RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4311
(190 letters)
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa
protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 108 bits (271), Expect = 1e-31
Identities = 69/96 (71%), Positives = 80/96 (83%), Gaps = 4/96 (4%)
Query: 4 ADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFD 63
ADLGRKITSALRSLSNAT+INEEVLN+MLKE+C ALLEADVNIKLVK+LRENV+ ID +
Sbjct: 8 ADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLE 67
Query: 64 EMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKG 99
EMASGLNKR+MIQ +V+KEL+K+ P G
Sbjct: 68 EMASGLNKRKMIQHAVFKELVKVKVYS----GPSSG 99
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 90.2 bits (223), Expect = 2e-23
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKA 155
P + K V++ VG+ G GKTTT KL +Y K DTFRA QL + +
Sbjct: 1 PVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRL 60
Query: 156 RIPFYGSSKG 165
IP +G
Sbjct: 61 SIPVIQGPEG 70
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 85.5 bits (211), Expect = 1e-21
Identities = 31/82 (37%), Positives = 39/82 (47%)
Query: 92 KAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQN 151
+A P N+ VGLQGSGKTTT KLA +Y K + LV ADT R A +QL+
Sbjct: 1 EARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL 60
Query: 152 ATKARIPFYGSSKGKRNPIHNM 173
K +P G+
Sbjct: 61 GEKVGVPVLEVMDGESPESIRR 82
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein
Ffh {Thermus aquaticus [TaxId: 271]}
Length = 88
Score = 82.1 bits (203), Expect = 1e-21
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 6 LGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEM 65
L ++ A+ L I EE L + L+EI AL++ADVN+++ + E VR+ ++
Sbjct: 5 LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQV 64
Query: 66 ASGLNKRRMIQSSVYKELIKL 86
L +I ++VY+ L +
Sbjct: 65 LESLTPAEVILATVYEALKEA 85
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein
Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Length = 84
Score = 80.2 bits (198), Expect = 8e-21
Identities = 18/79 (22%), Positives = 38/79 (48%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASG 68
+ +R + ++ + +KE+ +L+ ADVN+KLV L +++ + ++ +
Sbjct: 4 NLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTY 63
Query: 69 LNKRRMIQSSVYKELIKLV 87
+ +R VY EL L
Sbjct: 64 IERREWFIKIVYDELSNLF 82
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 80.5 bits (198), Expect = 1e-19
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF 159
P VIM VG+ G+GKTT+C KLA ++ + L ADTFRA A +QLK +
Sbjct: 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV 69
Query: 160 YGSSKGK 166
S+G
Sbjct: 70 ISHSEGA 76
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 77.5 bits (190), Expect = 2e-18
Identities = 33/76 (43%), Positives = 41/76 (53%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARI 157
P VIM VG+QG+GK TT KLAY Y KK +K LV AD +R A +QL+Q + +
Sbjct: 9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV 68
Query: 158 PFYGSSKGKRNPIHNM 173
P YG K
Sbjct: 69 PVYGEPGEKDVVGIAK 84
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 75.1 bits (184), Expect = 1e-17
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKAR 156
+ P VI+ VG+ G GKTTT KLA + ++ L DTFRA A +QL+ +
Sbjct: 5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 64
Query: 157 IPFYGSSKGKR 167
IP G
Sbjct: 65 IPVIAQHTGAD 75
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 57.3 bits (137), Expect = 4e-11
Identities = 10/66 (15%), Positives = 23/66 (34%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
V++ G+ G G TT+ + K+ +V + + + + ++
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
Query: 163 SKGKRN 168
KR
Sbjct: 63 ETQKRI 68
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 55.4 bits (132), Expect = 2e-10
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCA-DTFRAGAYDQLKQNATKARIPFY 160
+ + G+ G GK+T K+ + ++ D A A
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLS 61
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 51.5 bits (122), Expect = 5e-09
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQ 150
P +I+ VGL GKT KL + +R K
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKS 51
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 41.5 bits (96), Expect = 1e-05
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
+ G G GKTT K + + R
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVR 41
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 40.7 bits (94), Expect = 3e-05
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLK 149
++ F G+GKTT KL + + L+ K
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGK 50
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 40.0 bits (92), Expect = 5e-05
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQN 151
+ + GL G+GKTT L + + + D R G L +
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFS 69
