RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4317
(235 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 238 bits (610), Expect = 3e-79
Identities = 103/213 (48%), Positives = 124/213 (58%), Gaps = 5/213 (2%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
D+ FLL+TR N + P +L A LK S+ N T F IHG+T + ++ AY
Sbjct: 2 DVRFLLYTRENPNCPQLLFADDPSSLKNSNFNPSRPTRFIIHGWTSSGEESWISDLRKAY 61
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFS 137
L RGD+N+I+VDW A P Y A NT +VG +A F+ FL G L +H+IG S
Sbjct: 62 LSRGDYNVIVVDWGRG-ANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHS 120
Query: 138 LGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGILG 197
LGA +AGF GK L KL RITGLDPA PL+ E L DA FVDVIHTDGG+LG
Sbjct: 121 LGAHVAGFAGKRLNG--KLGRITGLDPAGPLFSGADPEDRLDPSDAQFVDVIHTDGGLLG 178
Query: 198 FPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSI 230
F PIGHADF+PNGG QPGC L
Sbjct: 179 FSQPIGHADFYPNGGRD-QPGCPKDILSSDFVA 210
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 167 bits (426), Expect = 6e-51
Identities = 79/212 (37%), Positives = 107/212 (50%), Gaps = 11/212 (5%)
Query: 18 DDITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDA 77
++ FLL+T N + ++ G ++ S+ N T IHGFT++ ES +
Sbjct: 36 IEVRFLLYTNENPNNCQLITTGLPSTIENSNFNTSKKTRAIIHGFTDKGQEESWLSDMCK 95
Query: 78 YL-RRGDFNIILVDW-SGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVI 134
L + N+I+VDW SG + F Y A N +VG +A + L+ + +H+I
Sbjct: 96 NLFQVEGVNVIVVDWGSGSTTF--YRQATLNVRVVGAEVAKLLVELEEELNVSPENVHLI 153
Query: 135 GFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGG 194
G SLGA +AG G+ KL RITGLDPA P + T L DADFVD IHTD
Sbjct: 154 GHSLGAHVAGEAGRRTKGKTKLGRITGLDPAGPYFKGTPELTRLDPGDADFVDAIHTDTR 213
Query: 195 I-----LGFPVPIGHADFFPNGGFPVQPGCHI 221
+G +GH DFFPNGG QPGC
Sbjct: 214 PIPGLGMGTSQRVGHVDFFPNGG-SEQPGCQN 244
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 131 bits (331), Expect = 6e-36
Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 14/200 (7%)
Query: 36 LRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTT--VKDAYLRRGDFNIILVDWSG 93
+ G + + N + T IHG+T ES V Y R N+I+VDW
Sbjct: 24 IVPGQPDSIADCNFNHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDW-- 81
Query: 94 LS-AFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFSLGAEIAGFTGKALG 151
LS A Y +A T +VG +A F+ ++Q + +P +H++G+SLGA +AG G
Sbjct: 82 LSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAG--SL 139
Query: 152 TVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTD-----GGILGFPVPIGHAD 206
T K+ RITGLDPA P + + LS +DADFVDV+HT+ +G P+GH D
Sbjct: 140 TKHKVNRITGLDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHID 199
Query: 207 FFPNGGFPVQPGCHIRQLLR 226
+PNGG QPGC I++ L
Sbjct: 200 IYPNGG-TFQPGCDIQETLL 218
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 75.6 bits (186), Expect = 3e-17
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 106 NTHIVGHFIAAFIRFLQSKG---FPLHKMHVIGFSLGAEIAGFTGK--ALGTVDKLPRIT 160
+ +A + L +P +K+HV G SLG +AG G + +L R+
Sbjct: 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVY 61
Query: 161 GLDPAFPL-YGFTGGEGHLSKEDADFVDVIHTDGGILG------FPVPIGHADFFPNGGF 213
P F E L DA FVD I D I+ P G A+F+ NGG
Sbjct: 62 TFGPPRVGNAAF--AEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGK 119
Query: 214 PVQPGCHIRQ 223
C
Sbjct: 120 SQPGCCKNVL 129
