Query psy4316
Match_columns 377
No_of_seqs 261 out of 1212
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 22:25:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04415 NDPk7A Nucleoside diph 100.0 5.7E-44 1.2E-48 311.2 11.6 131 163-295 1-131 (131)
2 cd04418 NDPk5 Nucleoside dipho 100.0 1.7E-43 3.7E-48 308.3 11.7 132 163-296 1-132 (132)
3 PLN02931 nucleoside diphosphat 100.0 2.3E-43 5E-48 321.9 11.7 144 160-305 27-172 (177)
4 PRK14542 nucleoside diphosphat 100.0 3.1E-43 6.7E-48 309.1 12.0 133 162-299 1-135 (137)
5 PRK14541 nucleoside diphosphat 100.0 7.6E-43 1.7E-47 307.5 11.9 134 162-300 1-136 (140)
6 cd04414 NDPk6 Nucleoside dipho 100.0 9.5E-43 2.1E-47 304.6 12.1 132 163-296 1-135 (135)
7 PRK14545 nucleoside diphosphat 100.0 2.6E-42 5.7E-47 303.6 12.4 133 162-299 3-137 (139)
8 PTZ00093 nucleoside diphosphat 100.0 2.6E-42 5.7E-47 306.9 11.8 134 162-300 2-137 (149)
9 COG0105 Ndk Nucleoside diphosp 100.0 4.3E-42 9.3E-47 298.7 12.4 131 162-297 2-134 (135)
10 PRK14540 nucleoside diphosphat 100.0 5.7E-42 1.2E-46 299.6 12.4 131 162-297 2-134 (134)
11 cd04412 NDPk7B Nucleoside diph 100.0 7E-42 1.5E-46 298.4 11.9 131 163-295 1-134 (134)
12 cd04416 NDPk_TX NDP kinase dom 100.0 5.9E-42 1.3E-46 297.8 11.1 131 163-295 1-132 (132)
13 cd00595 NDPk Nucleoside diphos 100.0 9.5E-42 2.1E-46 296.3 11.6 131 163-295 1-133 (133)
14 PRK00668 ndk mulitfunctional n 100.0 1.2E-41 2.6E-46 296.8 12.2 131 162-297 1-133 (134)
15 PRK14543 nucleoside diphosphat 100.0 4.6E-41 9.9E-46 304.8 12.4 139 161-302 4-157 (169)
16 cd04413 NDPk_I Nucleoside diph 100.0 6.3E-41 1.4E-45 290.9 11.6 128 163-295 1-130 (130)
17 PF00334 NDK: Nucleoside dipho 100.0 1.6E-40 3.5E-45 288.1 10.8 132 163-299 1-134 (135)
18 PLN02619 nucleoside-diphosphat 100.0 2.1E-40 4.4E-45 313.4 10.1 136 160-300 86-223 (238)
19 smart00562 NDK These are enzym 100.0 1.9E-39 4.2E-44 281.7 12.3 131 163-298 1-133 (135)
20 PRK14544 nucleoside diphosphat 100.0 4.2E-38 9.1E-43 288.6 12.3 133 162-299 3-180 (183)
21 KOG0888|consensus 100.0 8.8E-39 1.9E-43 286.1 5.7 139 162-302 5-145 (156)
22 PF05186 Dpy-30: Dpy-30 motif; 99.7 6.7E-17 1.5E-21 116.2 4.3 42 321-362 1-42 (42)
23 KOG4109|consensus 99.1 6.6E-11 1.4E-15 101.4 3.9 45 318-362 62-106 (116)
24 KOG0888|consensus 98.5 1.3E-08 2.8E-13 92.1 -1.3 55 55-112 40-96 (156)
25 COG0105 Ndk Nucleoside diphosp 98.0 5.4E-07 1.2E-11 79.6 -1.7 56 58-116 40-97 (135)
26 PRK14542 nucleoside diphosphat 97.9 1.4E-06 3E-11 77.2 -1.6 57 54-113 35-93 (137)
27 PRK14541 nucleoside diphosphat 97.8 3E-06 6.4E-11 75.3 -1.5 57 54-113 35-93 (140)
28 PLN02619 nucleoside-diphosphat 97.7 3.9E-06 8.5E-11 80.6 -1.3 85 26-113 90-180 (238)
29 cd04415 NDPk7A Nucleoside diph 97.7 4.7E-06 1E-10 73.2 -2.1 57 54-113 32-90 (131)
30 PRK14540 nucleoside diphosphat 97.6 7.2E-06 1.6E-10 72.2 -1.1 57 54-113 36-94 (134)
31 PRK14545 nucleoside diphosphat 97.6 7.8E-06 1.7E-10 72.5 -1.4 57 54-113 37-95 (139)
32 PTZ00093 nucleoside diphosphat 97.5 1.2E-05 2.6E-10 72.1 -1.3 57 54-113 36-94 (149)
33 PRK00668 ndk mulitfunctional n 97.4 2.6E-05 5.7E-10 68.4 -1.1 57 54-113 35-93 (134)
34 cd04418 NDPk5 Nucleoside dipho 97.3 2.3E-05 5E-10 68.8 -1.9 56 54-112 32-89 (132)
35 cd04413 NDPk_I Nucleoside diph 97.3 4.6E-05 9.9E-10 66.5 -0.8 57 54-113 34-92 (130)
36 PRK14543 nucleoside diphosphat 97.1 8.7E-05 1.9E-09 68.2 -0.5 57 54-113 39-102 (169)
37 cd04414 NDPk6 Nucleoside dipho 97.0 6.6E-05 1.4E-09 66.1 -2.4 57 54-113 35-93 (135)
38 PLN02931 nucleoside diphosphat 97.0 8.8E-05 1.9E-09 68.6 -2.2 94 17-113 22-121 (177)
39 cd00595 NDPk Nucleoside diphos 96.9 9.9E-05 2.1E-09 64.4 -2.1 57 54-113 34-92 (133)
40 cd04412 NDPk7B Nucleoside diph 96.9 9.8E-05 2.1E-09 64.8 -2.5 57 54-113 34-93 (134)
41 PRK14544 nucleoside diphosphat 96.8 0.00021 4.5E-09 66.5 -1.2 45 66-113 82-128 (183)
42 cd04416 NDPk_TX NDP kinase dom 96.7 0.00017 3.6E-09 63.1 -2.1 57 54-113 33-91 (132)
43 smart00562 NDK These are enzym 96.3 0.00049 1.1E-08 60.0 -2.1 56 55-113 35-92 (135)
44 PF02197 RIIa: Regulatory subu 95.9 0.011 2.4E-07 41.7 3.8 27 332-358 4-31 (38)
45 PF00334 NDK: Nucleoside dipho 95.4 0.0011 2.4E-08 57.6 -3.4 55 55-112 35-91 (135)
46 smart00394 RIIa RIIalpha, Regu 94.7 0.051 1.1E-06 37.9 4.0 30 331-360 4-33 (38)
47 PTZ00378 hypothetical protein; 87.5 0.7 1.5E-05 49.5 4.5 43 320-362 4-47 (518)
48 KOG4109|consensus 84.2 0.5 1.1E-05 41.3 1.2 51 318-368 3-58 (116)
49 COG1799 Uncharacterized protei 36.9 56 0.0012 30.5 4.5 47 161-209 71-117 (167)
50 TIGR03738 PRTRC_C PRTRC system 36.0 30 0.00066 27.6 2.2 29 197-232 21-49 (66)
51 PF14454 Prok_Ub: Prokaryotic 25.5 53 0.0012 26.1 2.0 28 198-232 23-50 (65)
52 PF09230 DFF40: DNA fragmentat 24.7 86 0.0019 30.7 3.7 48 288-355 151-198 (230)
53 KOG3793|consensus 22.1 1.3E+02 0.0028 30.6 4.3 38 331-368 207-250 (362)
54 PF13243 Prenyltrans_1: Prenyl 21.1 97 0.0021 24.9 2.8 32 332-364 77-109 (109)
No 1
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=5.7e-44 Score=311.22 Aligned_cols=131 Identities=39% Similarity=0.638 Sum_probs=129.6
Q ss_pred ceEEEEEcCccccchHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeeccHH
Q psy4316 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAI 242 (377)
Q Consensus 163 ErTLaLIKPDAv~~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~NAV 242 (377)
|+||+|||||+++++|+||++|+++||.|+++||++||+++|++||. +|+|++||++|+++|+|||++||+|.|+|||
T Consensus 1 erTl~iIKPdav~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~--~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYA--EHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316 243 RRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF 295 (377)
Q Consensus 243 ~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF 295 (377)
++||++|||+||..|+...|+|||++||.+.++|+|||||++++|.+|+.|||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998
No 2
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=1.7e-43 Score=308.27 Aligned_cols=132 Identities=47% Similarity=0.782 Sum_probs=130.4
Q ss_pred ceEEEEEcCccccchHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeeccHH
Q psy4316 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAI 242 (377)
Q Consensus 163 ErTLaLIKPDAv~~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~NAV 242 (377)
|+||+||||||++++|+||++|+++||.|+++||++||+++|++||. +|++++||+.|+++|+|||++||+|.|+|||
T Consensus 1 e~Tl~iIKPda~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYA--EHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccC
Q psy4316 243 RRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFK 296 (377)
Q Consensus 243 ~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp 296 (377)
++||++|||+||..|+...|+|||++||.+.++|+|||||++++|.+|+.||||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999997
No 3
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=2.3e-43 Score=321.86 Aligned_cols=144 Identities=40% Similarity=0.616 Sum_probs=140.0
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
...|+||||||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|.|++||++|++||+||||+||+|.
T Consensus 27 ~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~--~h~gk~ff~~Lv~~mtSGP~vam~L~ 104 (177)
T PLN02931 27 SEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYA--EHSSRSFFPSLVKYMTSGPVLVMVLE 104 (177)
T ss_pred CcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHHhCCeEEEEEe
Confidence 44799999999999954 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA 305 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~ 305 (377)
|+|||++||++|||+||..|+..+|+|||++||.+.++|+|||||++++|++|++|||+....+||.+
T Consensus 105 g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~~~~~~~~ 172 (177)
T PLN02931 105 KENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVSSGDVAS 172 (177)
T ss_pred cCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 4
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.1e-43 Score=309.10 Aligned_cols=133 Identities=32% Similarity=0.539 Sum_probs=128.2
Q ss_pred cceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+||||||+. ++|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+|||++||+|.|+
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~f~~~Lv~~m~sGp~va~~l~g~ 78 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYK--VHSARPFYNDLCNYMSSGPIVAAALERD 78 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCeEEEEEeCC
Confidence 48999999999995 4899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII 299 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~ 299 (377)
|||+.||++|||+||..| .|+|||++||.+.++|+|||||++++|.+|+.|||++..
T Consensus 79 nav~~~R~l~Gpt~p~~A---~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~ 135 (137)
T PRK14542 79 NAVLHWREVIGATDPKEA---AAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNE 135 (137)
T ss_pred CHHHHHHHHhCCCCchhC---CCCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChhh
Confidence 999999999999999999 599999999999999999999999999999999998643
No 5
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=7.6e-43 Score=307.48 Aligned_cols=134 Identities=32% Similarity=0.498 Sum_probs=129.0
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+||||||+.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+||||++|+|.|+
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~ff~~Lv~~m~sgp~va~~l~g~ 78 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYA--VHRERPFYGELVEFMSSGPCVPMILEKE 78 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HHcCCccHHHHHHHHhcCCeEEEEEecC
Confidence 489999999999954 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII 300 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ 300 (377)
|||++||++|||+||..| .|+|||++||++.++|+|||||++++|.+|+.|||++..+
T Consensus 79 nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~~ 136 (140)
T PRK14541 79 NAVADFRTLIGATDPAEA---AEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEEV 136 (140)
T ss_pred cHHHHHHHHhCCCCchhC---CCCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhhh
Confidence 999999999999999999 5999999999999999999999999999999999987543
No 6
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=9.5e-43 Score=304.61 Aligned_cols=132 Identities=42% Similarity=0.697 Sum_probs=128.9
Q ss_pred ceEEEEEcCccccc---hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 163 EYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 163 ErTLaLIKPDAv~~---~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
|+||+||||||+++ .|.|++.|+++||.|+++||++||+++|++||. +|.+++||+.|++||+||||+||+|.|+
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~~~f~~~Lv~~m~sgp~val~l~~~ 78 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYA--EHKGKFFYDRLVSFMTSGPSWALILAHE 78 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCeEEEEEEcC
Confidence 68999999999988 588888899999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccC
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFK 296 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp 296 (377)
|||++||++|||+||..|+...|+|||++||++.++|+|||||++++|.+||.||||
T Consensus 79 naV~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 79 NAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred CHHHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999997
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.6e-42 Score=303.62 Aligned_cols=133 Identities=28% Similarity=0.409 Sum_probs=128.6
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
.|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|.+++||++|+++|+||||+||+|.|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~ff~~Lv~~m~sGp~va~~l~g~ 80 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYA--VHAERPFYGELVEFMSRGPIVAAILEKE 80 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCEEEEEEecC
Confidence 589999999999964 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII 299 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~ 299 (377)
|||++||++|||+||..| .|+|||++||.+.++|+|||||++++|.+|+.|||+...