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 39.6 bits (91), Expect = 7e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
+K KPNV+ +G GSGK T C + +
Sbjct: 2 EKSKPNVVFVLGGPGSGKGTQCANIVRDF 30
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 39.7 bits (92), Expect = 8e-05
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 50 KKLRENVRQVIDFDEMAS--GLNKRRMIQ--SSVYKELIKLVDPGVKAHQ---------- 95
LR++V + DE+A G+N+ ++ + +Y L +L++ + ++
Sbjct: 13 AALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFL 72
Query: 96 --PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLK--KNWKACLVCADTF 140
+ P +I G GK+TT L + ++ + L+ D F
Sbjct: 73 GTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 39.8 bits (92), Expect = 9e-05
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 78 SVYKELIKLVDPGVKAH-QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKK---NWKAC 133
+V I+ +D + + P I F G QGSGK+ T ++ H ++K
Sbjct: 3 TVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG 62
Query: 134 LVCADTFRAGAYDQLKQNATKARIPFY 160
D F DQLK N
Sbjct: 63 YASIDDFYLTHEDQLKLNEQFKNNKLL 89
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 39.2 bits (90), Expect = 1e-04
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ P + F G G GKT+ A ++ + LV D
Sbjct: 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 38.3 bits (88), Expect = 3e-04
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
P G + G G+GK+T +++ K ++ D
Sbjct: 49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 94
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 37.2 bits (86), Expect = 5e-04
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKA 155
K +I G G+G +T + ++ KA + D F +K +
Sbjct: 3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRR 58
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 37.1 bits (85), Expect = 6e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 95 QPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNW-KACLVCADTFRAG 143
+ + + I GL SGK+T +L + ++ A + D R G
Sbjct: 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG 67
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 36.9 bits (84), Expect = 6e-04
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGA 144
N+++ G GSGK+T LA +D
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYI 44
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 36.6 bits (83), Expect = 6e-04
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
P+ + I G SGK L ++ ++ +
Sbjct: 1 PRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 43
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 36.4 bits (83), Expect = 6e-04
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKAR 156
NV VG + SGKTT K +++ W+ V ++ +
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHE 56
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 36.5 bits (83), Expect = 0.001
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 94 HQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ + +IM +G G GKTT +A + L +D
Sbjct: 13 DDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 36.4 bits (83), Expect = 0.001
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 61 DFDEMASGL--NKRRMIQSSVYKELIKLVDPGVKAHQ-----------PQKGKPNVIMFV 107
D D + L R + I L + H+ PQ G+ +
Sbjct: 3 DMDTLRERLLAGDRAALA-----RAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGIT 57
Query: 108 GLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
G+ G GK+TT L K ++ D
Sbjct: 58 GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 91
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 35.0 bits (79), Expect = 0.002
Identities = 7/62 (11%), Positives = 15/62 (24%), Gaps = 3/62 (4%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF 159
+I+ G +GK+ L D+ +++
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58
Query: 160 YG 161
G
Sbjct: 59 DG 60
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 35.3 bits (80), Expect = 0.002
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNA 152
+ P + G GSGKT+ + + ++ DTF+ + +
Sbjct: 24 QGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFKQQHPNFDELVK 80
Query: 153 TKARIPFYGSSKGKRNPIHNM 173
+ + +
Sbjct: 81 LYEKDVVKHVTPYSNRMTEAI 101
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 35.1 bits (79), Expect = 0.002
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKAR 156
+ V+ GL SGKTT +L+ L++ + V + +
Sbjct: 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT-LREQGISVCVFHMDDHIVERAKRYHTGNEEW 76
Query: 157 IPFYGSSKGKRNPIHNM 173
+Y H +
Sbjct: 77 FEYYYLQWDVEWLTHQL 93
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 34.8 bits (79), Expect = 0.002
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLA 122
P V++ VG G+GK+T +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHL 35
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 35.1 bits (79), Expect = 0.003
Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 10/113 (8%)
Query: 76 QSSVYKELIKLVDPGVKAHQPQKGK-PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
