BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4325
(306 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
Length = 375
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/243 (86%), Positives = 228/243 (93%), Gaps = 4/243 (1%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+PV + +ASIPKCGGC +LILDRFILKVLERTWHARCLKC+ECGA LA+KCFARNG+LFC
Sbjct: 34 IPVKL-LASIPKCGGCQELILDRFILKVLERTWHARCLKCNECGATLADKCFARNGMLFC 92
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
K+DFFKR+GTKCAGC++GIPPTQ+VRRAQDLVYHL CFACVMC R LNTGDEFYLMEDRK
Sbjct: 93 KDDFFKRYGTKCAGCDLGIPPTQIVRRAQDLVYHLQCFACVMCGRTLNTGDEFYLMEDRK 152
Query: 181 LVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
LVCKPDYEAAK K+G CLDGDQPNKRPRTTITAKQLETLKMAYN SPKPARHVREQLSQD
Sbjct: 153 LVCKPDYEAAKTKEGGCLDGDQPNKRPRTTITAKQLETLKMAYNNSPKPARHVREQLSQD 212
Query: 241 TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKD---ELKIDLDSNFS 297
TGLDMRVVQVWFQNRRAKEKRLKKDAGR+RWSQYFR+MKG SP++ +LK+DLDSNFS
Sbjct: 213 TGLDMRVVQVWFQNRRAKEKRLKKDAGRSRWSQYFRTMKGSISPRNDKDDLKVDLDSNFS 272
Query: 298 HSH 300
HSH
Sbjct: 273 HSH 275
>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
Length = 448
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/239 (83%), Positives = 216/239 (90%), Gaps = 8/239 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+++IPKCGGC +LILDRFILKV +RTWHA+CL+C +C L +KCFARNG LFCKEDFFK
Sbjct: 95 LSTIPKCGGCHELILDRFILKVADRTWHAKCLQCSDCRIQLTDKCFARNGQLFCKEDFFK 154
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCAGC++GIPPTQVVRRAQD VYHL CF+CVMCARQLNTGDEFYLMEDRKLVCKPD
Sbjct: 155 RFGTKCAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCKPD 214
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YEAAK+K CLDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGLDMR
Sbjct: 215 YEAAKSKAAECLDGDQPNKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSQDTGLDMR 274
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNFSH 298
VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGG+SP KDE+K+DLDS FSH
Sbjct: 275 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGSSPRHDKLLDKDEMKVDLDS-FSH 332
>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
Length = 415
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/239 (83%), Positives = 216/239 (90%), Gaps = 8/239 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+++IPKCGGC +LILDRFILKV +RTWHA+CL+C +C L +KCFARNG LFCKEDFFK
Sbjct: 62 LSTIPKCGGCHELILDRFILKVADRTWHAKCLQCSDCRIQLTDKCFARNGQLFCKEDFFK 121
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCAGC++GIPPTQVVRRAQD VYHL CF+CVMCARQLNTGDEFYLMEDRKLVCKPD
Sbjct: 122 RFGTKCAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCKPD 181
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YEAAK+K CLDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGLDMR
Sbjct: 182 YEAAKSKAAECLDGDQPNKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSQDTGLDMR 241
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNFSH 298
VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGG+SP KDE+K+DLDS FSH
Sbjct: 242 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGSSPRHDKLLDKDEMKVDLDS-FSH 299
>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
Length = 366
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/256 (79%), Positives = 224/256 (87%), Gaps = 7/256 (2%)
Query: 52 FNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKC 111
+N + I + ASIPKCGGC +LILDRFILKVL+RTWHA+CL C++CG PL +KC
Sbjct: 3 YNSLPLTPISSICNADASIPKCGGCQELILDRFILKVLDRTWHAKCLNCNDCGGPLTDKC 62
Query: 112 FARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGD 171
FARNG ++CK+DFFKRFGTKCAGCE GIPPTQVVRRAQ+ VYHL CFAC MCARQLNTGD
Sbjct: 63 FARNGQVYCKDDFFKRFGTKCAGCEQGIPPTQVVRRAQENVYHLQCFACAMCARQLNTGD 122
Query: 172 EFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPAR 231
EFYLMED+KLVCKPDYEAAK KDG CLDGDQPNKRPRTTITAKQLETLK AYN SPKPAR
Sbjct: 123 EFYLMEDKKLVCKPDYEAAKTKDGVCLDGDQPNKRPRTTITAKQLETLKSAYNNSPKPAR 182
Query: 232 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP------- 284
HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRT+WSQYFRSMK G+SP
Sbjct: 183 HVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTKWSQYFRSMKDGSSPRDKLLDD 242
Query: 285 KDELKIDLDSNFSHSH 300
KD+L++DLDS+FSHSH
Sbjct: 243 KDDLRVDLDSSFSHSH 258
>gi|307200797|gb|EFN80850.1| LIM/homeobox protein Lhx3 [Harpegnathos saltator]
Length = 421
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 218/255 (85%), Gaps = 17/255 (6%)
Query: 61 MPVYMP---IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
+P ++P +SIPKCGGC ++ILD+++L+VLER WHARCL C +CGA L +KCFARNG
Sbjct: 73 LPPHIPEILYSSIPKCGGCQEVILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGH 132
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+FC+EDFFKRFGTKCAGC G+ P+QVVRRAQ+LVYHL CF+C +C+RQL+TGDEFYLME
Sbjct: 133 VFCREDFFKRFGTKCAGCSQGLSPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLME 192
Query: 178 DRKLVCKPDYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DRKLVCKPDYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVR
Sbjct: 193 DRKLVCKPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVR 252
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP------ 284
EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP
Sbjct: 253 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTGAGGHSPRHDKLL 312
Query: 285 -KDELKIDLDSNFSH 298
KDELK+DLDS F H
Sbjct: 313 DKDELKVDLDSTFGH 327
>gi|383858395|ref|XP_003704687.1| PREDICTED: LIM/homeobox protein Lhx3-like [Megachile rotundata]
Length = 463
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 217/255 (85%), Gaps = 17/255 (6%)
Query: 61 MPVYMP---IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
+P ++P +SIPKCGGC + ILD+++L+VLER WHARCL C +CGA L +KCFARNG
Sbjct: 76 LPAHLPEILYSSIPKCGGCQEAILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGH 135
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+FCK+DFFKRFGTKCAGC G+ P+QVVRRAQ+LVYHL CF+C +C+RQL+TGDEFYLME
Sbjct: 136 VFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLME 195
Query: 178 DRKLVCKPDYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DRKLVCKPDYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVR
Sbjct: 196 DRKLVCKPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVR 255
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP------ 284
EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP
Sbjct: 256 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTGAGGHSPRHDKLL 315
Query: 285 -KDELKIDLDSNFSH 298
KDELK+DLDS F H
Sbjct: 316 DKDELKVDLDSTFGH 330
>gi|195164566|ref|XP_002023117.1| GL21131 [Drosophila persimilis]
gi|194105202|gb|EDW27245.1| GL21131 [Drosophila persimilis]
Length = 490
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/242 (81%), Positives = 209/242 (86%), Gaps = 13/242 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFKR
Sbjct: 93 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKR 152
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK DY
Sbjct: 153 YGTKCSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 212
Query: 188 EAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
E AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGL
Sbjct: 213 EEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGL 271
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNF 296
DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS F
Sbjct: 272 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-F 330
Query: 297 SH 298
SH
Sbjct: 331 SH 332
>gi|195398039|ref|XP_002057632.1| GJ17996 [Drosophila virilis]
gi|194141286|gb|EDW57705.1| GJ17996 [Drosophila virilis]
Length = 545
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/242 (81%), Positives = 210/242 (86%), Gaps = 13/242 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC A L +KCFARNG LFCKEDFFKR
Sbjct: 121 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHAQLNDKCFARNGQLFCKEDFFKR 180
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK DY
Sbjct: 181 YGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 240
Query: 188 EAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
E AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGL
Sbjct: 241 EEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGL 299
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNF 296
DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS F
Sbjct: 300 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-F 358
Query: 297 SH 298
SH
Sbjct: 359 SH 360
>gi|198473411|ref|XP_001356286.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
gi|198139444|gb|EAL33349.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/242 (81%), Positives = 209/242 (86%), Gaps = 13/242 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFKR
Sbjct: 94 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKR 153
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK DY
Sbjct: 154 YGTKCSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 213
Query: 188 EAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
E AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGL
Sbjct: 214 EEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGL 272
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNF 296
DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS F
Sbjct: 273 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-F 331
Query: 297 SH 298
SH
Sbjct: 332 SH 333
>gi|225581041|gb|ACN94618.1| GA10505 [Drosophila miranda]
Length = 499
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/242 (81%), Positives = 209/242 (86%), Gaps = 13/242 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFKR
Sbjct: 93 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKR 152
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK DY
Sbjct: 153 YGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 212
Query: 188 EAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
E AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGL
Sbjct: 213 EEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGL 271
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNF 296
DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS F
Sbjct: 272 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-F 330
Query: 297 SH 298
SH
Sbjct: 331 SH 332
>gi|195164562|ref|XP_002023115.1| GL21181 [Drosophila persimilis]
gi|194105200|gb|EDW27243.1| GL21181 [Drosophila persimilis]
Length = 436
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/239 (82%), Positives = 207/239 (86%), Gaps = 9/239 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFK
Sbjct: 42 TATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFK 101
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK D
Sbjct: 102 RYGTKCSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRD 161
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE AKAK G LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGLDMR
Sbjct: 162 YEEAKAK-GLYLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMR 220
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNFSH 298
VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS FSH
Sbjct: 221 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-FSH 278
>gi|332018435|gb|EGI59029.1| LIM/homeobox protein Lhx3 [Acromyrmex echinatior]
Length = 467
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/255 (75%), Positives = 218/255 (85%), Gaps = 17/255 (6%)
Query: 61 MPVYMPI---ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
+P+++P ++IPKCGGC ++ILD+++L+VLER WHARCL C +CGA L +KCFARNG
Sbjct: 72 LPLHIPTILHSTIPKCGGCQEVILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGH 131
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+FCK+DFFKRFGTKCAGC G+ P+QVVRRAQ+ VYHL CF+C +C+RQL+TGDEFYLME
Sbjct: 132 VFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQEFVYHLTCFSCALCSRQLDTGDEFYLME 191
Query: 178 DRKLVCKPDYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DRKLVCKPDYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVR
Sbjct: 192 DRKLVCKPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVR 251
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP------ 284
EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP
Sbjct: 252 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGAGSGGHSPRHDKLL 311
Query: 285 -KDELKIDLDSNFSH 298
KDELK+DLDS F H
Sbjct: 312 DKDELKVDLDSTFGH 326
>gi|195115252|ref|XP_002002178.1| GI17237 [Drosophila mojavensis]
gi|193912753|gb|EDW11620.1| GI17237 [Drosophila mojavensis]
Length = 449
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/249 (79%), Positives = 215/249 (86%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC A L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHAQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|442628307|ref|NP_001260559.1| Lim3, isoform G [Drosophila melanogaster]
gi|440213916|gb|AGB93094.1| Lim3, isoform G [Drosophila melanogaster]
Length = 555
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/242 (81%), Positives = 209/242 (86%), Gaps = 13/242 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFKR
Sbjct: 117 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKR 176
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK DY
Sbjct: 177 YGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 236
Query: 188 EAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
E AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGL
Sbjct: 237 EEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGL 295
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNF 296
DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS F
Sbjct: 296 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-F 354
Query: 297 SH 298
SH
Sbjct: 355 SH 356
>gi|328782955|ref|XP_394135.3| PREDICTED: LIM/homeobox protein Lhx3 [Apis mellifera]
Length = 442
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/255 (75%), Positives = 216/255 (84%), Gaps = 17/255 (6%)
Query: 61 MPVYMP---IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
+P +P +SIPKCGGC + ILD+++L+VLER WHARCL C +CGA L +KCFARNG
Sbjct: 76 LPANLPEILYSSIPKCGGCQEAILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGH 135
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+FCK+DFFKRFGTKCAGC G+ P+QVVRRAQ+L+YHL CF+C +C+RQL+TGDEFYLME
Sbjct: 136 VFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLME 195
Query: 178 DRKLVCKPDYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DRKLVCKPDYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVR
Sbjct: 196 DRKLVCKPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVR 255
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP------ 284
EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP
Sbjct: 256 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTGAGGHSPRHDKLL 315
Query: 285 -KDELKIDLDSNFSH 298
KDELK+DLDS F H
Sbjct: 316 EKDELKVDLDSTFGH 330
>gi|380012090|ref|XP_003690122.1| PREDICTED: LIM/homeobox protein Lhx3-like [Apis florea]
Length = 465
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/255 (75%), Positives = 216/255 (84%), Gaps = 17/255 (6%)
Query: 61 MPVYMP---IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
+P +P +SIPKCGGC + ILD+++L+VLER WHARCL C +CGA L +KCFARNG
Sbjct: 78 LPANLPEILYSSIPKCGGCQEAILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGH 137
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+FCK+DFFKRFGTKCAGC G+ P+QVVRRAQ+L+YHL CF+C +C+RQL+TGDEFYLME
Sbjct: 138 VFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLME 197
Query: 178 DRKLVCKPDYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DRKLVCKPDYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVR
Sbjct: 198 DRKLVCKPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVR 257
