BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4323
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13608|PGCA_BOVIN Aggrecan core protein OS=Bos taurus GN=ACAN PE=1 SV=3
Length = 2364
Score = 37.4 bits (85), Expect = 0.053, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 42/140 (30%)
Query: 47 WEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQ------------RITRGNV 94
+ H P R+ W+DA + CR+ S+ TP+E EFV + G+
Sbjct: 2166 YRHFPDRA---TWVDAESQCRKQQSHLSSIVTPEEQEFVNNNAQDYQWIGLNDKTIEGDF 2222
Query: 95 RYIWTSGRKCNFNGCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPD 154
R W+ G F RP+ QP N +F +G + G+W+
Sbjct: 2223 R--WSDGHSLQFENW-RPN-QPDN---FFATGEDCVV--MIWHEKGEWN----------- 2262
Query: 155 NREAAQHDVACHHLKPFVCE 174
DV C++ PF C+
Sbjct: 2263 -------DVPCNYQLPFTCK 2275
>sp|P16112|PGCA_HUMAN Aggrecan core protein OS=Homo sapiens GN=ACAN PE=1 SV=2
Length = 2415
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 42/140 (30%)
Query: 47 WEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQ------------RITRGNV 94
+ H P R W+DA CR S+ TP+E EFV R G+
Sbjct: 2217 YRHFPDRE---TWVDAERRCREQQSHLSSIVTPEEQEFVNNNAQDYQWIGLNDRTIEGDF 2273
Query: 95 RYIWTSGRKCNFNGCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPD 154
R W+ G F RP+ QP N +F +G + G+W
Sbjct: 2274 R--WSDGHPMQFENW-RPN-QPDN---FFAAGEDCVV--MIWHEKGEW------------ 2312
Query: 155 NREAAQHDVACHHLKPFVCE 174
+DV C++ PF C+
Sbjct: 2313 ------NDVPCNYHLPFTCK 2326
>sp|Q28343|PGCA_CANFA Aggrecan core protein OS=Canis familiaris GN=ACAN PE=2 SV=2
Length = 2333
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 39/128 (30%)
Query: 59 WLDARNICRRHCMDAVSLETPQENEFVKQ------------RITRGNVRYIWTSGRKCNF 106
W+DA + CR S+ TP+E EFV R G+ R W+ G F
Sbjct: 2144 WVDAESRCRAQQSHLSSIVTPEEQEFVNNNAQDYQWIGLNDRTIEGDFR--WSDGHSLQF 2201
Query: 107 NGCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREAAQHDVACH 166
RP+ QP N +F SG + G+W+ DV C+
Sbjct: 2202 ENW-RPN-QPDN---FFVSGEDCVV--MIWHEKGEWN------------------DVPCN 2236
Query: 167 HLKPFVCE 174
+ PF C+
Sbjct: 2237 YYLPFTCK 2244
>sp|P07898|PGCA_CHICK Aggrecan core protein OS=Gallus gallus GN=ACAN PE=1 SV=2
Length = 2109
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 39/127 (30%)
Query: 59 WLDARNICRRHCMDAVSLETPQENEFV------------KQRITRGNVRYIWTSGRKCNF 106
W+DA + CR H S+ TP+E EFV R + R W+ G F
Sbjct: 1918 WMDAESRCREHQAHLSSIITPEEQEFVNSHAQDYQWIGLSDRAVENDFR--WSDGHSLQF 1975
Query: 107 NGCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREAAQHDVACH 166
RP+ QP N +F++G + G+W +DV C+
Sbjct: 1976 ENW-RPN-QPDN---FFFAGEDCVV--MIWHEQGEW------------------NDVPCN 2010
Query: 167 HLKPFVC 173
+ PF C
Sbjct: 2011 YHLPFTC 2017
>sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana
GN=UBC23 PE=3 SV=1
Length = 1102
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 55 LEVDWLDARNICRRHCMDAVSLETPQENEFVKQR 88
++V W D CRR + + +ETP ++EFV ++
Sbjct: 458 VDVSWQDGTIECRREAITLIPIETPGDHEFVSEQ 491
>sp|A8WH75|CD302_PIG CD302 antigen OS=Sus scrofa GN=CD302 PE=2 SV=1
Length = 240
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 43 YFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITR 91
Y F E S+E D RN C H D VS+ +EN F+ + + +
Sbjct: 45 YIFLQEAIKVESIE----DVRNQCTDHGADMVSIHNEEENTFILETLKK 89
>sp|Q40762|PHY_PICAB Phytochrome OS=Picea abies PE=2 SV=1
Length = 1136
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 134 TTQRNTGDWSATGGFGQAQPDNREAAQHDVACHHLKPFV 172
TT N D + G GQ QP NR V CHH P V
Sbjct: 355 TTNENGDD---SEGGGQQQPQNRRKLWGLVVCHHTSPRV 390
>sp|P30836|LYAM1_RAT L-selectin OS=Rattus norvegicus GN=Sell PE=2 SV=1
Length = 372
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 43/141 (30%)
Query: 49 HAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCNFNG 108
H RS+ +W +AR C+ + D V+++ +E E++++ + + N Y W RK
Sbjct: 42 HYSERSM--NWENARKFCKHNYTDLVAIQNKREIEYLEKTLPK-NPTYYWIGIRKIG--- 95
Query: 109 CDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREAAQ-------- 160
W W G+ T + +W G +P+N+++ +