+++L+ Q G+ + ++ L G G L+ + L + +
Sbjct: 7 LRPDFEKLVASY---------QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHK 57
Query: 135 VCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLIPTYEKSFHW 187
C P G + + + + L
Sbjct: 58 SCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAK 110
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 34.2 bits (77), Expect = 0.004
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
++ + +G+ GSGK+ +++A+ +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 43
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 34.5 bits (78), Expect = 0.004
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHY 125
K +I VG GSGK T C K+ Y
Sbjct: 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 33.8 bits (76), Expect = 0.006
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
+ +VI +G G+GK T C KL Y
Sbjct: 4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDY 32
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 33.4 bits (75), Expect = 0.009
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125
P V+ +G G+GK T C ++ Y
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKY 25
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 32.5 bits (73), Expect = 0.016
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125
P +M G SGK T C + Y
Sbjct: 1 ADPLKVMISGAPASGKGTQCELIKTKY 27
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 32.3 bits (72), Expect = 0.017
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
++ K I+ G G+GKT+ +A
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAEL 29
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.4 bits (72), Expect = 0.017
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYL 126
+I+ +G GSGK+T +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNP 27
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 32.7 bits (73), Expect = 0.018
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
+P ++ G GSGKTT + V
Sbjct: 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPV 43
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 32.3 bits (72), Expect = 0.020
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
I G+ G+GK T KL+ + +
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 31.9 bits (71), Expect = 0.023
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 12/89 (13%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161
+ + G G GK+TTC +LA + + + D P +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLA----AQLDNSAYIEGDIINHMVVGGY--------RPPWE 50
Query: 162 SSKGKRNPIHNMGLSLIPTYEKSFHWNFN 190
S + N+ + +
Sbjct: 51 SDELLALTWKNITDLTVNFLLAQNDVVLD 79
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.1 bits (71), Expect = 0.027
Identities = 8/87 (9%), Positives = 18/87 (20%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
+ G +GKT C LA + + + + S
Sbjct: 25 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS 84
Query: 163 SKGKRNPIHNMGLSLIPTYEKSFHWNF 189
+ + + +
Sbjct: 85 GSDVLDNVAYARAFNTDHQTQLLYQAS 111
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 32.1 bits (71), Expect = 0.028
Identities = 14/129 (10%), Positives = 30/129 (23%), Gaps = 1/129 (0%)
Query: 62 FDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
++ +++ + + A + G M G G GKTT L
Sbjct: 13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA-HL 71
Query: 122 AYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLIPTY 181
L + + +K + Y + ++ +I
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDE 131
Query: 182 EKSFHWNFN 190
Sbjct: 132 VDGMSGGDR 140
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 32.0 bits (71), Expect = 0.029
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 103 VIMFVGLQ-GSGKTTTCTKLAYHYLKKNWKACLVCADTFRA 142
+I V + G+GKTT L+ + K V D A
Sbjct: 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMA 44
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 32.1 bits (71), Expect = 0.029
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 103 VIMFV-GLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYG 161
I G G+GKTT L + +V AD A L +
Sbjct: 3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVL 62
Query: 162 SSKGKRNPIHNMG 174
+ + + + +G
Sbjct: 63 AGEARIDEAIYVG 75
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 31.4 bits (70), Expect = 0.038
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136
+ K I+ GL+G+GKTT + + + +
Sbjct: 1 RSK--YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 37
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 31.4 bits (70), Expect = 0.047
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 99 GKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131
G+ +I+ GL +GKTT C L L+ N K
Sbjct: 1 GRGKLILIEGLDRTGKTTQCNILY-KKLQPNCK 32
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor,
FtsY {Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 29.7 bits (67), Expect = 0.050