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP------ 284
EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP
Sbjct: 258 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTGAGGHSPRHDKLL 317
Query: 285 -KDELKIDLDSNFSH 298
KDELK+DLDS F H
Sbjct: 318 EKDELKVDLDSTFGH 332
>gi|24585132|ref|NP_724161.1| Lim3, isoform B [Drosophila melanogaster]
gi|386769865|ref|NP_001246085.1| Lim3, isoform C [Drosophila melanogaster]
gi|386769867|ref|NP_001246086.1| Lim3, isoform D [Drosophila melanogaster]
gi|386769871|ref|NP_001246088.1| Lim3, isoform F [Drosophila melanogaster]
gi|22946804|gb|AAF53758.2| Lim3, isoform B [Drosophila melanogaster]
gi|124248338|gb|ABM92789.1| FI01025p [Drosophila melanogaster]
gi|383291570|gb|AFH03759.1| Lim3, isoform C [Drosophila melanogaster]
gi|383291571|gb|AFH03760.1| Lim3, isoform D [Drosophila melanogaster]
gi|383291573|gb|AFH03762.1| Lim3, isoform F [Drosophila melanogaster]
Length = 520
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/242 (81%), Positives = 209/242 (86%), Gaps = 13/242 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFKR
Sbjct: 117 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKR 176
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK DY
Sbjct: 177 YGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 236
Query: 188 EAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
E AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGL
Sbjct: 237 EEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGL 295
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNF 296
DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS F
Sbjct: 296 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-F 354
Query: 297 SH 298
SH
Sbjct: 355 SH 356
>gi|195345019|ref|XP_002039073.1| GM17030 [Drosophila sechellia]
gi|194134203|gb|EDW55719.1| GM17030 [Drosophila sechellia]
Length = 523
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/242 (81%), Positives = 209/242 (86%), Gaps = 13/242 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFKR
Sbjct: 122 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKR 181
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK DY
Sbjct: 182 YGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 241
Query: 188 EAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
E AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGL
Sbjct: 242 EEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGL 300
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNF 296
DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS F
Sbjct: 301 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS-F 359
Query: 297 SH 298
SH
Sbjct: 360 SH 361
>gi|350418514|ref|XP_003491882.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus impatiens]
Length = 463
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/255 (75%), Positives = 216/255 (84%), Gaps = 17/255 (6%)
Query: 61 MPVYMP---IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
+P +P +SIPKCGGC + ILD+++L+VLER WHARCL C +CGA L +KCFARNG
Sbjct: 76 LPANLPEILYSSIPKCGGCQEAILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGH 135
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+FCK+DFFKRFGTKCAGC G+ P+QVVRRAQ+L+YHL CF+C +C+RQL+TGDEFYLME
Sbjct: 136 VFCKDDFFKRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLME 195
Query: 178 DRKLVCKPDYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DRKLVCKPDYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVR
Sbjct: 196 DRKLVCKPDYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVR 255
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP------ 284
EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP
Sbjct: 256 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTGAGGHSPRHDKLL 315
Query: 285 -KDELKIDLDSNFSH 298
KDELK+DLD+ F H
Sbjct: 316 DKDELKVDLDATFGH 330
>gi|170055943|ref|XP_001863808.1| lim homeobox protein [Culex quinquefasciatus]
gi|167875776|gb|EDS39159.1| lim homeobox protein [Culex quinquefasciatus]
Length = 456
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/245 (80%), Positives = 213/245 (86%), Gaps = 15/245 (6%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+++IPKCGGC +LILDRFILKV +RTWHA+CL+C EC L EKCFARNG LFCK+DFFK
Sbjct: 60 LSTIPKCGGCHELILDRFILKVSDRTWHAKCLQCSECHVQLNEKCFARNGQLFCKDDFFK 119
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKCA C++GIPPTQVVRRAQD VYHL CF C MC+RQLNTGDEFYLMED KLVCKPD
Sbjct: 120 RYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLMEDGKLVCKPD 179
Query: 187 YEAAKAK-----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
YEAAKAK DG+ LDG+ NKRPRTTITAKQLETLK AYN+SPKPARHVREQLSQDT
Sbjct: 180 YEAAKAKGLYLSDGS-LDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLSQDT 238
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP--------KDELKIDLD 293
GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGG+SP KDELKIDLD
Sbjct: 239 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGSSPGRHDKLLDKDELKIDLD 298
Query: 294 SNFSH 298
S FSH
Sbjct: 299 S-FSH 302
>gi|386769869|ref|NP_001246087.1| Lim3, isoform E [Drosophila melanogaster]
gi|383291572|gb|AFH03761.1| Lim3, isoform E [Drosophila melanogaster]
Length = 405
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/243 (81%), Positives = 210/243 (86%), Gaps = 13/243 (5%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFK
Sbjct: 1 MATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFK 60
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK D
Sbjct: 61 RYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRD 120
Query: 187 YEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
YE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTG
Sbjct: 121 YEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTG 179
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSN 295
LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D DS
Sbjct: 180 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYDS- 238
Query: 296 FSH 298
FSH
Sbjct: 239 FSH 241
>gi|194759358|ref|XP_001961916.1| GF15212 [Drosophila ananassae]
gi|190615613|gb|EDV31137.1| GF15212 [Drosophila ananassae]
Length = 444
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 214/249 (85%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|195050066|ref|XP_001992820.1| GH13485 [Drosophila grimshawi]
gi|193899879|gb|EDV98745.1| GH13485 [Drosophila grimshawi]
Length = 451
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 215/249 (86%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC + L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHSQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|195438224|ref|XP_002067037.1| GK24239 [Drosophila willistoni]
gi|194163122|gb|EDW78023.1| GK24239 [Drosophila willistoni]
Length = 448
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 214/249 (85%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|307174398|gb|EFN64917.1| LIM/homeobox protein Lhx3 [Camponotus floridanus]
Length = 467
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/243 (78%), Positives = 212/243 (87%), Gaps = 13/243 (5%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
+IPKCGGC ++ILD+++L+VLER WHARCL C +CGA L +KCFARNG +FCK+DFFKRF
Sbjct: 83 TIPKCGGCQEVILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGHVFCKDDFFKRF 142
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
GTKCAGC G+ P+QVVRRAQ+LVYHL CF+C +C+RQL+TGDEFYLMEDRKLVCKPDYE
Sbjct: 143 GTKCAGCGQGLAPSQVVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYE 202
Query: 189 AAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVREQLSQDTGLDM
Sbjct: 203 QAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQDTGLDM 262
Query: 246 RVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSP-------KDELKIDLDSN 295
RVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP KDELK+DLDS
Sbjct: 263 RVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKSGAGGHSPRHDKLLDKDELKVDLDST 322
Query: 296 FSH 298
F H
Sbjct: 323 FGH 325
>gi|195484367|ref|XP_002090664.1| GE12672 [Drosophila yakuba]
gi|194176765|gb|EDW90376.1| GE12672 [Drosophila yakuba]
Length = 442
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 214/249 (85%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|4106560|gb|AAD02889.1| LIM homeodomain transcription factor [Drosophila melanogaster]
Length = 440
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 214/249 (85%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster]
gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster]
Length = 440
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 214/249 (85%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|195580083|ref|XP_002079885.1| GD21780 [Drosophila simulans]
gi|194191894|gb|EDX05470.1| GD21780 [Drosophila simulans]
Length = 438
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 214/249 (85%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|194879752|ref|XP_001974294.1| GG21652 [Drosophila erecta]
gi|190657481|gb|EDV54694.1| GG21652 [Drosophila erecta]
Length = 442
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/249 (79%), Positives = 214/249 (85%), Gaps = 14/249 (5%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFC 120
+P ++ +++IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFC
Sbjct: 31 LPEFL-LSTIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFC 89
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
KEDFFKR+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRK
Sbjct: 90 KEDFFKRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRK 149
Query: 181 LVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
L+CK DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQ
Sbjct: 150 LICKRDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 208
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELK 289
LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK
Sbjct: 209 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELK 268
Query: 290 IDLDSNFSH 298
+D DS FSH
Sbjct: 269 VDYDS-FSH 276
>gi|322793254|gb|EFZ16911.1| hypothetical protein SINV_14186 [Solenopsis invicta]
Length = 392
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/245 (77%), Positives = 212/245 (86%), Gaps = 14/245 (5%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IPKCGGC ++ILD+++L+VLER WHARCL C +CGA L +KCFARNG +FCK+DFFKR
Sbjct: 1 ATIPKCGGCQEVILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGHVFCKDDFFKR 60
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKCAGC G+ P+QVVRRAQ+ VYHL CF+C +C+RQL+TGDEFYLMEDRKLVCKPDY
Sbjct: 61 FGTKCAGCGQGLAPSQVVRRAQEFVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDY 120
Query: 188 EAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
E AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVREQLSQDTGLD
Sbjct: 121 EQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQDTGLD 180
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP-------KDELKIDLD 293
MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP KDELK+DLD
Sbjct: 181 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGAGAGGHSPRHDKLLDKDELKVDLD 240
Query: 294 SNFSH 298
S F H
Sbjct: 241 STFGH 245
>gi|312374311|gb|EFR21889.1| hypothetical protein AND_16082 [Anopheles darlingi]
Length = 568
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/245 (79%), Positives = 212/245 (86%), Gaps = 15/245 (6%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+++IPKCGGC +LILDRFILKV +RTWHA+CL+C EC L EKCFARNG LFCK+DFFK
Sbjct: 169 LSTIPKCGGCHELILDRFILKVSDRTWHAKCLQCSECRVQLNEKCFARNGQLFCKDDFFK 228
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKCA C++GIPPTQVVRRAQD VYHL CF C MC+RQLNTGDE+YLMED KL+CKPD
Sbjct: 229 RYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEYYLMEDCKLICKPD 288
Query: 187 YEAAKAK-----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
YEAAKAK DG+ LDG+ NKRPRTTITAKQLETLK AYN+SPKPARHVREQLSQDT
Sbjct: 289 YEAAKAKGLYLSDGS-LDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLSQDT 347
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP--------KDELKIDLD 293
GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG +SP KDELKIDLD
Sbjct: 348 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTSSPSRHDKLLDKDELKIDLD 407
Query: 294 SNFSH 298
S FSH
Sbjct: 408 S-FSH 411
>gi|157127146|ref|XP_001661055.1| lim homeobox protein [Aedes aegypti]
gi|108873020|gb|EAT37245.1| AAEL010744-PA [Aedes aegypti]
Length = 459
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/253 (76%), Positives = 213/253 (84%), Gaps = 14/253 (5%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+++IPKCGGC +LILDRFILKV +RTWHA+CL+C +C L EKCFARNG LFCK+DFFK
Sbjct: 57 LSTIPKCGGCHELILDRFILKVSDRTWHAKCLQCSDCHIQLNEKCFARNGQLFCKDDFFK 116
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKCA C++GIPPTQVVRRAQD VYHL CF C MC+RQLNTGDEFYL+ED KL+CKPD
Sbjct: 117 RYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLIEDGKLICKPD 176
Query: 187 YEAAKAK-----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
YEAAKAK DG+ LDG+ NKRPRTTITAKQLETLK AYN+SPKPARHVREQLSQDT
Sbjct: 177 YEAAKAKGLYLSDGS-LDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLSQDT 235
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP--------KDELKIDLD 293
GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGG SP KDELKIDLD
Sbjct: 236 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGGSPSRHDKLLDKDELKIDLD 295
Query: 294 SNFSHSHGKTAFS 306
S H +FS
Sbjct: 296 SFSHHDLSNDSFS 308
>gi|157115167|ref|XP_001652548.1| lim homeobox protein [Aedes aegypti]
gi|108876992|gb|EAT41217.1| AAEL007120-PA [Aedes aegypti]
Length = 459
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/253 (76%), Positives = 213/253 (84%), Gaps = 14/253 (5%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+++IPKCGGC +LILDRFILKV +RTWHA+CL+C +C L EKCFARNG LFCK+DFFK
Sbjct: 57 LSTIPKCGGCHELILDRFILKVSDRTWHAKCLQCSDCHIQLNEKCFARNGQLFCKDDFFK 116
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKCA C++GIPPTQVVRRAQD VYHL CF C MC+RQLNTGDEFYL+ED KL+CKPD
Sbjct: 117 RYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLIEDGKLICKPD 176
Query: 187 YEAAKAK-----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
YEAAKAK DG+ LDG+ NKRPRTTITAKQLETLK AYN+SPKPARHVREQLSQDT
Sbjct: 177 YEAAKAKGLYLSDGS-LDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLSQDT 235
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP--------KDELKIDLD 293
GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGG SP KDELKIDLD
Sbjct: 236 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGGSPSRHDKLLDKDELKIDLD 295
Query: 294 SNFSHSHGKTAFS 306
S H +FS
Sbjct: 296 SFSHHDLSNDSFS 308
>gi|28316900|gb|AAO39472.1| RE70568p [Drosophila melanogaster]
Length = 523
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/245 (80%), Positives = 209/245 (85%), Gaps = 16/245 (6%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK- 126
A+IPKCGGC +LILDRFILKVLERTWHA+CL+C EC L +KCFARNG LFCKEDFFK
Sbjct: 117 ATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKS 176
Query: 127 --RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
R+GTKC+ C+MGIPPTQVVRRAQD VYHL CF C MC+R LNTGDEFYLMEDRKL+CK
Sbjct: 177 NRRYGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 236
Query: 185 PDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
DYE AKAK DG+ LDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQD
Sbjct: 237 RDYEEAKAKGLYLDGS-LDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQD 295
Query: 241 TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLD 293
TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG SP KDELK+D D
Sbjct: 296 TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVDYD 355
Query: 294 SNFSH 298
S FSH
Sbjct: 356 S-FSH 359
