BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4317
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
+ FLL+T N ++ ++ A +K S+ N T F IHGFT+ + +
Sbjct: 36 NTRFLLYTNENQNSYQLITATDIATIKASNFNLNRKTRFIIHGFTDSGENSWLSDMCKNM 95
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQ-SKGFPLHKMHVIGFS 137
+ N I VDW G S Y+ A+ N +VG +A ++ L S + +H+IG S
Sbjct: 96 FQVEKVNCICVDWKGGSK-AQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHS 154
Query: 138 LGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTD-GGIL 196
LGA AG GK L + + RITGLDPA P + T E L DA FVDVIHTD IL
Sbjct: 155 LGAHTAGEAGKRLNGL--VGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPIL 212
Query: 197 -----GFPVPIGHADFFPNGGFPVQPGC 219
G +GH DFFPNGG + PGC
Sbjct: 213 PSLGFGMSQKVGHMDFFPNGGKDM-PGC 239
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 104/213 (48%), Gaps = 14/213 (6%)
Query: 16 EPDDIT--FLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTT 73
P D+ FLL+T N + + A + S+ T F IHGF ++
Sbjct: 31 SPKDVNTRFLLYTNENPNNFQEV-AADSSSISGSNFKTNRKTRFIIHGFIDKGEENWLAN 89
Query: 74 VKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMH 132
V + N I VDW G S YT A+ N IVG +A F+ FLQS G+ +H
Sbjct: 90 VCKNLFKVESVNCICVDWKGGSR-TGYTQASQNIRIVGAEVAYFVEFLQSAFGYSPSNVH 148
Query: 133 VIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTD 192
VIG SLGA AG G+ T + RITGLDPA P + T L DA FVDVIHTD
Sbjct: 149 VIGHSLGAHAAGEAGRR--TNGTIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTD 206
Query: 193 GGIL------GFPVPIGHADFFPNGGFPVQPGC 219
G + G +GH DFFPNGG + PGC
Sbjct: 207 GAPIVPNLGFGMSQVVGHLDFFPNGGVEM-PGC 238
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 101/210 (48%), Gaps = 12/210 (5%)
Query: 22 FLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAYLRR 81
FLL+T N + IL ++ S+ T F IHGF ++ + T +
Sbjct: 64 FLLYTNENPNNFQILLLSDPSTIEASNFQMDRKTRFIIHGFIDKGDESWVTDMCKKLFEV 123
Query: 82 GDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFSLGA 140
+ N I VDW S YT AA N +VG +A + L ++ +P K+H+IG SLGA
Sbjct: 124 EEVNCICVDWKKGSQAT-YTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGA 182
Query: 141 EIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGIL---- 196
+AG G L RITGLDP + T E L DADFVDVIHTD L
Sbjct: 183 HVAGEAGSK---TPGLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIPFL 239
Query: 197 --GFPVPIGHADFFPNGGFPVQPGCHIRQL 224
G +GH DFFPNGG + PGC L
Sbjct: 240 GFGTNQQMGHLDFFPNGGESM-PGCKKNAL 268
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 16 EPDDITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVK 75
E + FLL+T N + ++ A +K S+ T F IHGF ++ + +
Sbjct: 33 EEVNTRFLLYTNKNPDSYQLITARDVATIKSSNFQSSRKTHFVIHGFRDRGEDSWPSDMC 92
Query: 76 DAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVI 134
L+ N I VDWS A YT A N IVG A I+ L ++ + +H+I
Sbjct: 93 KKILQVETTNCISVDWSS-GAKAEYTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHII 151
Query: 135 GFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGG 194
G SLGA AG G+ L ++ R+TGLDPA P + E L DA FVDVIHTD
Sbjct: 152 GHSLGAHTAGEAGRRL--EGRVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDAS 209
Query: 195 IL------GFPVPIGHADFFPNGGFPVQPGCH 220
+ G +GH DFFPNGG + PGC
Sbjct: 210 PMLPSLGFGMSQKVGHMDFFPNGGKQM-PGCK 240
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 104/210 (49%), Gaps = 14/210 (6%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
D FLL+T N + L A + S+ T F IHGF ++ + + +
Sbjct: 36 DTRFLLYTNQNQNNYQELVADPST-ITNSNFRMDRKTRFIIHGFIDKGEEDWLSNICKNL 94
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFS 137
+ N I VDW G S YT A+ N IVG +A F+ L+S G+ +HVIG S
Sbjct: 95 FKVESVNCICVDWKGGSR-TGYTQASQNIRIVGAEVAYFVEVLKSSLGYSPSNVHVIGHS 153
Query: 138 LGAEIAGFTGKAL-GTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGIL 196
LG+ AG G+ GT++ RITGLDPA P + T L DA FVDVIHTD +
Sbjct: 154 LGSHAAGEAGRRTNGTIE---RITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDAAPI 210
Query: 197 ------GFPVPIGHADFFPNGGFPVQPGCH 220
G +GH DFFPNGG + PGC
Sbjct: 211 IPNLGFGMSQTVGHLDFFPNGGKQM-PGCQ 239
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 107/215 (49%), Gaps = 17/215 (7%)
Query: 17 PDDI--TFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTV 74
P+DI FLL+T N + + A +K S+ T F +HGF ++ GE G +
Sbjct: 32 PEDIDTRFLLYTNENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGFIDK--GEDGWLL 89
Query: 75 K--DAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKM 131
+ N I VDW S YT A+ NT +VG IA ++ L ++ G+ +
Sbjct: 90 DMCKKMFQVEKVNCICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENV 148
Query: 132 HVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHT 191