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 34.4 bits (79), Expect = 0.027
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 84 FNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
F++I D G F + +A + L L K++++G S+G IA
Sbjct: 1 FDVIAFDLRG---FGRSSPPKDFADYRFDDLAEDLEALLDA-LGLDKVNLVGHSMGGLIA 56
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 34.2 bits (77), Expect = 0.042
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 42 MDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPW 99
+ L + +HGF ++ K + +I D G S
Sbjct: 10 VRLAYREAGGGGPPLVLLHGFPGSSSVWRPV-FKVLPALAARYRVIAPDLRGHGRSDPAG 68
Query: 100 YTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
Y+ +A +AA + L L K+ ++G S+G +A
Sbjct: 69 YSLSAYAD-----DLAALLDALG-----LEKVVLVGHSMGGAVA 102
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 31.6 bits (72), Expect = 0.16
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFI 114
V +HG + E+ + A RG +N++ VD+ G A +A
Sbjct: 1 LVVLLHGAG--GDPEAYAPLARALASRG-YNVVAVDYPGHGASLGAPDAE---------- 47
Query: 115 AAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
L ++ ++G SLG +A
Sbjct: 48 ----AVLADAPLDPERIVLVGHSLGGGVA 72
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 30.9 bits (70), Expect = 0.39
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 56 VFYIHGFTEQANGESGTTVKD--AYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHF 113
V +HG G S + + L G + ++ D G +
Sbjct: 1 VVLLHGA-----GGSAESWRPLAEALAAG-YRVLAPDLPGHGDSDGPPRTPYSLEDDAAD 54
Query: 114 IAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+AA + L L + ++G SLG +A
Sbjct: 55 LAALLDAL-----GLGPVVLVGHSLGGAVA 79
>gnl|CDD|235384 PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional.
Length = 326
Score = 30.6 bits (70), Expect = 0.65
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 79 LRRGDF-NIILVDWSGLSAFPWYTNAATNT-HIVGHFIAAFIRFLQ---SKGFPLHKMHV 133
L G F ++ + +GL++FP +VG + L+ K P+ +
Sbjct: 149 LEDGPFMTMLALGAAGLASFPPPALVGAVLPLLVGFILGNLDPELRQFLGKAVPV----L 204
Query: 134 I---GFSLGAEI-------AGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEG 176
I F+LG I AG +G LG +TG+ P + GG
Sbjct: 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVA--VTGI-PLYLADRLIGGGN 254
>gnl|CDD|236932 PRK11564, PRK11564, stationary phase inducible protein CsiE;
Provisional.
Length = 426
Score = 29.2 bits (66), Expect = 2.1
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 13 PINEPDDITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQAN 67
P++EP + LLF+ PD LR H+ D ++ +++ ++ F E
Sbjct: 204 PLDEPLFLA-LLFSML--RAPDPLRDAHQRDRRLRQAIKRL-----VNRFRELGG 250
>gnl|CDD|224607 COG1693, COG1693, Repressor of nif and glnA expression
[Transcription].
Length = 325
Score = 28.9 bits (65), Expect = 2.5
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 160 TGLDPA----FPLYGFTGGEGHLSK-EDADF---VDVIHTDGGILGFPVPIGH 204
GL PA FP Y E L E A + V +LG PV
Sbjct: 231 DGLVPANLRYFPRYARDDAERILRILEKAGLRGIIKVGEPSERVLGLPVADRK 283
>gnl|CDD|117815 pfam09270, BTD, Beta-trefoil DNA-binding domain. Members of this
family of DNA binding domains adopt a beta-trefoil
fold, that is, a capped beta-barrel with internal
pseudo threefold symmetry. In the DNA-binding protein
LAG-1, it also is the site of mutually exclusive
interactions with NotchIC (and the viral protein EBNA2)
and co-repressors (SMRT/N-Cor and CIR).