>gi|340722532|ref|XP_003399658.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus terrestris]
Length = 486
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/247 (77%), Positives = 211/247 (85%), Gaps = 17/247 (6%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK-- 126
SIPKCGGC + ILD+++L+VLER WHARCL C +CGA L +KCFARNG +FCK+DFFK
Sbjct: 107 SIPKCGGCQEAILDKYVLRVLERCWHARCLTCRDCGARLTDKCFARNGHVFCKDDFFKYG 166
Query: 127 -RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
RFGTKCAGC G+ P+QVVRRAQ+L+YHL CF+C +C+RQL+TGDEFYLMEDRKLVCKP
Sbjct: 167 RRFGTKCAGCGQGLAPSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKP 226
Query: 186 DYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
DYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYNTSPKPARHVREQLSQDTG
Sbjct: 227 DYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNTSPKPARHVREQLSQDTG 286
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSP-------KDELKID 291
LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK GG SP KDELK+D
Sbjct: 287 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTGAGGHSPRHDKLLDKDELKVD 346
Query: 292 LDSNFSH 298
LDS F H
Sbjct: 347 LDSTFGH 353
>gi|158299816|ref|XP_319836.3| AGAP009088-PA [Anopheles gambiae str. PEST]
gi|157013700|gb|EAA14726.3| AGAP009088-PA [Anopheles gambiae str. PEST]
Length = 389
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/245 (79%), Positives = 212/245 (86%), Gaps = 15/245 (6%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+++IPKCGGC +LILDRFILKV +RTWHA+CL+C EC L EKCFARNG LFCK+DFFK
Sbjct: 35 LSTIPKCGGCHELILDRFILKVSDRTWHAKCLQCSECRVQLNEKCFARNGQLFCKDDFFK 94
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKCA C++GIPPTQVVRRAQD VYHL CF C MC+RQLNTGDEFYLMED KL+CKPD
Sbjct: 95 RYGTKCAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLMEDCKLICKPD 154
Query: 187 YEAAKAK-----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
YEAAKAK DG+ LDG+ NKRPRTTITAKQLETLK AYN+SPKPARHVREQLSQDT
Sbjct: 155 YEAAKAKGLYLSDGS-LDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLSQDT 213
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP--------KDELKIDLD 293
GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG +SP KDELKIDLD
Sbjct: 214 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGTSSPSRVDKLLDKDELKIDLD 273
Query: 294 SNFSH 298
S FSH
Sbjct: 274 S-FSH 277
>gi|357611533|gb|EHJ67530.1| lim homeobox protein [Danaus plexippus]
Length = 481
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/241 (77%), Positives = 203/241 (84%), Gaps = 10/241 (4%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
++SIPKCGGC ++I+DR++LKV +RTWHA CL+C EC A L+ KCFARN L+C EDFFK
Sbjct: 130 LSSIPKCGGCHEMIVDRYVLKVSDRTWHAGCLRCVECRAMLSGKCFARNNQLYCTEDFFK 189
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKCAGC GIPPTQVVRRAQ VYHL CFAC CAR LNTGDEFYLMED KLVCKPD
Sbjct: 190 RYGTKCAGCGQGIPPTQVVRRAQAHVYHLRCFACAACARTLNTGDEFYLMEDGKLVCKPD 249
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YEAA+AK LDGD +KRPRTTITAKQLETLK AY++SPKPARHVREQL+QDTGLDMR
Sbjct: 250 YEAARAKGEGSLDGDAASKRPRTTITAKQLETLKSAYSSSPKPARHVREQLAQDTGLDMR 309
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTS---------PKDELKIDLDSNFS 297
VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGG S KDELKIDLDS FS
Sbjct: 310 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGGSGSPRHDRLLDKDELKIDLDS-FS 368
Query: 298 H 298
H
Sbjct: 369 H 369
>gi|345493999|ref|XP_001603795.2| PREDICTED: LIM/homeobox protein Lhx3-like [Nasonia vitripennis]
Length = 450
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/246 (74%), Positives = 206/246 (83%), Gaps = 15/246 (6%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARN-GLLFCKEDFFK 126
ASIPKCGGC + ILDR++L+V++R WHA CL C +CG L +KC+ARN G +FCK+DFFK
Sbjct: 50 ASIPKCGGCQEAILDRYVLRVMDRCWHAGCLTCRDCGVRLTDKCYARNNGHVFCKDDFFK 109
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKP 185
R+GTKCAGC G+ P+QVVRRAQD YHL CF+C MC+RQL+TGDEFYLM ED KLVCKP
Sbjct: 110 RYGTKCAGCGQGLAPSQVVRRAQDFTYHLTCFSCAMCSRQLDTGDEFYLMVEDAKLVCKP 169
Query: 186 DYEAAKAK---DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
DYE AKAK DG +DGDQPNKRPRTTITAKQLETLK+AYN SPKPARHVREQLSQDTG
Sbjct: 170 DYEQAKAKELADGGSIDGDQPNKRPRTTITAKQLETLKLAYNNSPKPARHVREQLSQDTG 229
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSP-------KDELKIDL 292
LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ+FR MK GG SP KDELK+DL
Sbjct: 230 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQFFRGMKGSSGGHSPRHEKLLDKDELKVDL 289
Query: 293 DSNFSH 298
DS+F H
Sbjct: 290 DSSFGH 295
>gi|391327822|ref|XP_003738394.1| PREDICTED: LIM/homeobox protein Lhx3-like [Metaseiulus
occidentalis]
Length = 408
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/261 (67%), Positives = 200/261 (76%), Gaps = 22/261 (8%)
Query: 15 GLAVQRGNGLTVGICASKLHDL---LHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIP 71
G V+ G+ I A+ LH L L + S + SS+ ++ A+IP
Sbjct: 4 GFVVEPGSAEEPAIDATLLHSLGPNLRSSPHHSKLTLLSSYKKLE-----------ATIP 52
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
KC GCGD+ILDRFILKVLER WH++CLKC +C APLA KCFAR G L+CK+DFFKR+GTK
Sbjct: 53 KCAGCGDIILDRFILKVLERPWHSKCLKCSDCQAPLANKCFARAGHLYCKDDFFKRYGTK 112
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CAGCE GIPPTQVVRRAQ+ VYHL CF+C++C RQLNTGDEFYLMED KLVCK DYEAAK
Sbjct: 113 CAGCEQGIPPTQVVRRAQENVYHLACFSCILCKRQLNTGDEFYLMEDNKLVCKADYEAAK 172
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
A++G+ KRPRTTITAKQLETLK AYN SPKPARHVREQLS+DTGLDMRVVQVW
Sbjct: 173 AREGS-------TKRPRTTITAKQLETLKSAYNQSPKPARHVREQLSRDTGLDMRVVQVW 225
Query: 252 FQNRRAKEKRLKKDA-GRTRW 271
FQNRRAKEKRLKKDA G+ RW
Sbjct: 226 FQNRRAKEKRLKKDAGGKARW 246
>gi|443711321|gb|ELU05149.1| hypothetical protein CAPTEDRAFT_228137 [Capitella teleta]
Length = 506
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/222 (74%), Positives = 188/222 (84%), Gaps = 4/222 (1%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+A+IPKC GCGD ILDRFILKVL+R+WH++CL C +C L++KCF++ ++CKEDFF+
Sbjct: 138 LAAIPKCAGCGDAILDRFILKVLDRSWHSKCLMCADCNGHLSDKCFSKGDKVYCKEDFFR 197
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCAGCE GIPPTQVVRRAQD VYHL CFAC MC++QLNTGDEFYLM+D+KLVCK D
Sbjct: 198 RFGTKCAGCEQGIPPTQVVRRAQDNVYHLECFACSMCSQQLNTGDEFYLMDDKKLVCKGD 257
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE+ KAK+ D D NKRPRTTITAKQLE LK AYN SPKPARHVREQLS +TGLDMR
Sbjct: 258 YESNKAKE---FDLDNANKRPRTTITAKQLEALKRAYNESPKPARHVREQLSAETGLDMR 314
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDEL 288
VVQVWFQNRRAKEKRLKKDAGR RWS YFRS+K S DEL
Sbjct: 315 VVQVWFQNRRAKEKRLKKDAGRNRWSPYFRSVKSERS-ADEL 355
>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
Length = 387
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 165/238 (69%), Positives = 192/238 (80%), Gaps = 8/238 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH++CLKC +C PLA+KCF+R G ++CKEDF
Sbjct: 23 VPLQQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLADKCFSRAGSVYCKEDF 82
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKCA C+ GIPPTQVVR+AQD VYHL+CFAC+MC+RQL TGDEFYLMED +LVCK
Sbjct: 83 FKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCK 142
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYEAAK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 143 VDYEAAKQND----DSEAGTKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLD 198
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDELKIDLDSNFSHS 299
MRVVQVWFQNRRAKEKRLKKDAGR RW+Q+++S+K GGT + E D D+ S S
Sbjct: 199 MRVVQVWFQNRRAKEKRLKKDAGRHRWTQFYKSVKRSRGGTKVEKESSAD-DAGLSDS 255
>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
rubripes]
Length = 406
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/252 (67%), Positives = 195/252 (77%), Gaps = 9/252 (3%)
Query: 41 HAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKC 100
H GSS S +F+ + G + + P A IP C GC I+DRFILKVL+R WH++CLKC
Sbjct: 5 HPGSSCQSSGNFSRYN-SGQVGLLSP-AEIPVCAGCNQHIVDRFILKVLDRHWHSKCLKC 62
Query: 101 HECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
+C A LAEKCF+R ++CKEDFFKRFGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC
Sbjct: 63 SDCQAQLAEKCFSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFAC 122
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLK 220
++C RQL TGDE+YLMED +LVCK DYE AK + + D KRPRTTITAKQLETLK
Sbjct: 123 IVCKRQLATGDEYYLMEDSRLVCKTDYETAKQR-----EADSTAKRPRTTITAKQLETLK 177
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK- 279
AYN SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 178 NAYNNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKR 237
Query: 280 -GGTSPKDELKI 290
G+S D+ I
Sbjct: 238 SRGSSKSDKDSI 249
>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
Length = 389
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/238 (68%), Positives = 191/238 (80%), Gaps = 8/238 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH++CLKC +C PLA+KCF+R G ++CKEDF
Sbjct: 23 VPLQQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLADKCFSRAGSVYCKEDF 82
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKCA C+ GIPP QVVR+AQD VYHL+CFAC+MC+RQL TGDEFYLMED +LVCK
Sbjct: 83 FKRFGTKCASCQQGIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCK 142
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYEAAK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 143 VDYEAAKQND----DSEAGTKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLD 198
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDELKIDLDSNFSHS 299
MRVVQVWFQNRRAKEKRLKKDAGR RW+Q+++S+K GGT + E D D+ S S
Sbjct: 199 MRVVQVWFQNRRAKEKRLKKDAGRHRWTQFYKSVKRSRGGTKVEKESSAD-DAGLSDS 255
>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma belcheri]
Length = 402
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/259 (66%), Positives = 198/259 (76%), Gaps = 21/259 (8%)
Query: 62 PVYMPI----ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
PV M I +IPKC GC +ILDRFILKVL+R+WHA+CL+C +C A L +KCF+R+G
Sbjct: 26 PVLMDIRVNSPNIPKCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTDKCFSRDGH 85
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
++CK+DFF+RFGTKCAGC GIPPTQVVRRAQD +YHL CFAC+MC RQL TGDEFYLME
Sbjct: 86 VYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLME 145
Query: 178 DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
D KLVCK DYEAAK ++ L+G Q KRPRTTITAKQLETLK AY SPKPARHVREQL
Sbjct: 146 DAKLVCKSDYEAAKQREME-LEGTQ--KRPRTTITAKQLETLKQAYQNSPKPARHVREQL 202
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRS------MKGGTSPK------ 285
SQ+TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR +K SP
Sbjct: 203 SQETGLDMRVVQVWFQNRRAKEKRLKKDAGRARWGQYFRGNNNNNNIKRKGSPARSEQNG 262
Query: 286 --DELKIDLDSNFSHSHGK 302
D+L DL + +S G+
Sbjct: 263 AVDDLDADLSKDIVYSDGQ 281
>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
Length = 389
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 163/238 (68%), Positives = 190/238 (79%), Gaps = 8/238 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH++CLKC +C PLA+KCF+R G ++CKEDF
Sbjct: 23 VPLQQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLADKCFSRAGSVYCKEDF 82
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKCA C+ GIPPTQVVR+AQD VYHL+CFAC+MC+RQL TGDEFYLMED +LVCK
Sbjct: 83 FKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCK 142
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 143 VDYETAKQND----DSEAGTKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLD 198
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDELKIDLDSNFSHS 299
MRVVQVWFQNRRAKEKRLKKDAGR RW+Q+++S+K GG + E D D+ S S
Sbjct: 199 MRVVQVWFQNRRAKEKRLKKDAGRHRWTQFYKSVKRSRGGAKVEKESSAD-DAGLSDS 255
>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 386
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 164/234 (70%), Positives = 185/234 (79%), Gaps = 9/234 (3%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFF
Sbjct: 13 PAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFF 72
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
KRFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK
Sbjct: 73 KRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKA 132
Query: 186 DYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
DYE AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDM
Sbjct: 133 DYETAKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDM 187
Query: 246 RVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
RVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 188 RVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 241
>gi|260793678|ref|XP_002591838.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277049|gb|EEN47849.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 402
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 164/219 (74%), Positives = 184/219 (84%), Gaps = 7/219 (3%)
Query: 62 PVYMPI----ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
PV M I +IPKC GC +ILDRFILKVL+R+WHA+CL+C +C A L +KCF+R+G
Sbjct: 26 PVLMDIRVNSPNIPKCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTDKCFSRDGH 85
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
++CK+DFF+RFGTKCAGC GIPPTQVVRRAQD +YHL CFAC+MC RQL TGDEFYLME
Sbjct: 86 VYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLME 145
Query: 178 DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
D KLVCK DYEAAK ++ L+G Q KRPRTTITAKQLETLK AY SPKPARHVREQL
Sbjct: 146 DAKLVCKSDYEAAKQREME-LEGTQ--KRPRTTITAKQLETLKQAYQNSPKPARHVREQL 202
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFR 276
SQ+TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR
Sbjct: 203 SQETGLDMRVVQVWFQNRRAKEKRLKKDAGRARWGQYFR 241
>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
Length = 402
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRSRGGSKSDKDSVQEGQDSD 257
>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
Length = 373
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 164/233 (70%), Positives = 185/233 (79%), Gaps = 9/233 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+ IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFK
Sbjct: 1 MQQIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFK 60
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK D
Sbjct: 61 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 120
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMR
Sbjct: 121 YETAKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMR 175
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VVQVWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++ DS+
Sbjct: 176 VVQVWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRSRGGSKSDKDSVQEGQDSD 228
>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 28 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 87
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 88 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 148 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++ DS+
Sbjct: 203 VWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRSRGGSKSDKDSVQEGQDSD 252
>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
Length = 397
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 28 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 87
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 88 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 148 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++ DS+
Sbjct: 203 VWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRSRGGSKSDKDSVQEGQDSD 252
>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
Length = 396
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/234 (69%), Positives = 185/234 (79%), Gaps = 9/234 (3%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFF
Sbjct: 23 PAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFF 82
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+RFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK
