++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg-----~~~~d~~~~~ 49 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG-----IHFYDDDILK 49 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT-----CEEECHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC-----CcEEcHHHHH
Confidence 457999999999999999999999883 3356666544
No 439
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.45 E-value=0.0017 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|++||||||++..+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999763
No 440
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.0019 Score=52.46 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.1
Q ss_pred EEEEccCCCChhHHHHHHHHHHHh
Q psy4311 104 IMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 104 i~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
+.|.||+|+||||++..++..+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999998753
No 441
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.44 E-value=0.0017 Score=47.22 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
...++++|++|+||||++..+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 34799999999999999999986
No 442
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.44 E-value=0.0028 Score=57.30 Aligned_cols=42 Identities=29% Similarity=0.356 Sum_probs=31.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh----cCCcEEEEeccCCChh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK----KNWKACLVCADTFRAG 143 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~----~~~~v~li~~D~~r~~ 143 (190)
+.++.+.|++|+||||+++.+...+.. .+.+| ++.+.+.+++
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~v-ll~APTg~AA 209 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRI-RLAAPTGKAA 209 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCE-EEEBSSHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeE-EEEeCChhHH
Confidence 468999999999999999999988863 33455 4446665543
No 443
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.44 E-value=0.0019 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++|+||||++..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 357999999999999999998754
No 444
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0015 Score=47.57 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~ 123 (190)
..++++|++||||||++..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999876
No 445
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=96.42 E-value=0.0032 Score=54.15 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=30.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
..-++++|++|+||||++..+...+...+.++.+++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4579999999999999998888887777777766643
No 446
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.41 E-value=0.0036 Score=51.35 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
.+..+.+.||+|+||||++..++..+ +..+..+.+...+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~ 85 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK 85 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC
Confidence 34678888999999999999999877 3345555554444
No 447
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.40 E-value=0.0022 Score=48.06 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
....++++|++||||||++..+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998754
No 448
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.39 E-value=0.0018 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~ 123 (190)
.++++|++||||||++..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999863
No 449
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.38 E-value=0.0028 Score=55.02 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.++.-++|.||+|+|||++++.++..+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999999987
No 450
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.38 E-value=0.0028 Score=64.30 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=37.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
+++.++.|.||+|+||||++..++......|+++.+++.+-
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 46889999999999999999999998888899999998874
No 451
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.002 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
.+.|.||+|+||||++..++..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3899999999999999999998753
No 452
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.37 E-value=0.0017 Score=47.31 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.5
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~ 123 (190)
..++++|++||||||++..+.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999864
No 453
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.37 E-value=0.0036 Score=53.14 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccC
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~ 139 (190)
.+..++|.||+|+|||+++..++..+ +..+..+.+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~ 183 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAAS 183 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHH
Confidence 35689999999999999999998875 34455555443
No 454
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.37 E-value=0.0025 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=20.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
+...++++|++|+||||++..+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999988875
No 455
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.36 E-value=0.002 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
...|+++|++|+||||++..+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999886
No 456
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.36 E-value=0.0019 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++||||||++..|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 457
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0029 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
....|+++|++||||||++..+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 346799999999999999999976
No 458
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.35 E-value=0.002 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++||||||++..|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 459
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.35 E-value=0.0077 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
..+.|.||+|+||||+++.++..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4799999999999999999998874
No 460
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.35 E-value=0.0022 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=20.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
...++++|++||||||++..+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999875
No 461
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.35 E-value=0.002 Score=47.31 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~ 123 (190)
..++++|++|+||||++..+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999875
No 462
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.34 E-value=0.0022 Score=48.99 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
...++++|++||||||++..+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 463
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.34 E-value=0.0021 Score=46.68 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.++++|++|+||||++..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 464
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.34 E-value=0.0021 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++|+||||++..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999998763
No 465
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.34 E-value=0.003 Score=53.64 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+++++|+|||||||++..|++..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 469999999999999999998754
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.33 E-value=0.0026 Score=48.30 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
.+...|+++|++||||||++..+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4467899999999999999999875
No 467
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.30 E-value=0.0023 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999764
No 468
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.30 E-value=0.003 Score=55.24 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
...+.|+||+|+||||++..++..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999999999853
No 469
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.30 E-value=0.0023 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++||||||++..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457999999999999999999863
No 470
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.29 E-value=0.0021 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy4311 103 VIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 103 vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.++++|++||||||++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998764
No 471
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0024 Score=47.12 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++|+||||++..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999998763
No 472
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.26 E-value=0.0024 Score=47.48 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++||||||++..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998764
No 473
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.26 E-value=0.0032 Score=51.96 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=30.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCCC
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~r 141 (190)
..+.|.|++|+|||++++.++......+.....+.+....
