RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4317
(235 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 222 bits (568), Expect = 5e-71
Identities = 77/224 (34%), Positives = 103/224 (45%), Gaps = 11/224 (4%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
+ FLL+T N + ++ A +K S+ T F IHGF ++ + +
Sbjct: 36 NTRFLLYTNKNPDSYQLITARDVATIKSSNFQSSRKTHFVIHGFRDRGEDSWPSDMCKKI 95
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFS 137
L+ N I VDWS A YT A N IVG A I+ L ++ + +H+IG S
Sbjct: 96 LQVETTNCISVDWSSG-AKAEYTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHS 154
Query: 138 LGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGIL- 196
LGA AG G+ L ++ R+TGLDPA P + E L DA FVDVIHTD +
Sbjct: 155 LGAHTAGEAGRRLE--GRVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPML 212
Query: 197 -----GFPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSIEHFCE 235
G +GH DFFPNGG PGC I +
Sbjct: 213 PSLGFGMSQKVGHMDFFPNGGKQ-MPGCKRSSFSTFIDINGIWQ 255
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 216 bits (552), Expect = 8e-69
Identities = 76/208 (36%), Positives = 102/208 (49%), Gaps = 11/208 (5%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
+ FLL+T N ++ ++ A +K S+ N T F IHGFT+ + +
Sbjct: 36 NTRFLLYTNENQNSYQLITATDIATIKASNFNLNRKTRFIIHGFTDSGENSWLSDMCKNM 95
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFS 137
+ N I VDW G + Y+ A+ N +VG +A ++ L + + +H+IG S
Sbjct: 96 FQVEKVNCICVDWKGG-SKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHS 154
Query: 138 LGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGI-- 195
LGA AG GK L + RITGLDPA P + T E L DA FVDVIHTD
Sbjct: 155 LGAHTAGEAGKRLN--GLVGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPIL 212
Query: 196 ----LGFPVPIGHADFFPNGGFPVQPGC 219
G +GH DFFPNGG PGC
Sbjct: 213 PSLGFGMSQKVGHMDFFPNGGKD-MPGC 239
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 214 bits (545), Expect = 1e-67
Identities = 77/224 (34%), Positives = 103/224 (45%), Gaps = 11/224 (4%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
D FLL+T N + + A +K S+ T F +HGF ++ +
Sbjct: 36 DTRFLLYTNENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKM 95
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFS 137
+ N I VDW + YT A+ NT +VG IA ++ L ++ G+ +H+IG S
Sbjct: 96 FQVEKVNCICVDWRRG-SRTEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHS 154
Query: 138 LGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGIL- 196
LGA + G G+ L + RITGLDPA P + E L DA FVDVIHTD +
Sbjct: 155 LGAHVVGEAGRRLE--GHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPII 212
Query: 197 -----GFPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSIEHFCE 235
G +GH DFFPNGG PGC L I E
Sbjct: 213 PYLGFGMSQKVGHLDFFPNGGKE-MPGCQKNILSTIVDINGIWE 255
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 211 bits (537), Expect = 2e-66
Identities = 74/224 (33%), Positives = 98/224 (43%), Gaps = 12/224 (5%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
FLL+T N + L + S+ T F IHGF ++ +
Sbjct: 36 GTRFLLYTNKNPNNFQTLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEENWLLDMCKNM 95
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFS 137
+ + N I VDW + YT AA N +VG +A + L + + ++ +IG S
Sbjct: 96 FKVEEVNCICVDWKKG-SQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHS 154
Query: 138 LGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGIL- 196
LGA +AG G L RITGLDP + T E L DADFVDVIHTD L
Sbjct: 155 LGAHVAGEAGSRTP---GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLI 211
Query: 197 -----GFPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSIEHFCE 235
G +GH DFFPNGG PGC L + ++ E
Sbjct: 212 PFLGFGTSQQMGHLDFFPNGGEE-MPGCKKNALSQIVDLDGIWE 254
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 209 bits (534), Expect = 5e-66