T Consensus 81 nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~ 137 (139)
T PRK14545 81 NAVEDFRTLIGATNPADA---AEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGRE 137 (139)
T ss_pred CHHHHHHHHhCCCCcccC---CCCChhHHhcccccceeEECCCCHHHHHHHHHHhCCccc
Confidence 999999999999999999 599999999999999999999999999999999998743
No 8
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=2.6e-42 Score=306.90 Aligned_cols=134 Identities=32% Similarity=0.502 Sum_probs=129.2
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
.|+||+||||||+.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||+||+|.|+
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~--~~~gk~ff~~Lv~~m~sGp~val~l~g~ 79 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYK--EHKGKPFFPGLVKYISSGPVVCMVWEGK 79 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCEEEEEEeCC
Confidence 589999999999964 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII 300 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ 300 (377)
|||++||++|||+||..| .|+|||++||++.++|+|||||++++|.+|+.|||+...+
T Consensus 80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~ 137 (149)
T PTZ00093 80 NVVKQGRKLLGATNPLES---APGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEEL 137 (149)
T ss_pred CHHHHHHHHhCCCCcccc---CCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhc
Confidence 999999999999999987 7999999999999999999999999999999999987544
No 9
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=298.68 Aligned_cols=131 Identities=32% Similarity=0.519 Sum_probs=128.8
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+||||+|||||++++ +|+||++++++||+|+++||+++++++|++||. +|+++|||..||+||||||+++|+|+|+
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~--~h~~kpFf~~Lv~fitSgPvv~~VleGe 79 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYA--EHKGKPFFGELVEFITSGPVVAMVLEGE 79 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHH--HHcCCCccHHHHhheecCcEEEEEEecH
Confidence 689999999999998 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD 297 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~ 297 (377)
|||+.+|+++|+|||..| .|+|||++||.+..+|+||||||+++|+|||.|||++
T Consensus 80 ~ai~~~R~l~GaTnp~~A---~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 80 NAISVVRKLMGATNPANA---APGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred hHHHHHHHHHCCCCcccC---CCCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 999999999999999999 8999999999999999999999999999999999985
No 10
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.7e-42 Score=299.56 Aligned_cols=131 Identities=33% Similarity=0.544 Sum_probs=127.4
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
.|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|.+++||+.|++||+|||++||+|.|+
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~f~~~L~~~m~sgp~val~l~g~ 79 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYE--EHKGKEFYERLINFMTSGRIVAMVIEGE 79 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHccCCeEEEEEeCC
Confidence 589999999999954 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD 297 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~ 297 (377)
|||++||++|||+||..| +|+|||++||.+.++|+|||||++++|.+|+.|||++
T Consensus 80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 80 NAISTVRKMIGKTNPAEA---EPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred ChHHHHHHHhCCCCcccC---CCCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 999999999999999988 6999999999999999999999999999999999984
No 11
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=7e-42 Score=298.43 Aligned_cols=131 Identities=32% Similarity=0.612 Sum_probs=129.1
Q ss_pred ceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCC-CCcccccceeecCcEEEEEEeec
Q psy4316 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDP-VKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 163 ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk-~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
++||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|.++ +||+.|+++|+|||+++|+|.|+
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~~l~~~m~sGp~val~l~g~ 78 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLE--VYKGVVPELPAMVDELTSGPCIALEIAGE 78 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHH--HHcCccchHHHHHHHHhcCCeEEEEEECC
Confidence 58999999999998 999999999999999999999999999999999 99999 99999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF 295 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF 295 (377)
|||++||+++||+||..|+...|+|||++||++.++|+|||||++++|.+|+.|||
T Consensus 79 nav~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 79 NAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred cHHHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999998
No 12
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=5.9e-42 Score=297.78 Aligned_cols=131 Identities=44% Similarity=0.749 Sum_probs=128.6
Q ss_pred ceEEEEEcCccccc-hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeeccH
Q psy4316 163 EYTLALVKPHAFRH-VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKA 241 (377)
Q Consensus 163 ErTLaLIKPDAv~~-~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~NA 241 (377)
|+||+|||||++.+ +|+|+++|+++||.|+++||++||+++|++||. +|.+++||++|+++|+|||+++|+|.|+||
T Consensus 1 e~Tl~iIKPdav~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~--~~~~~~~~~~lv~~m~sgp~v~l~l~~~~a 78 (132)
T cd04416 1 EYTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYK--EHEEEDYFEDLVEFMTSGPSLILVLSKENA 78 (132)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 68999999999965 899999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316 242 IRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF 295 (377)
Q Consensus 242 V~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF 295 (377)
|++||+++||+||..|+...|+|||++||.+.++|+|||||++++|.+||.|||
T Consensus 79 v~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 79 VEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred HHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998
No 13
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=9.5e-42 Score=296.32 Aligned_cols=131 Identities=44% Similarity=0.740 Sum_probs=128.7
Q ss_pred ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 240 (377)
Q Consensus 163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N 240 (377)
|+||+|||||+++ ++|+||++|+++||.|+++||++||+++|++||. +|.+++||++|+++|+|||+++|+|.|+|
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~~~~~~~lv~~m~sGp~v~l~l~g~~ 78 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYV--EHKGRPFFPDLVQFMSSGPVVAMILEKDN 78 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCeEEEEEecCC
Confidence 6899999999998 5899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316 241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF 295 (377)
Q Consensus 241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF 295 (377)
||++||+++||+||..|+...|+|||++||.+.++|+|||||++++|.+|+.|||
T Consensus 79 av~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 79 AVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred hHHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999998
No 14
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=1.2e-41 Score=296.75 Aligned_cols=131 Identities=34% Similarity=0.550 Sum_probs=127.0
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|.+++||+.|+++|+|||++||+|.|+
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~--~~~~k~f~~~Lv~~m~sgp~~al~l~g~ 78 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYA--EHKEKPFFGELVEFMTSGPVVVMVLEGE 78 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhcCCchHHHHHHHhccCCeEEEEEeCc
Confidence 479999999999954 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD 297 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~ 297 (377)
|||++||++|||+||..| .|+|||++||.+.++|+|||||++++|.+|+.||||+
T Consensus 79 nav~~~r~l~Gp~~p~~a---~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~ 133 (134)
T PRK00668 79 NAIAKVRELMGATNPAEA---APGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133 (134)
T ss_pred hHHHHHHHHhCCCCcccc---CCCcchhhhccccccccEECCCCHHHHHHHHHHhCCC
Confidence 999999999999999876 7999999999999999999999999999999999986
No 15
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.6e-41 Score=304.81 Aligned_cols=139 Identities=24% Similarity=0.409 Sum_probs=129.7
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhccc---ccccCCCCcccccceeecCcEEEEE
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFIT---REERDPVKVPRLVCYMVSGPVRVMV 235 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~---~e~~gk~ff~~LV~~MtSGPvVaL~ 235 (377)