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 3588999999999999999998775555555555555443
No 474
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.25 E-value=0.0024 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 475
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0033 Score=47.52 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+...|+++|++||||||++..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999998764
No 476
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.25 E-value=0.0032 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+...|+++|++||||||++..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998854
No 477
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.24 E-value=0.0061 Score=56.66 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=36.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh-c--CCcEEEEeccCCChhHHHHHHHHhhhcCCc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK-K--NWKACLVCADTFRAGAYDQLKQNATKARIP 158 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~-~--~~~v~li~~D~~r~~a~eql~~~~~~~~i~ 158 (190)
+.+++++||||+||||++..+...... . +..+.++ -..|..+.++.+.++...++.
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl--~P~r~La~q~~~~l~~~~~~~ 167 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT--QPRRVAAMSVAQRVAEEMDVK 167 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE--ESCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec--CchHHHHHHHHHHHHHHhCCc
Confidence 468999999999999987777554332 2 3334332 345666666666666655543
No 478
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.24 E-value=0.0025 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+...|+|+|++||||||++..|.+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999753
No 479
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.24 E-value=0.0022 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
...|+++|++||||||++..+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999865
No 480
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.24 E-value=0.0021 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
...|+++|++||||||++..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999999884
No 481
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.23 E-value=0.0026 Score=47.00 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++|+||||++..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998764
No 482
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.21 E-value=0.0031 Score=52.40 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHh
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLK 127 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~ 127 (190)
+..+.|.||+|+||||++..++..+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998853
No 483
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.21 E-value=0.0027 Score=46.90 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998863
No 484
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.20 E-value=0.0033 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++||||||++..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998754
No 485
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.20 E-value=0.0029 Score=54.77 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~~ 125 (190)
.+..++++|+|||||||++..|.+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998753
No 486
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.20 E-value=0.0028 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy4311 102 NVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 102 ~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
..++++|++|+||||++..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999988753
No 487
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.19 E-value=0.0042 Score=62.22 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=37.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEeccCC
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D~~ 140 (190)
+++.++.|.||||+||||++..++......+++|.+++.+.-
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 568899999999999999999999999888888999887643
No 488
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.18 E-value=0.0021 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 98 KGKPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 98 ~~~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
.+++..++++|.+||||||++..|.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345679999999999999999998763
No 489
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.18 E-value=0.003 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++||||||++..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999863
No 490
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.17 E-value=0.0034 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
.+...++++|++||||||++..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999875
No 491
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.17 E-value=0.003 Score=49.05 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYL 126 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~ 126 (190)
..+|+|.|+.||||||+.+.||..+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999883
No 492
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.17 E-value=0.0029 Score=47.71 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+...++++|++||||||++..+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999887764
No 493
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.16 E-value=0.0029 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++|+||||++..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999998764
No 494
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.16 E-value=0.0032 Score=47.73 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
....|+++|++||||||++..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999998764
No 495
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0029 Score=47.74 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=21.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...|+++|++|+||||++..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 496
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.14 E-value=0.0071 Score=55.68 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEecc
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~D 138 (190)
...++|.||+|+|||++++.++..+ +..+..+++.
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s 522 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMS 522 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEech
Confidence 3479999999999999999999988 3444445443
No 497
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.14 E-value=0.0032 Score=47.87 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
+...|+++|++||||||++..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 498
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.13 E-value=0.0091 Score=46.55 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHHhcCCcEEEEec
Q psy4311 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA 137 (190)
Q Consensus 99 ~~~~vi~l~G~~G~GKTT~~~~la~~~~~~~~~v~li~~ 137 (190)
..+.+..+.||.||||||.+-.....+...+.+|.++..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 457899999999999998888888888778888998864
No 499
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.004 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy4311 100 KPNVIMFVGLQGSGKTTTCTKLAY 123 (190)
Q Consensus 100 ~~~vi~l~G~~G~GKTT~~~~la~ 123 (190)
+...++++|++||||||++..+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999874
No 500
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.11 E-value=0.0035 Score=48.00 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy4311 101 PNVIMFVGLQGSGKTTTCTKLAYH 124 (190)
Q Consensus 101 ~~vi~l~G~~G~GKTT~~~~la~~ 124 (190)
...++++|++||||||++..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
Done!