BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4323
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PY2|A Chain A, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|B Chain B, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|C Chain C, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|D Chain D, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|E Chain E, Structure Of Herring Type Ii Antifreeze Protein
 pdb|2PY2|F Chain F, Structure Of Herring Type Ii Antifreeze Protein
          Length = 136

 Score = 34.7 bits (78), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 38/131 (29%)

Query: 55  LEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCNFNGCDRPDL 114
           L++ W DA+  C +   +  S+ + +E+ FVK+ +T  ++   W  G  C  +       
Sbjct: 21  LQLHWADAQESCMKEGANLASIHSLEESTFVKE-LTSADLIPSWIGGTDCQVS------- 72

Query: 115 QPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREA------------AQHD 162
                  WFW  S       T  +  DW A      AQPD                  +D
Sbjct: 73  -----TRWFWMDS-------TSMDYADWCA------AQPDTTLTECCIQMNVGIGKCWND 114

Query: 163 VACHHLKPFVC 173
             C HL   +C
Sbjct: 115 TPCTHLHSSIC 125


>pdb|1TDQ|B Chain B, Structural Basis For The Interactions Between Tenascins
           And The C-Type Lectin Domains From Lecticans: Evidence
           For A Cross-Linking Role For Tenascins
          Length = 130

 Score = 30.8 bits (68), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 42/138 (30%)

Query: 49  HAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQ------------RITRGNVRY 96
           H P R     W+DA   CR       S+ TP+E EFV +            R   G+ R 
Sbjct: 21  HFPDRET---WVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQWIGLNDRTIEGDFR- 76

Query: 97  IWTSGRKCNFNGCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNR 156
            W+ G    F    RP+ QP N    F +G    +    +R  G+W+             
Sbjct: 77  -WSDGHSLQFEKW-RPN-QPDNF---FATGEDCVVMIWHER--GEWN------------- 115

Query: 157 EAAQHDVACHHLKPFVCE 174
                DV C++  PF C+
Sbjct: 116 -----DVPCNYQLPFTCK 128


>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
          Length = 164

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 43/134 (32%)

Query: 57  VDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCNFNGCDRPDLQP 116
           ++W  AR  CR +  D V+++   E E++++ +      Y W   RK             
Sbjct: 10  MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTLPFSR-SYYWIGIRK------------- 55

Query: 117 ANVNG-WFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREAAQ--------------- 160
             + G W W G+   +    +           +G  +P+N++  +               
Sbjct: 56  --IGGIWTWVGTNKSLTEEAE----------NWGDGEPNNKKNKEDCVEIYIKRNKDAGK 103

Query: 161 -HDVACHHLKPFVC 173
            +D ACH LK  +C
Sbjct: 104 WNDDACHKLKAALC 117


>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
          Length = 276

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 52  TRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCNFN 107
           T +  +DW D +NI +++ +     +  +E + V+Q + R +  + +TS +  N N
Sbjct: 161 TEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSN 216


>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly
           Protein (Nap)
          Length = 359

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 52  TRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCNFN 107
           T +  +DW D +NI +++ +     +  +E + V+Q + R +  + +TS +  N N
Sbjct: 195 TEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSN 250


>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
           Plasmodium Falciparum
 pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
           Plasmodium Falciparum At 2.4 A Resolution
          Length = 249

 Score = 27.3 bits (59), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 52  TRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCNFN 107
           T +  +DW D +NI +++ +     +  +E + V+Q + R +  + +TS +  N N
Sbjct: 151 TEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSN 206


>pdb|1UKM|A Chain A, Crystal Structure Of Ems16, An Antagonist Of Collagen
           Receptor Integrin Alpha2beta1 (GpiaIIA)
 pdb|1V7P|A Chain A, Structure Of Ems16-Alpha2-I Domain Complex
          Length = 134

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 36/132 (27%)

Query: 58  DWLDARNICRRHCMDA--VSLETPQENEFVKQRITRGNVR---YIWTSGR------KCNF 106
           +W +A   C     D   VS+++ +E  FV Q ++    R   Y+W   R      +CN 
Sbjct: 24  NWYEAERFCTEQAKDGHLVSIQSREEGNFVAQLVSGFMHRSEIYVWIGLRDRREEQQCNP 83

Query: 107 NGCDRPDLQPANVNGWFWSGSGAKI--GPTTQRNTGDWSATGGFGQAQPDNREAAQHDVA 164
              D   +   N     W    +K+  G T   N  DW+                  ++ 
Sbjct: 84  EWNDGSKIIYVN-----WKEGESKMCQGLTKWTNFHDWN------------------NIN 120

Query: 165 CHHLKPFVCEDS 176
           C  L PFVC+ S
Sbjct: 121 CEDLYPFVCKFS 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,756,236
Number of Sequences: 62578
Number of extensions: 290295
Number of successful extensions: 625
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 11
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)