Query psy4316
Match_columns 377
No_of_seqs 261 out of 1212
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:26:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 2.3E-46 7.9E-51 330.7 12.0 136 160-300 5-142 (145)
2 3ztp_A Nucleoside diphosphate 100.0 2.5E-46 8.4E-51 329.2 11.7 136 162-299 3-140 (142)
3 3evo_A NDP kinase, NDK, nucleo 100.0 1.1E-45 3.8E-50 326.6 11.9 137 161-302 5-144 (146)
4 3fkb_A NDP kinase, NDK, nucleo 100.0 9.6E-45 3.3E-49 323.5 12.5 141 160-305 6-148 (155)
5 3q8u_A Nucleoside diphosphate 100.0 9.4E-45 3.2E-49 324.2 12.2 139 162-305 1-141 (157)
6 3mpd_A Nucleoside diphosphate 100.0 9.9E-45 3.4E-49 322.1 12.3 135 161-300 4-141 (151)
7 1wkj_A Nucleoside diphosphate 100.0 8.7E-45 3E-49 317.5 11.7 133 162-299 1-135 (137)
8 1k44_A Nucleoside diphosphate 100.0 1.6E-44 5.5E-49 315.5 12.4 131 162-297 2-135 (136)
9 4fkx_A NDK B, nucleoside dipho 100.0 1.5E-44 5E-49 324.1 12.3 139 161-304 10-150 (161)
10 2hur_A NDK, nucleoside diphosp 100.0 2.2E-44 7.4E-49 316.8 12.6 135 162-301 2-138 (142)
11 3r9l_A Nucleoside diphosphate 100.0 1.3E-44 4.5E-49 322.6 10.7 139 161-304 6-146 (155)
12 1nhk_R Nucleoside diphosphate 100.0 3.4E-44 1.2E-48 316.4 12.5 135 162-301 2-138 (144)
13 1u8w_A Nucleoside diphosphate 100.0 3.5E-44 1.2E-48 317.8 11.9 134 162-300 1-136 (149)
14 3l7u_A Nucleoside diphosphate 100.0 3.3E-44 1.1E-48 324.7 12.0 140 161-305 23-164 (172)
15 1pku_A Nucleoside diphosphate 100.0 4E-44 1.4E-48 317.8 12.3 134 162-300 2-137 (150)
16 2vu5_A Nucleoside diphosphate 100.0 3.4E-44 1.2E-48 317.5 11.6 137 162-303 1-139 (148)
17 1xiq_A Nucleoside diphosphate 100.0 7.9E-44 2.7E-48 318.2 12.9 139 160-303 7-147 (157)
18 1s57_A Nucleoside diphosphate 100.0 9.5E-44 3.3E-48 316.3 12.6 138 161-303 4-143 (153)
19 3bbb_A Nucleoside diphosphate 100.0 1E-43 3.4E-48 315.5 12.1 135 162-301 3-139 (151)
20 1nb2_A Nucleoside diphosphate 100.0 5.4E-44 1.8E-48 317.0 10.1 137 162-303 2-140 (150)
21 3js9_A Nucleoside diphosphate 100.0 1.5E-43 5E-48 316.1 12.2 141 160-305 7-149 (156)
22 1ehw_A NDPK H4, nucleoside dip 100.0 1.7E-43 5.8E-48 317.5 12.2 134 161-299 23-158 (162)
23 3b54_A NDK, NDP kinase, nucleo 100.0 1.3E-43 4.6E-48 317.8 11.5 139 160-303 11-151 (161)
24 2dxe_A Nucleoside diphosphate 100.0 3.4E-43 1.2E-47 314.9 11.8 137 162-303 7-148 (160)
25 1zs6_A Nucleoside diphosphate 100.0 4.3E-43 1.5E-47 316.7 11.9 138 160-302 19-158 (169)
26 1w7w_A Nucleoside diphosphate 100.0 5E-43 1.7E-47 319.6 12.0 138 160-302 30-169 (182)
27 2az3_A Nucleoside diphosphate 100.0 7.6E-43 2.6E-47 313.8 12.1 139 161-304 7-149 (164)
28 4dz6_A Nucleoside diphosphate 100.0 9.2E-43 3.2E-47 319.6 9.9 143 160-305 24-181 (190)
29 1xqi_A Nucleoside diphosphate 100.0 4.8E-40 1.7E-44 302.7 7.9 137 161-300 14-193 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 8.9E-30 3E-34 252.4 12.5 112 160-298 233-346 (352)
31 3g36_A Protein DPY-30 homolog; 99.7 4.6E-18 1.6E-22 127.7 4.3 48 318-365 5-52 (55)
32 3evo_A NDP kinase, NDK, nucleo 98.4 1.5E-08 5.2E-13 89.3 -2.0 55 56-113 42-99 (146)
33 4fkx_A NDK B, nucleoside dipho 98.4 2.2E-08 7.6E-13 89.7 -2.2 56 55-113 46-103 (161)
34 3r9l_A Nucleoside diphosphate 98.3 4.6E-08 1.6E-12 87.1 -0.6 57 54-113 41-99 (155)
35 3mpd_A Nucleoside diphosphate 98.3 2.9E-08 9.9E-13 88.0 -2.3 56 55-113 40-97 (151)
36 3fkb_A NDP kinase, NDK, nucleo 98.3 3.6E-08 1.2E-12 87.8 -2.3 58 54-114 42-101 (155)
37 4hr2_A Nucleoside diphosphate 98.3 3E-08 1E-12 87.4 -2.8 69 54-139 41-111 (145)
38 1nb2_A Nucleoside diphosphate 98.3 6.4E-08 2.2E-12 85.6 -1.1 57 54-113 36-94 (150)
39 3l7u_A Nucleoside diphosphate 98.3 4.8E-08 1.6E-12 88.4 -2.1 56 55-113 59-116 (172)
40 3js9_A Nucleoside diphosphate 98.3 4E-08 1.4E-12 87.5 -2.7 57 55-114 44-102 (156)
41 3q8u_A Nucleoside diphosphate 98.3 5.5E-08 1.9E-12 86.8 -2.2 56 55-113 36-93 (157)
42 2vu5_A Nucleoside diphosphate 98.2 6E-08 2E-12 85.6 -2.0 56 55-113 36-93 (148)
43 3bbb_A Nucleoside diphosphate 98.2 6.4E-08 2.2E-12 85.7 -2.2 56 55-113 38-95 (151)
44 1wkj_A Nucleoside diphosphate 98.2 6.6E-08 2.2E-12 84.2 -2.4 56 55-113 36-93 (137)
45 1k44_A Nucleoside diphosphate 98.2 6.5E-08 2.2E-12 84.2 -2.6 57 55-114 37-95 (136)
46 1nhk_R Nucleoside diphosphate 98.2 6.5E-08 2.2E-12 85.0 -2.9 56 55-113 37-94 (144)
47 2hur_A NDK, nucleoside diphosp 98.2 6.6E-08 2.3E-12 84.8 -2.9 56 55-113 37-94 (142)
48 1pku_A Nucleoside diphosphate 98.2 8E-08 2.8E-12 85.0 -2.4 56 55-113 37-94 (150)
49 1s57_A Nucleoside diphosphate 98.2 7.3E-08 2.5E-12 85.5 -2.7 56 55-113 40-97 (153)
50 1u8w_A Nucleoside diphosphate 98.2 9.1E-08 3.1E-12 84.5 -2.2 56 55-113 36-93 (149)
51 1xiq_A Nucleoside diphosphate 98.2 8.5E-08 2.9E-12 85.5 -2.7 56 55-113 44-101 (157)
52 2az3_A Nucleoside diphosphate 98.2 1.1E-07 3.8E-12 85.3 -2.1 57 55-114 43-101 (164)
53 1ehw_A NDPK H4, nucleoside dip 98.2 1.1E-07 3.6E-12 85.3 -2.4 56 55-113 59-116 (162)
54 1zs6_A Nucleoside diphosphate 98.2 1.2E-07 4.1E-12 85.5 -2.1 57 54-113 55-113 (169)
55 3b54_A NDK, NDP kinase, nucleo 98.1 1E-07 3.5E-12 85.3 -3.2 58 54-114 47-106 (161)
56 3ztp_A Nucleoside diphosphate 98.1 6.5E-08 2.2E-12 84.8 -4.5 56 55-113 38-95 (142)
57 2dxe_A Nucleoside diphosphate 98.1 1.2E-07 4E-12 84.8 -3.0 56 55-113 42-99 (160)
58 1w7w_A Nucleoside diphosphate 98.1 1.6E-07 5.6E-12 85.5 -2.0 105 6-113 13-124 (182)
59 4dz6_A Nucleoside diphosphate 98.0 2.2E-07 7.6E-12 85.2 -3.4 56 55-113 61-123 (190)
60 1xqi_A Nucleoside diphosphate 97.5 3.9E-06 1.3E-10 77.2 -4.0 41 70-113 98-140 (195)
61 4f9k_A CAMP-dependent protein 96.8 0.001 3.5E-08 54.7 4.0 39 321-359 39-78 (95)
62 3bh7_B Protein XRP2; protein-p 96.3 0.00019 6.4E-09 71.3 -3.6 93 26-134 237-335 (352)
63 2izx_A CAMP-dependent protein 94.2 0.058 2E-06 37.2 4.2 28 332-359 9-36 (41)
64 2kyg_A CAMP-dependent protein 93.8 0.069 2.4E-06 38.6 4.2 32 328-359 13-44 (50)
65 2izy_A CAMP-dependent protein 93.6 0.061 2.1E-06 39.7 3.8 31 329-359 9-39 (54)
66 4din_B CAMP-dependent protein 85.2 0.0046 1.6E-07 60.2 -11.1 46 319-364 15-61 (381)
67 3p04_A Uncharacterized BCR; SE 45.6 15 0.00053 29.3 3.2 45 163-209 4-48 (87)
68 2jxc_B Stonin-2, stoned B; end 35.0 25 0.00087 24.7 2.5 35 49-83 4-43 (45)
69 2z14_A EF-hand domain-containi 25.7 36 0.0012 29.0 2.5 52 120-175 45-111 (133)
70 1v18_B APC protein, adenomatou 22.3 38 0.0013 24.1 1.6 24 47-70 13-36 (47)
71 3fgx_A Rbstp2171; structural g 21.5 5 0.00017 33.9 -3.6 83 263-351 11-94 (114)
72 3n75_A LDC, lysine decarboxyla 21.1 7.6E+02 0.026 26.2 12.4 42 164-209 2-47 (715)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=2.3e-46 Score=330.71 Aligned_cols=136 Identities=31% Similarity=0.477 Sum_probs=131.6
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
..+|+||+||||||+++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+||||+||+|+
T Consensus 5 m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvva~vle 82 (145)
T 4hr2_A 5 MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYA--VHAERPFFKDLVEFMISGPVMIQVLE 82 (145)
T ss_dssp CCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred chHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HHhcCchHHHHHHHhcCCCEEEEEEE
Confidence 34799999999999987 799999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII 300 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ 300 (377)
|+|||+.||+|+|||||..| .|+|||++||.+..+|+||||||+++|++||.||||+..+
T Consensus 83 g~~aV~~~R~l~G~tdp~~A---~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~ei 142 (145)
T 4hr2_A 83 GEDAILKNRDLMGATDPKKA---EKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNV 142 (145)
T ss_dssp EETHHHHHHHHHCCSSTTTS---CTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGGC
T ss_pred cCCcHhHHhhccCCCCcccC---CCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhhc
Confidence 99999999999999999999 6999999999999999999999999999999999998655
No 2
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=2.5e-46 Score=329.18 Aligned_cols=136 Identities=38% Similarity=0.605 Sum_probs=132.9
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+||||+||+|+|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~--~~~~kpff~~Lv~~mtSGPvva~vl~g~ 80 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYY--VHRERPFFQELVEFMSSGPVVAAVLEGE 80 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHH--HhcCCchHHHHHHHhcCCCEEEEEEeCC
Confidence 699999999999986 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII 299 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~ 299 (377)
|||+.||+++|||||..|+..+|+|||++||.+..+|+||||||+++|.+||.||||+..
T Consensus 81 naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e 140 (142)
