BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4316
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 161 CYEYTLALVKPHAFRHV---EDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPV 217
E TL +VKP A + +++ IQE PE+A EF+ ER
Sbjct: 2 AVERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFT-PEKAGEFYYVHRERPFF 60
Query: 218 KVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNA 277
+ LV +M SGPV VL + AI+R ++GP D ++A+++ P S+RA++G + NA
Sbjct: 61 Q--ELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNA 118
Query: 278 IYGSRNEEEA 287
I+ S + E A
Sbjct: 119 IHASDSPESA 128
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
E TL+++KP A + +IE ++ EQA F+ +ER P
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKER-PF-FG 61
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGPV V VL + AI LMG +P +A+ ++RA Y + NA++G
Sbjct: 62 DLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAE---AGTIRADYAQSIDANAVHG 118
Query: 281 SRNEEEAA 288
S + E AA
Sbjct: 119 SDSPESAA 126
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
E TL+++KP A + +IE ++ EQA F+ +ER P
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKER-PF-FG 61
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGPV V VL + AI LMG +P +A+ ++RA Y + NA++G
Sbjct: 62 DLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAE---AGTIRADYAQSIDANAVHG 118
Query: 281 SRNEEEAA 288
S + E AA
Sbjct: 119 SDSPESAA 126
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 153 APIVQNLHCYEYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFIT 210
P ++ +E T +VKP + + DI ++ E A E +
Sbjct: 15 VPRGSHMSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHY-- 72
Query: 211 REERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYG 270
E D LV ++ SGPV MV Q A R+ +MG DP ++ P ++R YG
Sbjct: 73 GEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESA---PGTIRGDYG 129
Query: 271 VNDIMNAIYGSRNEEEAA 288
++ N I+GS +E+E A
Sbjct: 130 LDLGRNVIHGSDHEDEGA 147
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 161 CYEYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVK 218
E TL+++KP A + + I + EQA F+ +ER K
Sbjct: 3 AMEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFK 62
Query: 219 VPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAI 278
LV +M+SGPV V +L + A+ + LMG +P +AK ++RA + + NA+
Sbjct: 63 --DLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAK---AGTIRADFAESIDANAV 117
Query: 279 YGSRNEEEA 287
+GS + E A
Sbjct: 118 HGSDSLENA 126
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 161 CYEYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVK 218
E TL+++KP A + I + A +F+ ER K
Sbjct: 6 ALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFK 65
Query: 219 VPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAI 278
LV +M+SGPV + VL + AI + LMG DP KA++ ++RA + + NA+
Sbjct: 66 --DLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEK---GTIRADFADSIDANAV 120
Query: 279 YGSRNEEEA 287
+GS E A
Sbjct: 121 HGSDAPETA 129
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
E T +VKP + + DI ++ E A E + E++ P
Sbjct: 9 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDK-PF-FD 66
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV ++ SGPV MV A R+ LMG D A+ P ++R YG + N I+G
Sbjct: 67 GLVSFITSGPVFAMVWEGADATRQVRQLMGATD---AQDAAPGTIRGDYGNDLGHNLIHG 123
Query: 281 SRNEEEAA 288
S +E+E A
Sbjct: 124 SDHEDEGA 131
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
E T +VKP + + DI ++ E A E + E++ P
Sbjct: 26 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDK-PF-FD 83
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV ++ SGPV MV A R+ LMG D A+ P ++R YG + N I+G
Sbjct: 84 GLVSFITSGPVFAMVWEGADATRQVRQLMGATD---AQDAAPGTIRGDYGNDLGHNLIHG 140
Query: 281 SRNEEEAA 288
S +E+E A
Sbjct: 141 SDHEDEGA 148
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV +M SGP+ V VL + A++R L+G +P A +LRA Y + N +GS
Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGS 118
Query: 282 RNEEEAA 288
+ E AA
Sbjct: 119 DSVESAA 125
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
E T +VKP + + +I ++ PE A + + EE+ P