..|+||+||||||+++ +|+||++|+++||+|+++||++||+++|++||.+ .+|++++||++|++||+|||++||+
T Consensus 4 ~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valv 83 (169)
T PRK14543 4 LIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFV 83 (169)
T ss_pred ccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEE
Confidence 4799999999999964 8999999999999999999999999999999942 2689999999999999999999999
Q ss_pred EeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCC----------CccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316 236 LAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN----------DIMNAIYGSRNEEEAARDIRFFFKDIIIEP 302 (377)
Q Consensus 236 L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d----------~~rNaVHgSDs~esA~rEi~fFFp~~~~ep 302 (377)
|.|+|||+.||++||||||..| .|+|||++||.+ .++|+||||||+++|.|||+||||+..+-+
T Consensus 84 l~g~naI~~~R~l~Gpt~p~~a---~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~ 157 (169)
T PRK14543 84 VEGVESVEVVRKFCGSTEPKLA---IPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILT 157 (169)
T ss_pred EECCCHHHHHHHHhCCCCcccc---CCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCcccccc
Confidence 9999999999999999999877 799999999987 789999999999999999999999866543
No 16
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=6.3e-41 Score=290.85 Aligned_cols=128 Identities=34% Similarity=0.547 Sum_probs=124.7
Q ss_pred ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 240 (377)
Q Consensus 163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N 240 (377)
|+||+|||||++. ++|+||++|.++||.|+++||++|++++|++||. +|.+++||+.|+++|+||||+||+|.|+|
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~--~~~~k~~~~~l~~~m~sgp~~al~l~~~n 78 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYA--EHKGKPFFPELVEFMTSGPVVAMVLEGEN 78 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhh--hhcCCchHHHHHHHHhcCCEEEEEEeCCc
Confidence 6899999999995 4899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhcc
Q psy4316 241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFF 295 (377)
Q Consensus 241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFF 295 (377)
||++||++|||+||+.| .|+|||++||++.++|+|||||++++|.+|+.|||
T Consensus 79 av~~~r~l~Gp~~~~~a---~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 79 AVKTVRKLMGATNPADA---APGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred HHHHHHHHhCCCCcccc---CCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 99999999999999977 79999999999999999999999999999999998
No 17
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=1.6e-40 Score=288.15 Aligned_cols=132 Identities=43% Similarity=0.707 Sum_probs=121.0
Q ss_pred ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 240 (377)
Q Consensus 163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N 240 (377)
|+||+||||||+. ++|+||++|+++||.|+++||++|++++|++||. ++.++++|+.|+++|+||||+||+|.|+|
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~--~~~~~~~~~~lv~~m~sgp~v~l~l~g~~ 78 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYE--EHKGKPFFDALVDFMSSGPSVALVLEGEN 78 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTG--GGTTSTTHHHHHHHHTSSEEEEEEEESTT
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEE--eecCCcceecccceeecCCcEEEEeecch
Confidence 6999999999997 4899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316 241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII 299 (377)
Q Consensus 241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~ 299 (377)
||++||+++||+||+.| .|+|||++||.+.++|+|||||++++|.||+.||||+..
T Consensus 79 av~~~r~l~Gp~dp~~a---~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~~ 134 (135)
T PF00334_consen 79 AVEKWRQLCGPTDPEEA---APGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEFE 134 (135)
T ss_dssp HHHHHHHHH--SSGGGS---STTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGGG
T ss_pred hhHHHHHhcCCcchhhh---ccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCccc
Confidence 99999999999999999 899999999999999999999999999999999999754
No 18
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=2.1e-40 Score=313.37 Aligned_cols=136 Identities=27% Similarity=0.381 Sum_probs=130.9
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
...|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+|||+++|+|.
T Consensus 86 ~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~--ehkgKpFf~~Lv~fMtSGPvvamvL~ 163 (238)
T PLN02619 86 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYH--DLKERPFFNGLCDFLSSGPVVAMVWE 163 (238)
T ss_pred chhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHH--HhcCCCcHHHHHHHHhcCCeEEEEEE
Confidence 35799999999999998 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII 300 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ 300 (377)
|+|||+.||++||||||..| .|+|||++||++.++|+|||||++++|.+||.|||++..+
T Consensus 164 GenaV~~~R~LiGpTdP~~A---~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei 223 (238)
T PLN02619 164 GEGVIKYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEEL 223 (238)
T ss_pred CCcHHHHHHHHhCCCCcccc---CCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhc
Confidence 99999999999999999977 7999999999999999999999999999999999987544
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=1.9e-39 Score=281.70 Aligned_cols=131 Identities=40% Similarity=0.661 Sum_probs=125.9
Q ss_pred ceEEEEEcCcccc--chHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeecc
Q psy4316 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 240 (377)
Q Consensus 163 ErTLaLIKPDAv~--~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~N 240 (377)
|+||+|||||++. ++|+||++|+++||.|+++||++|++++|++||. +|.+++||+.|+++|+|||+++|+|.|+|
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~lv~~m~sgp~~~l~l~g~n 78 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYA--EHKGKPFFNDLVEFMTSGPVVAMVLEGED 78 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HhcCCchHHHHHHHhhcCCeEEEEEecCC
Confidence 6899999999995 4899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCC
Q psy4316 241 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDI 298 (377)
Q Consensus 241 AV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~ 298 (377)
||++||++|||+||..+ .|+|||++||.+.++|+|||||++++|.+|+.||||..
T Consensus 79 av~~~r~l~Gp~~~~~~---~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~ 133 (135)
T smart00562 79 AVKTWRTLMGPTDPREA---APGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPES 133 (135)
T ss_pred HHHHHHHHhCCCChhhc---CCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCcc
Confidence 99999999999998555 79999999999999999999999999999999999874
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.2e-38 Score=288.58 Aligned_cols=133 Identities=35% Similarity=0.579 Sum_probs=125.5
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccc--------------------------
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREE-------------------------- 213 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~-------------------------- 213 (377)
.|+||+|||||++.+ +|+||++|.++||.|+++||++||+++|++||. +|
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYP--SSEEWYRSVGNKLLKAYQELGIDPRARL 80 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHH--Hhhhhhhhhhhhhhhhhhhccccccccc
Confidence 689999999999964 899999999999999999999999999999997 43
Q ss_pred -------cCCCCcccccceeecCcEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCCC----------ccc
Q psy4316 214 -------RDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND----------IMN 276 (377)
Q Consensus 214 -------~gk~ff~~LV~~MtSGPvVaL~L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~----------~rN 276 (377)
.+++||+.|++||+||||+||+|.|+|||++||++|||++|..| .|+|||++||.+. ++|
T Consensus 81 ~~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A---~P~TIR~~fg~~~~~~~~~~~~~~~N 157 (183)
T PRK14544 81 GTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKA---PPGTIRGDYSIDSPDLAAEEGRVVYN 157 (183)
T ss_pred ccccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCcccc---CCCCchhhhcccccccccccccceee
Confidence 67899999999999999999999999999999999999999888 7999999999874 799
Q ss_pred eEEcCCCHHHHHHHHHhccCCCc
Q psy4316 277 AIYGSRNEEEAARDIRFFFKDII 299 (377)
Q Consensus 277 aVHgSDs~esA~rEi~fFFp~~~ 299 (377)
+|||||++++|.+|+.|||++..
T Consensus 158 avH~Sds~e~A~rEi~~fF~~~~ 180 (183)
T PRK14544 158 LVHASDSPEEAEREIKFWFREEE 180 (183)
T ss_pred EEECCCCHHHHHHHHHHhCChhh
Confidence 99999999999999999998743
No 21
>KOG0888|consensus
Probab=100.00 E-value=8.8e-39 Score=286.15 Aligned_cols=139 Identities=34% Similarity=0.593 Sum_probs=134.1
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
.|+||++||||++++ +++||.+++++||.|++.++++++++++++||. +|++++||+.||.||+|||++||+|.|.