T 3ztp_A 81 DAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGLE 140 (142)
T ss_dssp THHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCccc
Confidence 999999999999999999999999999999999999999999999999999999999754
No 3
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=1.1e-45 Score=326.58 Aligned_cols=137 Identities=27% Similarity=0.395 Sum_probs=128.2
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeec-CHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKF-TPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~L-s~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
.+|+||+|||||++++ +|+||++|+++||.|+++||++| |+++|++||. +|++++||+.|++||+||||+||+|+
T Consensus 5 ~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vle 82 (146)
T 3evo_A 5 GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYK--EHSEQSYFNDNCDFMVSGPIISIVYE 82 (146)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred cceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHH--HHcCCccHHHHHHHHhcCCeEEEEEe
Confidence 4799999999999986 79999999999999999999999 9999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP 302 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep 302 (377)
|+|||+.||+|||||||..| +|+|||++||.+..+|+||||||+++|.+||.||||...++|
T Consensus 83 g~naV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~ 144 (146)
T 3evo_A 83 GTDAISKIRRLQGNTNPLAS---APGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKMET 144 (146)
T ss_dssp ETTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC------
T ss_pred CCCHHHHHHHHcCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcCC
Confidence 99999999999999999999 899999999999999999999999999999999999887765
No 4
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=9.6e-45 Score=323.48 Aligned_cols=141 Identities=28% Similarity=0.379 Sum_probs=134.4
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
..+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+||||+||+|+
T Consensus 6 ~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvle 83 (155)
T 3fkb_A 6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYA--EHKERPFFGGLVSFITSGPVVAMVFE 83 (155)
T ss_dssp CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred cccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCchHHHHHHHhcCCCEEEEEEe
Confidence 34799999999999986 799999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA 305 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~ 305 (377)
|+|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.|||.+||++..+.+...
T Consensus 84 g~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 148 (155)
T 3fkb_A 84 GKGVVASARLMIGVTNPLAS---APGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVK 148 (155)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCSCCC
T ss_pred CCCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccc
Confidence 99999999999999999988 899999999999999999999999999999999999876655543
No 5
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=9.4e-45 Score=324.16 Aligned_cols=139 Identities=27% Similarity=0.434 Sum_probs=133.6
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+|+
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~ 78 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYG--EHQGKPFYNDLISFITSAPVFAMVVEGE 78 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHCCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 489999999999986 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA 305 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~ 305 (377)
|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.|||++..+.....
T Consensus 79 naV~~~R~l~GpTdp~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 141 (157)
T 3q8u_A 79 DAVNVSRHIIGSTNPSEA---SPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYAS 141 (157)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred CHHHHHHHHcCCCChhhc---CCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhccccc
Confidence 999999999999999999 799999999999999999999999999999999999877765544
No 6
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=9.9e-45 Score=322.13 Aligned_cols=135 Identities=27% Similarity=0.354 Sum_probs=129.8
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 238 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G 238 (377)
.+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.||+||+||||+||+|+|
T Consensus 4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg 81 (151)
T 3mpd_A 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYS--HLSSMPFFSEMVEDMMSGMVLAMVWVG 81 (151)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHH--HHcCCccHHHHHHHhcCCCEEEEEEeC
Confidence 3799999999999986 899999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccC-CCcc
Q psy4316 239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFK-DIII 300 (377)
Q Consensus 239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp-~~~~ 300 (377)
+|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.+||.|||+ +..+
T Consensus 82 ~naV~~~R~l~G~t~p~~a---~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~ 141 (151)
T 3mpd_A 82 KDAVSIGRKLIGETNPQAA---SVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQP 141 (151)
T ss_dssp TTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCC
T ss_pred CcHHHHHHHHhCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchh
Confidence 9999999999999999988 899999999999999999999999999999999998 5444
No 7
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=8.7e-45 Score=317.53 Aligned_cols=133 Identities=32% Similarity=0.509 Sum_probs=129.4
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtsGPvva~vl~g~ 78 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYA--EHREKPFFPGLVRFITSGPVVAMVLEGP 78 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGSSSSSHHHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEeCC
Confidence 489999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII 299 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~ 299 (377)
|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.+||.+||++..
T Consensus 79 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e 135 (137)
T 1wkj_A 79 GVVAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEE 135 (137)
T ss_dssp THHHHHHHHHCCSSTTTC---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGG
T ss_pred cHHHHHHHHhCCCCCCcC---CCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChhh
Confidence 999999999999999999 899999999999999999999999999999999998754
No 8
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=1.6e-44 Score=315.50 Aligned_cols=131 Identities=28% Similarity=0.457 Sum_probs=128.3
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYA--EHEGKPFFGSLLEFITSGPVVAAIVEGT 79 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHTTTSCEEEEEEEET
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhccCCEEEEEEeCC
Confidence 589999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChh-hhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCC
Q psy4316 240 KAIRRWLHLMGPVDPD-KAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKD 297 (377)
Q Consensus 240 NAV~~wReLiGPtdP~-~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~ 297 (377)
|||+.||+++|||||. .| .|+|||++||.+..+|+||||||+++|.+||.+||++
T Consensus 80 ~aV~~~R~l~G~t~p~~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 80 RAIAAVRQLAGGTDPVQAA---APGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG 135 (136)
T ss_dssp THHHHHHHHHCCSSTTTTS---CTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHhCCCCccccC---CCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCC
Confidence 9999999999999999 88 8999999999999999999999999999999999986
No 9
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=1.5e-44 Score=324.07 Aligned_cols=139 Identities=29% Similarity=0.408 Sum_probs=132.8
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 238 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G 238 (377)
..|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.||+||+||||+||+|+|
T Consensus 10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 87 (161)
T 4fkx_A 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYI--DLASKPFYSGLVSYFSSGPIVGMVWEG 87 (161)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCccHHHHHHHHhCCCcEEEEEec
Confidence 3689999999999986 799999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316 239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSN 304 (377)
Q Consensus 239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~ 304 (377)
+|||+.||+|+|||||..| +|+|||++||.+..+|+||||||+++|.|||.|||++..+....
