RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4316
(377 letters)
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 141 bits (358), Expect = 2e-41
Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
E TLA++KP A E+IE I E GFTIV+K+ + +PEQ ++F+ E + P L
Sbjct: 1 ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYA--EHYGKMFFPHL 58
Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
V YM SGP+ MVLA+ AI W L+GP + KAK +P SLRA YG +D+ NA++GS
Sbjct: 59 VAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSD 118
Query: 283 NEEEAARDIRFFFK 296
+ A R+IRF F
Sbjct: 119 SFSSAEREIRFMFP 132
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 141 bits (358), Expect = 2e-41
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TLA++KP A + + +I + KGF IV K + T EQA EF+ E +
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKP--FFN 58
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGPV MVL + A++ W LMGP DP +A P ++R +G++ NA++G
Sbjct: 59 DLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAA---PGTIRGDFGLDIGRNAVHG 115
Query: 281 SRNEEEAARDIRFFFKDIII 300
S + E A R+I FF + I
Sbjct: 116 SDSPESAEREIALFFPESEI 135
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 140 bits (356), Expect = 4e-41
Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TLAL+KP A + +I I++ GF IV K T EQA EF++ + R P
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRP--FFP 58
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGPV M+L K A+ W ++GP +P+ A+ + P SLRA +G + + NA++G
Sbjct: 59 DLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHG 118
Query: 281 SRNEEEAARDIRFFF 295
S + E AAR+I FFF
Sbjct: 119 SDSVESAAREIAFFF 133
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 135 bits (343), Expect = 4e-39
Identities = 60/134 (44%), Positives = 85/134 (63%), Gaps = 3/134 (2%)
Query: 163 EYTLALVKPHAFR-HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPR 221
EYTLAL+KP A ++I + I+E GF I+ +K T EQA EF+ EE D
Sbjct: 1 EYTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEED--YFED 58
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
LV +M SGP ++VL+K+ A+ W LMGP DP++AK P SLRA++ + + NA++GS
Sbjct: 59 LVEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGS 118
Query: 282 RNEEEAARDIRFFF 295
+ EEA ++I FFF
Sbjct: 119 SSAEEAEKEIDFFF 132
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 131 bits (333), Expect = 1e-37
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL ++KP A + +I ++KGF IV K + T EQA E + + + P P
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGK-PF-FP 58
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGPV MVL + A+ LMG +P +A P ++R + V+ NA++G
Sbjct: 59 GLVEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEAA---PGTIRGDFAVSIGRNAVHG 115
Query: 281 SRNEEEAARDIRFFFKD 297
S + E A R+I FF +
Sbjct: 116 SDSPESAEREIALFFPE 132
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 123 bits (310), Expect = 2e-34
Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 163 EYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 219
+ TLAL+KP A H +E + Q I GFTIV+KK ++T E A F+ E +
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFY--AEHKGKFFY 58
Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
RLV +M SGP ++LA + AI+ W LMGP +A+ P S+R YG+ D NA +
Sbjct: 59 DRLVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATH 118
Query: 280 GSRNEEEAARDIRFFF 295
GS + A R+I FF
Sbjct: 119 GSDSPASAQREIALFF 134
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 111 bits (279), Expect = 2e-29
Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 163 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TLA++KP + E I++ I E GF+IVK+ T + ++A+ F+ R P
Sbjct: 30 ERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRS--FFP 87
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV YM SGPV VMVL K+ A+ W L+GP D KAK +P S+RA G++ N ++G
Sbjct: 88 SLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHG 147
Query: 281 SRNEEEAARDIRFFFKDI 298
S + E A R+I FFF D+
Sbjct: 148 SDSPESAEREISFFFGDV 165
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 106 bits (267), Expect = 5e-28
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL ++KP + + +I + KG IV K + T E A E + + + P P
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGK-PFF-P 58
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGPV MVL + A++ LMG +P A P ++R + ++ N ++G
Sbjct: 59 ELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAA---PGTIRGDFALSIGRNIVHG 115
Query: 281 SRNEEEAARDIRFFF 295
S + E A R+I +F
Sbjct: 116 SDSVESAEREIALWF 130
