RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4311
(190 letters)
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 256 bits (655), Expect = 5e-84
Identities = 136/170 (80%), Positives = 153/170 (90%), Gaps = 1/170 (0%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVLADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
D +EMASGLNKR+MIQ +V+KEL+KLVDPGVKA P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
LAY+Y +K WK CL+CADTFRAGA+DQLKQNATKARIPFYGS +P+
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEM-DPV 169
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 212 bits (543), Expect = 5e-68
Identities = 65/168 (38%), Positives = 102/168 (60%)
Query: 3 LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDF 62
+ LG + AL L A ++++++ ++K+I AL++ADVN+KLV K+ + + +
Sbjct: 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 60
Query: 63 DEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
++ GL+K+ I VY+EL+KL+ K + K NVI+ VG+QGSGKTTT KLA
Sbjct: 61 EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120
Query: 123 YHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
+ K+ K L+ ADT+R AY+QLKQ A K +P YG ++P+
Sbjct: 121 RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPV 168
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 203 bits (518), Expect = 6e-66
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 1/167 (0%)
Query: 4 ADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFD 63
+ L + +R + ++ + +KE+ +L+ ADVN+KLV L +++ + +
Sbjct: 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNE 60
Query: 64 EMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAY 123
+ + + +R VY EL L + P VIM VG+QG+GKTTT KLAY
Sbjct: 61 KPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAY 120
Query: 124 HYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
Y KK +K LV AD +R A +QL+Q + +P Y G+++ +
Sbjct: 121 FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY-GEPGEKDVV 166
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 204 bits (522), Expect = 7e-65
Identities = 60/170 (35%), Positives = 110/170 (64%), Gaps = 2/170 (1%)
Query: 1 MVLADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVI 60
MVL +LG+ + + L+ ++ A+ ++E ++ ++++I AL++ADVN++LV +L +++
Sbjct: 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRA 60
Query: 61 DFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTK 120
++ +G++K+ I VY+EL K + K + K KP +++ VG+QGSGKTTT K
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAK 119
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
LA ++ K+ +K +VC+DT+R GAY QL+Q + I +G+ + K + I
Sbjct: 120 LARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEK-DAI 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 183 bits (466), Expect = 1e-56
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASG 68
I A+R + E+ ++ +K++ +L+ +DVN+KLV L +++ ++ ++ S
Sbjct: 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV 64
Query: 69 LNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK 128
L ++ S VY EL KL + + P +IM VG+QGSGKTTT KLAY Y K+
Sbjct: 65 LERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124
Query: 129 NWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
+K LV AD +R AYDQL Q + + YG + NPI
Sbjct: 125 GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQ-NPI 165
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 127 bits (321), Expect = 2e-36
Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEM 65
L ++ A+ L I EE L + L+EI AL++ADVN+++ + E VR+ ++
Sbjct: 5 LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQV 64
Query: 66 ASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
L +I ++VY+ L + + G +A P N+ VGLQGSGKTTT KLA +Y
Sbjct: 65 LESLTPAEVILATVYEALKEAL--GGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122
Query: 126 LKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
K + LV ADT R A +QL+ K +P G+ +P
Sbjct: 123 KGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGE-SPE 166
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 125 bits (316), Expect = 1e-34
Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEM 65
L ++ A+ L I EE L + L+EI AL++ADVN+++ + E VR+ ++
Sbjct: 5 LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV 64
Query: 66 ASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
L +I ++VY+ L + + G +A P N+ VGLQGSGKTTT KLA +Y
Sbjct: 65 LESLTPAEVILATVYEALKEAL--GGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122
Query: 126 LKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
K + LV ADT R A +QL+ K +P G+ +P
Sbjct: 123 KGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGE-SPE 166
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 117 bits (294), Expect = 2e-32
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 3 LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDF 62
+ + + + VL L++ L E + + + +
Sbjct: 13 IEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLR---- 68
Query: 63 DEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
+ +G + + + L ++ K +P I+ G G+GKTTT KLA
Sbjct: 69 FSVEAGGLTEENVVGKLQEILCDMLPSADKWQEP--IHSKYIVLFGSTGAGKTTTLAKLA 126
Query: 123 YHY-LKKNWKACLVCADTFRAGAYDQLKQNATKARIPFY 160
L+K+ K + DT+R A +QLK A + P
Sbjct: 127 AISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE 165
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 116 bits (293), Expect = 3e-31
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 10/170 (5%)
Query: 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEM 65
L +++ LR++S + E+ + L+E+ ALLEADV + +V++ V++ E+
Sbjct: 5 LTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEV 64
Query: 66 ASGLNKRRMIQSSVYKELIKL----VDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
L + V EL+ A QP P V++ GLQG+GKTT+ KL
Sbjct: 65 NKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQP----PAVVLMAGLQGAGKTTSVGKL 120
Query: 122 AYHYLKKNWKACL-VCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPI 170
+K+ K L V AD +R A QL+ A + + F+ S G+ P+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQ-KPV 169
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 108 bits (271), Expect = 8e-29
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 12 SALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNK 71
L I E+ ++ L E+ LLEADV +++V LRE ++Q + ++ G +K
Sbjct: 36 KGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDK 95
Query: 72 RRMIQSSVYKELIKLVDPG----VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK 127
++I+ +V + + ++++ + + KP VIMFVG GSGKTTT KLA
Sbjct: 96 GKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKN 155
Query: 128 KNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKG 165
+ + +DTFRAGA +QL+++A + + S G
Sbjct: 156 HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG 193
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 98.3 bits (245), Expect = 2e-24
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASG 68
+ S SL I+++ + +E+ LL ADV ++ +K+ N+ + ++
Sbjct: 209 NLGSGFISLFRGKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDA 264