Sbjct: 83 RRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKA 142
Query: 186 DYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
DYE AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDM
Sbjct: 143 DYETAKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDM 197
Query: 246 RVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
RVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 198 RVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 251
>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Cavia porcellus]
Length = 403
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 162/224 (72%), Positives = 183/224 (81%), Gaps = 8/224 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CL+C +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLRCSDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYEA
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYEA 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDELKI 290
VWFQNRRAKEKRLKKDAGR RW QYFR+MK GG+S D+ I
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSSKSDKDSI 251
>gi|405977546|gb|EKC41989.1| LIM/homeobox protein Lhx3 [Crassostrea gigas]
Length = 432
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 165/247 (66%), Positives = 187/247 (75%), Gaps = 35/247 (14%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK- 126
A+IPKC GCG+ ILDRFILKVL+R+WH+RCL+CH+C A L++KCF++ +FCK+DFF+
Sbjct: 42 AAIPKCAGCGEPILDRFILKVLDRSWHSRCLQCHDCHARLSDKCFSKGEKVFCKDDFFRW 101
Query: 127 ----------------------------------RFGTKCAGCEMGIPPTQVVRRAQDLV 152
R+GTKCAGCE GIPPT+VVRRAQD V
Sbjct: 102 SYVYLSMQPDLIGPLSDHGVTRPPKTVRERVGALRYGTKCAGCEKGIPPTEVVRRAQDNV 161
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTIT 212
YHL CFAC+MC+RQLNTGDEFYLMEDRKLVCK DYE+AKA+ N D D NKRPRTTIT
Sbjct: 162 YHLECFACLMCSRQLNTGDEFYLMEDRKLVCKADYESAKARGINEYDIDAANKRPRTTIT 221
Query: 213 AKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWS 272
AKQLE LK AYN SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RWS
Sbjct: 222 AKQLEALKRAYNESPKPARHVREQLSAETGLDMRVVQVWFQNRRAKEKRLKKDAGRNRWS 281
Query: 273 QYFRSMK 279
YFR +K
Sbjct: 282 PYFRQLK 288
>gi|260793680|ref|XP_002591839.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277050|gb|EEN47850.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 278
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/219 (74%), Positives = 184/219 (84%), Gaps = 7/219 (3%)
Query: 62 PVYMPI----ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGL 117
PV M I +IPKC GC +ILDRFILKVL+R+WHA+CL+C +C A L +KCF+R+G
Sbjct: 26 PVLMDIRVNSPNIPKCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTDKCFSRDGH 85
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
++CK+DFF+RFGTKCAGC GIPPTQVVRRAQD +YHL CFAC+MC RQL TGDEFYLME
Sbjct: 86 VYCKDDFFRRFGTKCAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLME 145
Query: 178 DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
D KLVCK DYEAAK ++ L+G Q KRPRTTITAKQLETLK AY SPKPARHVREQL
Sbjct: 146 DAKLVCKSDYEAAKQREME-LEGTQ--KRPRTTITAKQLETLKQAYQNSPKPARHVREQL 202
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFR 276
SQ+TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR
Sbjct: 203 SQETGLDMRVVQVWFQNRRAKEKRLKKDAGRARWGQYFR 241
>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
Length = 402
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
+P C GC ILDRFILK L+R WH++CLKC +C APLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 VPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFRSMK S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRSRGSSKSDKDSVQEGQDSD 257
>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
Length = 402
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 257
>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
Length = 402
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 257
>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
rubripes]
Length = 399
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/252 (66%), Positives = 190/252 (75%), Gaps = 16/252 (6%)
Query: 41 HAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKC 100
H GSS S +F+ Y IP C GC I+DRFILKVL+R WH++CLKC
Sbjct: 5 HPGSSCQSSGNFSR---------YNSGQEIPVCAGCNQHIVDRFILKVLDRHWHSKCLKC 55
Query: 101 HECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
+C A LAEKCF+R ++CKEDFFKRFGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC
Sbjct: 56 SDCQAQLAEKCFSRGDSVYCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFAC 115
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLK 220
++C RQL TGDE+YLMED +LVCK DYE AK + + D KRPRTTITAKQLETLK
Sbjct: 116 IVCKRQLATGDEYYLMEDSRLVCKTDYETAKQR-----EADSTAKRPRTTITAKQLETLK 170
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK- 279
AYN SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 171 NAYNNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKR 230
Query: 280 -GGTSPKDELKI 290
G+S D+ I
Sbjct: 231 SRGSSKSDKDSI 242
>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
Length = 373
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/233 (69%), Positives = 185/233 (79%), Gaps = 9/233 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+ IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFK
Sbjct: 1 MQQIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFK 60
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK D
Sbjct: 61 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 120
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMR
Sbjct: 121 YETAKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMR 175
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 176 VVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 228
>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 402
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 257
>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
Length = 402
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 257
>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
Length = 397
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 28 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 87
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 88 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 148 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 203 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 252
>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3
gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 397
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 28 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 87
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 88 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 148 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 203 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 252
>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
Length = 397
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 28 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 87
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 88 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 148 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 203 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 252
>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 444
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/223 (72%), Positives = 181/223 (81%), Gaps = 7/223 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVLER WH++CLKC +C A LAEKCF+R ++CKEDFFKRFG
Sbjct: 2 IPVCAGCNQHIVDRFILKVLERHWHSKCLKCSDCQAQLAEKCFSRGDSVYCKEDFFKRFG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDE+YLMED +LVCK DYE
Sbjct: 62 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYET 121
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 122 AKQR-----EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 176
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G+S D+ I
Sbjct: 177 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSI 219
>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/233 (69%), Positives = 188/233 (80%), Gaps = 8/233 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP+C GC ILD+FILKVL+R WH++CLKC +C PLA+KCF+R G ++CKEDFFKRFG
Sbjct: 2 IPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLADKCFSRAGSVYCKEDFFKRFG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPP QVVR+AQD VYHL+CFAC+MC+RQL TGDEFYLMED +LVCK DYEA
Sbjct: 62 TKCASCQKGIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYEA 121
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 122 AKQND----DSEAGTKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLDMRVVQ 177
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDELKIDLDSNFSHS 299
VWFQNRRAKEKRLKKDAGR RW+Q+++S+K GGT + E D D+ S S
Sbjct: 178 VWFQNRRAKEKRLKKDAGRHRWTQFYKSVKRSRGGTKVEKESSAD-DAGLSDS 229
>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
rubripes]
Length = 390
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 161/223 (72%), Positives = 181/223 (81%), Gaps = 7/223 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C A LAEKCF+R ++CKEDFFKRFG
Sbjct: 16 IPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAEKCFSRGDSVYCKEDFFKRFG 75
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDE+YLMED +LVCK DYE
Sbjct: 76 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYET 135
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 136 AKQR-----EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 190
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G+S D+ I
Sbjct: 191 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSI 233
>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
Length = 403
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/224 (72%), Positives = 182/224 (81%), Gaps = 9/224 (4%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C APLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK 289
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRARGGSKSDKDSVQ 251
>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
caballus]
Length = 401
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/224 (72%), Positives = 181/224 (80%), Gaps = 9/224 (4%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK 289
VWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRARGGSKSDKDSIQ 249
>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
Length = 402
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFF+RFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFRRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 257
>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
Length = 397
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 184/230 (80%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFF+RFG
Sbjct: 28 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFRRFG 87
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 88 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 148 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 203 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 252
>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
Length = 402
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSD 257
>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
Length = 403
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHIPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSD 257
>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
Length = 383
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 162/224 (72%), Positives = 181/224 (80%), Gaps = 9/224 (4%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R L+CK+DFFKRFG
Sbjct: 13 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESLYCKDDFFKRFG 72
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 73 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 132
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 133 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 187
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK 289
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++
Sbjct: 188 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRARGGSKSDKDSVQ 231
>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
Length = 399
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 164/234 (70%), Positives = 185/234 (79%), Gaps = 12/234 (5%)
Query: 59 GIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLL 118
G++P A IP C GC I+DRFILKVL+R WH++CLKC +C LAEKCF+R +
Sbjct: 23 GLLP-----AEIPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGV 77
Query: 119 FCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
+CKEDFFKRFGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDEFYLMED
Sbjct: 78 YCKEDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMED 137
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
+LVCK DYE AK + + + KRPRTTITAKQLETLK AYN SPKPARHVREQLS
Sbjct: 138 SRLVCKADYETAKQR-----EAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLS 192
Query: 239 QDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
+TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK GTS D+ I
Sbjct: 193 SETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGTSKSDKDSI 246
>gi|259013380|ref|NP_001158395.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
gi|90659991|gb|ABD97272.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
Length = 390
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 163/235 (69%), Positives = 187/235 (79%), Gaps = 9/235 (3%)
Query: 47 SFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAP 106
SF+S+ N+++ + IPKC GC ILDRFILKV +R WH++CLKC +C A
Sbjct: 16 SFASAHNEINS-------CKSSQIPKCSGCEHPILDRFILKVQDRAWHSKCLKCTDCQAQ 68
Query: 107 LAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQ 166
L++KC++R G ++CKEDFFKRFGTKC+ C+ GIPPTQVVRRAQD VYHL CFACVMC RQ
Sbjct: 69 LSDKCYSRGGQVYCKEDFFKRFGTKCSACDQGIPPTQVVRRAQDNVYHLQCFACVMCNRQ 128
Query: 167 LNTGDEFYLMEDRKLVCKPDYEAAKAKDG--NCLDGDQPNKRPRTTITAKQLETLKMAYN 224
L TGDEFYLM D KLVCK DYEAAK + G + L+ D NKRPRTTI+AKQLETLK AY
Sbjct: 129 LATGDEFYLMNDNKLVCKGDYEAAKVRGGTDSDLEMDASNKRPRTTISAKQLETLKTAYA 188
Query: 225 TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDA R RWSQYFR +K
Sbjct: 189 NSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDANRQRWSQYFRGVK 243
>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
Length = 391
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 180/215 (83%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH++CLKC +C A LA+KCF+R G ++CKEDF
Sbjct: 25 VPLQQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCHALLADKCFSRAGNVYCKEDF 84
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKCA C+ GIPPTQVVR+AQD VYHL+CFACVMC+RQL TGDEFYLMED +LVCK
Sbjct: 85 FKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCK 144
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 145 EDYETAKQND----DSETGAKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLD 200
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 201 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 235
>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
Length = 400
Score = 339 bits (870), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSD 255
>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
Length = 402
Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSD 257
>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
Length = 665
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/223 (72%), Positives = 178/223 (79%), Gaps = 7/223 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C LAEKCF+R ++CKEDFFKRFG
Sbjct: 25 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGVYCKEDFFKRFG 84
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK DYE
