RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4317
(235 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 189 bits (481), Expect = 8e-60
Identities = 79/228 (34%), Positives = 103/228 (45%), Gaps = 13/228 (5%)
Query: 17 PDDI--TFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTV 74
P+DI FLL+T N + + A +K S+ T F +HGF ++ +
Sbjct: 32 PEDIDTRFLLYTNENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDM 91
Query: 75 KDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRF-LQSKGFPLHKMHV 133
+ N I VDW S YT A+ NT +VG IA ++ G+ +H+
Sbjct: 92 CKKMFQVEKVNCICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHL 150
Query: 134 IGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDG 193
IG SLGA + G G+ L + RITGLDPA P + E L DA FVDVIHTD
Sbjct: 151 IGHSLGAHVVGEAGRRLEG--HVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDS 208
Query: 194 GIL------GFPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSIEHFCE 235
+ G +GH DFFPNGG PGC L I E
Sbjct: 209 APIIPYLGFGMSQKVGHLDFFPNGGKE-MPGCQKNILSTIVDINGIWE 255
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 184 bits (469), Expect = 6e-58
Identities = 76/228 (33%), Positives = 100/228 (43%), Gaps = 14/228 (6%)
Query: 17 PDDI--TFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTV 74
P+ I FLL+T N + L + S+ T F IHGF ++ +
Sbjct: 32 PERIGTRFLLYTNKNPNNFQTLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEENWLLDM 91
Query: 75 KDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRF-LQSKGFPLHKMHV 133
+ + N I VDW S YT AA N +VG +A + + + ++ +
Sbjct: 92 CKNMFKVEEVNCICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQL 150
Query: 134 IGFSLGAEIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDG 193
IG SLGA +AG G L RITGLDP + T E L DADFVDVIHTD
Sbjct: 151 IGHSLGAHVAGEAGSRTP---GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDA 207
Query: 194 GIL------GFPVPIGHADFFPNGGFPVQPGCHIRQLLRKNSIEHFCE 235
L G +GH DFFPNGG PGC L + ++ E
Sbjct: 208 APLIPFLGFGTSQQMGHLDFFPNGGEE-MPGCKKNALSQIVDLDGIWE 254
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 33.0 bits (74), Expect = 0.022
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 55 TVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFI 114
T+ GF + + +G YL F++ D + + +
Sbjct: 34 TILIASGFARRMDHFAGLA---EYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSL 90
Query: 115 AAFIRFLQSKGFPLHKMHVIGFSLGAEIA 143
+ + + +I SL A +A
Sbjct: 91 CTVYHW--LQTKGTQNIGLIAASLSARVA 117
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241
{Nitrosomonas europaea [TaxId: 915]}
Length = 86
Score = 30.9 bits (69), Expect = 0.028
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 33 PDILRAGHEMDLKMSHMNRQMTTVFYIHGFTEQANGESGTTVKDAYLRRGDFNIILVDW 91
PD +R M+ N ++ + + + + E+G + D + +FNI+L DW
Sbjct: 5 PDPMRKNWIME------NMDSGVIYLLESWLKAKSQETGKEISDIFANAVEFNIVLKDW 57
>d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp.