Sbjct: 2 EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEK-PF-FG 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV ++ SGPV MV + + ++MG P +A P ++R +GV N I+G
Sbjct: 60 ELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA---PGTIRGDFGVTVAKNIIHG 116
Query: 281 SRNEEEA 287
S + E A
Sbjct: 117 SDSLESA 123
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 161 CYEYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVK 218
E TL+++KP + I +E QA F+ + R K
Sbjct: 1 AIERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFK 60
Query: 219 VPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAI 278
LV +M+SGPV +MVL + A+ +MG +P +A ++R + + N +
Sbjct: 61 --DLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAE---GTIRKDFATSIDKNTV 115
Query: 279 YGSRNEEEA 287
+GS + E A
Sbjct: 116 HGSDSLENA 124
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
L+ ++ S PV MV+ + A+ H++G +P +A P S+R G+ N I+GS
Sbjct: 61 LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS---PGSIRGDLGLTVGRNIIHGS 117
Query: 282 RNEEEA 287
+ E A
Sbjct: 118 DSLESA 123
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
RLV YM SGPV MV +R L+G +P A P ++R + + N I+G
Sbjct: 80 RLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIHG 136
Query: 281 SRNEEEA 287
S + E A
Sbjct: 137 SDSVESA 143
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 212 EERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGV 271
E R+ P LV ++ SGPV MVL + +MG P A P ++R +
Sbjct: 51 EHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDA---LPGTIRGDFAT 107
Query: 272 NDIMNAIYGSRNEEEA 287
N I+GS E+A
Sbjct: 108 TIDENVIHGSATLEDA 123
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
P LV Y++SGPV MV + + ++G P +A P ++RA Y V N I+
Sbjct: 60 PGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIH 116
Query: 280 GS 281
GS
Sbjct: 117 GS 118
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G +P + P S+R +GV+ N I+GS
Sbjct: 67 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIHGS 123
Query: 282 RNEEEA 287
+ E A
Sbjct: 124 DSVESA 129
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G +P + P S+R +GV+ N I+GS
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIHGS 124
Query: 282 RNEEEA 287
+ E A
Sbjct: 125 DSVESA 130
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G +P + P S+R +GV+ N I+GS
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIHGS 124
Query: 282 RNEEEA 287
+ E A
Sbjct: 125 DSVESA 130
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
E TL L+KP + +I I+ E A++ + E + P
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGK-PF-FG 60
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L+ ++ SGPV ++ +AI L G DP +A P ++R + + N ++G
Sbjct: 61 SLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAA--APGTIRGDFALETQFNLVHG 118
Query: 281 SRNEEEA 287
S + E A
Sbjct: 119 SDSAESA 125
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
P++V +M SGP+ V + +R+ ++G +P + P ++R +G++ N +
Sbjct: 71 PKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSA---PGTIRGDFGIDLGRNVCH 127
Query: 280 GSRNEEEA 287
GS + + A
Sbjct: 128 GSDSVDSA 135
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
P LV Y SGP+ MV + ++ L+G +P ++ P ++R + V+ N +
Sbjct: 61 PALVKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQ---PGTIRGDFAVDVGRNVCH 117
Query: 280 GSRNEEEA 287
GS + E A
Sbjct: 118 GSDSVESA 125
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV Y+VSGPV M+ + + ++G +P ++ P ++R + ++ N I+GS
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIHGS 117
Query: 282 RNEEEA 287
+ E A
Sbjct: 118 DSVESA 123
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G +P + P S+R +GV+ N I GS
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIAGS 124
Query: 282 RNEEEA 287
+ E A
Sbjct: 125 DSVESA 130
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G +P + P S+R +GV+ N I GS
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIXGS 124
Query: 282 RNEEEA 287
+ E A
Sbjct: 125 DSVESA 130
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G +P + P S+R +GV+ N I GS