Identities = 74/224 (33%), Positives = 100/224 (44%), Gaps = 12/224 (5%)
Query: 19 DITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY 78
+ FLL+T N + ++ S+ N T F IHGF ++ +T+
Sbjct: 36 NTRFLLYTNENPDNFQEIV-ADPSTIQSSNFNTGRKTRFIIHGFIDKGEESWLSTMCQNM 94
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK-GFPLHKMHVIGFS 137
+ N I VDW + Y+ A+ N IVG +A + LQS + +H+IG S
Sbjct: 95 FKVESVNCICVDWKSG-SRTAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHS 153
Query: 138 LGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGIL- 196
LG+ AG G+ + RITGLDPA P + T L DA FVDVIHTD
Sbjct: 154 LGSHAAGEAGRRTN--GAVGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFI 211
Query: 197 -----GFPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSIEHFCE 235
G GH DFFPNGG PGC L + I+ +
Sbjct: 212 PNLGFGMSQTAGHLDFFPNGGKE-MPGCQKNVLSQIVDIDGIWQ 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 6e-07
Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 69/234 (29%)
Query: 24 LFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAY----- 78
++ RA++H D G + + IH F GE G +++ Y
Sbjct: 1645 VWNRADNHFKDTY--G----FSILDIVINNPVNLTIH-FG----GEKGKRIRENYSAMIF 1693
Query: 79 -------------LRRGDFNIILVDWSG----LSAFPWYTNAATNTHIVGHFIAAFIRFL 121
+ + + + LSA +T A + AAF L
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-TQFTQPA----LTLMEKAAF-EDL 1747
Query: 122 QSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKE 181
+SKG G SLG E A AL ++ A +S E
Sbjct: 1748 KSKGLIPADATFAGHSLG-EYA-----ALASL-----------A----------DVMSIE 1780
Query: 182 DADFVDVIHTDGGILGFPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSIEHFCE 235
V+V+ G + VP G + PG + + ++++ E
Sbjct: 1781 SL--VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG-RVAASFSQEALQYVVE 1831
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 40.0 bits (93), Expect = 3e-04
Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 21/161 (13%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVD-----WSGLSAFPWYTNAATNTHI 109
++ G + ++ + D I+ +D +S +S
Sbjct: 43 CFVFLSGAGFFSTADNFANIIDKLPD--SIGILTIDAPNSGYSPVSNQANVG-------- 92
Query: 110 VGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA-GFTGKALGTVDKLPRITGLDPAFPL 168
+ ++ A + + + S+G A ++ GL+P +
Sbjct: 93 LRDWVNAILMIFEHFK--FQSYLLCVHSIGGFAALQIMNQSSKACLGF---IGLEPTTVM 147
Query: 169 YGFTGGEGHLSKEDADFVDVIHTDGGILGFPVPIGHADFFP 209
G L + A + T L + + + F
Sbjct: 148 IYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSS 188
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 35.8 bits (83), Expect = 0.009
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 54 TTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVG 111
TV +HG A G + + L + +IL+D G S +
Sbjct: 37 ETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV-----NSGSRSD 91
Query: 112 HFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA-GFTGKALGTVDKL 156
+ + K+H++G S+G + FT K V KL
Sbjct: 92 LNARILKSVVDQLD--IAKIHLLGNSMGGHSSVAFTLKWPERVGKL 135
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 35.3 bits (81), Expect = 0.009
Identities = 27/173 (15%), Positives = 45/173 (26%), Gaps = 17/173 (9%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWS--GLSAFPWYTNAATNTHIVGH 112
+V +HG + + G + + +D G S
Sbjct: 34 SVLLLHGIRFSSETWQNLGTLHRLAQAG-YRAVAIDLPGLGHSKEAAAPAPIGELAPG-S 91
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFT 172
F+AA + L+ L VI SL + +LP + P
Sbjct: 92 FLAAVVDALE-----LGPPVVISPSLSGMYS--LPFLTAPGSQLPGFVPVAPI----CTD 140
Query: 173 GGEGHLSKEDADFVDVIHTDGGILGFPVPIGHADFFPNGGFPVQPGC-HIRQL 224
+++ D +G H PN + G H L
Sbjct: 141 KINAANYASVKTPALIVYGDQDPMG-QTSFEHLKQLPNHRVLIMKGAGHPCYL 192
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.012
Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 80/224 (35%)