T Consensus 88 ~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~ 150 (161)
T 4fkx_A 88 LGVVKGGRVLLGATNPADS---LPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWT 150 (161)
T ss_dssp TTHHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCC
T ss_pred cChHHHHHHHhcCCChhhc---CCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhccccc
Confidence 9999999999999999988 89999999999999999999999999999999999876655443
No 10
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=2.2e-44 Score=316.82 Aligned_cols=135 Identities=34% Similarity=0.507 Sum_probs=130.9
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYA--EHDGKPFFDGLVEFMTSGPIVVSVLEGE 79 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCchHHHHHHhcCCCEEEEEEecc
Confidence 489999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIE 301 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~e 301 (377)
|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+||+...+.
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 138 (142)
T 2hur_A 80 NAVQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVC 138 (142)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCSC
T ss_pred cHHHHHHHHhCCCCcccC---CCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhhh
Confidence 999999999999999998 89999999999999999999999999999999999976554
No 11
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=1.3e-44 Score=322.56 Aligned_cols=139 Identities=27% Similarity=0.418 Sum_probs=104.9
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 238 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G 238 (377)
.+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.||+||+||||+||+|+|
T Consensus 6 ~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg 83 (155)
T 3r9l_A 6 ARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYK--EHAARPFFAGLCKFLSSGPVCAMVWEG 83 (155)
T ss_dssp CSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC-----------------------------CCSCCEEEEEES
T ss_pred chheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCccHHHHHHHhcCCCEEEEEEeC
Confidence 3699999999999986 899999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316 239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSN 304 (377)
Q Consensus 239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~ 304 (377)
+|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.+||.|||++..+....
T Consensus 84 ~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~ 146 (155)
T 3r9l_A 84 ANVVSISRTMMGVTKPAES---APGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWS 146 (155)
T ss_dssp TTHHHHHHHHHCCSCTTTC---CTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTCC---
T ss_pred CCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhccccc
Confidence 9999999999999999988 89999999999999999999999999999999999987665544
No 12
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=3.4e-44 Score=316.35 Aligned_cols=135 Identities=28% Similarity=0.456 Sum_probs=130.8
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYA--VHKARPFFKDLVQFMISGPVVLMVLEGE 79 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhccCCEEEEEEecc
Confidence 589999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIE 301 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~e 301 (377)
|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+||+...+.
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 138 (144)
T 1nhk_R 80 NAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIH 138 (144)
T ss_dssp THHHHHHHHHCCSSGGGC---CTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCC
T ss_pred CHHHHHHHHhCCCCCCcC---CCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhhc
Confidence 999999999999999998 89999999999999999999999999999999999976554
No 13
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=3.5e-44 Score=317.85 Aligned_cols=134 Identities=24% Similarity=0.405 Sum_probs=129.6
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+|+
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~~~~kpff~~Lv~~mtSGPvva~vleg~ 78 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYE--DLSSKSFFSGLVDYIVSGPVVAMIWEGK 78 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTC--TTSSSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCcchhHHhHhcCCCEEEEEEecC
Confidence 489999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII 300 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ 300 (377)
|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.+||.+|||+.+.
T Consensus 79 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~e~~ 136 (149)
T 1u8w_A 79 NVVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPV 136 (149)
T ss_dssp THHHHHHHHHCCSSTTTC---CTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHCTTCCC
T ss_pred CchHHHHHHhCCCCcccC---CCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhCchhhc
Confidence 999999999999999998 8999999999999999999999999999999999976543
No 14
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=324.75 Aligned_cols=140 Identities=25% Similarity=0.397 Sum_probs=133.9
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 238 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G 238 (377)
.+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+|
T Consensus 23 ~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg 100 (172)
T 3l7u_A 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYV--DLKDRPFFAGLVKYMHSGPVVAMVWEG 100 (172)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHHSSCEEEEEEES
T ss_pred hhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCeEEEEEeC
Confidence 4799999999999987 799999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316 239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA 305 (377)
Q Consensus 239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~ 305 (377)
+|||+.||+|||||||..| +|+|||++||.+..+|+||||||+++|.+||.|||++..+.....
T Consensus 101 ~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~~~~~~ 164 (172)
T 3l7u_A 101 LNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTS 164 (172)
T ss_dssp TTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGSCCCCC
T ss_pred CCHHHHHHHHcCCCChhhc---CCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhcccccc
Confidence 9999999999999999988 799999999999999999999999999999999999876655543
No 15
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=4e-44 Score=317.80 Aligned_cols=134 Identities=26% Similarity=0.438 Sum_probs=129.7
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vleg~ 79 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYA--DLSDKPFFPGLVEYIISGPVVAMVWEGK 79 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSG--GGTTSTTHHHHHHHHHSSCEEEEEEEST
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCccHHHHHHhcCCCEEEEEEecc
Confidence 589999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIII 300 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ 300 (377)
|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+|||+.++
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~e~~ 137 (150)
T 1pku_A 80 DVVATGRRIIGATRPWEA---APGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLA 137 (150)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHCTTCCC
T ss_pred chHHHHHHHhCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCcHHhc
Confidence 999999999999999998 8999999999999999999999999999999999976543
No 16
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=3.4e-44 Score=317.49 Aligned_cols=137 Identities=31% Similarity=0.496 Sum_probs=131.5
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vleg~ 78 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYA--EHEEKPFFGELVDFITSGPVFAMVWQGE 78 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGG--GTTTCTHHHHHHHHHTTCCEEEEEEEST
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecc
Confidence 489999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS 303 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi 303 (377)
|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus 79 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 139 (148)
T 2vu5_A 79 GVVDTARNMMGKTRPHEA---APGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDY 139 (148)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGSCCC
T ss_pred ChHHHHHHHhCCCCcccc---CCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhcccc
Confidence 999999999999999997 8999999999999999999999999999999999997665433
No 17
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=7.9e-44 Score=318.18 Aligned_cols=139 Identities=24% Similarity=0.390 Sum_probs=132.1
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
..+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+
T Consensus 7 ~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle 84 (157)
T 1xiq_A 7 HHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYK--ELSDQPFFKNLVAYISKGPVVAMVWE 84 (157)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGSSSSSCTTHHHHHTTSCEEEEEEE
T ss_pred chhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHHcCCCEEEEEEe
Confidence 34799999999999988 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS 303 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi 303 (377)
|+|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus 85 g~naV~~~R~l~G~T~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 147 (157)
T 1xiq_A 85 GVDMVKQGRKLIGETNPLTS---NTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQW 147 (157)
T ss_dssp STTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCC
T ss_pred cccchHHHHHHcCCCCCCcC---CCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCccccccc
Confidence 99999999999999999999 8999999999999999999999999999999999997665433
No 18
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=9.5e-44 Score=316.27 Aligned_cols=138 Identities=28% Similarity=0.413 Sum_probs=132.5
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 238 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G 238 (377)
.+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+|
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 81 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYK--DLSAKSFFPNLIEYITSGPVVCMAWEG 81 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSSSHHHHHHHHTSSCEEEEEEEE
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHH--HhcCCCcchhHHHHhcCCCEEEEEEec
Confidence 4699999999999988 899999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316 239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS 303 (377)
Q Consensus 239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi 303 (377)
+|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus 82 ~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 143 (153)
T 1s57_A 82 VGVVASARKLIGKTDPLQA---EPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKW 143 (153)
T ss_dssp TTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCC
T ss_pred ccHHHHHHHHhCCCCcccc---CCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhcccc
Confidence 9999999999999999999 7999999999999999999999999999999999998765433
No 19
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=1e-43 Score=315.52 Aligned_cols=135 Identities=27% Similarity=0.454 Sum_probs=130.6
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||+++++++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 3 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~ 80 (151)
T 3bbb_A 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI--DLKDRPFFPGLVKYMNSGPVVAMVWEGL 80 (151)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCchHHHHHHHccCCEEEEEEecC
Confidence 699999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIE 301 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~e 301 (377)
|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+||++..+.