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 9 KITSALRSLSNATVINEEVLNSMLKEICAALLEADVNI----KLVKKLRENVRQVIDF-- 62
+ L +++E E+ L++ADV + ++++L E ++
Sbjct: 17 TFFGRVVKLLKGKKLDDETRE----ELEELLIQADVGVETTEYILERLEEKDGDALESLK 72
Query: 63 DEMASGLN 70
+ + LN
Sbjct: 73 EIILEILN 80
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 31.1 bits (69), Expect = 0.052
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
+G +I+ G+ +GK+T KL +A L+
Sbjct: 2 RGA--LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 37
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.2 bits (69), Expect = 0.052
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
+ +G + SGK+ KLA +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVF 31
>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor,
FtsY {Thermus aquaticus [TaxId: 271]}
Length = 58
Score = 28.9 bits (65), Expect = 0.056
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 26 EVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDEMASGLNKRRMIQSSVYKELIK 85
L +L+E+ ALL ADV + +++ + VR R+ ++ +V ++L+
Sbjct: 6 GNLEEVLEELEMALLAADVGLSATEEILQEVRASG-----------RKDLKEAVKEKLVG 54
Query: 86 LVDP 89
+++P
Sbjct: 55 MLEP 58
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 31.1 bits (69), Expect = 0.061
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+ G G GK+TT L +V D
Sbjct: 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 30.7 bits (68), Expect = 0.062
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
+ +G G+GK T KLA ++
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNF 27
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.1 bits (69), Expect = 0.069
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
+++FVG GSGKTT + YL+ N+K V D
Sbjct: 2 IVVFVGTAGSGKTTLTGEFG-RYLEDNYKVAYVNLD 36
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.6 bits (68), Expect = 0.079
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
++ +G G+GK T KLA
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKL 24
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 30.7 bits (68), Expect = 0.080
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
+ L + + ++A + +K ++ G G GKTT + H L N + A
Sbjct: 15 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA-HVIAHELGVNLRVTSGPAIEK 73
Query: 141 RAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLI 178
L + + I F +
Sbjct: 74 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 111
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 30.8 bits (68), Expect = 0.082
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKN 129
P + G GK+T L Y + +
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.0 bits (69), Expect = 0.084
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV---CADTFRAGAYDQLKQNATKARIPFY 160
++ G G+GK+ +LAY L + + +V + G + N R +
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTKGW 112
Query: 161 GSSKGKRNP--IHNMGLSLIPTYEKSFHWNFN 190
RN LS++P + +
Sbjct: 113 SFFNEIRNDYDWQRYALSVVPRGKTDEAEEWA 144
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.086
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVC 136
+ G G+GKT + Y+ + + + +
Sbjct: 28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 61
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.094
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF 159
+I+ G G+GKT ++ + +A L + + QL +NA + F
Sbjct: 28 IILATGATGTGKTLLVSRFVENACANKERAILFAYEE----SRAQLLRNAYSWGMDF 80
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 30.6 bits (68), Expect = 0.098
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
G G GK+TT L + K +V D
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 30.5 bits (67), Expect = 0.10
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 8/77 (10%)
Query: 76 QSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
+ L L D Q ++ G G+GK T C L +
Sbjct: 16 NEELTNFLKSLSD--------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 67
Query: 136 CADTFRAGAYDQLKQNA 152
F + +L+ N
Sbjct: 68 DVRQFVTASNRKLELNV 84
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 29.9 bits (66), Expect = 0.11
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHY 125
PN++ G G GKTT +LA
Sbjct: 5 PNIL-LTGTPGVGKTTLGKELASKS 28
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.9 bits (66), Expect = 0.11
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
++ +G G+GK T L +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERF 26
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 29.9 bits (66), Expect = 0.13
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
I+ +GL G+GK T ++ Y
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKY 24
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 29.9 bits (66), Expect = 0.13
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
I+ +G +GK T + Y
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKY 24
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 29.6 bits (65), Expect = 0.13