Query: 1 MTMYWGKCSYCCPINEPDDIT------FLLFTRANSHT---PDILRAGHEMDLKMSHMNR 51
+++ W ++ + L+ + T P I ++LK+ N
Sbjct: 392 LSLIWFDVIK----SDVMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELKVKLENE 442
Query: 52 QMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFP----WYTNAATNT 107
+H ++ D Y F D L +Y+
Sbjct: 443 Y-----ALH-----------RSIVDHYNIPKTF-----DSDDLIPPYLDQYFYS------ 475
Query: 108 HIVGHFIAA--------F------IRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTV 153
HI H F RFL+ K + S +G L +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--------IRHDSTAWNASGSILNTLQQL 527
Query: 154 DK-LPRITGLDPAFP-----LYGF-TGGEGHLSKEDADFVDVIH 190
P I DP + + F E +L + + D++
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLIC--SKYTDLLR 569
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 34.2 bits (77), Expect = 0.030
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 56 VFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHF-- 113
+ I YL R FN+ +D+ P+ + + +
Sbjct: 66 LVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWST 125
Query: 114 ----IAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
I + F++ ++++ G S G A
Sbjct: 126 WISDIKEVVSFIKRD-SGQERIYLAGESFGGIAA 158
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 33.5 bits (77), Expect = 0.037
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 10/106 (9%)
Query: 54 TTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVG 111
TV +HG A G S + +IL D S +
Sbjct: 34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV-----VMDEQRGL 88
Query: 112 HFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA-GFTGKALGTVDKL 156
A + + + + H++G ++G A F + + KL
Sbjct: 89 VNARAVKGLMDALD--IDRAHLVGNAMGGATALNFALEYPDRIGKL 132
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 33.5 bits (77), Expect = 0.039
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 8/96 (8%)
Query: 50 NRQMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNT 107
+ +HG + A +I D G S A T
Sbjct: 51 QPHALPLIVLHGGP--GMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWT 108
Query: 108 HIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
F+ F + G + + HV+G S G +
Sbjct: 109 --PQLFVDEFHAVCTALG--IERYHVLGQSWGGMLG 140
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 32.7 bits (75), Expect = 0.076
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVGH 112
TV +HG A + + A L R F+++ VD G S A + +
Sbjct: 38 TVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGYGHSDKR-----AEHGQFNRY 91
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
A G L ++ ++G +LG A
Sbjct: 92 AAMALKGLFDQLG--LGRVPLVGNALGGGTA 120
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 32.1 bits (72), Expect = 0.10
Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 21/128 (16%)
Query: 50 NRQMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILV-------------DWSGLSA 96
+ T ++HG+ + S T + L + N ++ S +A
Sbjct: 3 AIKTTATLFLHGYG--GSERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAA 60
Query: 97 FPWY-----TNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALG 151
P N N ++I + L+S+ F + + + +G S+G F K G
Sbjct: 61 NPIVKVEFKDNKNGNFKENAYWIKEVLSQLKSQ-FGIQQFNFVGHSMGNMSFAFYMKNYG 119
Query: 152 TVDKLPRI 159
LP++
Sbjct: 120 DDRHLPQL 127
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 32.3 bits (73), Expect = 0.12
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFI 114
T+ GF + + + G F++ D + + +
Sbjct: 37 TILIASGFAR--RMDHFAGLAEYLSTNG-FHVFRYDSLHHVGLSSGSIDEFTMTTGKNSL 93
Query: 115 AAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+LQ+KG + +I SL A +A
Sbjct: 94 CTVYHWLQTKGTQ--NIGLIAASLSARVA 120
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 31.9 bits (73), Expect = 0.13