Query: 69 LNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK 128
+++ +E+ +++ + + P VI+ VG+ G GKTTT KLA + ++
Sbjct: 265 EALYGLLK----EEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320
Query: 129 NWKACLVCADTFRAGAYDQLK 149
L DTFRA A +QL+
Sbjct: 321 GKSVMLAAGDTFRAAAVEQLQ 341
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 95.3 bits (238), Expect = 4e-24
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNI----KLVKKLRENVRQVID 61
+ I ++E L+++ L++ D+ + K+ +R+ ++
Sbjct: 18 FSKDIKKLS---KKYKQADDEFFEE-LEDV---LIQTDMGMKMVLKVSNLVRKKTKRDTS 70
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAH-QPQKGKPNVIMFVGLQGSGKTTTCTK 120
F+ + + + S+Y+ K ++ + N+ M VG+ G+GKTT+ K
Sbjct: 71 FENI------KDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAK 124
Query: 121 LAYHYLKKNWKACLVCADTFRAGAYDQLK 149
+A +Y + +K + ADTFRAGA QL+
Sbjct: 125 MANYYAELGYKVLIAAADTFRAGATQQLE 153
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 93.0 bits (232), Expect = 2e-23
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEM 65
L L + VL+ E+ ALL +D K+ ++ E +R+ I ++
Sbjct: 14 LAVIDELLL---FWNLAETDRVLD----ELEEALLVSDFGPKITVRIVERLREDIMSGKL 66
Query: 66 ASGLNKRRMIQSSVYKELIKLVDPGVKAH--QPQKGKPNVIMFVGLQGSGKTTTCTKLAY 123
SG + ++ + +++++ Q KP VIM VG+ G GKTT+ KLA+
Sbjct: 67 KSGSEIKDALK----ESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122
Query: 124 HYLKKNWKACLVCADTFRAGAYDQLK 149
+ K + DTFRA A DQL+
Sbjct: 123 RLKNEGTKVLMAAGDTFRAAASDQLE 148
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 93.9 bits (234), Expect = 3e-23
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEM 65
L L + VL+ E+ ALL +D K+ ++ E +R+ I ++
Sbjct: 71 LAVIDELLL---FWNLAETDRVLD----ELEEALLVSDFGPKITVRIVERLREDIMSGKL 123
Query: 66 ASGLNKRRMIQSSVYKELIKLVDPGVKAH--QPQKGKPNVIMFVGLQGSGKTTTCTKLAY 123
SG + ++ + +++++ Q KP VIM VG+ G GKTT+ KLA+
Sbjct: 124 KSGSEIKDALK----ESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 179
Query: 124 HYLKKNWKACLVCADTFRAGAYDQLK 149
+ K + DTFRA A DQL+
Sbjct: 180 RLKNEGTKVLMAAGDTFRAAASDQLE 205
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 89.5 bits (223), Expect = 5e-22
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICAALLEADVNI----KLVKKLRENVR-QVIDF- 62
K L EEVL E+ ALL ADV + ++++++R + R + +
Sbjct: 13 KTRERLLKAIPWGGNLEEVLE----ELEMALLAADVGLSATEEILQEVRASGRKDLKEAV 68
Query: 63 -DEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
+++ M++ + ++ + + +P + K V++ VG+ G GKTTT KL
Sbjct: 69 KEKLVG------MLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 122
Query: 122 AYHYLKKNWKACLVCADTFRAGAYDQLK 149
+Y K DTFRA QL
Sbjct: 123 GRYYQNLGKKVMFCAGDTFRAAGGTQLS 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 89.5 bits (223), Expect = 5e-22
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 10 ITSALRSLSNATVINEEVLNSMLKEICAALLEADVNI----KLVKKLRENVRQVIDFDEM 65
+ L +++E E+ L++ADV + ++++L E ++
Sbjct: 30 FFGRVVKLLKGKKLDDETRE----ELEELLIQADVGVETTEYILERLEEKDGDALES--- 82
Query: 66 ASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
+ + ++++++ K + P + P VIM VG+ G+GKTT+C KLA +
Sbjct: 83 -------------LKEIILEILNFDTKLNVPPE-PPFVIMVVGVNGTGKTTSCGKLAKMF 128
Query: 126 LKKNWKACLVCADTFRAGAYDQLK 149
+ + L ADTFRA A +QLK
Sbjct: 129 VDEGKSVVLAAADTFRAAAIEQLK 152
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 43.3 bits (102), Expect = 1e-05
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA--GAYDQLKQNATKARI 157
+I+ GL G GK+T LA K N ++ +D R + + + K
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKST 62
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 41.7 bits (98), Expect = 3e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143
+I+ +G GSGK+T A ++ KN + D +R
Sbjct: 2 KKIILTIGCPGSGKST----WAREFIAKNPGFYNINRDDYRQS 40
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 41.6 bits (97), Expect = 6e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143
+I+ +G GSGK+T A ++ KN + D +R
Sbjct: 2 KKIILTIGCPGSGKST----WAREFIAKNPGFYNINRDDYRQS 40
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 40.7 bits (95), Expect = 9e-05
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQL 148
P +I+ G +GKTT LA + L+ D F+ +D L
Sbjct: 3 QTPALIIVTGHPATGKTTLSQALA-----TGLRLPLLSKDAFKEVMFDGL 47
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 85 KLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
L ++ P++ ++ G GSGK+T LA + A +V D F
Sbjct: 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 39.6 bits (91), Expect = 2e-04
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 69 LNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK 128
+K + + + L K + + + P I F G QGSGK+ T ++ H ++K
Sbjct: 2 CDKSKTVLDYTIEFLDKYIP---EWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58
Query: 129 ---NWKACLVCADTFRAGAYDQLKQNATKARIPFY 160
D F DQLK N
Sbjct: 59 YGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 38.9 bits (90), Expect = 3e-04
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
N+++ G GSGK+T LA +D
Sbjct: 5 DDLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLW 46
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 37.6 bits (87), Expect = 0.001
Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 48/168 (28%)
Query: 50 KKLRENVRQVIDFDEMAS--GLNKRRMIQ--SSVYKELIKLVDPGVKAHQ---------- 95
+ LR + + +E+ GL ++ + VY L +L+ V A Q
Sbjct: 19 RALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFL 78
Query: 96 ------PQKGKPNVIMFVGLQGSGKTTTCTKLAY--HYLKKNWKACLVCADTF------- 140
P + P +I G GK+TT L + + LV D F
Sbjct: 79 GEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAEL 138
Query: 141 -------RAG---AYD---------QLKQNATKARIPFYGSSKGKRNP 169
R G +Y+ +K + A P Y P
Sbjct: 139 QRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIP 186
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 36.9 bits (85), Expect = 0.001
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
++ VG SGKTT T++ ++ + +V
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 36.6 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
NV VG + SGKTT K +++ W+ V
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 36.0 bits (82), Expect = 0.003
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
++ F G+GKTT KL + + L+
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 36.1 bits (83), Expect = 0.004
Identities = 27/164 (16%), Positives = 48/164 (29%), Gaps = 44/164 (26%)
Query: 50 KKLRENVRQVIDFDEMAS--GLNKRRMIQ--SSVYKELIKLVDPGVKA------------ 93
R++ + ++ G + ++ + +Y L +L+ V A
Sbjct: 25 GNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFL 84
Query: 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAY--HYLKKNWKACLVCADTF----------- 140
+P+ P +I G GK+TT L + ++ D F
Sbjct: 85 GKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQG 144
Query: 141 ---RAG---AYD---------QLKQNATKARIPFYGSSKGKRNP 169
R G +YD +K RIP Y
Sbjct: 145 LMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVR 188
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.004
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 46/163 (28%)