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIGGS 124
Query: 282 RNEEEA 287
+ E A
Sbjct: 125 DSVESA 130
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G +P + P S+R +GV+ N I GS
Sbjct: 68 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIICGS 124
Query: 282 RNEEEA 287
+ E A
Sbjct: 125 DSVESA 130
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 215 DPVKVPR-----LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKY 269
DPV+V R LV Y SGP V VL +A+ L+GP P A P ++R Y
Sbjct: 96 DPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKLVGPTSPHSAP---PGTIRGDY 152
Query: 270 GVND----------IMNAIYGSRNEEEA 287
++ + N ++ S + EA
Sbjct: 153 SIDSPDLAAEEGRVVFNLVHASDSPSEA 180
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 227 VSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEE 286
SGPV MV A ++G +P A P ++R +GV+ NAI+GS +
Sbjct: 67 TSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHGSDSAGS 123
Query: 287 AA 288
AA
Sbjct: 124 AA 125
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
L ++ SGPV MV + +MG P ++ P ++R +G++ N I+GS
Sbjct: 67 LCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESA---PGTIRGDFGIDVGRNIIHGS 123
Query: 282 RNEEEAA 288
N ++AA
Sbjct: 124 ANLDDAA 130
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGV---NDIMNAI 278
L+ Y+ PV VMVL + A+ + G DP A P ++R +G+ + I N I
Sbjct: 67 LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAA---PGTIRGDFGLEVSDAICNVI 123
Query: 279 YGSRNEEEA 287
+ S ++E A
Sbjct: 124 HASDSKESA 132
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
E T VKP + V +I Q ++ EQA + +I + K
Sbjct: 10 ERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYK-- 67
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV Y SGP+ MV + ++ L+G +P + P ++R + V+ N +G
Sbjct: 68 DLVAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADS---LPGTIRGDFAVDVGRNVCHG 124
Query: 281 SRNEEEA 287
S + + A
Sbjct: 125 SDSVDSA 131
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
P L+ Y+ SGPV M + L+G DP +A+ P ++R V N ++
Sbjct: 63 PNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVH 119
Query: 280 GSRNEE 285
GS + E
Sbjct: 120 GSDSPE 125
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
L ++ SGPV MV + I L+G DP K+ P ++R V N I+GS
Sbjct: 92 LCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIHGS 148
Query: 282 RNEEEA 287
E A
Sbjct: 149 DGPETA 154
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV ++ SGPV MV + + ++G + + P S+R +GV+ N I+GS
Sbjct: 63 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASA---PGSIRGDFGVDVGRNIIHGS 119
Query: 282 RNEEEA 287
+ E A
Sbjct: 120 DSVESA 125
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVP 220
+ TL L+KP AF V +I I++ P E +E +
Sbjct: 7 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHY-KEHSEQSYFN 65
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM-NAIY 279
L +MVSGP+ +V AI + L G +P + P ++R NDI N I+
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASA---PGTIRGDLA-NDIRENLIH 121
Query: 280 GSRNEEEA 287
S +E+ A
Sbjct: 122 ASDSEDSA 129
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 165 TLALVKPHAFRH--VEDIEQTIQEXXXXXXXXXXXXXXPEQAAEFFITREERDPVKVPRL 222
TL L+KP AF V +I I++ P E +E + L
Sbjct: 9 TLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHY-KEHSEQSYFNDL 67
Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM-NAIYGS 281
+MVSGP+ +V AI + L G +P + P ++R NDI N I+ S
Sbjct: 68 CDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASA---PGTIRGDLA-NDIGENLIHAS 123
Query: 282 RNEEEA 287
+E+ A
Sbjct: 124 DSEDSA 129
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 226 MVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEE 285
M+SG V MV + A+ L+G +P A ++R YGV+ N I+GS E
Sbjct: 69 MMSGMVLAMVWVGKDAVSIGRKLIGETNPQAAS---VGTIRGDYGVSTGKNIIHGSDCVE 125
Query: 286 EA 287
A
Sbjct: 126 NA 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,544,961
Number of Sequences: 62578
Number of extensions: 321874
Number of successful extensions: 542
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 38
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)