Sbjct: 85 TKCAACHQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYET 144
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 145 AKQREAEST-----AKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
VWFQNRRAKEKRLKKDAGR RW QYFR+MK GTS D+ I
Sbjct: 200 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGTSKSDKDSI 242
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/124 (74%), Positives = 98/124 (79%), Gaps = 7/124 (5%)
Query: 169 TGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPK 228
TGDEFYLMED +LVCK DYE AK ++ KRPRTTITAKQLETLK AYN SPK
Sbjct: 394 TGDEFYLMEDSRLVCKGDYETAKQREAEST-----AKRPRTTITAKQLETLKNAYNNSPK 448
Query: 229 PARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKD 286
PARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK GTS D
Sbjct: 449 PARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGTSKSD 508
Query: 287 ELKI 290
+ I
Sbjct: 509 KDSI 512
>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
Length = 448
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/235 (68%), Positives = 184/235 (78%), Gaps = 9/235 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P IP C GC ILDRF+LK L+R WH++CLKC +C PLAE+CF+R ++CK+DF
Sbjct: 74 LPQEEIPLCAGCDQHILDRFVLKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDF 133
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK
Sbjct: 134 FKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 193
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLD
Sbjct: 194 ADYETAKQREAEAT-----AKRPRTTITAKQLETLKSAYNASPKPARHVREQLSSETGLD 248
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
MRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 249 MRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSVQEGQDSD 303
>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
Length = 401
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHIPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSD 255
>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
harrisii]
Length = 403
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/210 (74%), Positives = 175/210 (83%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C PLAEKCF+R ++CKEDFFKRFG
Sbjct: 33 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAEKCFSRGDGVYCKEDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CF+CV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + + KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQR-----EAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 237
>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
domestica]
Length = 403
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/210 (74%), Positives = 175/210 (83%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C PLAEKCF+R ++CKEDFFKRFG
Sbjct: 33 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAEKCFSRGDGVYCKEDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CF+CV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + + KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQR-----EAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 237
>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
Length = 400
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSD 255
>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
domestica]
Length = 401
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/210 (74%), Positives = 174/210 (82%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C PLAEKCF+R ++CKEDFFKRFG
Sbjct: 31 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAEKCFSRGDGVYCKEDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CF+CV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEST-----AKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 235
>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
harrisii]
Length = 401
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/210 (74%), Positives = 174/210 (82%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C PLAEKCF+R ++CKEDFFKRFG
Sbjct: 31 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAEKCFSRGDGVYCKEDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CF+CV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEST-----AKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 235
>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
Length = 400
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRRESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK S KD ++ DS+
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSD 255
>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
Length = 402
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/210 (74%), Positives = 175/210 (83%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 237
>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
bp 259 .. 414; amino acid feature: homeodomain, bp 457
.. 636 [Gallus gallus]
Length = 395
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/223 (72%), Positives = 180/223 (80%), Gaps = 7/223 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C LAEKCF+R ++CKEDFFKRFG
Sbjct: 25 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGVYCKEDFFKRFG 84
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK DYE
Sbjct: 85 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYET 144
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + + KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 145 AKQR-----EAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
VWFQNRRAKEKRLKKDAGR RW QYFR+MK GTS D+ I
Sbjct: 200 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGTSKSDKDSI 242
>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
Length = 370
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C G ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 1 IPLCAGRDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 60
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 61 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 120
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 121 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 175
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 176 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 225
>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
Length = 403
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/241 (68%), Positives = 187/241 (77%), Gaps = 12/241 (4%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCTDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK---IDLDSNFSHSHGK 302
VWFQNRRAKEKRLKKDAGR RW YFRSMK G S KD ++ D D++ S +
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGPYFRSMKRARGGPKSDKDSVQEEGQDSDADVSFTDEP 267
Query: 303 T 303
T
Sbjct: 268 T 268
>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
Length = 400
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 157/210 (74%), Positives = 175/210 (83%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 235
>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
Length = 379
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 160/230 (69%), Positives = 183/230 (79%), Gaps = 7/230 (3%)
Query: 63 VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKE 122
V + IP C GC I+DRFILKVL+R WH++CLKC +C + LA+KCF+R ++CKE
Sbjct: 2 VILSSTEIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKE 61
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
DFFKRFGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDE+YLMED +LV
Sbjct: 62 DFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLV 121
Query: 183 CKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
CK DYE AK + + D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TG
Sbjct: 122 CKADYETAKQR-----EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETG 176
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
LDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G+S D+ I
Sbjct: 177 LDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSI 226
>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
Length = 400
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/252 (65%), Positives = 189/252 (75%), Gaps = 16/252 (6%)
Query: 41 HAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKC 100
H GSS + +F+ Y IP C GC I+DRFILKVL+R WH++CLKC
Sbjct: 5 HPGSSCQNTGNFSR---------YNSGQEIPMCAGCNQHIVDRFILKVLDRHWHSKCLKC 55
Query: 101 HECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
+C A LA+KCF R ++CK+DFFKRFGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC
Sbjct: 56 SDCQAQLADKCFTRGDSVYCKDDFFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFAC 115
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLK 220
++C RQL TGDE+YLMED +LVCK DYE AK + + D KRPRTTITAKQLETLK
Sbjct: 116 IVCKRQLATGDEYYLMEDSRLVCKADYETAKQR-----EADSTAKRPRTTITAKQLETLK 170
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK- 279
AYN SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 171 NAYNNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKR 230
Query: 280 -GGTSPKDELKI 290
G+S D+ I
Sbjct: 231 SRGSSKSDKDSI 242
>gi|120537751|gb|AAI29375.1| Lhx4 protein [Danio rerio]
Length = 244
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 180/215 (83%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH++CLKC +C A LA+KCF+R G ++CKEDF
Sbjct: 23 VPLQQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCHALLADKCFSRAGNVYCKEDF 82
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKCA C+ GIPPTQVVR+AQD VYHL+CFACVMC+RQL TGDEFYLMED +LVCK
Sbjct: 83 FKRFGTKCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCK 142
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 143 EDYETAKQND----DSETGAKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLD 198
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 199 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 233
>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
Length = 398
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 159/226 (70%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 64 YMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKED 123
Y IP C GC I+DRFILKVL+R WH++CLKC +C + LA+KCF+R ++CK+D
Sbjct: 19 YSSSQDIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKDD 78
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
FFKRFGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDE+YLMED +LVC
Sbjct: 79 FFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVC 138
Query: 184 KPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
K DYE AK + + D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGL
Sbjct: 139 KADYETAKQR-----EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTETGL 193
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDE 287
DMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK GTS D+
Sbjct: 194 DMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGTSKSDK 239
>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
Length = 395
Score = 336 bits (861), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 159/223 (71%), Positives = 181/223 (81%), Gaps = 7/223 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C + LA+KCF+R ++CKEDFFKRFG
Sbjct: 25 IPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKEDFFKRFG 84
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDE+YLMED +LVCK DYE
Sbjct: 85 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYET 144
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 145 AKQR-----EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G+S D+ I
Sbjct: 200 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSI 242
>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
Length = 398
Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 155/216 (71%), Positives = 176/216 (81%), Gaps = 5/216 (2%)
Query: 64 YMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKED 123
Y IP C GC I+DRFILKVL+R WH++CLKC +C + LA+KCF+R ++CK+D
Sbjct: 19 YSSSQDIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKDD 78
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
FFKRFGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDE+YLMED +LVC
Sbjct: 79 FFKRFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVC 138
Query: 184 KPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
K DYE AK + + D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGL
Sbjct: 139 KADYETAKQR-----EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTETGL 193
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
DMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 194 DMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 229
>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
Length = 395
Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 155/216 (71%), Positives = 177/216 (81%), Gaps = 5/216 (2%)
Query: 64 YMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKED 123
Y IP+C GC I+DRFILKVL+R WH++CLKC++C LAEKCF+R ++CK+D
Sbjct: 19 YTGSPEIPQCAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAEKCFSRGDSVYCKDD 78
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
FFKRFGTKCA C+ GIPPTQVVRRAQ+ VYHL+CFAC++C RQL TGDEFYLMED +LVC
Sbjct: 79 FFKRFGTKCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVC 138
Query: 184 KPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
K DYE AK + + + KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGL
Sbjct: 139 KADYETAKQR-----EAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGL 193
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
DMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 194 DMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 229
>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
Length = 403
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 154/210 (73%), Positives = 174/210 (82%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++C+EDFF+RFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCREDFFRRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR++K
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNLK 237
>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
Length = 401
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 154/210 (73%), Positives = 174/210 (82%), Gaps = 5/210 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++C+EDFF+RFG
Sbjct: 31 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCREDFFRRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW QYFR++K
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNLK 235
>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
Length = 401
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/224 (70%), Positives = 179/224 (79%), Gaps = 9/224 (4%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
P+ GC ILDRF LK L R WH++CLKC +C APLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 TPRWAGCAQPILDRFTLKALGRHWHSKCLKCSDCHAPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 151 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK 289
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++
Sbjct: 206 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRARGGSKSDKDSVQ 249
>gi|321464128|gb|EFX75138.1| hypothetical protein DAPPUDRAFT_323670 [Daphnia pulex]
Length = 278
Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 157/213 (73%), Positives = 174/213 (81%), Gaps = 2/213 (0%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+IP+C GC ILDRFILKVL+R WH CLKC +CG L +KCF R G +CKEDFF+R
Sbjct: 36 ATIPRCAGCSGFILDRFILKVLDRPWHTECLKCMDCGTHLVDKCFVRGGSTYCKEDFFRR 95
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKCA C+ GI P+Q+VRRAQ VYHL CF CV+C RQL+TGDEFYLMEDRKLVCK DY
Sbjct: 96 FGTKCACCDQGIAPSQIVRRAQHHVYHLECFQCVLCGRQLDTGDEFYLMEDRKLVCKADY 155
Query: 188 EAAKAKDGNC--LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
E+AK K + L+G+ P KRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGLDM