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 105 bits (263), Expect = 2e-27
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 165 TLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV-PR 221
T+ ++KPHA H + +I Q I ++GF I + F T A EF + V P
Sbjct: 3 TVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVY--KGVVPELPA 60
Query: 222 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGS 281
+V + SGP + +A + A++ + GP DP+ AK++ P +LRA+YG + + NA++ +
Sbjct: 61 MVDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCT 120
Query: 282 RNEEEAARDIRFFF 295
E+ +++FFF
Sbjct: 121 DLPEDGPLELKFFF 134
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 98.7 bits (246), Expect = 4e-25
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 163 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
E TLAL+KP A+ + I Q I++ GFTI K K K + ++A +F+ E + L
Sbjct: 1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYA--EHQSKPFYNEL 58
Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
V +M SGP+ M L AI W L+GP + A+ P S+RA +G + NA +GS
Sbjct: 59 VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSD 118
Query: 283 NEEEAARDIRFFF 295
+ AAR++ FFF
Sbjct: 119 SVASAARELEFFF 131
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 97.5 bits (244), Expect = 1e-24
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +++KP A + + +I ++KG IV K + + E A + +E+ P
Sbjct: 2 ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEK-PF-FG 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGPV VMVL + AI + LMG +P +A P ++R + ++ N ++G
Sbjct: 60 ELVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAA---PGTIRGDFALSIGENVVHG 116
Query: 281 SRNEEEAARDIRFFFKD 297
S + E AAR+I FF +
Sbjct: 117 SDSPESAAREIALFFSE 133
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 94.9 bits (237), Expect = 9e-24
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL+++KP A + + +I ++KG IV K + + E A + + + P
Sbjct: 3 ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGK-PFF-G 60
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV ++ SGPV MVL + AI LMG +P A P ++R + ++ N ++G
Sbjct: 61 ELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANAA---PGTIRGDFALSVGENVVHG 117
Query: 281 SRNEEEAARDIRFFFKD 297
S + E A R+I FF
Sbjct: 118 SDSPESAEREIALFFSK 134
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 77.8 bits (191), Expect = 2e-17
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
T ++KP + HV +I Q I+++GF I+ K K + E A +F+ R P
Sbjct: 2 SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSAR-PF-YN 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L YM SGP+ L + A+ W ++G DP +A ++RA Y + NA++G
Sbjct: 60 DLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAA---AGTIRALYAESKEANAVHG 116
Query: 281 SRNEEEAARDIRFFFK 296
S ++ AA +I FFFK
Sbjct: 117 SDSDANAALEISFFFK 132
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 76.0 bits (187), Expect = 2e-16
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 46/178 (25%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREE------- 213
E TL ++KP A + V +I ++ G IV K K TPEQ F+ + EE
Sbjct: 4 ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGN 63
Query: 214 -------------------RDPVKVPR-----LVCYMVSGPVRVMVLAKQKAIRRWLHLM 249
DPV+V + LV YM SGP+ MVL +A+ L+
Sbjct: 64 KLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLV 123
Query: 250 GPVDPDKAKRIYPLSLRAKYGVND----------IMNAIYGSRNEEEAARDIRFFFKD 297
GP P KA P ++R Y ++ + N ++ S + EEA R+I+F+F++
Sbjct: 124 GPTSPHKAP---PGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFRE 178
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 72.2 bits (177), Expect = 2e-15
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +KP A + I Q + KGF IV+ K K T E A E++ E +
Sbjct: 3 ERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYY--EEHKGKEFYE 60
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
RL+ +M SG + MV+ + AI ++G +P +A+ P ++R +G+ N I+
Sbjct: 61 RLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAE---PGTIRGDFGLYTPANIIHA 117
Query: 281 SRNEEEAARDIRFFFKD 297
S ++E A R+I+ FF +
Sbjct: 118 SDSKESAEREIKLFFGE 134
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 66.1 bits (161), Expect = 3e-13
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL ++KP R + + I+ GF +V K + T E A EF+ ER P
Sbjct: 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRER-PF-YG 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M SGP M+L K+ A+ + L+G DP +A ++R Y + N ++G
Sbjct: 60 ELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAE---GTVRKLYADSKGENIVHG 116