Query: 3 LADLGRK-ITSALRS-LSNATVINEEVLNS-----MLKEICAALLEADVNIKLVKKLREN 55
+ + K + +S LS + + ++ S + LL + V+K E
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEE 85
Query: 56 VRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQP------------------- 96
V + I++ + S + + S + + I+ D +Q
Sbjct: 86 VLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 97 QKGKPNVIMFV-GLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ +P + + G+ GSGKT W A VC
Sbjct: 145 LELRPAKNVLIDGVLGSGKT--------------WVALDVCLS 173
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 35.8 bits (82), Expect = 0.004
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 90 GVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
G H +++FVG GSGKTT + YL+ N+K V D
Sbjct: 3 GSHHHHHHGMASMIVVFVGTAGSGKTTLTGEF-GRYLEDNYKVAYVNLD 50
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 35.5 bits (82), Expect = 0.005
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAY 123
QK I+ G Q SGKT+ T L
Sbjct: 8 QKSYQPSIIIAGPQNSGKTSLLTLLTT 34
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 35.3 bits (81), Expect = 0.007
Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 46/165 (27%)
Query: 50 KKLRENVRQVIDFDEMAS--GLNKRRMIQ--SSVYKELIKLVDPGVKAHQ---------- 95
LR++V + DE+A G+N+ ++ + +Y L +L++ + ++
Sbjct: 13 AALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFL 72
Query: 96 --PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW---KACLVCADTF---------- 140
+ P +I G GK+TT L L + + L+ D F
Sbjct: 73 GTNGQRIPYIISIAGSVAVGKSTTARVLQAL-LSRWPEHRRVELITTDGFLHPNQVLKER 131
Query: 141 ----RAG---AYD---------QLKQNATKARIPFYGSSKGKRNP 169
+ G +YD LK P Y P
Sbjct: 132 GLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIP 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 34.5 bits (79), Expect = 0.011
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142
+ + G G GK+TTC +LA + + + D
Sbjct: 3 KLYIITGPAGVGKSTTCKRLA----AQLDNSAYIEGDIINH 39
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 34.3 bits (79), Expect = 0.011
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYH 124
+K ++FVGL SGKT +L
Sbjct: 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTG 30
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 34.6 bits (79), Expect = 0.014
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 72 RRMIQSSVYKELIKLVDPGVKAHQPQKGK-----PNVIMFVGLQGSGKTTTCTKLAYHYL 126
R + Q+ + K + + H Q+G P +I+ VGL GKT KL YL
Sbjct: 5 RELTQNPLKKIFMPYSNGRPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLT-RYL 63
Query: 127 KKNWKACLVCADTFRAGAY 145
N+ V F G Y
Sbjct: 64 --NF--IGVPTREFNVGQY 78
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 34.3 bits (78), Expect = 0.018
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKAR 156
K +I G G+G +T + ++ KA + D F +K +
Sbjct: 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRY 60
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 33.5 bits (76), Expect = 0.019
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLA------------YHYLKKNWK--ACLVCADT 139
++ +G+ GSGKTT +A +H + + D
Sbjct: 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDE 81
Query: 140 FRAGAYDQLKQNATKARIPFYG 161
R L +
Sbjct: 82 DRWPWLRSLAEWMDARADAGVS 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.020
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 34/100 (34%)
Query: 13 ALRSLSNATVINEEVLNSMLKEICAA---LLEADVNIKLVKKLRENVR--QVI------D 61
A+ A ++E L +++ + L+E VN NV Q +
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEI-VNY--------NVENQQYVAAGDLRA 1861
Query: 62 FDEMASGLN--KRRMIQSSVYKELIKL-----VDPGVKAH 94
D + + LN K + I ++I+L ++ V+ H
Sbjct: 1862 LDTVTNVLNFIKLQKI------DIIELQKSLSLEE-VEGH 1894
Score = 30.4 bits (68), Expect = 0.38
Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 74/200 (37%)
Query: 13 ALRSLSNATVINEEVLNSMLKEICAAL-LEADVNIKLVKKLRENVRQ--VIDFDEMASGL 69
++ +L+ +E + + + + L V I LV N + V+ SG
Sbjct: 340 SISNLT------QEQVQDYVNKTNSHLPAGKQVEISLV-----NGAKNLVV------SGP 382
Query: 70 NKRRMIQSSVY---KELIKL-VDPGV-KAHQP--QKGKPNVIM-FVGLQGSGKTTTCTKL 121
S+Y L K G+ ++ P ++ K F+
Sbjct: 383 ------PQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFL-------PVAS--- 425
Query: 122 AYH--YLKKNWKACLVCADTFRAGAYDQLKQ---------NATKARIPFYGSSKGK--RN 168
+H L A D + + NA +IP Y + G R
Sbjct: 426 PFHSHLL---------------VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 169 PIHNMGLSLIPT-YEKSFHW 187
++ ++ W
Sbjct: 471 LSGSISERIVDCIIRLPVKW 490
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 33.5 bits (77), Expect = 0.026
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
+ V+ GL SGKTT +L+ ++ C+ D
Sbjct: 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 33.3 bits (76), Expect = 0.027
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
QP G+P +I G SGK++ C K+
Sbjct: 14 HQQPNGGEPFLIGVSGGTASGKSSVCAKIV 43
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 33.1 bits (76), Expect = 0.031
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 11/42 (26%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
KG GSGKTT +A + + +V D
Sbjct: 9 PKG-----------GSGKTTAVINIATALSRSGYNIAVVDTD 39
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 33.3 bits (76), Expect = 0.033
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 39 LLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMI---QSS--VYKELIKLV---DPG 90
+ E D NI + R + I Q ++K+++ +
Sbjct: 73 IAEEDFNIDKSEFKRNCGLAYFTGTPGIELIKDEIAICKYQRVDVIFKQILGVYSDMAAN 132
Query: 91 VKAHQPQKGKPNVIMFV-GLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
V + K +V++F G G +T A + K + +
Sbjct: 133 VATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCG 184
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.7 bits (74), Expect = 0.041
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
+ P I+ +G+ GSGK++ +A
Sbjct: 10 EAAAVRRFPGSIVVMGVSGSGKSSVGEAIA 39
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 32.5 bits (75), Expect = 0.048
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125
K N+I VG GSGK T C K+ Y
Sbjct: 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 32.1 bits (74), Expect = 0.059
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125
K +I +G GSGK T C KL Y
Sbjct: 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.0 bits (73), Expect = 0.060
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAY 123
I+ G Q SGKT+ T L
Sbjct: 44 GGSYQPSIIIAGPQNSGKTSLLTLLTT 70
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 32.8 bits (74), Expect = 0.061
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 89 PGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131
P + ++M VGL GKT KL YL NW
Sbjct: 24 PRSCGPKLTNSPTVIVM-VGLPARGKTYISKKLT-RYL--NWI 62
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 32.1 bits (74), Expect = 0.062
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
+K KPNV+ +G GSGK T C + +
Sbjct: 2 EKSKPNVVFVLGGPGSGKGTQCANIVRDF 30
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 32.3 bits (74), Expect = 0.071