Sbjct: 156 ESAKTKGSHFLELEGENPPKRPRTTITAKQLETLKSAYNASPKPARHVREQLSQDTGLDM 215
Query: 246 RVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSM 278
RVVQVWFQNRRAKEKRLKKDAGR RW RS+
Sbjct: 216 RVVQVWFQNRRAKEKRLKKDAGRARWETINRSV 248
>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
Length = 374
Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 157/220 (71%), Positives = 179/220 (81%), Gaps = 7/220 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C + LA+KCF+R ++CK+DFFKRFG
Sbjct: 1 IPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKDDFFKRFG 60
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+C AC++C RQL TGDE+YLMED +LVCK DYE
Sbjct: 61 TKCAACQQGIPPTQVVRRAQDFVYHLHCNACIVCKRQLATGDEYYLMEDSRLVCKADYET 120
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 121 AKQR-----EADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTETGLDMRVVQ 175
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDE 287
VWFQNRRAKEKRLKKDAGR RW QYFR+MK GTS D+
Sbjct: 176 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGTSKSDK 215
>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
Length = 390
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
boliviensis]
Length = 390
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
Length = 390
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
Length = 390
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/226 (69%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
Length = 389
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 21 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 80
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 81 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 140
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 141 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 196
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 197 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 242
>gi|327270281|ref|XP_003219918.1| PREDICTED: LIM/homeobox protein Lhx4-like [Anolis carolinensis]
Length = 449
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 152/217 (70%), Positives = 177/217 (81%), Gaps = 4/217 (1%)
Query: 63 VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKE 122
+++P+ IP+C GC ILD+FILKVL+R WH CLKC +C LA++CF+R G ++CKE
Sbjct: 79 LFLPLPEIPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLADRCFSRAGSVYCKE 138
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
DFFKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LV
Sbjct: 139 DFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLV 198
Query: 183 CKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
CK DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TG
Sbjct: 199 CKEDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETG 254
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
LDMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 255 LDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 291
>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
Length = 374
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 154/214 (71%), Positives = 175/214 (81%), Gaps = 4/214 (1%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P IP+C GC ILD+FILKVL+R WH+ CLKC +C LAE+CFAR G ++CKEDFF
Sbjct: 9 PYRQIPQCAGCSQHILDKFILKVLDRHWHSSCLKCADCQMQLAERCFARAGSVYCKEDFF 68
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
KRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C+RQL TGDEFYLMED +LVCK
Sbjct: 69 KRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKE 128
Query: 186 DYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDM
Sbjct: 129 DYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDM 184
Query: 246 RVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
RVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 185 RVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 218
>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
familiaris]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 176/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G +CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSFYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C+RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 176/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 176/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
Length = 390
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
Length = 390
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
Length = 390
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
Length = 390
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 176/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
Length = 390
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 176/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
Length = 390
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
Length = 390
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 176/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
Length = 390
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 181/226 (80%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CF+CV+C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
Length = 466
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 176/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 98 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 157
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 158 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 217
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 218 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 273
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 274 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 308
>gi|335295820|ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa]
Length = 390
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 175/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|118343872|ref|NP_001071755.1| LIM/homeobox protein Lhx3a type 1 [Ciona intestinalis]
gi|70570105|dbj|BAE06537.1| transcription factor protein [Ciona intestinalis]
Length = 596
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 152/217 (70%), Positives = 175/217 (80%), Gaps = 3/217 (1%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A IPKC GC I DR+ILKV ++ WH++CLKC++CG L +KCF+R ++CKEDFFKR
Sbjct: 190 AKIPKCTGCDHHIFDRYILKVQDKPWHSQCLKCNDCGRQLTDKCFSRGSYVYCKEDFFKR 249
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKC+GCE+ IPPTQVVRRAQD VYHL CF C MC+ QL TGD+FYL++D +LVCK DY
Sbjct: 250 FGTKCSGCELAIPPTQVVRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDY 309
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
E AK++D LD D KRPRTTITAKQLETLK+AYN SPKPARHVREQLS DTGLDMRV
Sbjct: 310 EHAKSRD---LDMDNGIKRPRTTITAKQLETLKIAYNQSPKPARHVREQLSSDTGLDMRV 366
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSP 284
VQVWFQNRRAKEKRLKKD GR RW + FRS + P
Sbjct: 367 VQVWFQNRRAKEKRLKKDTGRQRWGELFRSGAPSSGP 403
>gi|354475897|ref|XP_003500163.1| PREDICTED: LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 390
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 151/215 (70%), Positives = 175/215 (81%), Gaps = 4/215 (1%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C L ++CF+R G ++CKEDF
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLVDRCFSRAGSVYCKEDF 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 FKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 232
>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
guttata]
Length = 412
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 153/212 (72%), Positives = 175/212 (82%), Gaps = 4/212 (1%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A IP+C GC ILD+FILKVL+R WH+ CLKC +C LAE+CF+R G ++CKEDFFKR
Sbjct: 42 AEIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAERCFSRAGSVYCKEDFFKR 101
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C+RQL TGDEFYLMED +LVCK DY
Sbjct: 102 FGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDY 161
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
E AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRV
Sbjct: 162 ETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRV 217
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 218 VQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 249
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 120/156 (76%), Gaps = 7/156 (4%)
Query: 108 AEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQL 167
AE+C + +L + F RFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C+RQL
Sbjct: 263 AEECGVSDSVLSFRA--FLRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQL 320
Query: 168 NTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSP 227
TGDEFYLMED +LVCK DYE AK D D + KRPRTTITAKQLETLK AY SP
Sbjct: 321 ATGDEFYLMEDGRLVCKEDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSP 376
Query: 228 KPARHVREQLSQDTGLDMRVVQVW-FQNRRAKEKRL 262
KPARHVREQLS +TGLDMRVVQVW Q +R K+KR+
Sbjct: 377 KPARHVREQLSSETGLDMRVVQVWRLQKQREKKKRI 412
>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
[Meleagris gallopavo]
Length = 384
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 153/212 (72%), Positives = 174/212 (82%), Gaps = 4/212 (1%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
IP+C GC ILD+FILKVL+R WH+ CLKC +C LAE+CFAR G ++CKEDFFKR
Sbjct: 22 GEIPQCAGCSQHILDKFILKVLDRHWHSSCLKCADCQMQLAERCFARAGSVYCKEDFFKR 81
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C+RQL TGDEFYLMED +LVCK DY
Sbjct: 82 FGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDY 141
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
E AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRV
Sbjct: 142 ETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRV 197
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 198 VQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 229
>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
Length = 390
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 160/239 (66%), Positives = 182/239 (76%), Gaps = 15/239 (6%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFF
Sbjct: 13 PAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFF 72
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+RFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK
Sbjct: 73 RRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKA 132
Query: 186 DYEAAKAKDGNCLDGDQPNKRP-----RTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
DYE AK + G +RP ITAKQLETLK AYNTSPKPARHVREQLS +
Sbjct: 133 DYETAKQR------GQPRGRRPXXXXXXXXITAKQLETLKSAYNTSPKPARHVREQLSSE 186
Query: 241 TGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 187 TGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 245
>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 376
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 156/227 (68%), Positives = 182/227 (80%), Gaps = 8/227 (3%)
Query: 65 MPIAS-IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKED 123
+P+ S IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKED
Sbjct: 7 LPLTSEIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKED 66
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
FFKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVC
Sbjct: 67 FFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVC 126
Query: 184 KPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
K DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGL
Sbjct: 127 KEDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGL 182
Query: 244 DMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
DMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 183 DMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 229
>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
Length = 367
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/224 (68%), Positives = 179/224 (79%), Gaps = 7/224 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFK
Sbjct: 1 MQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK 60
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK D
Sbjct: 61 RFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 120
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMR
Sbjct: 121 YETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMR 176
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
VVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 177 VVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 220
>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
Length = 367
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 151/213 (70%), Positives = 174/213 (81%), Gaps = 4/213 (1%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFK
Sbjct: 1 MQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK 60
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK D
Sbjct: 61 RFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 120
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMR
Sbjct: 121 YETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMR 176
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 177 VVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 209
>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
Length = 364
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 154/221 (69%), Positives = 178/221 (80%), Gaps = 7/221 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFKRFG
Sbjct: 1 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFG 60
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK DYE
Sbjct: 61 TKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYET 120
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 121 AKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 176
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
VWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 177 VWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 217
>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
purpuratus]
Length = 545
Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 151/211 (71%), Positives = 177/211 (83%), Gaps = 3/211 (1%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
SI C GC ILDRFILKV++R WHA+CL+C +C A L ++CF+R+G +FCKEDFFKRF
Sbjct: 143 SISLCAGCDHPILDRFILKVVDRAWHAKCLRCVDCNAQLTDRCFSRDGGVFCKEDFFKRF 202
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
GTKC+ CE GI PT++VRRA D VYHL+CF C++C RQL+TGDEF+LM D KLVCK DYE
Sbjct: 203 GTKCSSCEKGIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYE 262
Query: 189 AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVV 248
AAKA++ L+ D NKRPRTTITAKQLETLK AY+ SPKPARHVREQL+Q+TGLDMRVV
Sbjct: 263 AAKARE---LEMDNSNKRPRTTITAKQLETLKTAYSNSPKPARHVREQLAQETGLDMRVV 319
Query: 249 QVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
QVWFQNRRAKEKRLKKDA R RW YFR++K
Sbjct: 320 QVWFQNRRAKEKRLKKDANRQRWGHYFRNIK 350
>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
Length = 365
Score = 326 bits (836), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 154/221 (69%), Positives = 178/221 (80%), Gaps = 7/221 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFKRFG
Sbjct: 2 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC C+ GIPPTQVVR+AQD VYHL+CF+CV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 62 TKCTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCKEDYET 121
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 122 AKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 177
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
VWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 178 VWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 218
>gi|334321803|ref|XP_001374523.2| PREDICTED: LIM/homeobox protein Lhx4-like [Monodelphis domestica]
Length = 391