Sbjct: 96 -----------KTWTWVGTNK----TLTKEAENW------GTGEPNNKKSKEDCVEIYIK 134
Query: 161 --------HDVACHHLKPFVC 173
+D ACH K +C
Sbjct: 135 RERDSGKWNDDACHKRKAALC 155
>sp|Q9DG39|IXXA_GLOHA Coagulation factor IX/factor X-binding protein subunit A
OS=Gloydius halys PE=2 SV=1
Length = 152
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 32/127 (25%)
Query: 59 WLDARNICRRHCMDA--VSLETPQENEFVKQRITRGNVR---YIWTSGR------KCNFN 107
W +A CR+ A VS+E+ +E +FV Q ++ R YIW R +C+
Sbjct: 46 WAEAERFCRKQVKGAHLVSIESSEEADFVAQLVSENMKRYGIYIWIGLRVRGKKKQCSSQ 105
Query: 108 GCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREAAQHDVACHH 167
D + N W + S +G + W ++ C
Sbjct: 106 WSDGSSVSYQN---WIEAESKTCLGLQKETEFRKW------------------FNIYCGE 144
Query: 168 LKPFVCE 174
PFVCE
Sbjct: 145 RNPFVCE 151
>sp|A8WH74|CD302_BOVIN CD302 antigen OS=Bos taurus GN=CD302 PE=2 SV=1
Length = 232
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 43 YFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITR 91
Y F E S+E D RN C H D +S+ +EN F+ + +
Sbjct: 37 YIFLQEAIKVESIE----DVRNQCTNHGADMISIHNEEENAFILDTLKK 81
>sp|Q01758|ISP2_OSMMO Type-2 ice-structuring protein OS=Osmerus mordax PE=1 SV=1
Length = 175
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 38/131 (29%)
Query: 55 LEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCNFNGCDRPDL 114
L++ W A+ C + + S+ + +E FVK+ T G + W G C+ +
Sbjct: 55 LQLHWAHAQISCMKDGANLASIHSLEEYAFVKELTTAGLIPA-WIGGSDCHVS------- 106
Query: 115 QPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPD------------NREAAQHD 162
WFW S T + DW A AQPD +D
Sbjct: 107 -----TYWFWMDS-------TSMDFTDWCA------AQPDFTLTECCIQINVGVGKCWND 148
Query: 163 VACHHLKPFVC 173
C HL VC
Sbjct: 149 TPCTHLHASVC 159
>sp|P18337|LYAM1_MOUSE L-selectin OS=Mus musculus GN=Sell PE=2 SV=1
Length = 372
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 46/150 (30%)
Query: 40 THSYFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWT 99
TH + + + P ++W +AR C+++ D V+++ +E E+++ + + + Y W
Sbjct: 36 THCWTYHYSEKP-----MNWENARKFCKQNYTDLVAIQNKREIEYLENTLPK-SPYYYWI 89
Query: 100 SGRKCNFNGCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREAA 159
RK W W G+ T + +W G +P+N+++
Sbjct: 90 GIRKIG--------------KMWTWVGTNK----TLTKEAENW------GAGEPNNKKSK 125
Query: 160 Q----------------HDVACHHLKPFVC 173
+ +D ACH K +C
Sbjct: 126 EDCVEIYIKRERDSGKWNDDACHKRKAALC 155
>sp|Q9VN14|CONT_DROME Contactin OS=Drosophila melanogaster GN=Cont PE=1 SV=2
Length = 1390
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 52 TRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVR 95
RS + +W +A+ IC+ H D ++++ +++ F+ + + N R
Sbjct: 154 IRSPKRNWAEAKKICKAHNADLINVDNVEKHSFILKNLILQNQR 197
>sp|Q61282|PGCA_MOUSE Aggrecan core protein OS=Mus musculus GN=Acan PE=1 SV=2
Length = 2132
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 39/128 (30%)
Query: 59 WLDARNICRRHCMDAVSLETPQENEFVKQ------------RITRGNVRYIWTSGRKCNF 106
W+DA CR S+ TP+E EFV + R G+ R W+ G F
Sbjct: 1943 WVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQWIGLNDRTIEGDFR--WSDGHSLQF 2000
Query: 107 NGCDRPDLQPANVNGWFWSGSGAKIGPTTQRNTGDWSATGGFGQAQPDNREAAQHDVACH 166
RP+ QP N +F +G + +R G+W +DV C+
Sbjct: 2001 EKW-RPN-QPDN---FFATGEDCVVMIWHER--GEW------------------NDVPCN 2035
Query: 167 HLKPFVCE 174
+ PF C+
Sbjct: 2036 YQLPFTCK 2043
>sp|Q9C823|Y1523_ARATH C-type lectin receptor-like tyrosine-protein kinase At1g52310
OS=Arabidopsis thaliana GN=At1g52310 PE=2 SV=1
Length = 552
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 58 DWLDARNICRRHCMDAVSLETPQENEFVKQRITRGNVRYIWTSGRKCN 105
W + CR + SL + +E FV Q++ GNV W GR N
Sbjct: 72 SWEKSEMFCRTYGGHLASLASSKELSFV-QKLCNGNVSSCWIGGRSMN 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,286,813
Number of Sequences: 539616
Number of extensions: 3477567
Number of successful extensions: 5184
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5163
Number of HSP's gapped (non-prelim): 43
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)