Query: 281 SRNEEEAARDIRFFF 295
S + E AA + FFF
Sbjct: 117 SDSAENAAIEAGFFF 131
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 63.4 bits (154), Expect = 2e-12
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 165 TLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
T ++KP A H+ I I GF IV K + T A F+ ER P L
Sbjct: 6 TFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAER-PF-YGEL 63
Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
V +M GP+ +L K+ A+ + L+G +P A ++R KY + NA++GS
Sbjct: 64 VEFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAE---GTIRKKYAKSIGENAVHGSD 120
Query: 283 NEEEAARDIRFFF 295
++E A + F F
Sbjct: 121 SDENAQIEGAFHF 133
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 58.6 bits (142), Expect = 2e-10
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +VKP + V +I + ++KG+ +V K + TPE A E + + + P P
Sbjct: 3 ERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGK-PF-FP 60
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV Y+ SGPV MV + +++ L+G +P ++ P ++R + V+ N I+G
Sbjct: 61 GLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESA---PGTIRGDFCVDVGRNVIHG 117
Query: 281 SRNEEEAARDIRFFFK 296
S + E A R+I +FK
Sbjct: 118 SDSVESAKREIALWFK 133
>gnl|CDD|147395 pfam05186, Dpy-30, Dpy-30 motif. This motif is found in a wide
variety of domain contexts. It is found in the Dpy-30
proteins hence the motifs name. It is about 40 residues
long and is probably fomed of two alpha-helices. It may
be a dimerisation motif analogous to pfam02197 (Bateman
A pers obs).
Length = 42
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 323 KIYLREFVYPTLQKGLAELVRMKPAHSYEWFVNWLLENDP 362
+ YL + V P L +GL EL + +P E+ +LL+N
Sbjct: 3 RQYLNDTVAPILLQGLTELAKERPEDPIEFLAEYLLKNRS 42
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 42.1 bits (99), Expect = 2e-04
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +KP + + +I + KGF +V K + E A + + +ER P
Sbjct: 89 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKER-PF-FN 146
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L ++ SGPV MV + I+ L+G DP K++ P ++R V N I+G
Sbjct: 147 GLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSE---PGTIRGDLAVVVGRNIIHG 203
Query: 281 SRNEEEAARDIRFFFK 296
S E A +I +FK
Sbjct: 204 SDGPETAKDEINLWFK 219
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional.
Length = 169
Score = 34.9 bits (80), Expect = 0.033
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 165 TLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITRE--ERDPVKVP 220
TL ++KP R + ++ + G IV K A + ++ + R V
Sbjct: 8 TLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVW 67
Query: 221 R-LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND------ 273
+ L+ ++ S PV V V+ +++ G +P K P ++R + +
Sbjct: 68 KSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEP---KLAIPGTIRGDFSYHSFNYANE 124
Query: 274 ----IMNAIYGSRNEEEAARDIRFFFKD 297
+ N I+ S NE++A R+I +FKD
Sbjct: 125 KGFSVYNVIHASANEDDALREIPIWFKD 152
>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated.
Length = 273
Score = 31.1 bits (71), Expect = 0.71
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 254 PDKAKRIYP-LSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDI-----IIEPSNAME 307
P + RI P ++ RA G + +GSR EE + + F +I I E +
Sbjct: 109 PCQVARIIPSITNRALSGASLFT---FGSRCSEEDQQKLERLFSNISTPLVIEEDITRVS 165
Query: 308 SDI-SCEPSSNSFLAHK 323
SDI SC P+ S+L +
Sbjct: 166 SDIVSCGPAFFSYLLQR 182
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 30.2 bits (68), Expect = 1.9
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 88 YHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLPDSTPNIVQERSEAESVKLD 147
G Y YN L P+ + PPP SSS + +P + + E S A S ++D
Sbjct: 272 LAGDPYKYNTLPPLPAQRNLTPPPTLYPQQPVSSSENYRIPRFSLSSSPESSNARSKRMD 331
>gnl|CDD|112775 pfam03976, PPK2, Polyphosphate kinase 2 (PPK2). Inorganic
polyphosphate (polyP) plays a role in metabolism and
regulation and has been proposed to serve as a energy
source in a pre-ATP world. In prokaryotes, the synthesis
and utilisation of polyP are catalyzed by PPK1, PPK2 and
polyphosphatases. Proteins with a single PPK2 domain
catalyze polyP-dependent phosphorylation of ADP to ATP,
whereas proteins containing 2 fused PPK2 domains
phosphorylate AMP to ADP. The structure of PPK2 from
Pseudomonas aeruginosa has revealed a a 3-layer
alpha/beta/alpha sandwich fold with an alpha-helical lid
similar to the structures of microbial thymidylate
kinases.