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLA 122
P + VGL GSGK+T +LA
Sbjct: 2 PKAV-LVGLPGSGKSTIGRRLA 22
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 29.8 bits (66), Expect = 0.13
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
+G GSGK T +++ H+
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHF 30
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 30.5 bits (68), Expect = 0.14
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKAR 156
+ + I+ G G+GKT + K A Y V A +++ +
Sbjct: 90 RDERNQSIIVSGESGAGKTVS-AKYAMRYF------ATVSGSASEANVEEKVLASNPIME 142
Query: 157 IPFYGSSKGKRNP 169
G++K RN
Sbjct: 143 S--IGNAKTTRND 153
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.9 bits (66), Expect = 0.15
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
++ +GL G+GK T K+ Y
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAY 24
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.1 bits (66), Expect = 0.15
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 69 LNKRRMIQ--SSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126
KR+M+ ++ +E KL+ G+ + + G +GKT L
Sbjct: 10 SEKRKMVFHITTGSQEFDKLLGGGI-----ESMA--ITEAFGEFRTGKTQLSHTLCVTAQ 62
Query: 127 KKNWKACLVCADTF 140
F
Sbjct: 63 LPGAGGYPGGKIIF 76
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.5 bits (65), Expect = 0.19
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNW------KACLVCADTF 140
P +I G SGK++ C K+ L +N + ++ D+F
Sbjct: 2 PFLIGVSGGTASGKSSVCAKIV-QLLGQNEVDYRQKQVVILSQDSF 46
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.3 bits (64), Expect = 0.22
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 76 QSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
Q L K + H ++F G G+GKT+T L + +
Sbjct: 17 QDHAVTVLKKTLKSANLPH---------MLFYGPPGTGKTSTILALTKELYGPDLMKSRI 67
Query: 136 C 136
Sbjct: 68 L 68
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 29.3 bits (64), Expect = 0.22
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
I VG G+GK+T +LA
Sbjct: 5 IFLVGPMGAGKSTIGRQLA 23
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 29.4 bits (64), Expect = 0.25
Identities = 13/110 (11%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
++L L+ ++ +G G+GKT T + + K A V + F
Sbjct: 26 QQLDILLGNWLRN---PGHHYPRATLLGRPGTGKTVTL-RKLWELYKDKTTARFVYINGF 81
Query: 141 RAGAYDQLKQNATKARIPFYGSSKGKRNPIHNMGLSLIPTYEKSFHWNFN 190
+ + ++ + R+ + + + + +
Sbjct: 82 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLD 131
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 0.31
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 15/85 (17%)
Query: 52 LRENVRQVIDFDEMASGLNKRRMIQSSVYKELIKLVDPGVKAHQPQKGKPNVIMFVGLQG 111
+RE +R+ + +E L S + VIM G
Sbjct: 1 MRERIREHLSSEESVGLL-------FSGCTGINDKTLGARGGE--------VIMVTSGSG 45
Query: 112 SGKTTTCTKLAYHYLKKNWKACLVC 136
GK+T + A + K +
Sbjct: 46 MGKSTFVRQQALQWGTAMGKKVGLA 70
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 28.5 bits (63), Expect = 0.36
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131
+K + I+ G S +L + K K
Sbjct: 11 EKSEGISILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.8 bits (64), Expect = 0.39
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
I G G GKTT + +H+ + L+
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLI 39
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 0.45
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
V F G+ GSGKT + + +
Sbjct: 36 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDE 68
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 28.4 bits (63), Expect = 0.47
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 102 NVIMFVGLQGSGKTTTCT 119
+V +F GL G+GKTT
Sbjct: 15 DVTVFFGLSGTGKTTLSA 32
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 28.5 bits (62), Expect = 0.50
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
+ G +GK+ C LA
Sbjct: 36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG 67
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 28.0 bits (61), Expect = 0.52
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
I+F+G GSGK+T LA
Sbjct: 3 IVFIGFMGSGKSTLARALA 21
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 28.0 bits (61), Expect = 0.56
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 102 NVIMFVGLQGSGKTTTCTKLA 122
I VG +G G TT +LA
Sbjct: 3 EPIFMVGARGCGMTTVGRELA 23
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 28.1 bits (61), Expect = 0.58
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 98 KGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLV 135
+ K I G +GK+T L V
Sbjct: 1 RIK--KISIEGNIAAGKSTFVNILKQLCEDWEVVPEPV 36
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 28.0 bits (61), Expect = 0.64
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQN 151
K I G SGK+T +A + + L +RA Y LK
Sbjct: 2 KTIQIAIDGPASSGKSTVAKIIAKDF---GFT-YLDTGAMYRAATYMALKNQ 49