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 54 TTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVG 111
+ H ++E ++G T + + +++ LV+ G S + + T +
Sbjct: 24 PPLCVTHLYSE--YNDNGNTFANPFTDH--YSVYLVNLKGCGNSDSAKNDSEYSMTETI- 78
Query: 112 HFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ A L ++K G S G +A
Sbjct: 79 KDLEAIREALY-----INKWGFAGHSAGGMLA 105
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 31.7 bits (72), Expect = 0.15
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 24/99 (24%)
Query: 54 TTVFYIHGFTEQANGESGTTVKD--AYLRRGDFNIILVDWSG-------LSAFPWYTNAA 104
V +HGFT + V+ +L + + G L
Sbjct: 17 RAVLLLHGFTG-----NSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQ 71
Query: 105 TNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ FL++KG+ K+ V G SLG +
Sbjct: 72 D--------VMNGYEFLKNKGYE--KIAVAGLSLGGVFS 100
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 31.4 bits (71), Expect = 0.21
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 21/98 (21%)
Query: 54 TTVFYIHGFTEQANGESGTTVKD--AYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVG 111
T V +H +T S + L+R + + + +SG T + G
Sbjct: 23 TGVVLLHAYT-----GSPNDMNFMARALQRSGYGVYVPLFSG-----HGTVEPLDILTKG 72
Query: 112 HF------IAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ +A + + +K K+ V G SLG A
Sbjct: 73 NPDIWWAESSAAVAHMTAKY---AKVFVFGLSLGGIFA 107
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 31.1 bits (71), Expect = 0.25
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 23/123 (18%)
Query: 55 TVFYIHGFTEQANGESGTTVKD--AYLRRGDFNIILVDWS--GLSAFPWYTNAATNTHIV 110
T+ ++HG G + + YL D+N IL+D G S +
Sbjct: 18 TLLFVHGS-----GCNLKIFGELEKYLE--DYNCILLDLKGHGESKGQCPSTVYGYID-- 68
Query: 111 GHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA-GFTGKALGTVDKL------PRITGLD 163
+A FI + + +IG+S+G I G K L V K+ R LD
Sbjct: 69 --NVANFITNSEVT-KHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARFDKLD 125
Query: 164 PAF 166
F
Sbjct: 126 KDF 128
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 30.5 bits (69), Expect = 0.44
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 54 TTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVG 111
T + ++HG + + +S + G + I +D G S + T+ +++
Sbjct: 22 TPIIFLHGLS--LDKQSTCLFFEPLSNVGQYQRIYLDLPGMGNSDPISPS---TSDNVLE 76
Query: 112 HFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
I A + + + G S G +A
Sbjct: 77 TLIEAIEEIIG-----ARRFILYGHSYGGYLA 103
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 30.1 bits (67), Expect = 0.55
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNT----- 107
+ +HG + E + Y RG F ++ D G P ++ +
Sbjct: 26 LLLALHGLQG--SKEHILALLPGYAERG-FLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 108 HIVGHFIAAFIRFLQSKGF-PLHKMHVIGFSLGAEIA 143
+ F R + + + G SLGA +A
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVA 119
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 29.9 bits (68), Expect = 0.56
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 83 DFNIILVDW--SGLSAFPWYTNAATNTHIVGHF---IAAFIRFLQSKGFPLHKMHVIGFS 137
D +IL D+ SG S Y T + + + L L + +G S
Sbjct: 46 DHRVILFDYVGSGHSDLRAYDLNRYQT--LDGYAQDVLDVCEALD-----LKETVFVGHS 98
Query: 138 LGAEIA 143
+GA I
Sbjct: 99 VGALIG 104
>1zx3_A Hypothetical protein NE0241; structural genomics, PSI, prote
structure initiative, midwest center for structural
genomic unknown function; 2.50A {Nitrosomonas europaea}
SCOP: a.43.1.6
Length = 122
Score = 29.0 bits (64), Expect = 0.63
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 33 PDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW 91
PD +R M+ N ++ + + + + E+G + D + +FNI+L DW
Sbjct: 36 PDPMRKNWIME------NMDSGVIYLLESWLKAKSQETGKEISDIFANAVEFNIVLKDW 88
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 29.8 bits (67), Expect = 0.64
Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVGH 112