pisi [TaxId: 169388]}
Length = 197
Score = 28.0 bits (62), Expect = 0.80
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 55 TVFYIHGFTEQAN-GESGTTVKDA---YLRRGDFNIILVDWSGLSAFPWYTNAATNTHIV 110
Y G TE N G G ++ + I V + + +
Sbjct: 19 IFIYARGSTETGNLGTLGPSIASNLESAFGKDGVWIQGVGGAYRATLGDNALPRGTSSAA 78
Query: 111 GHFIAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTV 153
+ + +K P + G+S GA +A + + L +
Sbjct: 79 IREMLGLFQQANTK-CPDATLIAGGYSQGAALAAASIEDLDSA 120
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga
maritima [TaxId: 2336]}
Length = 319
Score = 27.6 bits (60), Expect = 1.2
Identities = 15/159 (9%), Positives = 41/159 (25%), Gaps = 7/159 (4%)
Query: 3 MYWGKCSYCCPINEPDDITFLLFTRANSHTPDILRAGHEMDLKMSHMNRQMTTVFYIHGF 62
+ + L P++++ + T Y+
Sbjct: 156 LVRLARERGVFVFVEQTPRLLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLA 215
Query: 63 TEQANGESGTTVKDAYLRRGDFNIILVDWSG-LSAFPWYTNAATNTHIVG-HFIAAFIRF 120
+ A + + + N I+ G ++ G ++A + +
Sbjct: 216 EKLAE-----KSQVSVVSYEVKNDIVATREGVWLIRSKEEIDTSHLLGAGDAYVAGMVYY 270
Query: 121 LQSKGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRI 159
G +M GF+ K + ++ + +
Sbjct: 271 FIKHGANFLEMAKFGFASALAATRRKEKYMPDLEAIKKE 309
>d2nlra_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
(cellulase) catalytic domain {Streptomyces lividans,
CelB2 [TaxId: 1916]}
Length = 222
Score = 27.1 bits (60), Expect = 1.4
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 71 GTTVKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHK 130
G+ V A + + + + +A + + F+R ++G +
Sbjct: 135 GSPVGTASVGGRTWEVWSGGNGSNDVLSFVAPSAISGWSFD--VMDFVRATVARGLAEND 192
Query: 131 MHVIGFSLGAEIAGFTGKALGTVDK 155
++ G E + A V+
Sbjct: 193 WYLTSVQAGFEP--WQNGAGLAVNS 215
>d1g66a_ c.69.1.30 (A:) Acetylxylan esterase {Penicillium
purpurogenum [TaxId: 28575]}
Length = 207
Score = 26.6 bits (58), Expect = 2.3
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 4/112 (3%)
Query: 55 TVFYIHGFTEQAN-GESGTTVKDAYLRRGDFNIILVDWSGLSAFPWYTNAATNTHIVGHF 113
VF T G S T V +++ A+ + V
Sbjct: 6 HVFGARETTASPGYGSSSTVVNGVLSAYPGSTAEAINYPA-CGGQSSCGGASYSSSVAQG 64
Query: 114 IAAFIRFLQS--KGFPLHKMHVIGFSLGAEIAGFTGKALGTVDKLPRITGLD 163
IAA + S P K+ ++G+S G EI G ++ T +
Sbjct: 65 IAAVASAVNSFNSQCPSTKIVLVGYSQGGEIMDVALCGGGDPNQGYTNTAVQ 116
>d1kwma2 d.58.3.1 (A:1A-95A) Procarboxypeptidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 95
Score = 24.8 bits (54), Expect = 4.4
Identities = 3/42 (7%), Positives = 9/42 (21%)
Query: 91 WSGLSAFPWYTNAATNTHIVGHFIAAFIRFLQSKGFPLHKMH 132
W S ++ + + L+ +
Sbjct: 38 WKPDSVTQIKPHSTVDFRVKAEDTVTVENVLKQNELQYKVLI 79
>d2bw8a1 b.29.1.11 (A:2-227) Family 12 endo-1,4-beta-glucanase
(cellulase) catalytic domain {Rhodothermus marinus
[TaxId: 29549]}
Length = 226
Score = 25.2 bits (55), Expect = 6.9
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 100 YTNAATNTHIVGHF-IAAFIRFLQSKGFPLHKMHVIGFSLGAEIAGFTGKA 149
T T V + AFI ++G+ + ++ G E+ + G A
Sbjct: 164 AYRRTTPTTSVSELDLKAFIDDAVARGYIRPEWYLHAVETGFEL--WEGGA 212
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 65
Score = 23.4 bits (50), Expect = 7.6
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 3 MYWGKCSYCCP---INEPDD 19
MY G C CP + +P++
Sbjct: 46 MYCGNCYTMCPGMPLFDPEN 65
>d1mg7a2 d.58.26.6 (A:188-380) Early switch protein XOL-1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 193
Score = 24.9 bits (54), Expect = 7.7
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 23 LLFTRANSHTPD----ILRAGHEMDLKMSHMNRQMTTVFY 58
L+F + + H D + + + L N + +
Sbjct: 28 LVFVKTDLHPEDFTPQMFPSQAKAKLLRDAFNNEEDEDTF 67
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 24.6 bits (53), Expect = 9.8
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 141 EIAGFTGKALGTVDKLPRITGLDPAFPLYGFTGGEGHLSKEDADFVDVIHTDGGILGF 198
E+ G K G + G DP+ P + D F D++ GF
Sbjct: 8 ELTGAARKGSG----RRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGF 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.143 0.466
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 973,849
Number of extensions: 46264
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 24
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)