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.1 bits (61), Expect = 0.64
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGS 162
VI G G+GK T C +A W L +R A L + A
Sbjct: 5 VITIDGPSGAGKGTLCKAMAEAL---QWH-LLDSGAIYRVLALAALHHHVDVASEDALVP 60
Query: 163 SKGKRNPIHNMGLSLIPTYEKSFHWNFN 190
+ + + +
Sbjct: 61 LASHLDVRFVSTNGNLEVILEGEDVSGE 88
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 27.6 bits (60), Expect = 0.88
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 63 DEMASGLNKRRMIQSSVYKELIKLVDPGVK-AHQPQKGKPNVIMFVGLQGSGKTTTCTKL 121
++ AS + + ++ + V+ + ++ G SGKT K+
Sbjct: 1 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKI 60
Query: 122 AYHYLKKNWKAC 133
A K C
Sbjct: 61 AEESNFPFIKIC 72
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 27.8 bits (61), Expect = 0.89
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126
Q + I+ G G+GKT TK YL
Sbjct: 87 QDREDQSILCTGESGAGKTEN-TKKVIQYL 115
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.7 bits (61), Expect = 0.93
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126
+ ++ G G+GKT TK YL
Sbjct: 121 DDRQNQSLLITGESGAGKTEN-TKKVIQYL 149
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 27.7 bits (61), Expect = 0.97
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 102 NVIMFVGLQGSGKTT 116
+V +F GL G+GKTT
Sbjct: 15 DVAVFFGLSGTGKTT 29
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 27.7 bits (60), Expect = 0.97
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 111 GSGKTTTCT-KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATK 154
GSGKT T ++AY +K+ + A TF A ++++
Sbjct: 34 GSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.4 bits (59), Expect = 0.97
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
+ L ++ + + + +G G GKTT
Sbjct: 26 EALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTV 67
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 27.6 bits (61), Expect = 1.00
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKN 129
I G+ G GK+TT +A +
Sbjct: 9 IYLDGVYGIGKSTTGRVMASAASGGS 34
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.4 bits (59), Expect = 1.1
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKNWKACL 134
+ G GSGKT LA + L
Sbjct: 38 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL 69
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 27.2 bits (60), Expect = 1.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 102 NVIMFVGLQGSGKTT 116
+V +F GL G+GKTT
Sbjct: 15 DVAVFFGLSGTGKTT 29
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 27.4 bits (60), Expect = 1.3
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126
Q + ++ G G+GKT +K +L
Sbjct: 82 QSQENQCVIISGESGAGKTEA-SKKIMQFL 110
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 27.1 bits (59), Expect = 1.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 101 PNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKAC 133
P I+ +G G GKT +LA K
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 26.9 bits (58), Expect = 1.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYH 124
V V G+GK+ +LA
Sbjct: 31 VGALVSPGGAGKSMLALQLAAQ 52
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 140
Score = 26.2 bits (58), Expect = 1.8
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 3 LADLGRKITS---ALRSLSNATV-INEEVLNSMLKEICAALLE 41
L LG + + SL A + ++L L E + +
Sbjct: 40 LRGLGSSPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQ 82
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 26.2 bits (57), Expect = 2.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWK 131
K ++ G G+GKTT + +
Sbjct: 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNV 63
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.6 bits (58), Expect = 2.1
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLA 122
K +F G SGKTT L
Sbjct: 153 KKRYWLFKGPIDSGKTTLAAALL 175
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.5 bits (58), Expect = 2.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 103 VIMFVGLQGSGKTTTCTKLAYHYLKKN 129
+ G G GKTTT L + +
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDD 32
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 26.6 bits (58), Expect = 2.2
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126
+ I+ G G+GKT TK Y
Sbjct: 119 TDRENQSILITGESGAGKTVN-TKRVIQYF 147
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/91 (13%), Positives = 27/91 (29%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKAR 156
+ + + + +GL+ +GK++ L + +Y K
Sbjct: 25 KGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEI 84
Query: 157 IPFYGSSKGKRNPIHNMGLSLIPTYEKSFHW 187
+ N+ +I E F+W
Sbjct: 85 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNW 115
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 26.2 bits (56), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 111 GSGKTTTCT-KLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATK 154
GSGKT T K+A+ ++A + A TF A ++K+ +