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 98 KGKPNVIMFVG-LQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ + N++M G SGKT + LA + + K + AD
Sbjct: 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.9 bits (72), Expect = 0.073
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYH 124
++ + +G+ GSGK+ +++A+
Sbjct: 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQ 31
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 32.3 bits (74), Expect = 0.080
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 98 KGKPNVIMFVG-LQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ + NV+M G G T C LA + N + L+ D
Sbjct: 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 31.8 bits (73), Expect = 0.11
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 98 KGKPNVIMFVG-LQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
I+ G+GK+T LA Y + +K +V D
Sbjct: 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 31.8 bits (72), Expect = 0.12
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+K IMF G G GKTT + +K K +V D
Sbjct: 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 31.6 bits (72), Expect = 0.12
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 47 KLVKKLRENVRQVID--------FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQK 98
KL R NV + FD+ +G + + + ++ + GV ++ +
Sbjct: 48 KLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYE--HRGVPKYRDRY 105
Query: 99 GKPNVIMFVGLQ--GSGKTTTCTKLA 122
+ VI F+ G KT + LA
Sbjct: 106 SEAYVI-FISNLKGGVSKTVSTVSLA 130
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 31.7 bits (71), Expect = 0.13
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA-YHYLKKNWKACLVCAD 138
K P ++ VG +GKT+ L Y ++ + D
Sbjct: 130 KIRMSNFEGP-RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 31.4 bits (71), Expect = 0.13
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 87 VDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
++P +++ Q+ I G G GKTTT LA K L+ D
Sbjct: 3 MEPTLQSILDQRSL-RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 31.0 bits (71), Expect = 0.14
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143
K VI GL GSGK+T L +K ++ D R G
Sbjct: 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG 67
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.4 bits (71), Expect = 0.17
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 51 KLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQ 110
+ ++ + M + SS L ++ G K ++I+ G
Sbjct: 238 TITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGF-----FKD--SIILATGAT 290
Query: 111 GSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNA 152
G+GKT ++ + +A L + R QL +NA
Sbjct: 291 GTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNA 328
Score = 28.0 bits (62), Expect = 2.1
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
+ G G+GKT + Y+ + + + +
Sbjct: 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV 72
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.0 bits (69), Expect = 0.18
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
L + + + + K +P I+ G G+GK TT ++ + N ++ D+F
Sbjct: 13 HALARNLRSLTRGKKSSK-QPIAILLGGQSGAGK-TTIHRIKQKEFQGNIV--IIDGDSF 68
Query: 141 RA 142
R+
Sbjct: 69 RS 70
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 30.6 bits (70), Expect = 0.20
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143
H + + GL G+GKTT L + + + D R G
Sbjct: 2 HM----RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 47
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 30.6 bits (70), Expect = 0.21
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125
+ +VI +G G+GK T C KL Y
Sbjct: 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 30.6 bits (70), Expect = 0.22
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143
K V+ GL GSGKTT T+LA K+ ++ ++ D R
Sbjct: 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT 55
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.5 bits (69), Expect = 0.24
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW------KACLVCADTF 140
Q +P +I G SGK+T C K+ L +N K ++ D F
Sbjct: 21 QSMRPFLIGVSGGTASGKSTVCEKIM-ELLGQNEVEQRQRKVVILSQDRF 69
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 30.6 bits (69), Expect = 0.26
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ KGK + G G GKTT A + K ++ D
Sbjct: 8 KFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.9 bits (67), Expect = 0.31
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLA 122
+ +I G G GKT T L
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTLH 26
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.1 bits (67), Expect = 0.31
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 102 NVIMFVGLQGSGKTTTCTKLA 122
+ + G+ G GK+T K+
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVK 22
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.0 bits (67), Expect = 0.34
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
V++ G+ G G TT+ + K+ +V +
Sbjct: 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.8 bits (67), Expect = 0.36
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
P+ K +I G+ SGKTT L
Sbjct: 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQ 42
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 29.6 bits (66), Expect = 0.38
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125
PN I+ G G GKTT +LA
Sbjct: 11 LPN-ILLTGTPGVGKTTLGKELASKS 35
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 29.4 bits (67), Expect = 0.50
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125
KP V+ +G G+GK T C ++ Y
Sbjct: 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.3 bits (65), Expect = 0.54
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLA 122
+I+ G +GK+ L
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQ 24
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 29.6 bits (66), Expect = 0.67
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 24/158 (15%)
Query: 3 LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDF 62
L +G LR T+ E + + E+ A ++ K+ + R+ +
Sbjct: 40 LPGVGPATAEKLREAGYDTL--EAIAVASPIELKE---VAGISEGTALKIIQAARKAANL 94
Query: 63 DEMASG---LNKRRMIQ--SSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTT 117
L KR I S+ K L KL+ G++ + G GSGKT
Sbjct: 95 GTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQA-------ITEVFGEFGSGKTQL 147
Query: 118 CTKLAYHYLKKNW------KACLVCA-DTFRAGAYDQL 148
LA + +TFR ++
Sbjct: 148 AHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI 185
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 29.3 bits (66), Expect = 0.71
Identities = 9/29 (31%), Positives = 9/29 (31%)
Query: 111 GSGKTTTCTKLAYHYLKKNWKACLVCADT 139
G GKTT L K V D
Sbjct: 10 GVGKTTVAAGLIKIMASDYDKIYAVDGDP 38
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 29.4 bits (66), Expect = 0.74
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 18/102 (17%)
Query: 50 KKLRENVRQVIDFDEMASGL--NKRRMIQSSVYKELIKLVDPGVKAHQ-----------P 96
+ D +A+ + R + I LV+ H+ P
Sbjct: 20 GSMMAASHDDDTVDGLATAVRGGDRAAL-----PRAITLVESTRPDHREQAQQLLLRLLP 74