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~--~~~~~~Ff~~Lv~~m~SGPvvamv~~g~ 82 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYS--DLKSKPFFPGLVEYMSSGPVVAMVLEGD 82 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCcceehhhcCC
Confidence 689999999999977 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP 302 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep 302 (377)
|||+.||+++|||+|..|+..+|+|||++||++.++|++|||||.++|+|||.+||+...+..
T Consensus 83 ~~V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~ 145 (156)
T KOG0888|consen 83 NVVQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVV 145 (156)
T ss_pred CHHHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhhee
Confidence 999999999999999999999999999999999999999999999999999999999854433
No 22
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=99.66 E-value=6.7e-17 Score=116.21 Aligned_cols=42 Identities=38% Similarity=0.752 Sum_probs=37.6
Q ss_pred hHhhhhhhcchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCC
Q psy4316 321 AHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP 362 (377)
Q Consensus 321 ~~r~YL~~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP 362 (377)
|+|+||+++|+|+|++||++|||+||+||++|||+||++|||
T Consensus 1 p~r~YL~~~v~p~L~~gL~~l~~~rP~DPi~~La~~Ll~~~p 42 (42)
T PF05186_consen 1 PARQYLKETVGPVLTEGLAELAKERPEDPIEFLAEYLLKHNP 42 (42)
T ss_dssp -HHHHHHHHTHHHHHHHHHHHHHH--SSHHHHHHHHHHHHG-
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCc
Confidence 579999999999999999999999999999999999999998
No 23
>KOG4109|consensus
Probab=99.09 E-value=6.6e-11 Score=101.42 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=42.7
Q ss_pred chhhHhhhhhhcchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCC
Q psy4316 318 SFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP 362 (377)
Q Consensus 318 s~~~~r~YL~~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP 362 (377)
++.++|+||+++|.|.|++||.+|+|+||.||++|||.||++|.-
T Consensus 62 ~~~ptRqYLdqtVaPiLL~Gm~~lA~~rP~nPi~~LatyLlk~sn 106 (116)
T KOG4109|consen 62 NSMPTRQYLDQTVAPILLQGMAALAKERPSNPISFLATYLLKNSN 106 (116)
T ss_pred cCCchhhhcccchhHHHHHHHHHHHhhCCCCHHHHHHHHHhcccc
Confidence 588999999999999999999999999999999999999999753
No 24
>KOG0888|consensus
Probab=98.50 E-value=1.3e-08 Score=92.13 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=52.7
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL 112 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
|-=.+|...+.+||.|++++|| |-++|.||.|| ++|||+|.|+|+++|-++|+++
T Consensus 40 k~~~~s~~~~e~~Y~~~~~~~F---f~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~ 96 (156)
T KOG0888|consen 40 KLVQLSKELLEEHYSDLKSKPF---FPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTN 96 (156)
T ss_pred eeecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCC
Confidence 5557899999999999999999 99999999999 9999999999999999999988
No 25
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=5.4e-07 Score=79.56 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCccc
Q psy4316 58 AWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPIWS 116 (377)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (377)
-.|.++..+||+..|++|| |..++-||.|| +.|||||.|.|++.|.|+|.|+|.=+
T Consensus 40 ~~~~e~Ae~~Y~~h~~kpF---f~~Lv~fitSgPvv~~VleGe~ai~~~R~l~GaTnp~~A 97 (135)
T COG0105 40 QLSRELAENHYAEHKGKPF---FGELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANA 97 (135)
T ss_pred ccCHHHHHHHHHHHcCCCc---cHHHHhheecCcEEEEEEecHhHHHHHHHHHCCCCcccC
Confidence 4577888999999999999 99999999999 99999999999999999999994433
No 26
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=97.90 E-value=1.4e-06 Score=77.18 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=53.0
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++.+...+||.+.++.|| |..++.+|.+| |+|+++|.|+|++.|-++|++.|
T Consensus 35 ~k~~~lt~~~a~~~Y~~~~~k~f---~~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p 93 (137)
T PRK14542 35 LKYLKLSLEDAKQFYKVHSARPF---YNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDP 93 (137)
T ss_pred eeeecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCc
Confidence 46667889999999999999999 99999999999 99999999999999999999983
No 27
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=97.78 E-value=3e-06 Score=75.28 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=53.0
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-..+.+...+||.+.++.|| |..++.+|.+| |+||+.|.|+|++-|-++|++.+
T Consensus 35 ~k~~~lt~e~a~~~Y~~~~~k~f---f~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p 93 (140)
T PRK14541 35 MKKTRLTKETAGEFYAVHRERPF---YGELVEFMSSGPCVPMILEKENAVADFRTLIGATDP 93 (140)
T ss_pred eeeecCCHHHHHHHHHHHcCCcc---HHHHHHHHhcCCeEEEEEecCcHHHHHHHHhCCCCc
Confidence 46667888899999999999999 99999999999 99999999999999999998883
No 28
>PLN02619 nucleoside-diphosphate kinase
Probab=97.75 E-value=3.9e-06 Score=80.62 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=64.4
Q ss_pred ccccccCCCCChh---HHHHhhhhhhCCC-ccccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCC
Q psy4316 26 KTENRIKDDDNED---EEEKQNYMERGPH-SFSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLN 99 (377)
Q Consensus 26 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 99 (377)
+|---||-|--.. .+-.+...+.|=+ .-.|.-..+.+..++||.+.++.|| |..+|.||.+| |+||++|.|
T Consensus 90 rTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpF---f~~Lv~fMtSGPvvamvL~Gen 166 (238)
T PLN02619 90 RTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPF---FNGLCDFLSSGPVVAMVWEGEG 166 (238)
T ss_pred eEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCc---HHHHHHHHhcCCeEEEEEECCc
Confidence 3444466554222 2333333344432 2256777899999999999999999 99999999999 999999999
Q ss_pred ceeeecccCCCCCC
Q psy4316 100 PIKVSKWPLPPPLP 113 (377)
Q Consensus 100 ~~~~~~~~~~~~~~ 113 (377)
+|+..|-++|+++|
T Consensus 167 aV~~~R~LiGpTdP 180 (238)
T PLN02619 167 VIKYGRKLIGATDP 180 (238)
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999984
No 29
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=97.66 E-value=4.7e-06 Score=73.16 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=53.0
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++.+...+||.+.++.|| |.+++.+|.+| ++|++.|.|+|++.|-++|+++|