T Consensus 81 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 139 (151)
T 3bbb_A 81 NVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELV 139 (151)
T ss_dssp THHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSC
T ss_pred CHHHHHHHHhCCCCcccC---CCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhcc
Confidence 999999999999999998 69999999999999999999999999999999999876553
No 20
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=5.4e-44 Score=316.95 Aligned_cols=137 Identities=28% Similarity=0.368 Sum_probs=131.7
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
+|+||+|||||++++ +|+||++|+++||.|+++||++|++++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYA--ELGGGPFFGGLVGGATSGPVFAMVWEGL 79 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTC--TTSSSTTHHHHHHHHTSSCCBEEEEEST
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecC
Confidence 589999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS 303 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi 303 (377)
|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus 80 naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 140 (150)
T 1nb2_A 80 NAAATARQILGATNPSDA---APGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASG 140 (150)
T ss_dssp THHHHHHHHHCCSSTTSS---CTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCC
T ss_pred CHHHHHHHHhCCCCcccC---CCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCccccccc
Confidence 999999999999999997 8999999999999999999999999999999999997665433
No 21
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.5e-43 Score=316.14 Aligned_cols=141 Identities=24% Similarity=0.366 Sum_probs=133.4
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
..+|+|++|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+
T Consensus 7 ~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~--~h~~kpff~~Lv~fmtSGPvvamvle 84 (156)
T 3js9_A 7 HHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYC--EHKDKPFFKDLCDFISHGPVFCMIWE 84 (156)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHHHCCEEEEEEE
T ss_pred cchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCCEEEEEe
Confidence 34799999999999987 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccccCC
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNA 305 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi~~ 305 (377)
|+|||+.||+++|||||..| .|+|||++||++..+|+||||||+++|.+||.|||++..+.+...
T Consensus 85 g~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~ 149 (156)
T 3js9_A 85 GPEAIKIGRNLVGLTSPVES---AAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWER 149 (156)
T ss_dssp ETTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGCCCCCC
T ss_pred ccchHHHHHHhcCCCCcccc---CCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhcccccc
Confidence 99999999999999999998 799999999999999999999999999999999999876655443
No 22
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.7e-43 Score=317.47 Aligned_cols=134 Identities=31% Similarity=0.450 Sum_probs=129.8
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 238 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G 238 (377)
..|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.||+||+||||+||+|+|
T Consensus 23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 100 (162)
T 1ehw_A 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQ--DLRRKPFYPALIRYMSSGPVVAMVWEG 100 (162)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEec
Confidence 4699999999999987 799999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCc
Q psy4316 239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDII 299 (377)
Q Consensus 239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~ 299 (377)
+|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+||++..
T Consensus 101 ~naV~~~R~l~G~T~p~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e 158 (162)
T 1ehw_A 101 YNVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSE 158 (162)
T ss_dssp TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGG
T ss_pred hhHHHHHHHHhCCCCCCCC---CCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhh
Confidence 9999999999999999998 899999999999999999999999999999999997643
No 23
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-43 Score=317.83 Aligned_cols=139 Identities=24% Similarity=0.397 Sum_probs=125.9
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
...|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+
T Consensus 11 ~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle 88 (161)
T 3b54_A 11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYA--EHVGKPFFPKMVSFMKSGPILATVWE 88 (161)
T ss_dssp CCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC---------CHHHHHHHHSSCEEEEEEE
T ss_pred cccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHhcCCCEEEEEEe
Confidence 34799999999999987 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPS 303 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~epi 303 (377)
|+|||+.||+++|||||..| +|+|||++||.+..+|+||||||+++|.+||.+||++..+...
T Consensus 89 g~naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 151 (161)
T 3b54_A 89 GKDVVRQGRTILGATNPLGS---APGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDW 151 (161)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTCCCC
T ss_pred ccChHHHHHHHhCCCCcccC---CCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhcccc
Confidence 99999999999999999998 8999999999999999999999999999999999998665433
No 24
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=3.4e-43 Score=314.85 Aligned_cols=137 Identities=31% Similarity=0.437 Sum_probs=131.6
Q ss_pred cceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEeec
Q psy4316 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 239 (377)
Q Consensus 162 ~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G~ 239 (377)
.|+||+|||||++++ +|+||++|+++||+|+++||++||+++|++||. +|++++||+.|++||+||||+||+|+|+
T Consensus 7 ~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~ 84 (160)
T 2dxe_A 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYE--EHREKPFFKALIDYITKTPVVVMVLEGR 84 (160)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred CCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecc
Confidence 599999999999987 899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCcccccccCCCcc---ceEEcCCCHHHHHHHHHhccCCCccccc
Q psy4316 240 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM---NAIYGSRNEEEAARDIRFFFKDIIIEPS 303 (377)
Q Consensus 240 NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~r---NaVHgSDs~esA~rEi~fFFp~~~~epi 303 (377)
|||+.||+++|||||..| +|+|||++||.+..+ |+||||||+++|.+||.+||++..+...
T Consensus 85 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 148 (160)
T 2dxe_A 85 YAVEVVRKMAGATDPKDA---APGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEY 148 (160)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCC
T ss_pred CHHHHHHHHhCCCCCCcC---CCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhhccc
Confidence 999999999999999998 899999999999999 9999999999999999999997655433
No 25
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=4.3e-43 Score=316.73 Aligned_cols=138 Identities=31% Similarity=0.420 Sum_probs=132.5
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
..+|+||+|||||++++ +|+||++|+++||.|+++||++|++++|++||. +|++++||++||+||+||||+||+|+
T Consensus 19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle 96 (169)
T 1zs6_A 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYA--ELRERPFYGRLVKYMASGPVVAMVWQ 96 (169)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEe
Confidence 44799999999999987 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP 302 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep 302 (377)
|+|||+.||+++|||||..| .|+|||++||.+..+|+||||||+++|.+||.+||++..+..
T Consensus 97 g~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~ 158 (169)
T 1zs6_A 97 GLDVVRTSRALIGATNPADA---PPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLC 158 (169)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCC
T ss_pred cCCchHHHHHHhCCCCcccC---CCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhhhc
Confidence 99999999999999999998 899999999999999999999999999999999999765543
No 26
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=5e-43 Score=319.59 Aligned_cols=138 Identities=27% Similarity=0.373 Sum_probs=132.5
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
..+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.||+||+||||+||+|+
T Consensus 30 ~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle 107 (182)
T 1w7w_A 30 AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYH--DLKERPFFNGLCDFLSSGPVIAMVWE 107 (182)
T ss_dssp CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred chhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEe
Confidence 45799999999999987 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCCcccc
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEP 302 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~~~ep 302 (377)
|+|||+.||++||||||..| .|+|||++||.+..+|+||||||+++|.+||.+||++..+..
T Consensus 108 G~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~ 169 (182)
T 1w7w_A 108 GEGVITYGRKLIGATDPQKS---APGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVS 169 (182)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCC
T ss_pred cccHHHHHHHHhCCCCCCCC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhccc
Confidence 99999999999999999999 899999999999999999999999999999999998765543
No 27
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=7.6e-43 Score=313.76 Aligned_cols=139 Identities=32% Similarity=0.473 Sum_probs=132.9
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEee
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 238 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~G 238 (377)
.+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||. +|++++||++||+||+||||+||+|+|
T Consensus 7 ~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 84 (164)
T 2az3_A 7 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYA--EHEDKPFFDGLVSFITSGPVFAMVWEG 84 (164)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEcc
Confidence 4699999999999998 899999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHH--HHHHHHHhccCCCcccccC
Q psy4316 239 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEE--EAARDIRFFFKDIIIEPSN 304 (377)
Q Consensus 239 ~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~e--sA~rEi~fFFp~~~~epi~ 304 (377)
+|||+.||+++|||||..| +|+|||++||.+..+|+||||||++ +|.+||.+||++..+....
T Consensus 85 ~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~~~~~ 149 (164)
T 2az3_A 85 ADATRQVRQLMGATDAQDA---APGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWD 149 (164)
T ss_dssp TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCC
T ss_pred ccHHHHHHHHhCCCCcccc---CCCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhhcccc
Confidence 9999999999999999998 8999999999999999999999999 9999999999986664443
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=9.2e-43 Score=319.65 Aligned_cols=143 Identities=24% Similarity=0.380 Sum_probs=134.7
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccc---cccCCCCcccccceeecCcEEEE
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITR---EERDPVKVPRLVCYMVSGPVRVM 234 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~---e~~gk~ff~~LV~~MtSGPvVaL 234 (377)
..+|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||.++ +|++++||+.||+||+||||+||
T Consensus 24 ~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvam 103 (190)
T 4dz6_A 24 MLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTF 103 (190)
T ss_dssp TTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEE
T ss_pred chhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEE
Confidence 34799999999999986 89999999999999999999999999999999754 78899999999999999999999
Q ss_pred EEeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCCC----------ccceEEcCCCHHHHHHHHHhccCCCcccccC
Q psy4316 235 VLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND----------IMNAIYGSRNEEEAARDIRFFFKDIIIEPSN 304 (377)
Q Consensus 235 ~L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~----------~rNaVHgSDs~esA~rEi~fFFp~~~~epi~ 304 (377)
+|+|+|||+.||+|||||||..| .|+|||++||.+. .+|+||||||+++|.|||.|||++..+....