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
G + + G+ G GK+T L H +++ + ++ D
Sbjct: 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 28.7 bits (64), Expect = 0.76
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142
VI+ G+ GSGK+ L ++ K +V +D R
Sbjct: 2 KVILITGMPGSGKSEFAKLLK----ERGAK-VIVMSDVVRK 37
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 28.9 bits (64), Expect = 0.79
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
+ +P ++ G GSGKTT +
Sbjct: 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYK 44
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 28.9 bits (65), Expect = 0.87
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 12/42 (28%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
KG G GKTTT L+ YL + L+ D
Sbjct: 8 FKG-----------GVGKTTTAVHLSA-YLALQGETLLIDGD 37
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.2 bits (64), Expect = 0.88
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 79 VYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ ++ + G KA + P + G GSGKT+ + + ++ D
Sbjct: 15 RLNDNLEELIQGKKAVE----SPTAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDND 67
Query: 139 TFRA 142
TF+
Sbjct: 68 TFKQ 71
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.5 bits (63), Expect = 0.93
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
I+ G G+GKT+ +A
Sbjct: 13 ILITGTPGTGKTSMAEMIA 31
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 28.7 bits (65), Expect = 0.94
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
I F G +GSGKTT ++ H L K++ +
Sbjct: 5 ITFEGPEGSGKTTVINEVY-HRLVKDYDVIM 34
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 28.8 bits (65), Expect = 1.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
I F G +GSGKTT ++ H L K++ +
Sbjct: 29 ITFEGPEGSGKTTVINEVY-HRLVKDYDVIM 58
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 1.1
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133
+ G G GKTT K +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 28.8 bits (64), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 105 MFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139
+ G G+GKT T + YH ++ LVCA +
Sbjct: 375 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 28.5 bits (64), Expect = 1.2
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 76 QSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL---KKNWKA 132
+++L+ G H ++ L G G L+ + L + K+
Sbjct: 7 LRPDFEKLVASYQAGRGHH--------ALLIQALPGMGDDALIYALSRYLLCQQPQGHKS 58
Query: 133 CLVCAD 138
C C
Sbjct: 59 CGHCRG 64
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 28.4 bits (64), Expect = 1.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKN 129
I+F GL SGKTT C + + N
Sbjct: 7 IVFEGLDKSGKTTQCMNIM-ESIPAN 31
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKA 132
P+ ++F G G GKTT LA +NW+
Sbjct: 47 PH-LLFAGPPGVGKTTAALALARELFGENWRH 77
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 28.6 bits (64), Expect = 1.3
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
I G G GKTTT LA K L+ D
Sbjct: 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 28.3 bits (63), Expect = 1.3
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
++ F+G G +T A + + L
Sbjct: 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLA 39
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 97 QKGKPNVIMFVGLQGSGKTT 116
Q+G I GL SGK+T
Sbjct: 23 QRGL--TIWLTGLSASGKST 40
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLA 122
KP VI G SGKTT LA
Sbjct: 3 APKPFVIGIAGGTASGKTTLAQALA 27
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 28.4 bits (64), Expect = 1.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKN 129
I+ GL +GKTT C L L+ N
Sbjct: 8 ILIEGLDRTGKTTQCNILY-KKLQPN 32
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLA 122
P + VGL GSGK+T +LA
Sbjct: 2 APKAV-LVGLPGSGKSTIGRRLA 23
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.9 bits (63), Expect = 1.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN 129
+KGK I+F GL SGK+T L YLK N
Sbjct: 6 DKKKGK--FIVFEGLDRSGKSTQSKLLV-EYLKNN 37
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.4 bits (63), Expect = 1.4
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFY 160
N + G+GK+ T L + + ++ + Y ++ +
Sbjct: 36 SNWTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE----REYKEMCR-KLGGVWINC 89
Query: 161 GSSKGKRNPIH 171
+GK NP+
Sbjct: 90 TGGEGKINPLQ 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 28.5 bits (63), Expect = 1.5
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142
K K + + G G+G TT + + ++ A T A
Sbjct: 42 KEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAA 86
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAG 143
+ + GL G+GKTT L + + + D R G
Sbjct: 45 GTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 94
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 27.9 bits (63), Expect = 1.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
++F+GL +GKTT L
Sbjct: 26 LLFLGLDNAGKTTLLHMLK 44
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 28.4 bits (63), Expect = 1.6
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
+ + G G+GKT T + YH K + LVCA + A D L +
Sbjct: 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN--VAVDHLAAKLRDLGLKVVRL 434
Query: 163 SKGKRNPIHNMGLSL 177
+ R + + +L
Sbjct: 435 TAKSREDVESSVSNL 449
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 28.1 bits (63), Expect = 1.7
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 5 DLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDE 64
D G K+T+ L+ + EE L ++K+I L + +++ +R+ +E
Sbjct: 392 DTGEKVTADLQGI-------EETLRELMKDILENLRT-----RAWERMESEIREAETLEE 439
Query: 65 MASGLNKRRMI 75
+ ++++R I
Sbjct: 440 ASRIVDEKRGI 450
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLA 122
K N+ VG G+GK+T +LA
Sbjct: 2 AEKRNIF-LVGPMGAGKSTIGRQLA 25
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 28.4 bits (63), Expect = 1.8
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
P + F G G GKT+ A ++ + LV D
Sbjct: 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 28.1 bits (63), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131
P+++ F G G+GKT T LA +NW+
Sbjct: 39 PHLL-FSGPPGTGKTATAIALARDLFGENWR 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.9
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 9/24 (37%)
Query: 8 RKITSALR--------SLS-NATV 22
+K+ ++L+ +L+ AT+
Sbjct: 23 KKLQASLKLYADDSAPALAIKATM 46
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 27.6 bits (62), Expect = 1.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
++F+GL +GKTT L
Sbjct: 28 LVFLGLDNAGKTTLLHMLK 46
>2x3j_A ACSD; alcaligin biosynthesis, ligase, ALCC, adenylation, sideropho
iron acquisition; HET: ATP X3J; 2.00A {Erwinia
chrysanthemi} PDB: 2w03_A* 2w04_A* 2w02_A* 2x3k_A*
3ffe_A
Length = 620
Score = 28.1 bits (62), Expect = 1.9
Identities = 3/42 (7%), Positives = 18/42 (42%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVK 50
+IT+ +R + + + +++ + +++ + +