T Consensus 32 ~k~~~lt~~~a~~~y~~~~gk~f---~~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p 90 (131)
T cd04415 32 AKMTKLSRKEAQDFYAEHQSKPF---YNELVQFMTSGPIVAMELVGDDAISEWRKLLGPTNS 90 (131)
T ss_pred eeeecCCHHHHHHHHHHhCCCCc---hHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCh
Confidence 46667899999999999999999 99999999999 99999999999999999999883
No 30
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=97.65 E-value=7.2e-06 Score=72.16 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=53.0
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++.+...+||.+.++.|| |..++.+|.+| |+|++.|.|+|+..|.++|++.+
T Consensus 36 ~k~~~lt~~~a~~~Y~~~~~k~f---~~~L~~~m~sgp~val~l~g~nav~~~R~l~Gpt~p 94 (134)
T PRK14540 36 MKMLKLTREMAEEYYEEHKGKEF---YERLINFMTSGRIVAMVIEGENAISTVRKMIGKTNP 94 (134)
T ss_pred eeeecCCHHHHHHHHHHhCCCcc---HHHHHHHHccCCeEEEEEeCCChHHHHHHHhCCCCc
Confidence 45667899999999999999999 99999999999 99999999999999999999884
No 31
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=97.61 E-value=7.8e-06 Score=72.47 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=53.2
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++.+...+||.+.++.|| |..++.+|.+| |+|++.|.|+|+..|-++|++.+
T Consensus 37 ~k~~~lt~~~a~~~Y~~~~~k~f---f~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p 95 (139)
T PRK14545 37 MKLTQLTVADAETFYAVHAERPF---YGELVEFMSRGPIVAAILEKENAVEDFRTLIGATNP 95 (139)
T ss_pred eeeecCCHHHHHHHHHHhCCCCc---hHHHHHHHhcCCEEEEEEecCCHHHHHHHHhCCCCc
Confidence 36677899999999999999999 99999999999 99999999999999999999883
No 32
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=97.53 E-value=1.2e-05 Score=72.08 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=53.2
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++.+...++|.+.+..|| |..++.+|.+| |+|+++|.|+|++-|.++|++.+
T Consensus 36 ~k~~~lt~~~a~~fY~~~~gk~f---f~~Lv~~m~sGp~val~l~g~nav~~~R~l~Gpt~p 94 (149)
T PTZ00093 36 LKMLQPTPEIAEEHYKEHKGKPF---FPGLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNP 94 (149)
T ss_pred eEeecCCHHHHHHHHHHhcCCch---HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHhCCCCc
Confidence 46677899999999999999999 99999999999 99999999999999999998884
No 33
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=97.38 E-value=2.6e-05 Score=68.38 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=53.2
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.+|.+...++|.+.++.|| |..++.+|.+| ++|++.|.|.|+..|.++|++.+
T Consensus 35 ~k~~~ls~~~a~~fy~~~~~k~f---~~~Lv~~m~sgp~~al~l~g~nav~~~r~l~Gp~~p 93 (134)
T PRK00668 35 LKMMQLSRELAEGHYAEHKEKPF---FGELVEFMTSGPVVVMVLEGENAIAKVRELMGATNP 93 (134)
T ss_pred eeeecCCHHHHHHHHHHhcCCch---HHHHHHHhccCCeEEEEEeCchHHHHHHHHhCCCCc
Confidence 46667999999999999999999 99999999999 99999999999999999999885
No 34
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=97.34 E-value=2.3e-05 Score=68.76 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=52.4
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL 112 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
.|.-.+|.....+||.+.++.+| |..+|.+|.+| |+|++.|.|+|++-|-++|+++
T Consensus 32 ~k~~~lt~~~a~~~y~~~~~~~~---~~~Lv~~m~sgp~val~l~g~~aV~~~R~l~Gpt~ 89 (132)
T cd04418 32 KRKLQLSPEQCSDFYAEHYGKMF---FPHLVAYMSSGPIVAMVLARHNAISYWKELLGPTN 89 (132)
T ss_pred eeeecCCHHHHHHHHHHhCCCcc---HHHHHHHHhcCCeEEEEEecCCHHHHHHHHHCCCC
Confidence 46677899999999999999999 99999999999 9999999999999999999888
No 35
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=97.28 E-value=4.6e-05 Score=66.53 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=52.9
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.+|.+..+++|.+.++.|| |..++.+|.+| ++|++.|.|+|++-|-++|++.+
T Consensus 34 ~k~~~ls~~~a~~~y~~~~~k~~---~~~l~~~m~sgp~~al~l~~~nav~~~r~l~Gp~~~ 92 (130)
T cd04413 34 LKMLQLTEELAEEHYAEHKGKPF---FPELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNP 92 (130)
T ss_pred eeeccCCHHHHHHHhhhhcCCch---HHHHHHHHhcCCEEEEEEeCCcHHHHHHHHhCCCCc
Confidence 46678999999999999999999 99999999999 99999999999999999998884
No 36
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=97.14 E-value=8.7e-05 Score=68.16 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=51.0
Q ss_pred ccCCCCccccCCcccc-----ccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVA-----DLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-..+.....+||+ +.+..|| |..++.+|.+| |+||+.|.|+|+.-|-++|++.+
T Consensus 39 ~k~~~lt~e~a~~fY~~~~~~~h~gk~f---f~~Lv~~mtsGP~valvl~g~naI~~~R~l~Gpt~p 102 (169)
T PRK14543 39 AKMLLVDRSMAEKHYLYDDIAVRHGEAV---WKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEP 102 (169)
T ss_pred eeeccCCHHHHHHHhccCccccccCCch---HHHHHHHHccCCeEEEEEECCCHHHHHHHHhCCCCc
Confidence 4556677788888885 8899999 99999999999 99999999999999999999985
No 37
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=97.02 E-value=6.6e-05 Score=66.13 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=52.7
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-..|.+...++|.+.+..+| |..++.+|.+| |+|+..|.|+|++.|-++|++.+
T Consensus 35 ~k~~~lt~~~a~~~Y~~~~~~~f---~~~Lv~~m~sgp~val~l~~~naV~~~r~l~Gp~~p 93 (135)
T cd04414 35 KKELRWTTEDAERFYAEHKGKFF---YDRLVSFMTSGPSWALILAHENAIKTWRALMGPTKV 93 (135)
T ss_pred eeeecCCHHHHHHHHHHhCCCCc---hHHHHHHHhcCCeEEEEEEcCCHHHHHHHHhCCCCh
Confidence 46667888999999999999999 99999999999 99999999999999999998884
No 38
>PLN02931 nucleoside diphosphate kinase family protein
Probab=96.96 E-value=8.8e-05 Score=68.62 Aligned_cols=94 Identities=20% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCccccccCccccccCCCCCh---hHHHHhhhhhhCCCc-cccCCCCccccCCccccccCCchhhhhhhhhhhheeec--
Q psy4316 17 GVGTESVNGKTENRIKDDDNE---DEEEKQNYMERGPHS-FSKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG-- 90 (377)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (377)
|.|..+--.+|---||-|--+ -.+--+...+.|=+- -.|.-.++.+...++|.+.+..|| |.+++.+|.+|
T Consensus 22 ~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~f---f~~Lv~~mtSGP~ 98 (177)
T PLN02931 22 SSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSF---FPSLVKYMTSGPV 98 (177)
T ss_pred CCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCcc---HHHHHHHHHhCCe
Confidence 445556666777778876532 223333344444332 257778899999999999999999 99999999999
Q ss_pred hheeecCCCceeeecccCCCCCC