++ HG++ + + + Y + G +N+ D+ G SA + H
Sbjct: 29 SIALFHGYSFTSMDWDKADLFNNYSKIG-YNVYAPDYPGFGRSASSEKYGIDRGD--LKH 85
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+L++ G + + ++G S+G +
Sbjct: 86 AAEFIRDYLKANG--VARSVIMGASMGGGMV 114
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 29.8 bits (67), Expect = 0.72
Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 31/160 (19%)
Query: 56 VFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSG----------LSAFPWYTNAAT 105
V +HGFT S + +AY + G + + L G + W +
Sbjct: 43 VLLVHGFTG--TPHSMRPLAEAYAKAG-YTVCLPRLKGHGTHYEDMERTTFHDWVASV-- 97
Query: 106 NTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKL----PRITG 161
+L+ + + V G S+G + + + + + +
Sbjct: 98 ---------EEGYGWLKQRC---QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDI 145
Query: 162 LDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGILGFPVP 201
A + G +L +D + + P
Sbjct: 146 PAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTA 185
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 29.6 bits (67), Expect = 0.73
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWS--GLSAFPWYTNAATNTHIVGH 112
V +HG +G V L R + +D G + N A
Sbjct: 18 LVVLVHGLL--GSGADWQPVLSH-LARTQCAALTLDLPGHGTNPERHCDNFA-------E 67
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ + +Q+ + ++G+SLG +
Sbjct: 68 AVEMIEQTVQAHVTSEVPVILVGYSLGGRLI 98
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 29.3 bits (66), Expect = 0.81
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 56 VFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIA 115
V +HG +YL ++ + N ++ F+
Sbjct: 6 VVMVHGIG---GASFNFAGIKSYLVSQGWSRDKLYAVDFW--DKTGTNYNNGPVLSRFVQ 60
Query: 116 AFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAF 166
+ K+ ++ S+G + K L +K+ + L A
Sbjct: 61 KVLDE-----TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGAN 106
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 29.5 bits (67), Expect = 0.89
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 83 DFNIILVDW--SGLSAFPWYTNAATNTHIVGHF---IAAFIRFLQSKGFPLHKMHVIGFS 137
F +I+ D+ SG S ++ ++ + + + + L L + +IG S
Sbjct: 54 QFTVIVFDYVGSGQSDLESFSTKRYSS--LEGYAKDVEEILVALD-----LVNVSIIGHS 106
Query: 138 LGAEIA 143
+ + IA
Sbjct: 107 VSSIIA 112
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 29.0 bits (65), Expect = 1.1
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 40 HEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKD--AYLRRGDFNIILVDWSG--LS 95
+D+ N + T+ +HG T + L + +I VD G S
Sbjct: 35 AYLDVAPKKANGR--TILLMHGK-----NFCAGTWERTIDVLADAGYRVIAVDQVGFCKS 87
Query: 96 AFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ P + + A + L + + VIG S+G +A
Sbjct: 88 SKPAHYQYSFQQLA--ANTHALLERLG-----VARASVIGHSMGGMLA 128
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/91 (12%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVGH 112
+ ++HGF ++ + + + ++++I +D G + N +
Sbjct: 18 VLVFLHGFL--SDSRTYHNHIEKF--TDNYHVITIDLPGHGEDQSS--MDETWNFDYITT 71
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ + + + + G+S+G +A
Sbjct: 72 LLDRILDKYK-----DKSITLFGYSMGGRVA 97
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 28.9 bits (65), Expect = 1.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 114 IAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTG 147
+ A I ++KG ++ + GFS G + T
Sbjct: 101 VIALIDEQRAKGIAAERIILAGFSQGGAVVLHTA 134
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 28.2 bits (63), Expect = 2.0
Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 13/155 (8%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGL--SAFPWYTNAATNTHIVGH 112
HGFT N + ++ + D++G S + N +
Sbjct: 48 MAIIFHGFTANRNTSLLREIANSLRDEN-IASVRFDFNGHGDSDGKFENMTVLNEIEDAN 106
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFT 172