Score = 326 bits (836), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 154/223 (69%), Positives = 178/223 (79%), Gaps = 7/223 (3%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
+ IP+C GC ILD+FILKVL+R WH CLKC +C LA++CF+R G ++CKEDFFKR
Sbjct: 26 SEIPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLADRCFSRAGSVYCKEDFFKR 85
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK DY
Sbjct: 86 FGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY 145
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
E AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRV
Sbjct: 146 ETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRV 201
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
VQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 202 VQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRNRGGSKHEKE 244
>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
Length = 377
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/238 (66%), Positives = 182/238 (76%), Gaps = 15/238 (6%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+ IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFF+
Sbjct: 1 MQQIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFR 60
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK D
Sbjct: 61 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 120
Query: 187 YEAAKAKDGNCLDGDQPNKRP-----RTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
YE AK + G +RP ITAKQLETLK AYNTSPKPARHVREQLS +T
Sbjct: 121 YETAKQR------GQPRGRRPXXXXXXXXITAKQLETLKSAYNTSPKPARHVREQLSSET 174
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
GLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 175 GLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 232
>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
Length = 236
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 151/210 (71%), Positives = 174/210 (82%), Gaps = 4/210 (1%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFKRFG
Sbjct: 2 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC C+ GIPPTQVVR+AQD VYHL+CFAC++C+RQL TGDEFYLMED +LVCK DYE
Sbjct: 62 TKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYET 121
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 122 AKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 177
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 178 VWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 207
>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
tropicalis]
Length = 385
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/237 (65%), Positives = 183/237 (77%), Gaps = 9/237 (3%)
Query: 43 GSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHE 102
G S++ + +G MP IP+C GC + ILD+FILKVL+R WH+ CLKC E
Sbjct: 14 GPSTACDLLYERSSRQGAMP-----KEIPRCSGCNEHILDKFILKVLDRHWHSACLKCCE 68
Query: 103 CGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
C PLAE+CF R G ++CKEDFFK FGTKC C+ GIPPTQVVR+AQD VYHL+CF+C++
Sbjct: 69 CQVPLAERCFYRAGNVYCKEDFFKCFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFSCII 128
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMA 222
C+RQL TGDEFYLMED +LVCK DYE AK D D + KRPRTTITAKQLETLK A
Sbjct: 129 CSRQLATGDEFYLMEDGRLVCKEDYETAKQND----DSEGGAKRPRTTITAKQLETLKNA 184
Query: 223 YNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
Y SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S++
Sbjct: 185 YKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQFYKSVR 241
>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
Length = 401
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/235 (67%), Positives = 181/235 (77%), Gaps = 15/235 (6%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFF+RFG
Sbjct: 28 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFRRFG 87
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 88 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 190 AKAKDGNCLDGDQPNKRP-----RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
AK + G +RP ITAKQLETLK AYNTSPKPARHVREQLS +TGLD
Sbjct: 148 AKQR------GQPRGRRPXXXXXXXXITAKQLETLKSAYNTSPKPARHVREQLSSETGLD 201
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
MRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 202 MRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 256
>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
Length = 485
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 151/211 (71%), Positives = 177/211 (83%), Gaps = 3/211 (1%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
SI C GC ILDRFILKV++R WHA+CL+C +C A L ++CF+R+G +FCKEDFFKRF
Sbjct: 83 SISLCAGCDHPILDRFILKVVDRAWHAKCLRCVDCNAQLTDRCFSRDGGVFCKEDFFKRF 142
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
GTKC+ CE GI PT++VRRA D VYHL+CF C++C RQL+TGDEF+LM D KLVCK DYE
Sbjct: 143 GTKCSSCEKGIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYE 202
Query: 189 AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVV 248
AAKA++ L+ D NKRPRTTITAKQLETLK AY+ SPKPARHVREQL+Q+TGLDMRVV
Sbjct: 203 AAKARE---LEMDNSNKRPRTTITAKQLETLKTAYSNSPKPARHVREQLAQETGLDMRVV 259
Query: 249 QVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
QVWFQNRRAKEKRLKKDA R RW YFR++K
Sbjct: 260 QVWFQNRRAKEKRLKKDANRQRWGHYFRNIK 290
>gi|171544941|ref|NP_001116387.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
gi|157410515|gb|ABV53980.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
Length = 401
Score = 323 bits (827), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 159/226 (70%), Positives = 179/226 (79%), Gaps = 10/226 (4%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A IP C GC I+DRFILKVL+R WH +CLKC +C A LAEKCF+R ++CK+DFFKR
Sbjct: 25 AEIPVCAGCNQHIVDRFILKVLDRHWHGKCLKCSDCQAQLAEKCFSRGDSVYCKDDFFKR 84
Query: 128 -FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDE+YLMED +LVCK D
Sbjct: 85 RFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTD 144
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE AK ++ D KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMR
Sbjct: 145 YETAKQREA-----DSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMR 199
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
VVQV QNRRAKEKRLKKDAGR RW QYFR+MK G+S D+ I
Sbjct: 200 VVQV--QNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSI 243
>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
mulatta]
Length = 390
Score = 322 bits (826), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 152/226 (67%), Positives = 179/226 (79%), Gaps = 7/226 (3%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
+P+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKED
Sbjct: 22 VPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDP 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+RFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK
Sbjct: 82 DRRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
DYE AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLD
Sbjct: 142 EDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLD 197
Query: 245 MRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
MRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 198 MRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 243
>gi|15706308|dbj|BAB68342.1| Cs-LHX3 [Ciona savignyi]
Length = 472
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 151/230 (65%), Positives = 177/230 (76%), Gaps = 6/230 (2%)
Query: 56 DYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARN 115
D+ I+ V + IPKC GC I DRFILKV ++ WHA+CLKC +CG L +KCF+R
Sbjct: 64 DFTDILSV---LTKIPKCTGCAQHIFDRFILKVQDKPWHAQCLKCGDCGRQLTDKCFSRG 120
Query: 116 GLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL 175
++CKEDFFKR+GTKCAGC+ IPPT+VVRRAQ+ VYHL CF C MC QL TGD+FYL
Sbjct: 121 SFVYCKEDFFKRYGTKCAGCDEAIPPTEVVRRAQENVYHLECFRCFMCNDQLGTGDQFYL 180
Query: 176 MEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVRE 235
++D +LVCK DYE AK++D +D D KRPRTTITAKQLETLK+AYN SPKPARHVRE
Sbjct: 181 LDDNRLVCKKDYETAKSRD---IDMDNGIKRPRTTITAKQLETLKLAYNQSPKPARHVRE 237
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPK 285
QLS DTGLDMRVVQVWFQNRRAKEKRLKKD R RW + FRS + P+
Sbjct: 238 QLSSDTGLDMRVVQVWFQNRRAKEKRLKKDTSRQRWGEIFRSGAPSSGPQ 287
>gi|237512911|dbj|BAA07578.2| LIM homeodomain protein Hr-Lhx3 a-form [Halocynthia roretzi]
Length = 690
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 146/220 (66%), Positives = 173/220 (78%), Gaps = 6/220 (2%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A IPKC GC I DRFILKV ++ WH++CLKC++C A L+EKCF+R L+FCK+DFFKR
Sbjct: 277 AEIPKCTGCEHRIFDRFILKVQDKPWHSQCLKCNDCSAQLSEKCFSRGNLVFCKDDFFKR 336
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKC C GIPPT+V+RRAQD VYHL CF C +C ++ TGD+FYL+ED +LVCK DY
Sbjct: 337 FGTKCTACGHGIPPTEVIRRAQDNVYHLECFCCFLCHEKMGTGDQFYLLEDNRLVCKKDY 396
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
E AK++D + +G KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRV
Sbjct: 397 EQAKSRDADIENGV---KRPRTTITAKQLETLKSAYNQSPKPARHVREQLSSETGLDMRV 453
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSP 284
VQVWFQNRRAKEKR+K+D GR RW +F + G TSP
Sbjct: 454 VQVWFQNRRAKEKRIKRDTGRQRWGHFFSRNQLPSGPTSP 493
>gi|344254045|gb|EGW10149.1| LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 397
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/238 (63%), Positives = 174/238 (73%), Gaps = 27/238 (11%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+ IP+C GC ILD+FILKVL+R WH+ CLKC +C L ++CF+R G ++CKEDFFK
Sbjct: 4 LPEIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLVDRCFSRAGSVYCKEDFFK 63
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK D
Sbjct: 64 RFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 123
Query: 187 YEAAKAKDGNCL-------------------------DGDQPNKRPRTTITAKQLETLKM 221
YE AK CL D + KRPRTTITAKQLETLK
Sbjct: 124 YETAKQN--GCLGWGRRQRKPSCFSWANSIKVVFTVDDSEAGAKRPRTTITAKQLETLKN 181
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
AY SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 182 AYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVK 239
>gi|9971753|gb|AAG10399.1| lim-homeobox transcription factor LHX3 [Homo sapiens]
Length = 397
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 173/230 (75%), Gaps = 9/230 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK T A PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKARTATGTASVSSAATATTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGD+FYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDDFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQ
Sbjct: 153 AKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
VWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 208 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 257
>gi|236201759|dbj|BAH58772.1| LIM homeodomain protein Hr-Lhx3 b-form [Halocynthia roretzi]
Length = 611
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 154/273 (56%), Positives = 195/273 (71%), Gaps = 11/273 (4%)
Query: 17 AVQRGNGLTVGICASKLHDLL-HEAHAGSSSSFSSSFNDVD-YEGIMPVYMPIASIPKCG 74
+++R N L ++ D++ E + + ++ N++D Y IM V + IPKC
Sbjct: 146 SIERENFLPPTRDVPEIFDIIWSENPTRGNDTVNAKSNEIDDYSDIMKV---LTEIPKCT 202
Query: 75 GCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAG 134
GC I DRFILKV ++ WH++ LKC++C A L+EKCF+R L+FCK+DFFKRFGTKC
Sbjct: 203 GCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSEKCFSRGNLVFCKDDFFKRFGTKCTA 262
Query: 135 CEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194
C GIPPT+V+RRAQD VYHL F C +C ++ TGD+FYL+ED +LVCK DYE AK++D
Sbjct: 263 CGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEKMGTGDQFYLLEDNRLVCKKDYEQAKSRD 322
Query: 195 GNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
+ +G KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQVWFQN
Sbjct: 323 ADIENG---VKRPRTTITAKQLETLKSAYNQSPKPARHVREQLSSETGLDMRVVQVWFQN 379
Query: 255 RRAKEKRLKKDAGRTRWSQYFRSMK---GGTSP 284
RRAKEKR+K+D GR RW +F + G TSP
Sbjct: 380 RRAKEKRIKRDTGRQRWGHFFSRNQLPSGPTSP 412
>gi|306526228|sp|Q25132.2|LHX3_HALRO RecName: Full=LIM/homeobox protein Lhx3; Short=Hr-Lhx3; Short=LIM
homeobox protein 3; AltName: Full=LIM/homeobox protein
LIM; Short=HrLIM
Length = 692
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/220 (65%), Positives = 171/220 (77%), Gaps = 6/220 (2%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A IPKC GC I DRFILKV ++ WH++ LKC++C A L+EKCF+R L+FCK+DFFKR
Sbjct: 277 AEIPKCTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSEKCFSRGNLVFCKDDFFKR 336
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKC C GIPPT+V+RRAQD VYHL F C +C ++ TGD+FYL+ED +LVCK DY
Sbjct: 337 FGTKCTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEKMGTGDQFYLLEDNRLVCKKDY 396
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
E AK++D + +G KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRV
Sbjct: 397 EQAKSRDADIENGV---KRPRTTITAKQLETLKSAYNQSPKPARHVREQLSSETGLDMRV 453
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSP 284
VQVWFQNRRAKEKR+K+D GR RW +F + G TSP
Sbjct: 454 VQVWFQNRRAKEKRIKRDTGRQRWGHFFSRNQLPSGPTSP 493
>gi|18308156|gb|AAL67847.1|AF461699_1 LIM homeobox protein [Gallus gallus]
Length = 214
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/195 (73%), Positives = 161/195 (82%), Gaps = 5/195 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C LAEKCF+R ++CKEDFFKRFG
Sbjct: 25 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGVYCKEDFFKRFG 84
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C+ GIPPTQVVRRAQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK DYE
Sbjct: 85 TKCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYET 144
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + + KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 145 AKQR-----EAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
Query: 250 VWFQNRRAKEKRLKK 264
VWFQNRRAKEKRLKK
Sbjct: 200 VWFQNRRAKEKRLKK 214
>gi|371573886|gb|AEX38313.1| Lhx3 [Mnemiopsis leidyi]
Length = 507
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 136/221 (61%), Positives = 170/221 (76%), Gaps = 9/221 (4%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A +P+C GC I DRFILKV+E+ WH+ CLKCH+C A L +KCF+R ++CK+DF+KR
Sbjct: 121 AVVPRCAGCDQPITDRFILKVMEKNWHSACLKCHDCLAQLTDKCFSRGDFVYCKDDFYKR 180
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+GTKCA CE IPP+QVVRRA V+H++CF C++C+R LNTGDEFY ++D +LVC+ DY
Sbjct: 181 YGTKCAKCEKVIPPSQVVRRAGGHVFHMDCFVCIICSRTLNTGDEFYFVDDNQLVCRSDY 240
Query: 188 EAAKAKDGNCLD---------GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
+ K + NC D +Q KRPRTTITAKQLETLK AY SPKPARHVREQLS
Sbjct: 241 DNFKTQYANCTDETFTDELDLENQGIKRPRTTITAKQLETLKTAYENSPKPARHVREQLS 300
Query: 239 QDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
+TGLDMRVVQVWFQNRRAKEKR+KK+A R RW QY ++++
Sbjct: 301 SETGLDMRVVQVWFQNRRAKEKRMKKEAPRNRWGQYLKNLR 341
>gi|2149584|gb|AAC53336.1| LIM-homeobox protein [Mus musculus]
Length = 190
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/194 (73%), Positives = 159/194 (81%), Gaps = 4/194 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFKRFGTKC
Sbjct: 1 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKC 60
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK DYE AK
Sbjct: 61 TACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQ 120
Query: 193 KDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWF 252
D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQVWF
Sbjct: 121 ND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWF 176
Query: 253 QNRRAKEKRLKKDA 266
QNRRAKEKRLKKDA
Sbjct: 177 QNRRAKEKRLKKDA 190
>gi|441636332|ref|XP_003259172.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4 [Nomascus
leucogenys]
Length = 415
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/221 (64%), Positives = 164/221 (74%), Gaps = 25/221 (11%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFKRFG
Sbjct: 71 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFG 130