Q psy4316 91 IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|+|++.|.|+|++.|-++|++.+
T Consensus 99 vam~L~g~naV~~~R~liGptdp 121 (177)
T PLN02931 99 LVMVLEKENAVSDWRTLIGPTDA 121 (177)
T ss_pred EEEEEecCCHHHHHHHHhCCCCh
Confidence 99999999999999999998883
No 39
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=96.92 E-value=9.9e-05 Score=64.44 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=52.5
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++.+..+++|.+.++.|| |..++.+|.+| ++|++.|.|+|++.|-++|++.+
T Consensus 34 ~k~~~lt~~~a~~~Y~~~~~~~~---~~~lv~~m~sGp~v~l~l~g~~av~~~r~l~Gp~~p 92 (133)
T cd00595 34 MKELHLTEEQAEEFYVEHKGRPF---FPDLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNP 92 (133)
T ss_pred eeeecCCHHHHHHHHHHhcCCch---HHHHHHHHhcCCeEEEEEecCChHHHHHHHhCCCCh
Confidence 46667888899999999999999 99999999999 99999999999999999998883
No 40
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=96.88 E-value=9.8e-05 Score=64.83 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=52.4
Q ss_pred ccCCCCccccCCccccccCCc-hhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHS-EFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++.+...++|.+.++. || |..++.+|.+| |+|++.|.|+|++.|-++|++.|
T Consensus 34 ~k~~~lt~~~a~~~y~~~~~~~~~---~~~l~~~m~sGp~val~l~g~nav~~~r~l~Gpt~p 93 (134)
T cd04412 34 LQMFNLTRANAEEFLEVYKGVVPE---LPAMVDELTSGPCIALEIAGENAVKTFREFCGPFDP 93 (134)
T ss_pred eEeecCCHHHHHHHHHHHcCccch---HHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCh
Confidence 466678889999999999999 99 99999999999 99999999999999999998883
No 41
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=96.79 E-value=0.00021 Score=66.53 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=39.9
Q ss_pred ccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 66 GDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|+-+.++.+| |..++.||.+| ++||+.|.|+|+.-|.++|++.+
T Consensus 82 ~~~~~~~gk~~---~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p 128 (183)
T PRK14544 82 TDDPVEVGKKV---KESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSP 128 (183)
T ss_pred cccccccCCch---hHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCc
Confidence 44445577888 99999999999 99999999999999999999884
No 42
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=96.75 E-value=0.00017 Score=63.09 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=52.5
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-.++....+++|.+.++.|| |..++.+|.+| |+|++.|.|+|+.-|-++|++.+
T Consensus 33 ~k~~~lt~~~a~~fY~~~~~~~~---~~~lv~~m~sgp~v~l~l~~~~av~~~r~l~Gp~~p 91 (132)
T cd04416 33 QKEMVLTEEQAREFYKEHEEEDY---FEDLVEFMTSGPSLILVLSKENAVEEWRELMGPTDP 91 (132)
T ss_pred eeeecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCh
Confidence 46678899999999999999999 99999999999 99999999999999999998873
No 43
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=96.28 E-value=0.00049 Score=60.00 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=50.7
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.=.++.+..+++|.+.++.|| |..++.+|.+| ++|+.+|.|+|++.|-++|++.+
T Consensus 35 k~~~lt~~~a~~~y~~~~~~~~---~~~lv~~m~sgp~~~l~l~g~nav~~~r~l~Gp~~~ 92 (135)
T smart00562 35 KMLQLTEELAEEFYAEHKGKPF---FNDLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDP 92 (135)
T ss_pred eeecCCHHHHHHHHHHhcCCch---HHHHHHHhhcCCeEEEEEecCCHHHHHHHHhCCCCh
Confidence 4456788888899999999999 99999999999 99999999999999999999873
No 44
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=95.93 E-value=0.011 Score=41.70 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=19.7
Q ss_pred hHHHHHH-HHHHHhCCCChHHHHHHHHH
Q psy4316 332 PTLQKGL-AELVRMKPAHSYEWFVNWLL 358 (377)
Q Consensus 332 P~L~~gL-~el~k~rP~dPv~~La~~Ll 358 (377)
+.|++++ .++++++|.|++.|.|+|.-
T Consensus 4 ~~lL~~~~~~vl~~qP~Di~~F~a~yF~ 31 (38)
T PF02197_consen 4 QELLKEFTREVLREQPDDILQFAADYFE 31 (38)
T ss_dssp HHHHHHHHHHHHHH--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 4566665 78999999999999999983
No 45
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=95.44 E-value=0.0011 Score=57.64 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=48.4
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPL 112 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
|.-..+.+..+++|.+.++.+| |..++.+|.+| +.|+.+|.|.|.+-|-++|++.
T Consensus 35 k~~~lt~e~a~~~y~~~~~~~~---~~~lv~~m~sgp~v~l~l~g~~av~~~r~l~Gp~d 91 (135)
T PF00334_consen 35 KMVQLTREEAREFYEEHKGKPF---FDALVDFMSSGPSVALVLEGENAVEKWRQLCGPTD 91 (135)
T ss_dssp EEEEETHHHHHHHTGGGTTSTT---HHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SS
T ss_pred hhhhhhHHHHheEEEeecCCcc---eecccceeecCCcEEEEeecchhhHHHHHhcCCcc
Confidence 4556777888899999999998 99999999999 9999999999999999999887
No 46
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=94.74 E-value=0.051 Score=37.94 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHc
Q psy4316 331 YPTLQKGLAELVRMKPAHSYEWFVNWLLEN 360 (377)
Q Consensus 331 ~P~L~~gL~el~k~rP~dPv~~La~~Ll~n 360 (377)
.+.|..-..++++.+|.||++|.|+|+-+-
T Consensus 4 ~~~L~~~~~~vl~~qP~d~~~f~~~yF~kL 33 (38)
T smart00394 4 QALLEDLTVEVLRAQPSDLVQFAADYFEKL 33 (38)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 344455556799999999999999999543
No 47
>PTZ00378 hypothetical protein; Provisional
Probab=87.49 E-value=0.7 Score=49.47 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=38.0
Q ss_pred hhHhhhhhh-cchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCC
Q psy4316 320 LAHKIYLRE-FVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP 362 (377)
Q Consensus 320 ~~~r~YL~~-~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP 362 (377)
..-++|+++ .+--+|.+++.+|.+.||.||..+||.|+.+.-.
T Consensus 4 ~~~~~y~~~~~~~~~l~ea~~~~v~~~~~d~~~~l~~~f~~~~~ 47 (518)
T PTZ00378 4 VSWKRYDDEFKLSGILTEAARSCVDAHPARPKEYLAAYFREKCS 47 (518)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcC
Confidence 456889988 7889999999999999999999999999987643
No 48
>KOG4109|consensus
Probab=84.17 E-value=0.5 Score=41.27 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=45.0
Q ss_pred chhhHhhhhhhcchhHHHHHHHHHHHhCCCCh-----HHHHHHHHHHcCCCCCCCC
Q psy4316 318 SFLAHKIYLREFVYPTLQKGLAELVRMKPAHS-----YEWFVNWLLENDPFSPKLK 368 (377)
Q Consensus 318 s~~~~r~YL~~~v~P~L~~gL~el~k~rP~dP-----v~~La~~Ll~nNP~~p~~~ 368 (377)
+..++++|+.+..-|.|+.|...+++.+|..| +.+|+..+...+-+..+..