I +++ + ++++G + G +A D + ++ L PA L
Sbjct: 107 AILNYVK----TDPHVRNIYLVGHAQGGVVASMLAGLYP--DLIKKVVLLAPAATLK--- 157
Query: 173 GGEGHLSKEDADFVDVIHTDGGILGFPVPIGHADF 207
G+ + H + + +G
Sbjct: 158 -GDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYL 191
>1odz_A Mannanase A; hydrolase, family 26, glycoside-hydrolase,
glycosynthase, manno-oligosaccharide; HET: MAN BMA; 1.4A
{Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1r7o_A*
2whm_A* 1j9y_A 1gvy_A* 1gw1_A*
Length = 386
Score = 28.3 bits (62), Expect = 2.2
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 89 VDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAG---- 144
VD G + + A V A R +++G + + E
Sbjct: 240 VDVLGFDTYGPVADNADWFRNVVANAALVARMAEARGKIPVISGIGIRAPDIEAGLYDNQ 299
Query: 145 FTGKALGTVDKLPRITGL 162
+ K + + P +
Sbjct: 300 WYRKLISGLKADPDAREI 317
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 28.5 bits (63), Expect = 2.4
Identities = 24/144 (16%), Positives = 35/144 (24%), Gaps = 24/144 (16%)
Query: 90 DWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSK--GFPLHKMHVI-------GFSLGA 140
WS N + + A L P + I G G
Sbjct: 46 HWSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGF 105
Query: 141 EIAGFTGKALGTV--DKLPRIT-----GLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDG 193
E G + + T +K T DPA + + + + +
Sbjct: 106 ESIGG--QCVFTSEWNKHAVRTYKANHYCDPATHHF-----NEDIRDITLSHQEGVSDEA 158
Query: 194 GILGFPVPIGHADFFPNGGFPVQP 217
I D GFP QP
Sbjct: 159 AAEHIRQHIPEHDVL-LAGFPCQP 181
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 28.1 bits (63), Expect = 2.6
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVGH 112
V IHG + + + L + + +I D G + P +
Sbjct: 27 PVILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRP-----ENYNYSKDS 80
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA-GFTGKALGTVDKL 156
++ I + + + K H++G + G +A + VD++
Sbjct: 81 WVDHIIGIMDALE--IEKAHIVGNAFGGGLAIATALRYSERVDRM 123
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 27.7 bits (62), Expect = 2.9
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 55 TVFYIHGFTEQANGESG-TTVKDAYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVG 111
V +HG A+ S + L F ++ D G S +P T VG
Sbjct: 31 AVVLLHGAGPGAHAASNWRPIIPD-LAEN-FFVVAPDLIGFGQSEYP-ETYPGHIMSWVG 87
Query: 112 HFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ + + G + K H++G S+G +
Sbjct: 88 MRVEQILGLMNHFG--IEKSHIVGNSMGGAVT 117
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA
synthesis, NUCL binding, magnesium; HET: DNA DOC TTD
DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A*
3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A*
1jih_A*
Length = 520
Score = 27.9 bits (61), Expect = 3.2
Identities = 17/78 (21%), Positives = 23/78 (29%)
Query: 120 FLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLS 179
FL F + +G LG E+ K R T D A L F + S
Sbjct: 301 FLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQS 360
Query: 180 KEDADFVDVIHTDGGILG 197
D ++ L
Sbjct: 361 DYDRSTSNIDPLKTADLA 378
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 27.7 bits (61), Expect = 3.6
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 56 VFYIHGFTEQANGESGTTV---------KDAYLRRGDFNIILVDWSGLSAFPWYTNAATN 106
V ++HG E+ + Y ++ S++ N
Sbjct: 177 VVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDREN 236
Query: 107 THIVG---HFIAAFIRFLQSK-GFPLHKMHVIGFSLGA 140
+ IR L + +++++ G S+G
Sbjct: 237 PFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGG 274
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 27.4 bits (61), Expect = 3.9
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 113 FIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTG 147
+ I + G ++ + GFS G + T
Sbjct: 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTA 124