Length = 152
Score = 27.9 bits (62), Expect = 3.6
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 15/80 (18%)
Query: 17 PDDITFLLFTRANSHTPDILRAGHEMDLKMS------HMNRQMTTVFYIHGFTEQANGES 70
LF R LR+ + H + F IH + N
Sbjct: 4 ASGSKVALFNR--------LRSQTVSTRYLHVENGAFHASSAQWGAFTIHLLDDDRNESD 55
Query: 71 GTTVKDAYLRRGDFNIILVD 90
V++ YL G + LV
Sbjct: 56 EFDVREGYLCYGSV-VKLVC 74
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 27.9 bits (63), Expect = 3.9
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 53 MTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVD--WSGLSAFPWYTNAATNTHIV 110
+ ++HGF G L F + +D G S P I
Sbjct: 2 KPVLVFLHGFL----GSGADWQALIELLGPHFRCLAIDLPGHGSSQSPSDIERYDFEEIA 57
Query: 111 GHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+A + L + F ++G+S+G IA
Sbjct: 58 QLLLATLLDQLGIEPF-----FLVGYSMGGRIA 85
>gnl|CDD|234674 PRK00168, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 159
Score = 27.4 bits (62), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 36 LRAGH--EMDLKMSHMNRQMT----TVF 57
LRA E + +M+ MNR++ TVF
Sbjct: 89 LRAVSDFEYEFQMAGMNRKLAPEIETVF 116
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 28.4 bits (64), Expect = 4.2
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 122 QSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPR-ITGLDPAFPLYGFTGGEGHLSK 180
+++G +M+++ G I +G P +T +D P GE +L
Sbjct: 423 EARGLMGTQMNILTPHYGGPIVAPIQDTVG----GPYLLTIVDAKLPST--PVGEIYLKD 476
Query: 181 EDADFVDVIH 190
E AD +
Sbjct: 477 EYADDREKAE 486
>gnl|CDD|198082 smart01014, ARID, ARID/BRIGHT DNA binding domain. Members of the
recently discovered ARID (AT-rich interaction domain)
family of DNA-binding proteins are found in fungi and
invertebrate and vertebrate metazoans. ARID-encoding
genes are involved in a variety of biological processes
including embryonic development, cell lineage gene
regulation and cell cycle control. Although the specific
roles of this domain and of ARID-containing proteins in
transcriptional regulation are yet to be elucidated,
they include both positive and negative transcriptional
regulation and a likely involvement in the modification
of chromatin structure. The basic structure of the ARID
domain domain appears to be a series of six
alpha-helices separated by beta-strands, loops, or
turns, but the structured region may extend to an
additional helix at either or both ends of the basic
six. Based on primary sequence homology, they can be
partitioned into three structural classes: Minimal ARID
proteins that consist of a core domain formed by six
alpha helices; ARID proteins that supplement the core
domain with an N-terminal alpha-helix; and Extended-ARID
proteins, which contain the core domain and additional
alpha-helices at their N- and C-termini.
