RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4316
(377 letters)
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 115 bits (290), Expect = 5e-32
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 162 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 219
+E T VKP + V +I + + KGF +V K + + E E + E R+
Sbjct: 4 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHY--AELRERPFY 61
Query: 220 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIY 279
RLV YM SGPV MV +R L+G +P A P ++R + + N I+
Sbjct: 62 GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIH 118
Query: 280 GSRNEEEAARDIRFFFKDI-IIEPSNAMESDI 310
GS + E A R+I +F+ ++ ++ +
Sbjct: 119 GSDSVESARREIALWFRADELLCWEDSAGHWL 150
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 114 bits (286), Expect = 2e-31
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +KP + V +I + ++KGF +V K + + E + +I + +D P
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI--DLKDRPFFP 61
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV YM SGPV MV ++ ++G +P +K P ++R + + N I+G
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHG 118
Query: 281 SRNEEEAARDIRFFFKDI-IIEPSNAMES 308
S + + A ++I +FK +++ +
Sbjct: 119 SDSVKSAEKEISLWFKPEELVDYKSCAHD 147
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 113 bits (283), Expect = 4e-31
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL L+KP + +I I+ KG TI + + E A++ + E
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHY--AEHEGKPFFG 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L+ ++ SGPV ++ +AI L G DP +A P ++R + + N ++G
Sbjct: 60 SLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAA--PGTIRGDFALETQFNLVHG 117
Query: 281 SRNEEEAARDIRFFF 295
S + E A R+I +F
Sbjct: 118 SDSAESAQREIALWF 132
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 112 bits (280), Expect = 1e-30
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL VKP + V D+ Q + +GFT+V K + AE + ++ R P
Sbjct: 6 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHY--QDLRRKPFYP 63
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L+ YM SGPV MV +R ++G D +A P ++R + V+ N I+
Sbjct: 64 ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRNVIHA 120
Query: 281 SRNEEEAARDIRFFFKD 297
S + E A R+I+ +F+
Sbjct: 121 SDSVEGAQREIQLWFQS 137
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 111 bits (279), Expect = 2e-30
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL+++KP + I +EKG V + + QA F+ + R
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARP--FFK 60
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV +M+SGPV +MVL + A+ +MG +P +A ++R + + N ++G
Sbjct: 61 DLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHG 117
Query: 281 SRNEEEAARDIRFFFKDIIIEP 302
S + E A +I +FF++ I
Sbjct: 118 SDSLENAKIEIAYFFRETEIHS 139
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 111 bits (278), Expect = 7e-30
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 46/178 (25%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV- 219
E TL ++KP A V++I ++ G IV K K +PE+ F+ + EE
Sbjct: 3 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 62
Query: 220 ------------------------------PRLVCYMVSGPVRVMVLAKQKAIRRWLHLM 249
LV YM SGP VMVL +A+ L+
Sbjct: 63 KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 122
Query: 250 GPVDPDKAKRIYPLSLRAKYGVND----------IMNAIYGSRNEEEAARDIRFFFKD 297
GP P A P ++R Y ++ + N ++ S + EA R+IRF+F++
Sbjct: 123 GPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFRE 177
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 109 bits (274), Expect = 1e-29
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +VKP + V +I ++KGF ++ K F+ E A E + ++ P
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHY--KDLSAKSFFP 63
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L+ Y+ SGPV M + L+G DP +A+ P ++R V N ++G
Sbjct: 64 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHG 120
Query: 281 SRNEEEAARDIRFFFKD 297
S + E R+I +FK+
Sbjct: 121 SDSPENGKREIGLWFKE 137
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 108 bits (271), Expect = 2e-29
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T ++KP R V +I + KGF I K + + E A + E R+ P
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHY--AEHREKPFFP 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV ++ SGPV MVL + +MG P A P ++R + N I+G
Sbjct: 60 GLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL---PGTIRGDFATTIDENVIHG 116
Query: 281 SRNEEEAARDIRFFFKD 297
S E+A R+I FF+
Sbjct: 117 SATLEDAQREIALFFRP 133
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 107 bits (267), Expect = 1e-28
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +KP + + +I + KGF +V K T + A + + +ER
Sbjct: 4 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF--N 61
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L ++ SGPV MV + I L+G DP K+ P ++R V N I+G
Sbjct: 62 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNIIHG 118
Query: 281 SRNEEEAARDIRFFFKD 297
S E A +I+ +FK
Sbjct: 119 SDGPETAKDEIKLWFKP 135
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 106 bits (265), Expect = 2e-28
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +VKP + + DI ++ KG +V K + E A E + E D
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHY--AEHEDKPFFD 60
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV ++ SGPV MV A R+ LMG D A P ++R YG + N I+G
Sbjct: 61 GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHNLIHG 117
Query: 281 SRNEEEAA--RDIRFFFKD 297
S +E+E A R+I FF D
Sbjct: 118 SDHEDEGANEREIALFFDD 136
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 105 bits (264), Expect = 3e-28
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T VKP V +I ++KGF +V K T + A + +ER