>1h0b_A Cellulase; endoglucanase, hydrolase; HET: EPE; 1.8A {Rhodothermus
marinus} SCOP: b.29.1.11
Length = 256
Score = 27.3 bits (60), Expect = 4.0
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 114 IAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDK 155
+ AFI ++G+ + ++ G E+ + G A
Sbjct: 180 LKAFIDDAVARGYIRPEWYLHAVETGFEL--WEGGAGLRSAD 219
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside
hydrolase, thermostability, PH optimum, CLAN GH-A,
thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia
heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Length = 332
Score = 27.3 bits (60), Expect = 4.4
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 66 ANGESGTTVK---DAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHI 109
NG T L++G + D G+S +P+Y+++AT + +
Sbjct: 180 DNGWDWGTQNWWYTNVLKQGTLELSDFDMMGVSFYPFYSSSATLSAL 226
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 26.8 bits (59), Expect = 5.3
Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 23/156 (14%)
Query: 33 PDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQ--------------ANGESGTTVKDAY 78
P ++L + MT Y H +
Sbjct: 26 PAEKAVRKPLNLLPFRKDTPMTKDSYFHKSRAGVAGAPLFVLLHGTGGDENQFFDFGARL 85
Query: 79 LRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHF------IAAFIRFLQSKGFPLHKMH 132
L + + D S A ++ + + +A FI+ + + + +
Sbjct: 86 LPQATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANR-EHYQAGPVI 144
Query: 133 VIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPL 168
+GFS GA I + + P P
Sbjct: 145 GLGFSNGANILANVLIEQP--ELFDAAVLMHPLIPF 178
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme;
HET: AAL GAL; 1.90A {Zobellia galactanivorans}
Length = 308
Score = 26.7 bits (58), Expect = 6.5
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 54 TTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTN 102
VF F + ++G+ +D + +F+ V W +Y +
Sbjct: 168 HHVFIRDPFQDYQPKDAGSWFEDGTVWNKEFHRFGVYWRDPWHLEYYID 216
>2bw8_A Endoglucanase; hydrolase, cellulase, glycoside hydrolase family 12;
1.54A {Rhodothermus marinus} SCOP: b.29.1.11 PDB:
2bwa_A* 2bwc_A* 3b7m_A
Length = 227
Score = 26.5 bits (58), Expect = 6.9
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 114 IAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDK 155
+ AFI ++G+ + ++ G E+ + G A
Sbjct: 180 LKAFIDDAVARGYIRPEWYLHAVETGFEL--WEGGAGLRSAD 219
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 26.7 bits (58), Expect = 7.0
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 158 RITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGILGFPV 200
+ G DP+ P + D F D++ GF +
Sbjct: 24 LVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLL 66
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions,
carbohydrate-binding modul trefoil fold, CBM42, sugar
binding protein; 1.80A {Clostridium thermocellum}
Length = 157
Score = 26.1 bits (57), Expect = 7.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 78 YLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFS 137
YLR ++++ L G S F +AT + G ++I F QS FP + +
Sbjct: 69 YLRHSNYDLSLEKNDGTSLFA---ESATFKIVPGLADPSYISF-QSYNFPTRYIRHYNYL 124
Query: 138 LGAE 141
L +
Sbjct: 125 LRLD 128
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 26.4 bits (58), Expect = 7.6
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 114 IAAFIRFLQSK-GFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPL 168
AAF + G L +G+S GA + + L P L
Sbjct: 95 FAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHP--GIVRLAALLRPMPVL 148
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation,
cleavage of beta-1, 4-D-galactose linkages; HET: EPE;
2.30A {Zobellia galactanivorans} SCOP: b.29.1.2
Length = 346
Score = 26.7 bits (58), Expect = 7.6