T Consensus 3 ~~~pa~~~~~~~et~~l~ng~s~~a~n~~~~~~~t~sv~~l~q~~~~~~a~~~k~k 58 (116)
T KOG4109|consen 3 SSSPARQYLPEAETPVLLNGMSIAARNPPEEPGSTQSVNFLSQNLKIANANQQKPK 58 (116)
T ss_pred ccccccccCccccchhhhhhhhhhccCCccccccccchHHhhhhhhhhhhhhcCcc
Confidence 46789999999999999999999999999998 9999999988876655543
No 49
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.86 E-value=56 Score=30.49 Aligned_cols=47 Identities=13% Similarity=0.351 Sum_probs=39.6
Q ss_pred ccceEEEEEcCccccchHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcc
Q psy4316 161 CYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFI 209 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~ 209 (377)
....++++++|..+..+.+|.+.|.+.-..+++++ .|++++|++...
T Consensus 71 ~~~s~iv~~ePr~yeda~~ia~~lk~~k~Vvinl~--~m~~~qArRivD 117 (167)
T COG1799 71 QDSSKIVLLEPRKYEDAQEIADYLKNRKAVVINLQ--RMDPAQARRIVD 117 (167)
T ss_pred CCceEEEEecCccHHHHHHHHHHHhcCceEEEEee--eCCHHHHHHHHH
Confidence 45689999999999999999999988777776665 569999998764
No 50
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=36.02 E-value=30 Score=27.64 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=24.2
Q ss_pred eecCHHHHHHhcccccccCCCCcccccceeecCcEE
Q psy4316 197 FKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVR 232 (377)
Q Consensus 197 v~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvV 232 (377)
-.+|++++++||+ - .|+.|...--+||.+
T Consensus 21 p~~spe~V~dfYs--~-----~YPeLttA~v~gP~~ 49 (66)
T TIGR03738 21 PAMSPEQVRDFYS--A-----QYPELLNAEVEGPVV 49 (66)
T ss_pred CCCCHHHHHHHHh--c-----cCchheeeeeeCCeE
Confidence 3689999999998 3 389999888889876
No 51
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=25.46 E-value=53 Score=26.08 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=23.5
Q ss_pred ecCHHHHHHhcccccccCCCCcccccceeecCcEE
Q psy4316 198 KFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVR 232 (377)
Q Consensus 198 ~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvV 232 (377)
.|+++++++||+ -. |+.|...-..||.+
T Consensus 23 ~~spe~V~~~ya--~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYA--AQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHh--hh-----ChhhheeeecCCeE
Confidence 689999999998 33 89998888888875
No 52
>PF09230 DFF40: DNA fragmentation factor 40 kDa; InterPro: IPR015311 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. DNA fragmentation factor (DFF) is a complex of the DNase DFF40 (CAD) and its chaperone/inhibitor DFF45 (ICAD-L). In its inactive form, DFF is a heterodimer composed of a 45kDa chaperone inhibitor subunit (DFF45 or ICAD), and a 40kDa latent endonuclease subunit (DFF40 or CAD). Upon caspase-3 cleavage of DFF45, DFF40 forms active endonuclease homo-oligomers. It is activated during apoptosis to induce DNA fragmentation. DNA binding by DFF is mediated by the nuclease subunit, which can also form stable DNA complexes after release from DFF [, ]. The nuclease subunit is inhibited in DNA cleavage but not in DNA binding []. DFF45 can also be cleaved and inactivated by caspase-7 but not by caspase-6 and caspase-8. The cleaved DFF45 fragments dissociate from DFF40, allowing DFF40 to oligomerise, forming a large complex that cleaves DNA by introducing double strand breaks. Histone H1 confers DNA binding ability to DFF and stimulates the nuclease activity of DFF40 [].; GO: 0016787 hydrolase activity, 0006309 DNA fragmentation involved in apoptotic nuclear change, 0005634 nucleus, 0005737 cytoplasm; PDB: 1V0D_A.
Probab=24.72 E-value=86 Score=30.66 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=31.8
Q ss_pred HHHHHhccCCCcccccCCcccccccCCCCCchhhHhhhhhhcchhHHHHHHHHHHHhCCCChHHHHHH
Q psy4316 288 ARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVN 355 (377)
Q Consensus 288 ~rEi~fFFp~~~~epi~~~~~~~s~e~~~~s~~~~r~YL~~~v~P~L~~gL~el~k~rP~dPv~~La~ 355 (377)
.||-.++|..=.++=+.. ..++|+|+|++++.++.+.+-.|...|...
T Consensus 151 srEsrILFsTWNLDH~IE--------------------k~RtIlP~l~~ai~~~~~~~ev~~~yfy~l 198 (230)
T PF09230_consen 151 SRESRILFSTWNLDHRIE--------------------KSRTILPTLVEAIKECQDGREVDWEYFYSL 198 (230)
T ss_dssp -HHHHHHTTTSEEEESS---------------------TTTTHHHHHHHHHHH---SS-B-HHHHHHH
T ss_pred chHHhHHHHhhcccchhH--------------------HHhhHHHHHHHHHHHhhccccccHHHHHHH
Confidence 478888898766666554 467999999999999998887676665543
No 53
>KOG3793|consensus
Probab=22.05 E-value=1.3e+02 Score=30.59 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHhCCC-Ch-----HHHHHHHHHHcCCCCCCCC
Q psy4316 331 YPTLQKGLAELVRMKPA-HS-----YEWFVNWLLENDPFSPKLK 368 (377)
Q Consensus 331 ~P~L~~gL~el~k~rP~-dP-----v~~La~~Ll~nNP~~p~~~ 368 (377)
+..|++-|.++-..-|. .| ++.||.|-+.|||+++++.
T Consensus 207 ~~~lir~LKDlr~r~~~F~PLs~W~ldll~h~avmNnp~RQ~l~ 250 (362)
T KOG3793|consen 207 VKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLA 250 (362)
T ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHcCCccccch
Confidence 56777888888777766 55 6889999999999998864
No 54
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=21.05 E-value=97 Score=24.91 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhCCCCh-HHHHHHHHHHcCCCC
Q psy4316 332 PTLQKGLAELVRMKPAHS-YEWFVNWLLENDPFS 364 (377)
Q Consensus 332 P~L~~gL~el~k~rP~dP-v~~La~~Ll~nNP~~ 364 (377)
.+.+..| .++...|.+| ++--.+||++|.++|
T Consensus 77 ~~~~~~l-~~~~~~~~~~~~~r~~~wi~~~~~~~ 109 (109)
T PF13243_consen 77 AAAIAAL-ALAGVYPDDEAVERGLEWILSHQLDK 109 (109)
T ss_dssp HHHHHHH-HHHHTT--HHHHHHHHHHHHHH----
T ss_pred HHHHHHH-HHhCCCCCCHHHHHHHHHHHHccCCC
Confidence 4554555 6677777765 788899999998765
Done!