Length = 229
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 173 AFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVK 218
R + + E+ + E G +V K + E+ E F R DP+K
Sbjct: 119 FLREIPEFERMLTESGIRVV-KFWLSISDEEQLERFKERRN-DPLK 162
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 29.4 bits (66), Expect = 2.9
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 110 PPLPIWSLSGSSSGSVTLPDSTPNIVQERSEAESVKLDGDEVPAPIVQNLHCYEYTLALV 169
P IW + S S D V A + +LDGD +P P + H + Y +
Sbjct: 227 PDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAI--- 283
Query: 170 KPHAFRH 176
P+
Sbjct: 284 -PNDAVA 289
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 29.0 bits (66), Expect = 4.5
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 316 SNSFLAHKIYLREFVYPTLQKGLAEL-VRMKPAHSYE 351
++ L +Y+ F +P + KG A + +M AH+ E
Sbjct: 342 ADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKE 378
>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 388
Score = 28.3 bits (64), Expect = 6.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 83 QCLCMYHGIEYVYNGLNPIKVSKWPLPPPLPIWSLSGSSSGSVTLP 128
+Y + GLNP K K LP L +S + SS+ TLP
Sbjct: 219 HLFVVYPLLLKFLTGLNPFKFLKKILPALLTAFS-TASSAA--TLP 261
>gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1.
This model represents orotidine 5'-monophosphate
decarboxylase, the PyrF protein of pyrimidine nucleotide
biosynthesis. In many eukaryotes, the region hit by this
model is part of a multifunctional protein [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 214
Score = 27.7 bits (62), Expect = 8.8
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 224 CYMVSGPV--RVMVLAKQKAIRRWLHL---MGPVDPDK--AKRIYPLSLRAKYGVNDIM- 275
+ + GPV +KA +L L + D +R+ L + G + I+
Sbjct: 137 EFGLDGPVCSAEEAKEIRKATGDFLILTPGIRLDSKDADDQQRVVTLEDAKEAGADVIIV 196
Query: 276 -NAIYGSRNEEEAARDIR 292
IY + + EAA+ IR
Sbjct: 197 GRGIYAAEDPVEAAKRIR 214
>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze
electron transfer between an NAD(P)-binding domain of
the alpha/beta class and a discrete (usually N-terminal)
domain which varies in orientation with respect to the
NAD(P) binding domain. The N-terminal region may contain
a flavin prosthetic group (as in flavoenzymes) or use
flavin as a substrate. Ferredoxin is reduced in the
final stage of photosystem I. The flavoprotein
Ferredoxin-NADP+ reductase transfers electrons from
reduced ferredoxin to FAD (forming FADH2 via a
semiquinone intermediate) which then transfers a hydride
ion to convert NADP+ to NADPH.
Length = 218
Score = 27.6 bits (62), Expect = 9.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 189 FTIVKKKTFKFTPEQAAEFFITRE 212
K + + FTP QA E I +
Sbjct: 18 LRFDKPEGYDFTPGQATEVAIDKP 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.417
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,854,397
Number of extensions: 1936033
Number of successful extensions: 1877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1839
Number of HSP's successfully gapped: 40
Length of query: 377
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 279
Effective length of database: 6,590,910
Effective search space: 1838863890
Effective search space used: 1838863890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)