Length = 88
Score = 26.4 bits (59), Expect = 4.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 113 FIAAFIRFLQSKGFPLHKMHVIG 135
F+ +F++ +G PL K+ VIG
Sbjct: 6 FLDRLRKFMEKRGTPLDKIPVIG 28
>gnl|CDD|176890 cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the
oxygenase alpha subunit of naphthalene 1,2-dioxygenase
(NDO) and related aromatic ring hydroxylating
dioxygenases. C-terminal catalytic domain of the
oxygenase alpha subunit of naphthalene 1,2-dioxygenase
(NDO) and related Rieske-type non-heme iron aromatic
ring-hydroxylating oxygenases (RHOs, also known as
aromatic ring hydroxylating dioxygenases). This domain
binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to
catalyze the addition of hydroxyl groups to the aromatic
ring, an initial step in the oxidative degradation of
aromatic compounds. RHOs are composed of either two or
three protein components, and are comprised of an
electron transport chain (ETC) and an oxygenase. The ETC
transfers reducing equivalents form the electron donor
to the oxygenase component, which in turn transfers
electrons to the oxygen molecules. The oxygenase
components are oligomers, either (alpha)n or
(alpha)n(beta)n. The alpha subunits are the catalytic
components and have an N-terminal domain, which binds a
Rieske-like 2Fe-2S cluster, and a C-terminal domain
which binds the non-heme Fe(II). The Fe(II) is
co-ordinated by conserved His and Asp residues. Proteins
belonging to this subgroup include the terminal
oxygenase alpha subunits of biphenyl dioxygenase, cumene
dioxygenase from Pseudomonas fluorescens IP01,
ethylbenzene dioxygenase, naphthalene 1,2-dioxygenase,
nitrobenzene dioxygenase from Comamonas sp. strain
JS765, toluene 2,3-dioxygenase from Pseudomonas putida
F1, dioxin dioxygenase of Sphingomonas sp. Strain RW1,
and the polycyclic aromatic hydrocarbons (PAHs)degrading
ring-hydroxylating dioxygenase from Sphingomonas CHY-1.
This subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 206
Score = 27.6 bits (62), Expect = 4.9
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 194 GILGFPVPIGHADFFPNGGFPVQPGCHIRQ 223
G+ F H FPN F +R
Sbjct: 67 GLGFFLDSPQHGTIFPNLSFLPGYFNTLRV 96
>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase/alanine racemase; Provisional.
Length = 822
Score = 28.0 bits (63), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 112 HFIAAFIRFLQSKG---FPLH-----KMHVIGF 136
+ AFI+ Q KG +P+H MH +GF
Sbjct: 560 RLLDAFIKAAQKKGITGYPIHIKIDTGMHRLGF 592
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 27.3 bits (61), Expect = 6.9
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 114 IAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPL 168
I I G P ++ + GFS GA +A +T L I A PL
Sbjct: 87 IEELIDAELKTGIPASRIIIGGFSQGAAVALYTALTSPQ--PLGGIIAFSGALPL 139
>gnl|CDD|180387 PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.
Length = 434
Score = 27.4 bits (61), Expect = 7.0
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 31/89 (34%)
Query: 105 TNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDP 164
T T ++ +AAF G P+ KM G G TG GT+DKL I G
Sbjct: 90 TTTLVLAPLVAAF-------GVPVAKMSGRGL-------GHTG---GTIDKLESIKGF-- 130
Query: 165 AFPLYGFTGGEGHLSKEDADFVDVIHTDG 193
H+ DF+ +++ +
Sbjct: 131 ------------HVEISQEDFIKLVNENK 147
>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase.
Length = 484
Score = 27.1 bits (60), Expect = 8.8
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 93 GLSAFPWY-TNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVI-GFSLGAEIAGFTG--- 147
+ P Y N+ + + G AA I LQ + + ++ G +LG A + G
Sbjct: 254 VTAELPIYLANSLNSLRLEGQKTAA-IEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKM 312
Query: 148 -KALGTVDKLPRITGLDP--AFPLYG-FTGGEGHLS--KEDADFVDVIHTDGGILGFPVP 201
K LG VD+LPR+ A PLY + G K + F I +G PV
Sbjct: 313 CKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQ-----IGDPVS 367
Query: 202 IGHA 205
I A
Sbjct: 368 IDRA 371
>gnl|CDD|172537 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase;
Provisional.
Length = 329
Score = 27.2 bits (60), Expect = 9.3
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 138 LGAEIAGFTGKALGTVDKLPRITG---------LDPAFPLYGFTGGEGHLSKEDADFVDV 188
+G + F K V L + T +P Y F G G ++KE A +
Sbjct: 215 VGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELYDYSF-GEYGKITKEVAKLIRS 273
Query: 189 IHTDGGILGFPVPIGHA 205
+ T G++ PV G A
Sbjct: 274 VGTMEGLILDPVYTGKA 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.143 0.466
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,572,513
Number of extensions: 1219961
Number of successful extensions: 1468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 35
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)