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
++ SGPV MV + + ++G +P + P S+R +GV+ N I G
Sbjct: 64 V--SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRNIIAG 118
Query: 281 SRNEEEAARDIRFFFKD 297
S + E A R+I +FK
Sbjct: 119 SDSVESANREIALWFKP 135
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 105 bits (264), Expect = 3e-28
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E + ++KP + V I + ++KG+ ++ K T E E + +E D
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHY--KELSDQPFFK 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV Y+ GPV MV +++ L+G +P + ++R + + N I+G
Sbjct: 60 NLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKNVIHG 116
Query: 281 SRNEEEAARDIRFFFKD 297
S + A ++I +FK
Sbjct: 117 SDSVASANKEINIWFKA 133
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 104 bits (260), Expect = 1e-27
Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T ++KP + + ++ ++KGFT+ K A + + +
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFF--S 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV Y+VSGPV M+ + + ++G +P ++ P ++R + ++ N I+G
Sbjct: 60 GLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIHG 116
Query: 281 SRNEEEAARDIRFFFKDIIIEPSNAMES 308
S + E A ++I +F D + +++
Sbjct: 117 SDSVESARKEIALWFPDGPVNWQSSVHP 144
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 102 bits (255), Expect = 6e-27
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E T +VKP + V ++ + + KG + K + + AA +
Sbjct: 2 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFF--G 59
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
LV SGPV MV A ++G +P A P ++R +GV+ NAI+G
Sbjct: 60 GLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIHG 116
Query: 281 SRNEEEAARDIRFFFKD 297
S + AA++I FF
Sbjct: 117 SDSAGSAAKEIGAFFGG 133
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 96.6 bits (240), Expect = 8e-25
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Query: 163 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 220
E TL ++KP A + +I ++KG IV K E A + + E R+
Sbjct: 3 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHY--EEHREKPFFK 60
Query: 221 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYG 280
L+ Y+ PV VMVL + A+ + G DP A + I N I+
Sbjct: 61 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHA 120
Query: 281 SRNEEEAARDIRFFFKD 297
S ++E A R+I FFK
Sbjct: 121 SDSKESAEREISLFFKP 137
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 95.9 bits (238), Expect = 9e-25
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 165 TLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 222
TL L+KP AF V +I I++K F IV K + P E +E +
Sbjct: 3 TLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHY-KEHSEQSYFNDN 61
Query: 223 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNAIYGSR 282
+MVSGP+ +V AI + L G + P ++R + N I+ S
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGN-------ILTPGTIRGDLANDIRENLIHASD 114
Query: 283 NEEEAARDIRFFF 295
+E+ A +I +F
Sbjct: 115 SEDSAVDEISIWF 127
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 27.0 bits (59), Expect = 3.6
Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 22/167 (13%)
Query: 198 KFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA-KQKAIRRWLHLMGPVDPD- 255
++ P AA+ ITR +RD + + VSG + +A K+K W G VDP
Sbjct: 106 RWGPNHAADPIITRWKRDSSGN--KIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGE 163
Query: 256 ----KAKRIYPLSLRAKYGVNDIMNAIYGSRNEEEAARDIRFFFKDIIIEPSNAMESDIS 311
KR + + + EE+ + I + + +
Sbjct: 164 KISATLKRE----FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDN 219
Query: 312 CEPSSNSFLAHKIYLREFVYPTLQKG----------LAELVRMKPAH 348
+ + H L+ G + + +++ +H
Sbjct: 220 AWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH 266
>d3coxa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 132
Score = 26.0 bits (57), Expect = 5.0
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 90 GIEYVYNGLNPIKVSKWPLPPPLPIWSL 117
GI+ + PI PLP L +
Sbjct: 29 GIDNWADPTAPIFAEIAPLPAGLETYVS 56
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 194
Score = 25.9 bits (57), Expect = 6.2
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 241 AIRR----WLHLMGPVDPDKAKRIYPLSLRAKYG-----VNDIMNAIYGSRNEEE 286
IRR +L L+GP P K+ I +R I A+ +
Sbjct: 43 GIRRDVEVYLLLLGPPSPPKSILIKGDEVRRMSPDERNVAGHIKKALAVECGKSW 97
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 26.3 bits (57), Expect = 6.6
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 316 SNSFLAHKIYLREFVYPTLQKGLAEL-VRMKPAHSYE 351
+ IY+ F YP + KG A + +M AH+ E
Sbjct: 345 ARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPE 381
>d1n4wa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Streptomyces sp.
[TaxId: 1931]}
Length = 132
Score = 25.6 bits (56), Expect = 6.6
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 90 GIEYVYNGLNPIKVSKWPLPPPLPIWSL 117
GI+ N + + P+P L W
Sbjct: 29 GIDAWDNSDSSVFAEIAPMPAGLETWVS 56
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 375
Score = 26.1 bits (56), Expect = 7.2
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 174 FRHVEDIEQTIQEKGFTIVKKKTFKFTP--------EQAAEFFITREE 213
FR ++D+E TI+E ++ + K T + E IT EE
Sbjct: 315 FRDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEE 362
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.417
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,514,940
Number of extensions: 74286
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 29
Length of query: 377
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,213,086
Effective search space: 351794940
Effective search space used: 351794940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)