Sbjct: 299 RITNCVRKNAWYELESTVLIDRLFRQLLDQHADTLGGLVAAA 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.9 bits (62), Expect = 2.0
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
++ G G+GKTT + Y ++ + +
Sbjct: 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGV 63
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 27.6 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133
P+ ++F G G+GKT T LA +NW+
Sbjct: 39 PH-LLFSGPPGTGKTATAIALARDLFGENWRDN 70
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
+ VGLQ SGKTT +A
Sbjct: 25 LTLVGLQYSGKTTFVNVIA 43
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.5 bits (62), Expect = 2.2
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLA 122
+K N+ +GL G+GKT+ ++LA
Sbjct: 2 KKNLTNIY-LIGLMGAGKTSVGSQLA 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 27.9 bits (62), Expect = 2.2
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNA 152
++ G G+GK T C L + F + +L+ N
Sbjct: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 27.9 bits (61), Expect = 2.3
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
+ + I G +GK+T L
Sbjct: 18 SSEGTRIKKISIEGNIAAGKSTFVNILKQLC 48
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 27.8 bits (62), Expect = 2.3
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 90 GVKAHQPQKGKPNVIMFVGLQ--GSGKTTTCTKLAYHYL 126
+ ++ P VI FV G KT + LA H L
Sbjct: 100 KIPKYRDIHKSPYVI-FVVNLKGGVSKTVSTVTLA-HAL 136
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.8 bits (61), Expect = 2.3
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
K I G G GKTT + +H+ + L+
Sbjct: 3 TDKTDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI 46
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.8 bits (61), Expect = 2.3
Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 17/134 (12%)
Query: 37 AALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQP 96
+ + + + + ++ ++ S + K ++ + +K +P
Sbjct: 99 GVVETHARKYHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAK--LRTLRRLLKDGEP 156
Query: 97 QKGKPNVIMFVGLQGSGKTTT---------------CTKLAYHYLKKNWKACLVCADTFR 141
V++ G+ G GKT + A ++ + ++ A
Sbjct: 157 HVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDN 216
Query: 142 AGAYDQLKQNATKA 155
D N K
Sbjct: 217 VRTVDSFLMNYGKG 230
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 27.2 bits (61), Expect = 2.4
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLA 122
+ M VG +G G TT +LA
Sbjct: 2 TEPIFM-VGARGCGMTTVGRELA 23
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase;
2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Length = 524
Score = 27.7 bits (62), Expect = 2.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 102 NVIMFVGLQGSGKTT 116
+V +F GL G+GKTT
Sbjct: 214 DVTVFFGLSGTGKTT 228
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
I+ +GL G+GKTT +L
Sbjct: 10 ILILGLDGAGKTTILYRLQ 28
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 27.3 bits (60), Expect = 2.5
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 95 QPQKGKP-NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133
P G P V++F G + SGK L
Sbjct: 4 APLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVL 43
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.7 bits (61), Expect = 2.7
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 80 YKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136
+++ ++ P + KPN I GL G+GKT + KK
Sbjct: 29 IRKIASILAPLYRE-----EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.2 bits (61), Expect = 2.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
++ +GL SGKTT KL
Sbjct: 24 VLCLGLDNSGKTTIINKLK 42
>2g0t_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Length = 350
Score = 27.4 bits (60), Expect = 2.8
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 88 DPGVKAHQPQKGKPNVIMFVGL-QGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ V + K V+ G GK TT +L L+K KA +
Sbjct: 156 ELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG 207
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 27.3 bits (61), Expect = 2.8
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 105 MFV---GLQGSGKTTTCTKLAYHYLKKNWKACLV 135
M + G+ G+GK T KL+ + +
Sbjct: 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 27.4 bits (60), Expect = 3.1
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYH 124
V V G+GK+ +LA
Sbjct: 32 VGALVSPGGAGKSMLALQLAAQ 53
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.3 bits (60), Expect = 3.1
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
P K ++ +G GSGK++ + + +Y
Sbjct: 1 PLGSK---LLLMGRSGSGKSSMRSIIFSNY 27
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 26.8 bits (60), Expect = 3.1
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
++ +GL +GKT+ +L
Sbjct: 25 VLMLGLDNAGKTSILYRLH 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 3.1
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 89 PGVKAHQPQKGKPNV--IMFVGLQGSGKTTTCTKLAYHY 125
H + G M G G GKTT +A
Sbjct: 63 KNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.5 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 97 QKGKPNVIMFVGLQGSGKTT 116
+KG +M VG G GK+T
Sbjct: 14 KKGFEFTLMVVGESGLGKST 33
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 27.2 bits (60), Expect = 3.3
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 89 PGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
V + + K +++ +G G+GK+ LA H+
Sbjct: 28 TNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHF 64
>3to3_A Petrobactin biosynthesis protein ASBB; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
alpha-beta structure; HET: MSE ATP; 2.38A {Bacillus
anthracis}
Length = 619
Score = 27.3 bits (60), Expect = 3.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICA 37
TS LR+L +V + +++ L + +
Sbjct: 305 LNTSTLRTLKPYSVASAPAISNWLSNVVS 333
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, T thermophilus; 2.00A {Thermus
thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A*
2pc9_A*
Length = 529
Score = 27.3 bits (61), Expect = 3.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 102 NVIMFVGLQGSGKTT 116
+V +F GL G+GKTT
Sbjct: 226 DVAVFFGLSGTGKTT 240
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, RS, translation, ATP-binding,
nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia
atcc 50803}
Length = 518
Score = 27.4 bits (61), Expect = 3.5
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 25 EEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRR 73
+ V+ L A L E K V FDE+ + + +
Sbjct: 414 KNVIKDELDAYKARLKE-----KAFAFHNSMVTNCKSFDEIVACIENKG 457
>2x0q_A ALCC, alcaligin biosynthesis protein; adenylation, siderophores,
iron ACQU biosynthetic protein; HET: ATP; 1.96A
{Bordetella bronchiseptica} PDB: 2x0o_A* 2x0p_A*
Length = 618
Score = 27.3 bits (60), Expect = 3.7
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICAA 38
+R LS + +N + ++ +A
Sbjct: 306 LNMGFMRGLSPYYMAGTPAINEYIHDLISA 335
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 27.1 bits (60), Expect = 3.7