T Consensus 104 vleG~naV~~~R~l~GpTdP~~A---~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~~~ 180 (190)
T 4dz6_A 104 VVEGVESIEVVRKLCGATEPKLA---IPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEILNYK 180 (190)
T ss_dssp EEEEETHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCCCC
T ss_pred EEecCCHHHHHHHHcCCCChhhc---CCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHhcccc
Confidence 99999999999999999999999 8999999999999 9999999999999999999999987766554
Q ss_pred C
Q psy4316 305 A 305 (377)
Q Consensus 305 ~ 305 (377)
.
T Consensus 181 ~ 181 (190)
T 4dz6_A 181 R 181 (190)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=4.8e-40 Score=302.74 Aligned_cols=137 Identities=34% Similarity=0.526 Sum_probs=129.0
Q ss_pred ccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhccc-----------c----------------
Q psy4316 161 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFIT-----------R---------------- 211 (377)
Q Consensus 161 ~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~-----------~---------------- 211 (377)
.+|+||+|||||++++ +|+||++|+++||.|+++||+++|+++|++||.+ .
T Consensus 14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 93 (195)
T 1xqi_A 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG 93 (195)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence 3699999999999987 8999999999999999999999999999999932 1
Q ss_pred ----cccCCCCcccccceeecCcEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCcc----------ce
Q psy4316 212 ----EERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM----------NA 277 (377)
Q Consensus 212 ----e~~gk~ff~~LV~~MtSGPvVaL~L~G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~r----------Na 277 (377)
+|++++||+.|++||+||||+||+|+|+|||+.||+++|||||..| .|+|||++||.+..+ |+
T Consensus 94 ~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A---~pgTIRg~fg~~~~~~~~~~~~~~~N~ 170 (195)
T 1xqi_A 94 TDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSA---PPGTIRGDYSIDSPDLAAEEGRVVFNL 170 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGS---CTTSHHHHHCCCCHHHHHHTTSCCCCS
T ss_pred cccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcC---CCCchhHhhcCchhhhccccccccceE
Confidence 5788999999999999999999999999999999999999999999 799999999999988 99
Q ss_pred EEcCCCHHHHHHHHHhccCCCcc
Q psy4316 278 IYGSRNEEEAARDIRFFFKDIII 300 (377)
Q Consensus 278 VHgSDs~esA~rEi~fFFp~~~~ 300 (377)
||||||+++|.|||.+||+...+
T Consensus 171 vHgSDS~esA~rEi~~~F~~~e~ 193 (195)
T 1xqi_A 171 VHASDSPSEAEREIRFWFREEEV 193 (195)
T ss_dssp EEECSSHHHHHHHHHHHCCGGGS
T ss_pred EEcCCCHHHHHHHHHHhCChhhc
Confidence 99999999999999999987543
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.96 E-value=8.9e-30 Score=252.40 Aligned_cols=112 Identities=19% Similarity=0.300 Sum_probs=106.4
Q ss_pred cccceEEEEEcCccccc--hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcccccccCCCCcccccceeecCcEEEEEEe
Q psy4316 160 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 237 (377)
Q Consensus 160 ~~~ErTLaLIKPDAv~~--~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~~~e~~gk~ff~~LV~~MtSGPvVaL~L~ 237 (377)
...|+||+|||||++++ +|+||++|+++||.|+++||++|++++|++||. +|+ .+|++||+|||++||+|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~--~h~-----~~Lv~~mtsGPvva~vle 305 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFR--EKA-----PDFLPLLNKGPVIALEFN 305 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHG--GGG-----GGTGGGGGGSCEEEEEEE
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHH--HHH-----HHHHHHhccCCEEEEEEE
Confidence 45799999999999998 899999999999999999999999999999999 887 779999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCcccccccCCCccceEEcCCCHHHHHHHHHhccCCC
Q psy4316 238 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDI 298 (377)
Q Consensus 238 G~NAV~~wReLiGPtdP~~Ar~~~P~SLRA~fG~d~~rNaVHgSDs~esA~rEi~fFFp~~ 298 (377)
|+|||+.||+++|+|+| .|+||||||+++|++||.+||+..
T Consensus 306 G~~av~~~R~l~g~t~p--------------------gN~vHgSds~esA~~Ei~~fF~~~ 346 (352)
T 3bh7_B 306 GDGAVEVCQLIVNEIFN--------------------GTKMFVSESKETASGDVDSFYNFA 346 (352)
T ss_dssp STTHHHHHHHHHHHHCT--------------------TSCEEECSCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHhcCCCC--------------------CceEEecCCHHHHHHHHHHhcCcc
Confidence 99999999999999986 299999999999999999999753
No 31
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=127.71 Aligned_cols=48 Identities=29% Similarity=0.528 Sum_probs=45.4
Q ss_pred chhhHhhhhhhcchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCC
Q psy4316 318 SFLAHKIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFSP 365 (377)
Q Consensus 318 s~~~~r~YL~~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP~~p 365 (377)
.+.|+|+||+++|+|+|++||++|||+||.|||+|||+||++|||+-.
T Consensus 5 ~slp~R~YL~~~V~p~L~~GL~~lak~rP~DPi~~LA~~Ll~~~~~~~ 52 (55)
T 3g36_A 5 QSLPTRAYLDQTVVPILLQGMAVLAKERPPNPIEFLASYLLKNKAQFE 52 (55)
T ss_dssp GGSCHHHHHHTTTHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHGGGGT
T ss_pred ccCcHHHHHHHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCcccc
Confidence 378999999999999999999999999999999999999999999753
No 32
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=98.41 E-value=1.5e-08 Score=89.33 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=51.3
Q ss_pred CCCC-ccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 56 TGAW-SADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 56 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.-.+ |.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 42 ~~~l~s~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vleg~naV~~~R~l~G~t~p 99 (146)
T 3evo_A 42 FWSKAPRNLIEQHYKEHSEQSY---FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNP 99 (146)
T ss_dssp EESSCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSST
T ss_pred EeccCCHHHHHHHHHHHcCCcc---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCc
Confidence 3345 99999999999999999 99999999999 99999999999999999999984
No 33
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=98.36 E-value=2.2e-08 Score=89.69 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=52.7
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...++|.+++++|| |.++|.||.+| |+|||+|.|.|++.|-|+|+++|
T Consensus 46 K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp 103 (161)
T 4fkx_A 46 KLLQPTEEQAKQHYIDLASKPF---YSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNP 103 (161)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred EEecCCHHHHHHHHHHHcCCcc---HHHHHHHHhCCCcEEEEEeccChHHHHHHHhcCCCh
Confidence 5556889999999999999999 99999999999 99999999999999999999984
No 34
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=98.34 E-value=4.6e-08 Score=87.06 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=27.4
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-..|.+...+||.+++++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 41 ~k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p 99 (155)
T 3r9l_A 41 MKFFVPSKNLVEEHYKEHAARPF---FAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKP 99 (155)
T ss_dssp EECC------------------------------CCSCCEEEEEESTTHHHHHHHHHCCSCT
T ss_pred EEEecCCHHHHHHHHHHhcCCcc---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCh
Confidence 46667899999999999999999 99999999999 99999999999999999999984
No 35
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=98.32 E-value=2.9e-08 Score=87.97 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=52.7
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||.+++++|| |.++|.||.+| |+|||+|.|.|++.|-|+|+++|
T Consensus 40 k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p 97 (151)
T 3mpd_A 40 KCVIPKREVLETHYSHLSSMPF---FSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNP 97 (151)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred EEEcCCHHHHHHHHHHHcCCcc---HHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCh
Confidence 5557889999999999999999 99999999999 99999999999999999999985
No 36
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=98.30 E-value=3.6e-08 Score=87.77 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=53.5
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI 114 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
.|.-..|.+...+||.+++++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|.
T Consensus 42 ~k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~ 101 (155)
T 3fkb_A 42 LKQLVPTKDLAESHYAEHKERPF---FGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPL 101 (155)
T ss_dssp EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred EEEecCCHHHHHHHHHHhcCCch---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChh
Confidence 35557899999999999999999 99999999999 999999999999999999999843
No 37
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=98.30 E-value=3e-08 Score=87.39 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=59.8
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCcccccCCCCCceEecCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDST 131 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sve~~d~~ 131 (377)
.|.-.+|.+...+||.++++.|| |.++|.||.+| |+|||+|.|.|++.|-|+|+|+ ..+.+
T Consensus 41 ~k~~~lt~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~td--------------p~~A~ 103 (145)
T 4hr2_A 41 ARMAHLSRADAEKFYAVHAERPF---FKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATD--------------PKKAE 103 (145)
T ss_dssp EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSS--------------TTTSC
T ss_pred EeeecCCHHHHHHHHHHHhcCch---HHHHHHHhcCCCEEEEEEEcCCcHhHHhhccCCCC--------------cccCC
Confidence 35556889999999999999999 99999999999 9999999999999999999998 44445
Q ss_pred Cccccccc
Q psy4316 132 PNIVQERS 139 (377)
Q Consensus 132 ~~~~~~r~ 139 (377)
|.+++++.