H+IG SLGA + G G+ L + RITGLDPA P + E L DA FVDVIHT
Sbjct: 149 HLIGHSLGAHVVGEAGRRLE--GHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHT 206
Query: 192 DGGIL------GFPVPIGHADFFPNGGFPVQPGCH 220
D + G +GH DFFPNGG + PGC
Sbjct: 207 DSAPIIPYLGFGMSQKVGHLDFFPNGGKEM-PGCQ 240
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 95/210 (45%), Gaps = 12/210 (5%)
Query: 22 FLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAYLRR 81
FLL+T N + L + S+ T F IHGF ++ + +
Sbjct: 39 FLLYTNKNPNNFQTLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKV 98
Query: 82 GDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFSLGA 140
+ N I VDW S YT AA N +VG +A + L + + ++ +IG SLGA
Sbjct: 99 EEVNCICVDWKKGSQTS-YTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGA 157
Query: 141 EIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGIL---- 196
+AG G L RITGLDP + T E L DADFVDVIHTD L
Sbjct: 158 HVAGEAG---SRTPGLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFL 214
Query: 197 --GFPVPIGHADFFPNGGFPVQPGCHIRQL 224
G +GH DFFPNGG + PGC L
Sbjct: 215 GFGTSQQMGHLDFFPNGGEEM-PGCKKNAL 243
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 17 PDDI--TFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTV 74
P+DI FLL+T N + ++ ++ S+ T F IHGF ++A + +
Sbjct: 34 PEDIDTRFLLYTNENPNNFQLITGTEPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPSDM 93
Query: 75 KDAYLRRGDFNIILVDWS-GLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMH 132
N I VDW G A YT A N +VG A I+ L ++ G+ L +H
Sbjct: 94 CKKMFEVEKVNCICVDWRHGSRAM--YTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVH 151
Query: 133 VIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTD 192
VIG SLGA A G+ LG RITGLDPA P + E L DA FVDVIHTD
Sbjct: 152 VIGHSLGAHTAAEAGRRLGGRVG--RITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTD 209
Query: 193 GGIL------GFPVPIGHADFFPNGGFPVQPGCHIRQL 224
+ G +GH DFFPNGG + PGC L
Sbjct: 210 SSPIVPSLGFGMSQKVGHLDFFPNGGKEM-PGCKKNVL 246
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 17 PDDI--TFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTV 74
P+DI FLL+T N + ++ ++ S+ T F IHGF ++A + +
Sbjct: 32 PEDIDTRFLLYTNENPNNFQLITGTEPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPSDM 91
Query: 75 KDAYLRRGDFNIILVDWS-GLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMH 132
N I VDW G A YT A N +VG A I+ L ++ G+ L +H
Sbjct: 92 CKKMFEVEKVNCICVDWRHGSRAM--YTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVH 149
Query: 133 VIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTD 192
VIG SLGA A G+ LG RITGLDPA P + E L DA FVDVIHTD
Sbjct: 150 VIGHSLGAHTAAEAGRRLGGRVG--RITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTD 207
Query: 193 GGIL------GFPVPIGHADFFPNGGFPVQPGCHIRQL 224
+ G +GH DFFPNGG + PGC L
Sbjct: 208 SSPIVPSLGFGMSQKVGHLDFFPNGGKEM-PGCKKNVL 244
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 104/218 (47%), Gaps = 16/218 (7%)
Query: 16 EPDDITFLLFTRANSHTPDILR--AGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTT 73
E + FLL+T N PD + ++ S+ N T F IHGF ++ +T
Sbjct: 33 EKVNTRFLLYTNEN---PDNFQEIVADPSTIQSSNFNTGRKTRFIIHGFIDKGEESWLST 89
Query: 74 VKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMH 132
+ + N I VDW S Y+ A+ N IVG +A + LQS + +H
Sbjct: 90 MCQNMFKVESVNCICVDWKSGSRTA-YSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVH 148
Query: 133 VIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTD 192
+IG SLG+ AG G+ T + RITGLDPA P + T L DA FVDVIHTD
Sbjct: 149 IIGHSLGSHAAGEAGRR--TNGAVGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIHTD 206
Query: 193 GG----ILGFPVP--IGHADFFPNGGFPVQPGCHIRQL 224
LGF + GH DFFPNGG + PGC L
Sbjct: 207 IAPFIPNLGFGMSQTAGHLDFFPNGGKEM-PGCQKNVL 243
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 150 LGTVDKLPRITGLDP-AFPLYGFTGGEGHLSKEDADFVDVIHTDGGILGFP 199
L +V L + DP A L FT HL++ D F +++ DG ++ P
Sbjct: 183 LRSVKXLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 28 ANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNII 87
A S ++ AG + + + + TV +HG A G + + L + +I
Sbjct: 11 ATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVI 70
Query: 88 LVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA-GFT 146
L+D G N+ + + + + + + L + K+H++G S+G + FT
Sbjct: 71 LLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLD-----IAKIHLLGNSMGGHSSVAFT 125
Query: 147 GKALGTVDKLPRITG 161
K V KL + G
Sbjct: 126 LKWPERVGKLVLMGG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,962,086
Number of Sequences: 62578
Number of extensions: 365795
Number of successful extensions: 909
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 22
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)