Identities = 9/72 (12%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 67 SGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126
S ++++ + + ++++ ++++ K + G G+GK+T
Sbjct: 41 STHSRKKELAQVLLQKVLLYHREQEQSNKG-KPLAFRVGLSGPPGAGKSTFIEYFGKMLT 99
Query: 127 KKNWKACLVCAD 138
++ K ++ D
Sbjct: 100 ERGHKLSVLAVD 111
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 26.9 bits (60), Expect = 3.9
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
+KG +I F G+ GSGK++ T L +++ L
Sbjct: 2 KKGV--LIAFEGIDGSGKSSQATLLK-DWIELKRDVYL 36
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 26.8 bits (60), Expect = 3.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
I+ G+ +GK+T KL +A L+
Sbjct: 12 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 26.8 bits (60), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 104 IMFVGLQGSGKTT 116
I+ VGL +GKTT
Sbjct: 3 ILMVGLDAAGKTT 15
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 26.9 bits (59), Expect = 4.0
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
I+ +GL+ SGK++ + +
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKM 44
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 26.8 bits (60), Expect = 4.1
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
I+ GL+G+GK+T + +
Sbjct: 30 IVIEGLEGAGKSTAIQVVVETLQQNGIDHITR 61
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 26.8 bits (60), Expect = 4.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWK 131
I F G+ GSGKTT LA YL + +
Sbjct: 24 ITFEGIDGSGKTTQSHLLA-EYLSEIYG 50
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.8 bits (60), Expect = 4.2
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
P +M G SGK T C + Y
Sbjct: 2 LADPLKVMISGAPASGKGTQCELIKTKY 29
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 26.6 bits (60), Expect = 4.3
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 18/48 (37%)
Query: 111 GSGKTTTCTKLA----YHYLKKNWKACLVCADT---FRAGAYDQLKQN 151
SGK++ ++A YL + +RA A+ L+
Sbjct: 12 ASGKSSVARRVAAALGVPYL-----------SSGLLYRAAAFLALRAG 48
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 26.7 bits (60), Expect = 4.3
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKN 129
I F G+ GSGK+T LA YL+K
Sbjct: 3 ITFEGIDGSGKSTQIQLLA-QYLEKR 27
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 27.1 bits (60), Expect = 4.4
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 91 VKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ A P G + G G+GK+T +++ K ++ D
Sbjct: 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 26.7 bits (59), Expect = 4.8
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 18/95 (18%)
Query: 57 RQVIDFDEMASGL--NKRRMIQSSVYKELIKLVDPGVKAHQ-----------PQKGKPNV 103
+ D D + L R + I L + H+ PQ G+
Sbjct: 3 ATLPDMDTLRERLLAGDRAAL-----ARAITLAESRRADHRAAVRDLIDAVLPQTGRAIR 57
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ G+ G GK+TT L K ++ D
Sbjct: 58 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 26.3 bits (59), Expect = 4.9
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKN 129
I F G+ GSGKTT KL YLK+
Sbjct: 3 IAFEGIDGSGKTTQAKKLY-EYLKQK 27
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 26.6 bits (58), Expect = 5.0
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 80 YKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
++ + VK +F+GL G+GKT +
Sbjct: 29 LRDAAIAIRYFVKN-----EVKFSNLFLGLTGTGKTFVSKYIF 66
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 26.8 bits (59), Expect = 5.0
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 87 VDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYH 124
++P +++ I G G GKTTT + +A
Sbjct: 5 LEPTLESIVQHDS-LKWIFVGGKGGVGKTTTSSSVAVQ 41
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 26.6 bits (58), Expect = 5.1
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125
P + G GK+T L Y
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 26.3 bits (59), Expect = 5.2
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 18/48 (37%)
Query: 111 GSGKTTTCTKLA----YHYLKKNWKACLVCADT---FRAGAYDQLKQN 151
G+GK T C +A +H L D+ +R A L +
Sbjct: 15 GAGKGTLCKAMAEALQWHLL-----------DSGAIYRVLALAALHHH 51
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 104 IMFVGLQGSGKTTTCTKL 121
I+ VGL +GKTT KL
Sbjct: 32 ILMVGLDAAGKTTILYKL 49
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 26.0 bits (58), Expect = 5.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
H +++ +G GSGK++ +L
Sbjct: 1 HHHHHHMQHLV-LIGFMGSGKSSLAQELG 28
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 26.1 bits (58), Expect = 6.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
I+ +GL G+GKTT +L
Sbjct: 21 ILILGLDGAGKTTILYRLQ 39
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 26.4 bits (59), Expect = 6.2
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
I+ GL+G+GKTT + + + +
Sbjct: 6 IVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 26.2 bits (58), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131
P+++ F G G+GKT+T LA KN+
Sbjct: 47 PHLL-FYGPPGTGKTSTIVALAREIYGKNYS 76
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 26.4 bits (58), Expect = 6.5
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 12/71 (16%)
Query: 52 LRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQG 111
L + + M L RR V E+I+ K ++ G G
Sbjct: 33 LDDALEPRQASQGMVGQLAARRAAG--VVLEMIREG----------KIAGRAVLIAGQPG 80
Query: 112 SGKTTTCTKLA 122
+GKT +A
Sbjct: 81 TGKTAIAMGMA 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 26.1 bits (58), Expect = 6.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 104 IMFVGLQGSGKTTTCTKL 121
++ VGL +GKTT +
Sbjct: 24 VIIVGLDNAGKTTILYQF 41
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 26.2 bits (59), Expect = 6.6
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 18/48 (37%)
Query: 111 GSGKTTTCTKLA----YHYLKKNWKACLVCADT---FRAGAYDQLKQN 151
+GK+T ++A Y+ DT +RA Y LK N
Sbjct: 13 AAGKSTIAKRVASELSMIYV-----------DTGAMYRALTYKYLKLN 49
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.4 bits (58), Expect = 6.6
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139
++ G G+GK+ +LAY L + + V D
Sbjct: 56 LLVNGATGTGKSVLLRELAYTGLLRGDRM--VIVDP 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 26.1 bits (58), Expect = 6.6
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 43 DVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYK-ELIKLVDPGVKAHQPQKGKP 101
+++ L +L + Q D + L +R ++ ++ E+++ + +
Sbjct: 31 QISMDLKNELMYQLEQDHDLQAI---LQERELLPVKKFESEILEAI----SQNS------ 77
Query: 102 NVIMFVGLQGSGKTT 116
V++ G G GKTT
Sbjct: 78 -VVIIRGATGCGKTT 91
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 26.3 bits (58), Expect = 6.7
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 50 KKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGL 109
+ + + E+ + K ++ + + L L V A + +P ++ G
Sbjct: 145 TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQ-GP 203
Query: 110 QGSGKTTTCTKLAYHYLKKNWKACLVCADT 139
G+GKT T + YH ++ LVCA +
Sbjct: 204 PGTGKTVTSATIVYHLARQGNGPVLVCAPS 233
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 25.9 bits (57), Expect = 6.8