T Consensus 104 pgtIR~~f 111 (145)
T 4hr2_A 104 KGTIRADF 111 (145)
T ss_dssp TTSHHHHH
T ss_pred CCCcHHHh
Confidence 66666553
No 38
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=98.28 E-value=6.4e-08 Score=85.58 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=53.0
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-..|.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 36 ~k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p 94 (150)
T 1nb2_A 36 AKLMVISKDGAAAHYAELGGGPF---FGGLVGGATSGPVFAMVWEGLNAAATARQILGATNP 94 (150)
T ss_dssp EECCCCTTHHHHHHTCTTSSSTT---HHHHHHHHTSSCCBEEEEESTTHHHHHHHHHCCSST
T ss_pred EEEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEecCCHHHHHHHHhCCCCc
Confidence 35567888999999999999999 99999999999 99999999999999999999984
No 39
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=98.27 E-value=4.8e-08 Score=88.38 Aligned_cols=56 Identities=29% Similarity=0.357 Sum_probs=52.6
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|++...++|.+++++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 59 K~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp 116 (172)
T 3l7u_A 59 KFMQASEDLLKEHYVDLKDRPF---FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNP 116 (172)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred EEEeCCHHHHHHHHHHhcCCch---HHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCh
Confidence 4556889999999999999999 99999999999 99999999999999999999984
No 40
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=98.27 E-value=4e-08 Score=87.54 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=53.0
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI 114 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
|.-..|++..+++|++++++|| |.++|.||.+| |+|||+|.|+|++.|-++|+|+|.
T Consensus 44 K~~~lt~e~a~~fY~~h~~kpf---f~~Lv~fmtSGPvvamvleg~naV~~~R~l~G~T~p~ 102 (156)
T 3js9_A 44 KFEHPTMDVVAQHYCEHKDKPF---FKDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPV 102 (156)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHHHCCEEEEEEEETTHHHHHHHHHCCSSGG
T ss_pred EEecCCHHHHHHHHHHhcCCcc---HHHHHHHHhcCCCEEEEEeccchHHHHHHhcCCCCcc
Confidence 4556889999999999999999 99999999999 999999999999999999999943
No 41
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=98.25 E-value=5.5e-08 Score=86.76 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=52.5
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...++|.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 36 K~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp 93 (157)
T 3q8u_A 36 KLMQVPMELAETHYGEHQGKPF---YNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNP 93 (157)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred EEecCCHHHHHHHHHHHCCCcc---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHcCCCCh
Confidence 4556889999999999999999 99999999999 99999999999999999999984
No 42
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=98.25 E-value=6e-08 Score=85.57 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=52.1
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-|+|+|+|
T Consensus 36 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p 93 (148)
T 2vu5_A 36 KLMQVTPEIAGQHYAEHEEKPF---FGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRP 93 (148)
T ss_dssp EEECCCHHHHHHTGGGTTTCTH---HHHHHHHHTTCCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCc
Confidence 4456788899999999999999 99999999999 99999999999999999999984
No 43
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=98.23 E-value=6.4e-08 Score=85.69 Aligned_cols=56 Identities=27% Similarity=0.355 Sum_probs=51.5
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|++...+||.+.+++|| |.+++.||.+| |+|||+|.|.|++.|-|+|+|+|
T Consensus 38 k~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p 95 (151)
T 3bbb_A 38 KFLRASEEHLKQHYIDLKDRPF---FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNP 95 (151)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred EEecCCHHHHHHHHHHhcCCCc---hHHHHHHHccCCEEEEEEecCCHHHHHHHHhCCCCc
Confidence 4445778888999999999999 99999999999 99999999999999999999983
No 44
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=98.22 E-value=6.6e-08 Score=84.25 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=52.2
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-.+|.+...+||.+.+++|| |.+++.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 36 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtsGPvva~vl~g~~aV~~~R~l~G~t~p 93 (137)
T 1wkj_A 36 KLMQISQELAERHYAEHREKPF---FPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHP 93 (137)
T ss_dssp EEECCCHHHHHHHTGGGSSSSS---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCC
Confidence 5556788899999999999999 99999999999 99999999999999999999983
No 45
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=98.21 E-value=6.5e-08 Score=84.17 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI 114 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
|.-.+|.+...+||.+.+++|| |.+++.||.+| |+|||+|.|.|++.|-++|+++|.
T Consensus 37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~ 95 (136)
T 1k44_A 37 QLRTVSAELASQHYAEHEGKPF---FGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPV 95 (136)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHTTTSCEEEEEEEETTHHHHHHHHHCCSSTT
T ss_pred EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhccCCEEEEEEeCCCHHHHHHHHhCCCCcc
Confidence 4456788899999999999999 99999999999 999999999999999999999943
No 46
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=98.20 E-value=6.5e-08 Score=85.01 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=52.1
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||.+.+++|| |.+++.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p 94 (144)
T 1nhk_R 37 RLQHLSQAQAEGFYAVHKARPF---FKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNP 94 (144)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhccCCEEEEEEeccCHHHHHHHHhCCCCC
Confidence 4456788899999999999999 99999999999 99999999999999999999994
No 47
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=98.20 E-value=6.6e-08 Score=84.75 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=52.2
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-.+|.+...+||.+.+++|| |.+++.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p 94 (142)
T 2hur_A 37 KMLHLTVEQARGFYAEHDGKPF---FDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNP 94 (142)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSST
T ss_pred EEecCCHHHHHHHHHHhcCCCc---hHHHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCc
Confidence 4556888899999999999999 99999999999 99999999999999999999984
No 48
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=98.20 E-value=8e-08 Score=84.96 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=52.2
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 37 k~~~ls~~~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p 94 (150)
T 1pku_A 37 KFMNVERSFAQQHYADLSDKPF---FPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRP 94 (150)
T ss_dssp EEECCCHHHHHHHSGGGTTSTT---HHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred EEecCCHHHHHHHHHHhcCCCc---cHHHHHHhcCCCEEEEEEeccchHHHHHHHhCCCCc
Confidence 4556788899999999999999 99999999999 99999999999999999999994
No 49
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=98.19 E-value=7.3e-08 Score=85.49 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=52.1
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 40 k~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p 97 (153)
T 1s57_A 40 KMFQCPKELAEEHYKDLSAKSF---FPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDP 97 (153)
T ss_dssp EEECCCHHHHHHHTGGGTTSSS---HHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSST
T ss_pred hhCCCCHHHHHHHHHHhcCCCc---chhHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCc
Confidence 4556788899999999999999 99999999999 99999999999999999999983
No 50
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=98.19 E-value=9.1e-08 Score=84.52 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=52.2
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 36 k~~~ls~e~a~~fY~~~~~kpf---f~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p 93 (149)
T 1u8w_A 36 KLISVERSFAEKHYEDLSSKSF---FSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNP 93 (149)
T ss_dssp EEECCCHHHHHHHTCTTSSSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred EEecCCHHHHHHHHHHHcCCCc---chhHHhHhcCCCEEEEEEecCCchHHHHHHhCCCCc
Confidence 4556788899999999999999 99999999999 99999999999999999999994
No 51
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=98.18 E-value=8.5e-08 Score=85.52 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=52.3
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...++|.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 44 K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p 101 (157)
T 1xiq_A 44 KMLNPTEEILKEHYKELSDQPF---FKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNP 101 (157)
T ss_dssp EEECCCHHHHHHHTGGGSSSSS---CTTHHHHHTTSCEEEEEEESTTHHHHHHHHHCCSST
T ss_pred EEecCCHHHHHHHHHHHcCCCc---hHHHHHHHcCCCEEEEEEecccchHHHHHHcCCCCC
Confidence 4556788899999999999999 99999999999 99999999999999999999994
No 52
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=98.17 E-value=1.1e-07 Score=85.28 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=52.8
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI 114 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
|.-..|.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|.
T Consensus 43 k~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~ 101 (164)
T 2az3_A 43 KFMRIDEELAHEHYAEHEDKPF---FDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQ 101 (164)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred EEecCCHHHHHHHHHHHcCCcc---hHHHHHHHcCCCEEEEEEccccHHHHHHHHhCCCCcc
Confidence 4556888999999999999999 99999999999 999999999999999999999943
No 53
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=98.16 E-value=1.1e-07 Score=85.31 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=52.5
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...++|.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 59 K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p 116 (162)
T 1ehw_A 59 KMLQAPESVLAEHYQDLRRKPF---YPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDS 116 (162)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred EEecCCHHHHHHHHHHHcCCcc---hHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCC
Confidence 5556888999999999999999 99999999999 99999999999999999999994
No 54
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=98.16 E-value=1.2e-07 Score=85.45 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=53.0
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.|.-..+.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 55 ~k~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p 113 (169)
T 1zs6_A 55 LKLVQASEELLREHYAELRERPF---YGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNP 113 (169)
T ss_dssp EEEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred EEEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEecCCchHHHHHHhCCCCc
Confidence 35557888999999999999999 99999999999 99999999999999999999994
No 55
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1e-07 Score=85.33 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=46.3
Q ss_pred ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCCc
Q psy4316 54 SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLPI 114 (377)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
.|.-..|.+...++|.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|.