Sbjct: 24 GSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 68
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 26.6 bits (58), Expect = 2.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 97 QKGKPNVIMFVGLQGSGKTTTCTKLAYHYL 126
+ + G G+GKT TK YL
Sbjct: 117 TDRENQSCLITGESGAGKTEN-TKKVIMYL 145
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 25.7 bits (55), Expect = 3.1
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
++ +G SGK+T ++ +
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIH 26
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.9 bits (56), Expect = 3.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 104 IMFVGLQGSGKTTTCTKLAY 123
++ +G SGK+T ++
Sbjct: 9 LLLLGAGESGKSTIVKQMRI 28
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 25.8 bits (55), Expect = 3.4
Identities = 4/28 (14%), Positives = 6/28 (21%)
Query: 111 GSGKTTTCTKLAYHYLKKNWKACLVCAD 138
GKT L ++
Sbjct: 12 EVGKTVASCALLQAAKAAGYRTAGYKPV 39
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 25.3 bits (54), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 104 IMFVGLQGSGKTTTCTKLAYH 124
I+ +GL +GKTT +LA
Sbjct: 19 ILLLGLDNAGKTTLLKQLASE 39
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.4 bits (54), Expect = 3.9
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTF 140
++F+GL +GKTT L L ++ ++
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL 52
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 25.3 bits (54), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
I+ +GL +GKTT KL
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQ 36
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.6 bits (55), Expect = 4.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 104 IMFVGLQGSGKTT 116
I+ +G SGK+T
Sbjct: 5 ILLLGAGESGKST 17
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 25.6 bits (56), Expect = 4.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
KE+++ + + H+ P ++ VG G GKT +A
Sbjct: 22 KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 63
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.3 bits (54), Expect = 4.2
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 104 IMFVGLQGSGKTTTCTKLAY 123
++ +G SGK+T ++
Sbjct: 5 LLLLGTGESGKSTFIKQMRI 24
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase
{Lactobacillus casei [TaxId: 1582]}
Length = 296
Score = 25.4 bits (54), Expect = 4.4
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 96 PQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCAD 138
PQ+ + I G +GK + +A+ L A
Sbjct: 35 PQQ-QGRYIHVTG--TNGKGSAANAIAHVLEASGLTVGLYTAP 74
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 25.7 bits (55), Expect = 4.4
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQ 150
K + + G+GKT K L+ A T R A + +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPT-RVVAAEMEEA 57
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.3 bits (54), Expect = 4.4
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 81 KELIKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHY 125
+ + K + ++A + + + ++ G G GKTT +A
Sbjct: 15 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 59
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 25.3 bits (54), Expect = 4.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYD 146
I+ G G+GK+T KL Y + T RAG +
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVN 46
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 24.8 bits (53), Expect = 5.0
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 4/38 (10%)
Query: 102 NVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADT 139
V GSGK+T LV +
Sbjct: 9 QVAHLHAPTGSGKST----KVPAAYAAQGYKVLVLNPS 42
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 25.5 bits (55), Expect = 5.3
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 92 KAHQPQKGKP-NVIMFVG 108
K QP + N+I+F+G
Sbjct: 24 KKLQPAQTAAKNLIIFLG 41
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 24.8 bits (53), Expect = 5.4
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
I+ +G G GK++ + A + +
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK 47
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.1 bits (53), Expect = 5.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 100 KPNVIMFVGLQGSGKTT 116
K + + +G GSGK++
Sbjct: 22 KEGINLIIGQNGSGKSS 38
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.0 bits (53), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 99 GKPNVIMFVGLQGSGKTTTCTKLAYHY 125
GK ++F+GL +GKTT L
Sbjct: 1 GK---LLFLGLDNAGKTTLLHMLKNDR 24
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 25.0 bits (54), Expect = 5.8
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 13/115 (11%)
Query: 21 TVINEEVLNSML--KEICAALLEADVNI---KLVKKLRENVRQVIDF-DEMASGLNKRRM 74
VL S+ + A +E+ I K +++ + + D S +
Sbjct: 30 FDHTSGVLESVEDGTPVLAIGVESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENG 89