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 111 GSGKTTTCTKLAYHYLKKNWKA-----CLVCADT 139
GSGKT +A +L K KA +V +
Sbjct: 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 26.0 bits (56), Expect = 6.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHY 125
+I G++ SGK TT + +Y
Sbjct: 2 KLIFLSGVKRSGKDTTADFIMSNY 25
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 26.6 bits (58), Expect = 7.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 111 GSGKTTTCTKLAYHYLKKN 129
GSGKT L++
Sbjct: 11 GSGKTKLIINSIQDELRRA 29
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription
regulator; 1.80A {Streptococcus mutans}
Length = 204
Score = 26.0 bits (57), Expect = 7.1
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 76 QSSVYKELIKLVDPG--VKAHQPQKGKPN 102
+Y L KL G K Q G+PN
Sbjct: 71 YGMIYPTLRKLEKDGKITKEVVIQDGRPN 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 26.0 bits (58), Expect = 7.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 104 IMFVGLQGSGKTTTCTKL 121
I+ +GL +GKTT +L
Sbjct: 19 ILLLGLDNAGKTTLLKQL 36
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 26.1 bits (58), Expect = 7.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
K + +G GSGK T C ++A ++
Sbjct: 23 MASKLLRAVILGPPGSGKGTVCQRIAQNF 51
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 26.0 bits (58), Expect = 7.1
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 11/31 (35%)
Query: 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAY 123
+ KG G GK+ T AY
Sbjct: 40 LNNYFKG-----------GVGKSKLSTMFAY 59
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 25.9 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 18/48 (37%)
Query: 111 GSGKTTTCTKLA----YHYLKKNWKACLVCADT---FRAGAYDQLKQN 151
SGK+T +A + YL DT +RA Y LK
Sbjct: 26 SSGKSTVAKIIAKDFGFTYL-----------DTGAMYRAATYMALKNQ 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 26.3 bits (58), Expect = 7.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 99 GKPNVIMFVGLQGSGKTTTCTKLAYH 124
G+P + G+ G GK+ +
Sbjct: 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 25.7 bits (56), Expect = 7.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
I+ G G GKTT K+
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 26.0 bits (58), Expect = 7.4
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
+ +G GSGK T +++ H+
Sbjct: 10 AVIMGAPGSGKGTVSSRITTHF 31
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 26.1 bits (58), Expect = 7.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 104 IMFVGLQGSGKTT 116
++ VGL +GKTT
Sbjct: 19 VIIVGLDNAGKTT 31
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 26.3 bits (57), Expect = 7.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 97 QKGKPNVIMFVGLQGSGKTT 116
G +M VG G GK+T
Sbjct: 4 GSGFEFTLMVVGESGLGKST 23
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 25.7 bits (57), Expect = 7.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 104 IMFVGLQGSGKTTTCTKL 121
++ +GL +GKTT K
Sbjct: 21 LLMLGLDNAGKTTILKKF 38
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 26.2 bits (57), Expect = 7.6
Identities = 3/14 (21%), Positives = 11/14 (78%)
Query: 103 VIMFVGLQGSGKTT 116
+++ +G++ GK++
Sbjct: 1 MVLLMGVRRCGKSS 14
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 26.0 bits (56), Expect = 7.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
P V++ VG G+GK+T + H + + V DT
Sbjct: 257 NPEVVVAVGFPGAGKSTFIQE---HLVSAGYV--HVNRDTLG 293
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 25.9 bits (58), Expect = 7.9
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTC 118
Q +I F G G GK+T
Sbjct: 26 QPNS--IIAFAGPSGGGKSTIF 45
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 25.9 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLA 122
G+ + VG+ GSGKTT +A
Sbjct: 47 NGRS--MYLVGMMGSGKTTVGKIMA 69
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 25.9 bits (58), Expect = 8.1
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 18/48 (37%)
Query: 111 GSGKTTTCTKLA----YHYLKKNWKACLVCADT---FRAGAYDQLKQN 151
G+GK++ LA YL DT +R L+
Sbjct: 19 GTGKSSVSRGLARALGARYL-----------DTGAMYRIATLAVLRAG 55
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 25.9 bits (57), Expect = 8.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 104 IMFVGLQGSGKTT 116
I++ G SGKTT
Sbjct: 17 IVYYGPGLSGKTT 29
>2jek_A RV1873; structural genomics, unknown function, hypothetical
protein, right-handed superhelix, TB structural
genomics consortium; 1.38A {Mycobacterium tuberculosis}
SCOP: a.255.1.1
Length = 145
Score = 25.6 bits (56), Expect = 8.1
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 3 LADLGRKITS---ALRSLSNATV-INEEVLNSMLKEICAALLEAD 43
L LG + + SL A + ++L L E + +
Sbjct: 45 LRGLGSSPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQ 89
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline
+ tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A
{Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
PDB: 1h4q_A* 1h4t_A 1h4s_A
Length = 477
Score = 26.2 bits (58), Expect = 8.3
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 25 EEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNK 71
E L L L + + ++ R+V ++ + +
Sbjct: 378 PEALPGKLDAFHEELYR-----RALAFREDHTRKVDTYEAFKEAVQE 419
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 25.8 bits (57), Expect = 8.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 102 NVIMFVGLQGSGKTTTCTKLA 122
+I+ G K+T KL+
Sbjct: 2 TLIILEGPDCCFKSTVAAKLS 22
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 25.6 bits (57), Expect = 9.1
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKN 129
+ G +G+GK+T LA L++
Sbjct: 9 VTLEGPEGAGKSTNRDYLA-ERLRER 33
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 25.9 bits (56), Expect = 9.2
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 80 YKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
++L L+ ++ +G G+GKT T KL
Sbjct: 26 LQQLDILLGNWLRNPG---HHYPRATLLGRPGTGKTVTLRKL 64
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence
motif, metal-binding site, polymorphism, metal binding
protein; 2.50A {Homo sapiens}
Length = 287
Score = 25.9 bits (56), Expect = 9.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 8 RKITSALRSLSNATVINEEVLNSMLKEICA 37
R+ S+ R + N L E+C
Sbjct: 17 RQGASSERKRARIPSGKAGAANGFLMEVCV 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 26.1 bits (58), Expect = 9.7
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKN 129
++G V+ VG G+GK+T K+ L N
Sbjct: 44 VKEGM--VVGIVGPNGTGKSTA-VKILAGQLIPN 74
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.0 bits (57), Expect = 9.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
++ VG G GKT T +
Sbjct: 926 LILVGKAGCGKTATWKTVI 944
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.387
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,859,017
Number of extensions: 166291
Number of successful extensions: 748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 221
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)