T Consensus 47 ~K~~~ls~e~a~~fY~~h~~kpf---f~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~ 106 (161)
T 3b54_A 47 IKLVKADDKLLEQHYAEHVGKPF---FPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPL 106 (161)
T ss_dssp EEEECCCHHHHHHHCC----------CHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred EEEecCCHHHHHHHHHHHcCCcc---hHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcc
Confidence 35556888999999999999999 99999999999 999999999999999999999943
No 56
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=98.12 E-value=6.5e-08 Score=84.81 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=52.5
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-.+|.+...+||.+.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+++|
T Consensus 38 k~~~ls~e~a~~~Y~~~~~kpf---f~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p 95 (142)
T 3ztp_A 38 KMFRFTPEKAGEFYYVHRERPF---FQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDS 95 (142)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSH
T ss_pred eeccCCHHHHHHHHHHhcCCch---HHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCH
Confidence 5557889999999999999999 99999999999 99999999999999999999983
No 57
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=98.12 E-value=1.2e-07 Score=84.77 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=52.2
Q ss_pred cCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||.+.+++|| |.+++.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 42 K~~~ls~e~a~~~Y~~h~~kpf---f~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p 99 (160)
T 2dxe_A 42 KMIWIDRELAEKHYEEHREKPF---FKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDP 99 (160)
T ss_dssp EEECCCHHHHHHHTGGGTTSTT---HHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred EEecCCHHHHHHHHHHHcCCCc---hHHHHHHhcCCCEEEEEEeccCHHHHHHHHhCCCCC
Confidence 4556788899999999999999 99999999999 99999999999999999999984
No 58
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=98.12 E-value=1.6e-07 Score=85.53 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=65.2
Q ss_pred eecCcccccccCC-ccccccCccccccCCCCChh---HHHHhhhhhhCCC-ccccCCCCccccCCccccccCCchhhhhh
Q psy4316 6 RFDNELDYFSSGV-GTESVNGKTENRIKDDDNED---EEEKQNYMERGPH-SFSKTGAWSADNFDGDVADLRHSEFRSWF 80 (377)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
.+.+++++|-.+. .+.+...+|---||-|--.. .+--+...+.|-. .-.|.-.+|.+...+||++.+++|| |
T Consensus 13 ~~~~~~~~~f~~~~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpf---f 89 (182)
T 1w7w_A 13 DYPTTENLYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPF---F 89 (182)
T ss_dssp -----------------CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTT---H
T ss_pred ccchhhhhhcCCCccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcc---h
Confidence 3557888875443 23333455666677654322 1222222222221 1235557899999999999999999 9
Q ss_pred hhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 81 YRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
.++|.+|.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 90 ~~Lv~~mtSGPvvamvleG~naV~~~R~l~G~T~p 124 (182)
T 1w7w_A 90 NGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDP 124 (182)
T ss_dssp HHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSG
T ss_pred HHHHHHHcCCCEEEEEEecccHHHHHHHHhCCCCC
Confidence 9999999999 99999999999999999999994
No 59
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=98.01 E-value=2.2e-07 Score=85.21 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=52.3
Q ss_pred cCCCCccccCCcccc-----ccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 55 KTGAWSADNFDGDVA-----DLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 55 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
|.-..|.+...+||. +.+++|| |.++|.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 61 K~~~ls~e~a~~fY~~~~~~~h~~kpf---f~~Lv~~mtSGPvvamvleG~naV~~~R~l~GpTdP 123 (190)
T 4dz6_A 61 KMLIVDESLAKKHYLYDDIVFRHSEAV---WNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEP 123 (190)
T ss_dssp EEEECCHHHHHHHSCHHHHHHHTCHHH---HHHHHHHHTTSEEEEEEEEEETHHHHHHHHHCCSSG
T ss_pred EEecCCHHHHHHHhcccccHHhcCccH---HHHHHHHhcCCCEEEEEEecCCHHHHHHHHcCCCCh
Confidence 445688999999999 9999999 99999999999 99999999999999999999984
No 60
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=97.48 E-value=3.9e-06 Score=77.19 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=38.8
Q ss_pred ccCCchhhhhhhhhhhheeec--hheeecCCCceeeecccCCCCCC
Q psy4316 70 DLRHSEFRSWFYRQCLCMYHG--IEYVYNGLNPIKVSKWPLPPPLP 113 (377)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
+.+.+|| |..+|.||.+| |+|||+|.|.|++.|-++|+|+|
T Consensus 98 ~~~gk~f---f~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP 140 (195)
T 1xqi_A 98 VEVGRII---KRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSP 140 (195)
T ss_dssp HHHHHHH---HHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCG
T ss_pred hhcCCcc---hHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCC
Confidence 7888999 99999999999 99999999999999999999993
No 61
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=96.77 E-value=0.001 Score=54.74 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=32.4
Q ss_pred hHhhhhhhcchhHHHHH-HHHHHHhCCCChHHHHHHHHHH
Q psy4316 321 AHKIYLREFVYPTLQKG-LAELVRMKPAHSYEWFVNWLLE 359 (377)
Q Consensus 321 ~~r~YL~~~v~P~L~~g-L~el~k~rP~dPv~~La~~Ll~ 359 (377)
..+.||.+.=++.|+++ +.+||..||+||+.||++|+-+
T Consensus 39 ~ce~YlqkhgI~eLLqe~tv~Ll~~RPeDPv~FLaeYF~k 78 (95)
T 4f9k_A 39 GCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEK 78 (95)
T ss_dssp TTHHHHHHTCTTTTTHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 48899999666666665 4678999999999999999864
No 62
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=96.34 E-value=0.00019 Score=71.34 Aligned_cols=93 Identities=11% Similarity=0.024 Sum_probs=66.9
Q ss_pred ccccccCCCCChh--HHHHhhhhhhCCCcc--ccCCCCccccCCccccccCCchhhhhhhhhhhheeec--hheeecCCC
Q psy4316 26 KTENRIKDDDNED--EEEKQNYMERGPHSF--SKTGAWSADNFDGDVADLRHSEFRSWFYRQCLCMYHG--IEYVYNGLN 99 (377)
Q Consensus 26 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 99 (377)
+|---||-|.-.. -.+--.-+|+.-... .|.-..+.+...+||++.+ ..++.||.+| |+|||+|.|
T Consensus 237 rTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~--------~~Lv~~mtsGPvva~vleG~~ 308 (352)
T 3bh7_B 237 SCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA--------PDFLPLLNKGPVIALEFNGDG 308 (352)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG--------GGTGGGGGGSCEEEEEEESTT
T ss_pred ceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH--------HHHHHHhccCCEEEEEEECcC
Confidence 3444567666443 222222333322221 3555678899999999987 6799999999 999999999
Q ss_pred ceeeecccCCCCCCcccccCCCCCceEecCCCCcc
Q psy4316 100 PIKVSKWPLPPPLPIWSLSGSSSGSVTLPDSTPNI 134 (377)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~sve~~d~~~~~ 134 (377)
.|+..|-|+|.++++ |.|+..|+...+
T Consensus 309 av~~~R~l~g~t~pg--------N~vHgSds~esA 335 (352)
T 3bh7_B 309 AVEVCQLIVNEIFNG--------TKMFVSESKETA 335 (352)
T ss_dssp HHHHHHHHHHHHCTT--------SCEEECSCHHHH
T ss_pred HHHHHHHHhcCCCCC--------ceEEecCCHHHH
Confidence 999999999988862 999999986443
No 63
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=94.15 E-value=0.058 Score=37.17 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy4316 332 PTLQKGLAELVRMKPAHSYEWFVNWLLE 359 (377)
Q Consensus 332 P~L~~gL~el~k~rP~dPv~~La~~Ll~ 359 (377)
..|-.=..++++++|.|++.|.|+|+-+
T Consensus 9 ~lL~~~~~~vl~~qP~di~~f~a~yF~~ 36 (41)
T 2izx_A 9 ELLQGYTVEVLRQQPPDLVEFAVEYFTR 36 (41)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444445688999999999999999864
No 64
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=93.79 E-value=0.069 Score=38.62 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=25.0
Q ss_pred hcchhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy4316 328 EFVYPTLQKGLAELVRMKPAHSYEWFVNWLLE 359 (377)
Q Consensus 328 ~~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~ 359 (377)
..+...|-.=..++++++|.|++.|.++|+-+
T Consensus 13 ~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~~ 44 (50)
T 2kyg_A 13 PGLTELLQGYTVEVLRQQPPDLVEFAVEYFTR 44 (50)
T ss_dssp TTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34445555556789999999999999999864
No 65
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=93.61 E-value=0.061 Score=39.70 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy4316 329 FVYPTLQKGLAELVRMKPAHSYEWFVNWLLE 359 (377)
Q Consensus 329 ~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~ 359 (377)
.+...|-.=..++++.+|.|++.|.|+|+-+
T Consensus 9 ~l~~lL~~f~~evlr~qP~Di~~Faa~YF~~ 39 (54)
T 2izy_A 9 GLTELLQGYTVEVLRQQPPDLVDFAVEYFTR 39 (54)
T ss_dssp THHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4444555556789999999999999999864
No 66
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=85.23 E-value=0.0046 Score=60.16 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=36.6
Q ss_pred hhhHhhhhhh-cchhHHHHHHHHHHHhCCCChHHHHHHHHHHcCCCC
Q psy4316 319 FLAHKIYLRE-FVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDPFS 364 (377)
Q Consensus 319 ~~~~r~YL~~-~v~P~L~~gL~el~k~rP~dPv~~La~~Ll~nNP~~ 364 (377)
-...+.||.+ .|.+.|-.-..+||++||+||++|+++||-+....+
T Consensus 15 ~~~~~~y~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 61 (381)
T 4din_B 15 LKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEE 61 (381)
T ss_dssp CCCSCCCSSSSCCSCCCCCCCSCSSCSSSSCSSTTSSSCSCSSCCC-
T ss_pred HHHHHHHhhhhChHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhhc
Confidence 4568899999 555555555678999999999999999999877654
No 67
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=45.57 E-value=15 Score=29.34 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=38.7
Q ss_pred ceEEEEEcCccccchHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcc
Q psy4316 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFI 209 (377)
Q Consensus 163 ErTLaLIKPDAv~~~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~ 209 (377)
...+++++|..+..+.+|.+.|++..-.|+++. .++.++|+++..