Query: 75 IQSSVYKEL-------IKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
++ + P V + +++ G SGKT L
Sbjct: 90 FMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALG 144
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 24.9 bits (54), Expect = 6.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 103 VIMFVGLQGSGKTTT 117
++ +G G+GKTTT
Sbjct: 34 IVTLIGANGAGKTTT 48
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 24.9 bits (54), Expect = 6.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 103 VIMFVGLQGSGKTTT 117
V + +G GSGK+T
Sbjct: 32 VTLIIGPNGSGKSTL 46
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 24.6 bits (52), Expect = 6.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
++ +GL +GKTT K
Sbjct: 5 LLMLGLDNAGKTTILKKFNGED 26
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 24.6 bits (52), Expect = 6.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
++ VGL +GKTT + + +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNE 39
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 25.2 bits (53), Expect = 6.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 100 KPNVIMFVGLQGSGKTT 116
K + + +G GSGK++
Sbjct: 22 KEGINLIIGQNGSGKSS 38
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 24.6 bits (52), Expect = 7.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 104 IMFVGLQGSGKTTTCTKLAYHY 125
I+ +GL G+GKTT +L
Sbjct: 20 ILILGLDGAGKTTILYRLQIGE 41
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 24.3 bits (51), Expect = 7.3
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 93 AHQPQKGKPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFR 141
+H +KG + G+GKT + LV A T
Sbjct: 1 SHMLKKGM--TTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRV 47
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 24.6 bits (53), Expect = 7.5
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 84 IKLVDPGVKAHQPQKGKPNVIMFVGLQGSGKTTTCTKLA 122
+ +K V+ VGL +GK+ KLA
Sbjct: 15 LMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLA 53
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 24.6 bits (52), Expect = 7.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 104 IMFVGLQGSGKTTTCTKLAY 123
I+ VGL +GKTT KL
Sbjct: 3 ILMVGLDAAGKTTILYKLKL 22
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 24.5 bits (53), Expect = 8.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 103 VIMFVGLQGSGKTTT 117
++ VG G+GK+T
Sbjct: 27 ILHLVGPNGAGKSTL 41
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 24.3 bits (51), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 104 IMFVGLQGSGKTTTCTKLAY 123
+ VGLQ SGKTT +A
Sbjct: 5 LTLVGLQYSGKTTFVNVIAS 24
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 24.5 bits (53), Expect = 8.0
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 104 IMFVGLQGSGKTTTCTKLAYH 124
++ G G GK+ T +L
Sbjct: 17 VLITGDSGVGKSETALELVQR 37
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 24.8 bits (53), Expect = 8.3
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 92 KAHQPQKGKP-NVIMFVG 108
+ ++ + NVI F+G
Sbjct: 19 LGIKLREKQAKNVIFFLG 36
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 24.6 bits (53), Expect = 8.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 103 VIMFVGLQGSGKTTT 117
+ +G G+GKTTT
Sbjct: 30 IFGLIGPNGAGKTTT 44
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 24.6 bits (52), Expect = 8.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 104 IMFVGLQGSGKTTTCTKLA 122
I+ G G GKTT K+
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 24.2 bits (51), Expect = 9.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 103 VIMFVGLQGSGKTTTCTKLA 122
V++ G GK+T L
Sbjct: 4 VVVLSGPSAVGKSTVVRCLR 23
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 24.4 bits (53), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 103 VIMFVGLQGSGKTTT 117
VI +G GSGK+T
Sbjct: 30 VISIIGSSGSGKSTF 44
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 24.5 bits (52), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 111 GSGKTTTCT-KLAYHYLKKNWKACLVCADTFRAGAYDQLKQ 150
GSGKT T ++AY +K+ + A TF A ++++
Sbjct: 34 GSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRE 74
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 24.1 bits (52), Expect = 9.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 104 IMFVGLQGSGKTTTCTKL 121
++ G G GK+ T +L
Sbjct: 18 VLITGDSGIGKSETALEL 35
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a3 [TaxId: 9606]}
Length = 93
Score = 23.6 bits (51), Expect = 9.9
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 26 EVLNSMLKEICAALLEADVNIKLVKKLRENVRQVIDFDE 64
E+L L K + L N +DF E
Sbjct: 35 ELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVE 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.387
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 694,832
Number of extensions: 30701
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 189
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)