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 54 TTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTN 102
VF F + ++G+ +D + +F+ V W +Y +
Sbjct: 199 HHVFIRDPFQDYQPKDAGSWFEDGTVWNKEFHRFGVYWRDPWHLEYYID 247
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 26.6 bits (59), Expect = 7.7
Identities = 5/54 (9%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 137 SLGAEIAGFTGKALGTVDKLPRIT-GLDPAFPLYGFTGGEGHLSKEDADFVDVI 189
SL ++ + + P + + F + + A + ++
Sbjct: 12 SLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLL 65
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 26.6 bits (59), Expect = 8.3
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 83 DFNIILVDW--SGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGA 140
+ +I +D G +A P + I F+++ F K+ ++G S+G
Sbjct: 65 HYRVIAMDMLGFGKTAKP------DIEYTQDRRIRHLHDFIKAMNFD-GKVSIVGNSMGG 117
Query: 141 EIA-GFTGKALGTVDKL 156
G + V+ L
Sbjct: 118 ATGLGVSVLHSELVNAL 134
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D
structure, serine esterase, HYD aromatic hydrocarbons,
catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A*
1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A
1ggv_A*
Length = 236
Score = 26.1 bits (58), Expect = 8.4
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 114 IAAFIRFLQSKGFPLHKMHVIGFSLGAEIA-------------GFTGKALGT-VDKLPRI 159
+ A IR+ + + + K+ ++G+SLG +A G+ G L ++K+P +
Sbjct: 100 LEAAIRYARHQPYSNGKVGLVGYSLGGALAFLVASKGYVDRAVGYYGVGLEKQLNKVPEV 159
Query: 160 TGLDPAFPLYGFTGGE-GHLSKEDADFV 186
P GG+ + +
Sbjct: 160 KH-----PALFHMGGQDHFVPAPSRQLI 182
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 26.5 bits (59), Expect = 8.8
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 77 AYLRRGDFNIILVDW--SGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVI 134
L + F ++ D G S P A ++ L+ K+ ++
Sbjct: 45 KNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKALK-----FKKVSLL 99
Query: 135 GFSLGAEIA 143
G+S G A
Sbjct: 100 GWSDGGITA 108
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich,
structural genomics, PSI-2, prote structure initiative;
1.74A {Klebsiella pneumoniae subsp}
Length = 241
Score = 26.1 bits (58), Expect = 9.1
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 18/120 (15%)
Query: 114 IAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTG 173
+ + G H++ + GF G I L A YG
Sbjct: 100 LDHVASWAARHGGDAHRLLITGFCWGGRITWLYA---------AHNPQLKAAVAWYGKLV 150
Query: 174 GEGHLSKEDADFVDVIHTDGGILGFPVPIGHAD-FFPNGGFPVQPGCHIRQLLRKNSIEH 232
GE L+ + + +LG G D P +RQ LR +
Sbjct: 151 GEKSLNSPKHPVDIAVDLNAPVLGL---YGAKDASIPQDTVET-----MRQALRAANATA 202
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA
polymerase subunit; 1.9A {Saccharomyces cerevisiae}
SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E
1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E*
1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E
1y1v_E 1y1w_E 1y1y_E ...
Length = 215
Score = 26.2 bits (57), Expect = 9.9
Identities = 17/142 (11%), Positives = 37/142 (26%), Gaps = 3/142 (2%)
Query: 34 DILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSG 93
++ + M +++ ++ T + I V +
Sbjct: 56 KMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNN 115
Query: 94 LSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTV 153
++ + + F A + + + K + E +
Sbjct: 116 ITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSD---EKRELLKRYRLKE 172
Query: 154 DKLPRITGLDPAFPLYGFTGGE 175
+LPRI DP G GE
Sbjct: 173 SQLPRIQRADPVALYLGLKRGE 194
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.466
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,933,894
Number of extensions: 246634
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 74
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.8 bits)