T Consensus 4 ~~~Ivv~~P~sy~Da~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivD 48 (87)
T 3p04_A 4 QSTIVPVELHSFEDAQVIGGAFRDGDAVVFDMS--LLSREEARRIVD 48 (87)
T ss_dssp CCSCEEEECSSGGGHHHHHHHHHTTCCEEEECT--TSCHHHHHHHHH
T ss_pred CcEEEEEecCcHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHH
Confidence 345799999999999999999998888888876 679999998864
No 68
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=35.00 E-value=25 Score=24.74 Aligned_cols=35 Identities=29% Similarity=0.619 Sum_probs=25.6
Q ss_pred CCCccccCCCCcccc--CCccccccCCc---hhhhhhhhh
Q psy4316 49 GPHSFSKTGAWSADN--FDGDVADLRHS---EFRSWFYRQ 83 (377)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~ 83 (377)
|+-|...+-.|++-| |+++.-|++-| ||+++|..+
T Consensus 4 ~~p~~~e~~Pw~atNPFLde~l~dvqPSPINPFsafFeE~ 43 (45)
T 2jxc_B 4 GSPSVTEASPWRATNPFLNETLQDVQPSPINPFSAFFEEQ 43 (45)
T ss_dssp --CCCSCCCCSCSSCSSSSTTTSCCCCCTTCSCTTHHHHC
T ss_pred CCCccccCCCcccCCcchhhhHHhCCCCCCChHHHhhhhh
Confidence 344555667788876 89999999987 588888754
No 69
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=25.67 E-value=36 Score=28.99 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=36.4
Q ss_pred CCCCceEecCCCC-------ccccccccccc--------cccCCCCCchhhhccccccceEEEEEcCcccc
Q psy4316 120 SSSGSVTLPDSTP-------NIVQERSEAES--------VKLDGDEVPAPIVQNLHCYEYTLALVKPHAFR 175 (377)
Q Consensus 120 ~~d~sve~~d~~~-------~~~~~r~~~e~--------~~~~~d~vt~~~~~~~~~~ErTLaLIKPDAv~ 175 (377)
-.|+||++.+.+. +.|++|..... +...+..+++.+ ....+++-|+--|...
T Consensus 45 L~DdTieI~E~~~~NSG~~~g~fLkR~rvpk~~~~~~~~~~~~Dl~VG~~v----~i~gR~f~I~dcD~fT 111 (133)
T 2z14_A 45 PEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPPPDEDQFYTVYHFNVGTEV----VFYGRTFKIYDCDAFT 111 (133)
T ss_dssp TTTTEEEEECCC-----CCCSSEEEEECCBCSTTCTTSBCCGGGCCTTCEE----EETTEEEEEEEECHHH
T ss_pred cCCCcEEEEecCccCCCCcCceEEeeeeCCCCCcccCcccCHHHcccCCEE----EEecEEEEEEeCCHHH
Confidence 3588999988873 68888887654 455666777666 3456888888766654
No 70
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=22.25 E-value=38 Score=24.13 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=18.0
Q ss_pred hhCCCccccCCCCccccCCccccc
Q psy4316 47 ERGPHSFSKTGAWSADNFDGDVAD 70 (377)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~ 70 (377)
|.-||.||-....|+=-++||||-
T Consensus 13 E~~~~~FScaSSLSAL~l~E~yiq 36 (47)
T 1v18_B 13 ESTPDGFSCSSSLSALSLDEPFIQ 36 (47)
T ss_dssp CSCCCCCC----CCCCCCSSCCCC
T ss_pred ecCCCCccchhccccccccchhhh
Confidence 667999999999999999999984
No 71
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=21.48 E-value=5 Score=33.91 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=49.0
Q ss_pred CcccccccCCCccceEE-cCCCHHHHHHHHHhccCCCcccccCCcccccccCCCCCchhhHhhhhhhcchhHHHHHHHHH
Q psy4316 263 LSLRAKYGVNDIMNAIY-GSRNEEEAARDIRFFFKDIIIEPSNAMESDISCEPSSNSFLAHKIYLREFVYPTLQKGLAEL 341 (377)
Q Consensus 263 ~SLRA~fG~d~~rNaVH-gSDs~esA~rEi~fFFp~~~~epi~~~~~~~s~e~~~~s~~~~r~YL~~~v~P~L~~gL~el 341 (377)
.+||++|| .+.-..- +=.-.++-+.|..|+|.+.....+.+ =|..-.. +...++++|+.+.|.|-==++|.++
T Consensus 11 ~~lk~kyg--k~y~v~~~t~~~dd~~e~~~~y~Fk~Pt~~~YnR---yi~t~a~-~~~aAakNflmd~V~~E~KeaL~el 84 (114)
T 3fgx_A 11 DELKQKYG--RVYEIRIEGLEYENGEEAEFVFYFTRPKVSDISR---FTKELNS-KPDMAMKNLTFSCIVPEQEEELRQA 84 (114)
T ss_dssp HHHHHHHS--SEEEEEECC--------CCEEEEEECCCHHHHHH---HHHHHHH-CHHHHHHHHHHTTBCGGGHHHHHHH
T ss_pred HHHHHHhC--ceEEEEeeeecCCCCceeeEEEEecCCCHHHHHH---HHHHHhc-chhHHHHHHHHHhcCcccHHHHHHH
Confidence 46899997 3322222 22222334566778887643322221 0011111 3478999999999999999999999
Q ss_pred HHhCCCChHH
Q psy4316 342 VRMKPAHSYE 351 (377)
Q Consensus 342 ~k~rP~dPv~ 351 (377)
..++|.=.+.
T Consensus 85 lEE~PGaalq 94 (114)
T 3fgx_A 85 AEEFPGLTFN 94 (114)
T ss_dssp HHHSTTHHHH
T ss_pred HHHCccHHHH
Confidence 9999875554
No 72
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=21.12 E-value=7.6e+02 Score=26.18 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=32.5
Q ss_pred eEEEEEcCccccc----hHHHHHHHHHcCCeEEEEEEeecCHHHHHHhcc
Q psy4316 164 YTLALVKPHAFRH----VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFI 209 (377)
Q Consensus 164 rTLaLIKPDAv~~----~G~II~~I~e~GF~Iv~~Kmv~Ls~e~A~efY~ 209 (377)
++++|+.|..+.. +.++++.|++.||.|+.. -+-++|..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~i~~L~~~Le~~g~~V~~a----~s~~Da~~~i~ 47 (715)
T 3n75_A 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYP----NDRDDLLKLIE 47 (715)
T ss_dssp CEEEEECCCSCHHHHHHHHHHHHHHHHTTCEEECC----SSHHHHHHHHH
T ss_pred ceEEEccCCCcccchHHHHHHHHHHHHCCcEEEEe----CCHHHHHHHHH
Confidence 4678888888754 678899999999999544 47777777765
Done!