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFY D EA
Sbjct: 131 TKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYXX---------DSEA 181
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 182 GA-------------KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 228
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTSPKDE 287
VWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+ + E
Sbjct: 229 VWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSKQEKE 269
>gi|167859587|gb|ACA04748.1| Lim3 [Amphimedon queenslandica]
Length = 338
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/199 (66%), Positives = 162/199 (81%), Gaps = 6/199 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
IA +P C GC I DRFIL+V +++WHA+CL+C +C L++KC++R+G ++CK+DF K
Sbjct: 87 IAHVPFCAGCNTRIFDRFILRVQDKSWHAKCLRCSDCQCQLSDKCYSRSGQVYCKDDFSK 146
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGT+CAGC+ IPPTQVVRRAQ+ VYHL CFAC +C RQL+TGDEFYLM+DRKLVCK D
Sbjct: 147 RFGTRCAGCQQPIPPTQVVRRAQENVYHLQCFACFICQRQLSTGDEFYLMDDRKLVCKAD 206
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YEAAKA+ DG Q KRPRTTI+ KQL+ LK AY SPKP+RHVR++LS TGLDMR
Sbjct: 207 YEAAKAR----ADGSQ--KRPRTTISQKQLDLLKTAYCVSPKPSRHVRQELSDKTGLDMR 260
Query: 247 VVQVWFQNRRAKEKRLKKD 265
VVQVWFQN+RAK+KR KKD
Sbjct: 261 VVQVWFQNKRAKDKRTKKD 279
>gi|358333778|dbj|GAA52242.1| LIM homeobox protein 3/4, partial [Clonorchis sinensis]
Length = 405
Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 133/187 (71%), Positives = 154/187 (82%), Gaps = 3/187 (1%)
Query: 86 LKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVV 145
++VL + WH+ CLKC +CGA L++KCF R ++CK DFF+RFGTKCAGCE GIPPT+VV
Sbjct: 1 MRVLNQHWHSNCLKCMDCGASLSDKCFMRMDEVYCKNDFFRRFGTKCAGCERGIPPTEVV 60
Query: 146 RRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNK 205
R AQD VYH++CFACV+C R LNTGDEFYL+ DRKL+CK D+E AKA++ D NK
Sbjct: 61 RTAQDNVYHMDCFACVICDRLLNTGDEFYLLRDRKLMCKYDFETAKARESEL---DSANK 117
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265
RPRTTITAKQLE LK AYN SPKP RHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKD
Sbjct: 118 RPRTTITAKQLEALKRAYNESPKPVRHVREQLSAETGLDMRVVQVWFQNRRAKEKRLKKD 177
Query: 266 AGRTRWS 272
AGR W+
Sbjct: 178 AGRHMWA 184
>gi|340376253|ref|XP_003386648.1| PREDICTED: LIM/homeobox protein Lhx3-like [Amphimedon
queenslandica]
Length = 338
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 129/193 (66%), Positives = 158/193 (81%), Gaps = 6/193 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRFIL+V +++WHA+CL+C +C L++KC++R+G ++CK+DF KRFGT+C
Sbjct: 93 CAGCNTRIFDRFILRVQDKSWHAKCLRCSDCQCQLSDKCYSRSGQVYCKDDFSKRFGTRC 152
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC+ IPPTQVVRRAQ+ VYHL CFAC +C RQL+TGDEFYLM+DRKLVCK DYEAAKA
Sbjct: 153 AGCQQPIPPTQVVRRAQENVYHLQCFACFICQRQLSTGDEFYLMDDRKLVCKADYEAAKA 212
Query: 193 KDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWF 252
+ DG Q KRPRTTI+ KQL+ LK AY SPKP+RHVR++LS TGLDMRVVQVWF
Sbjct: 213 R----ADGSQ--KRPRTTISQKQLDLLKTAYCVSPKPSRHVRQELSDKTGLDMRVVQVWF 266
Query: 253 QNRRAKEKRLKKD 265
QN+RAK+KR KKD
Sbjct: 267 QNKRAKDKRTKKD 279
>gi|49659006|emb|CAD37944.1| homeobox protein LHX [Suberites domuncula]
Length = 342
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 129/197 (65%), Positives = 159/197 (80%), Gaps = 7/197 (3%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
+IP C GC I+DRFILKVL++ WH++CL+C +C L +KC++R+G +FCK DF +R
Sbjct: 114 GNIPCCAGCHHPIVDRFILKVLDKPWHSKCLRCVDCDMLLTDKCYSRDGEVFCKADFSRR 173
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGT+CAGC IPPTQVVRRAQ+ VYHL CFAC +C+RQL+TGDEFYLM+D+KLVCK DY
Sbjct: 174 FGTRCAGCNQPIPPTQVVRRAQENVYHLQCFACFICSRQLSTGDEFYLMDDKKLVCKADY 233
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
EAA+AKDGN KRPRTTIT+KQL+TLK AY S KP+R VREQL+ +TGL++RV
Sbjct: 234 EAARAKDGN-------QKRPRTTITSKQLDTLKAAYTVSSKPSRAVREQLANETGLEVRV 286
Query: 248 VQVWFQNRRAKEKRLKK 264
VQVWFQNRRAK+KR K
Sbjct: 287 VQVWFQNRRAKDKRTTK 303
>gi|431915961|gb|ELK16215.1| LIM/homeobox protein Lhx4 [Pteropus alecto]
Length = 329
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 132/184 (71%), Positives = 152/184 (82%), Gaps = 7/184 (3%)
Query: 107 LAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQ 166
LA++CF+R G ++CKEDFFKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C+RQ
Sbjct: 3 LADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQ 62
Query: 167 LNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTS 226
L TGDEFYLMED +LVCK DYE AK D D + KRPRTTITAKQLETLK AY S
Sbjct: 63 LATGDEFYLMEDGRLVCKEDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNS 118
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTS 283
PKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+
Sbjct: 119 PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSK 178
Query: 284 PKDE 287
+ E
Sbjct: 179 QEKE 182
>gi|148707455|gb|EDL39402.1| LIM homeobox protein 4, isoform CRA_a [Mus musculus]
Length = 329
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/184 (71%), Positives = 151/184 (82%), Gaps = 7/184 (3%)
Query: 107 LAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQ 166
LA++CF+R G ++CKEDFFKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQ
Sbjct: 3 LADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 62
Query: 167 LNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTS 226
L TGDEFYLMED +LVCK DYE AK D D + KRPRTTITAKQLETLK AY S
Sbjct: 63 LATGDEFYLMEDGRLVCKEDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNS 118
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTS 283
PKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+
Sbjct: 119 PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSK 178
Query: 284 PKDE 287
+ E
Sbjct: 179 QEKE 182
>gi|157820803|ref|NP_001101818.1| LIM/homeobox protein Lhx4 [Rattus norvegicus]
gi|149058350|gb|EDM09507.1| LIM homeobox protein 4 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 329
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/184 (71%), Positives = 151/184 (82%), Gaps = 7/184 (3%)
Query: 107 LAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQ 166
LA++CF+R G ++CKEDFFKRFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQ
Sbjct: 3 LADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 62
Query: 167 LNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTS 226
L TGDEFYLMED +LVCK DYE AK D D + KRPRTTITAKQLETLK AY S
Sbjct: 63 LATGDEFYLMEDGRLVCKEDYETAKQND----DSEAGAKRPRTTITAKQLETLKNAYKNS 118
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK---GGTS 283
PKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K GG+
Sbjct: 119 PKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGGSK 178
Query: 284 PKDE 287
+ E
Sbjct: 179 QEKE 182
>gi|345325463|ref|XP_003430923.1| PREDICTED: hypothetical protein LOC100085508 [Ornithorhynchus
anatinus]
Length = 884
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 144/181 (79%), Gaps = 4/181 (2%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP+C GC ILD+FILKVL+R WH CLKC +C LA++CF+R G ++CKEDFFKRFG
Sbjct: 577 IPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFG 636
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK DYE
Sbjct: 637 TKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYET 696
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK D D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 697 AKQND----DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 752
Query: 250 V 250
Sbjct: 753 T 753
>gi|241999336|ref|XP_002434311.1| lhx3, putative [Ixodes scapularis]
gi|215496070|gb|EEC05711.1| lhx3, putative [Ixodes scapularis]
Length = 252
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/176 (74%), Positives = 143/176 (81%), Gaps = 7/176 (3%)
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+GTKCAGCE+GIPPTQVVRRAQD VYHL+CFAC++C RQLNTGDEFYLMED KLVCK D
Sbjct: 23 RYGTKCAGCELGIPPTQVVRRAQDNVYHLHCFACILCKRQLNTGDEFYLMEDNKLVCKAD 82
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YEAAKA++G+ KRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGLDMR
Sbjct: 83 YEAAKAREGST-------KRPRTTITAKQLETLKSAYNNSPKPARHVREQLSQDTGLDMR 135
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFSHSHGK 302
VVQVWFQNRRAKEKRLKKDAG+TRW +FRS G + D SHS G+
Sbjct: 136 VVQVWFQNRRAKEKRLKKDAGKTRWGDFFRSSSGAKDSEPFGMTGSDPEASHSPGQ 191
>gi|324516282|gb|ADY46481.1| Homeobox protein ceh-14 [Ascaris suum]
Length = 324
Score = 266 bits (680), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 155/203 (76%), Gaps = 5/203 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
CG C + I DR++LKVL+R++H +CL+C C PL KC+ + G FCK+ F+KRFGTKC
Sbjct: 19 CGKCEEPIRDRYLLKVLDRSYHTQCLRCTHCEQPLTSKCYLKGGQPFCKDHFYKRFGTKC 78
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME-DRKLVCKPDYEAAK 191
+ CE GI P VVRRA D VYH+ CF CV+C R+L TG++FYL+ D +LVCK DYE AK
Sbjct: 79 SVCEEGICPDSVVRRANDHVYHVACFQCVICKRELRTGEQFYLIPTDGRLVCKTDYEMAK 138
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
K+ D D NKRPRTTI+AK LETLK AY S KPARHVREQL+ DTGLDMRVVQVW
Sbjct: 139 NKE---TDVDCNNKRPRTTISAKSLETLKQAYQASSKPARHVREQLAADTGLDMRVVQVW 195
Query: 252 FQNRRAKEKRLKKDAGRTRWSQY 274
FQNRRAKEKRLKKDAGR RW+ Y
Sbjct: 196 FQNRRAKEKRLKKDAGR-RWNAY 217
>gi|312075006|ref|XP_003140224.1| hypothetical protein LOAG_04639 [Loa loa]
Length = 325
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 162/220 (73%), Gaps = 8/220 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
CG C + I DRF+LKVL+R++H +CL+C C L+ KC+ + G +CK+ F+KRFGTKC
Sbjct: 17 CGKCEEPIRDRFVLKVLDRSFHPQCLRCVHCEQLLSSKCYLKGGQPYCKDHFYKRFGTKC 76
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
+ C+ GI P VVRRA + VYH++CF C++C R+L TG+EFYL+ D +LVCK DYE AK
Sbjct: 77 SMCDEGICPDMVVRRANEHVYHVSCFQCIICKRELRTGEEFYLIPTDGRLVCKSDYEMAK 136
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
K+ D D KRPRTTI+AK LE LK AY S KPARH+REQL+ DTGLDMRVVQVW
Sbjct: 137 TKE---TDIDSNTKRPRTTISAKSLEILKQAYQASSKPARHIREQLAADTGLDMRVVQVW 193
Query: 252 FQNRRAKEKRLKKDAGRTRWSQY--FRSMKGGT-SPKDEL 288
FQNRRAKEKRLKKDAGR +W Y +S+ G+ SP D +
Sbjct: 194 FQNRRAKEKRLKKDAGR-QWGTYGITKSLDSGSASPNDSI 232
>gi|393912072|gb|EFO23845.2| hypothetical protein LOAG_04639 [Loa loa]
Length = 319
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 162/220 (73%), Gaps = 8/220 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
CG C + I DRF+LKVL+R++H +CL+C C L+ KC+ + G +CK+ F+KRFGTKC
Sbjct: 11 CGKCEEPIRDRFVLKVLDRSFHPQCLRCVHCEQLLSSKCYLKGGQPYCKDHFYKRFGTKC 70
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
+ C+ GI P VVRRA + VYH++CF C++C R+L TG+EFYL+ D +LVCK DYE AK
Sbjct: 71 SMCDEGICPDMVVRRANEHVYHVSCFQCIICKRELRTGEEFYLIPTDGRLVCKSDYEMAK 130
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
K+ D D KRPRTTI+AK LE LK AY S KPARH+REQL+ DTGLDMRVVQVW
Sbjct: 131 TKE---TDIDSNTKRPRTTISAKSLEILKQAYQASSKPARHIREQLAADTGLDMRVVQVW 187
Query: 252 FQNRRAKEKRLKKDAGRTRWSQY--FRSMKGGT-SPKDEL 288
FQNRRAKEKRLKKDAGR +W Y +S+ G+ SP D +
Sbjct: 188 FQNRRAKEKRLKKDAGR-QWGTYGITKSLDSGSASPNDSI 226
>gi|7511466|pir||T34266 LIM homeobox protein ceh-14 - Caenorhabditis elegans
Length = 348
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 151/217 (69%), Gaps = 2/217 (0%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C I DRF+ KV R +H+ CL+C C L CF R ++C+ F+K+FGTKC
Sbjct: 45 CSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKDELGATCFLREDSMYCRAHFYKKFGTKC 104
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
+ C GI P VVR+A + VYH+ CF C +C R L TG+EFYL+ +D +LVCK DYE A+
Sbjct: 105 SSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQAR 164
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
K N L+GD NKRPRTTI+AK LETLK AY TS KPARHVREQL+ +TGLDMRVVQVW
Sbjct: 165 DKHCNELEGDGSNKRPRTTISAKSLETLKQAYQTSSKPARHVREQLASETGLDMRVVQVW 224
Query: 252 FQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDEL 288
FQNRRAKEKRLKKDAGR RW R+ SP + +
Sbjct: 225 FQNRRAKEKRLKKDAGR-RWKSSNRAESDSNSPIESI 260
>gi|17551226|ref|NP_509273.1| Protein CEH-14 [Caenorhabditis elegans]
gi|21264444|sp|P20271.3|HM14_CAEEL RecName: Full=Homeobox protein ceh-14
gi|8572736|gb|AAF77181.1|AF244368_1 LIM homeobox protein CEH-14 [Caenorhabditis elegans]
gi|351063218|emb|CCD71294.1| Protein CEH-14 [Caenorhabditis elegans]
Length = 351
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 151/217 (69%), Gaps = 2/217 (0%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C I DRF+ KV R +H+ CL+C C L CF R ++C+ F+K+FGTKC
Sbjct: 48 CSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKDELGATCFLREDSMYCRAHFYKKFGTKC 107
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
+ C GI P VVR+A + VYH+ CF C +C R L TG+EFYL+ +D +LVCK DYE A+
Sbjct: 108 SSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQAR 167
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
K N L+GD NKRPRTTI+AK LETLK AY TS KPARHVREQL+ +TGLDMRVVQVW
Sbjct: 168 DKHCNELEGDGSNKRPRTTISAKSLETLKQAYQTSSKPARHVREQLASETGLDMRVVQVW 227
Query: 252 FQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDEL 288
FQNRRAKEKRLKKDAGR RW R+ SP + +
Sbjct: 228 FQNRRAKEKRLKKDAGR-RWKSSNRAESDSNSPIESI 263
>gi|327291516|ref|XP_003230467.1| PREDICTED: LIM/homeobox protein Lhx3-like, partial [Anolis
carolinensis]
Length = 314
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/153 (77%), Positives = 129/153 (84%), Gaps = 5/153 (3%)
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCA C+ GIPPTQVVRRAQD VYHL+CF+C++C RQL TGDEFYLMED +LVCK D
Sbjct: 1 RFGTKCAACQQGIPPTQVVRRAQDFVYHLHCFSCIVCKRQLATGDEFYLMEDSRLVCKAD 60
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YE AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMR
Sbjct: 61 YETAKQREAEST-----AKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSSETGLDMR 115
Query: 247 VVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
VVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 116 VVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 148
>gi|391759011|dbj|BAM22649.1| LIM homeobox 3/4, partial [Eptatretus burgeri]
Length = 205
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/182 (64%), Positives = 145/182 (79%), Gaps = 3/182 (1%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A+ P CGGC I DRF+LK LER+WHA CL+C +C +PL+E+CF+R+G L+CKEDFF+R
Sbjct: 27 ATGPVCGGCSLPIGDRFLLKALERSWHASCLRCRDCQSPLSERCFSRDGALYCKEDFFRR 86
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKCAGC GIPP+Q VR+AQ+ V+HL+CFAC +C RQL TGD FYL++D +LVC+ DY
Sbjct: 87 FGTKCAGCRQGIPPSQAVRKAQERVFHLHCFACSLCGRQLATGDLFYLLDDARLVCQHDY 146
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
+D + D KRPRTTITAKQLETLK AY +SPKPARHVREQL+ +TGLDMRV
Sbjct: 147 PGTAHRDS---EVDGAAKRPRTTITAKQLETLKNAYKSSPKPARHVREQLASETGLDMRV 203
Query: 248 VQ 249
VQ
Sbjct: 204 VQ 205
>gi|301611522|ref|XP_002935283.1| PREDICTED: LIM/homeobox protein Lhx3-like [Xenopus (Silurana)
tropicalis]
Length = 362
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 121/164 (73%), Positives = 133/164 (81%), Gaps = 6/164 (3%)
Query: 117 LLFCKEDF-FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL 175
+ FC + RFGTKCA C+ GIPPTQVVRRAQ+ VYHL+CFAC++C RQL TGDEFYL
Sbjct: 38 MPFCSTNMDVWRFGTKCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYL 97
Query: 176 MEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVRE 235
MED +LVCK DYE AK ++ KRPRTTITAKQLETLK AYN SPKPARHVRE
Sbjct: 98 MEDSRLVCKGDYETAKQREAEST-----AKRPRTTITAKQLETLKNAYNNSPKPARHVRE 152
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
QLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK
Sbjct: 153 QLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMK 196
>gi|268580151|ref|XP_002645058.1| C. briggsae CBR-CEH-14 protein [Caenorhabditis briggsae]
Length = 351
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 150/218 (68%), Gaps = 2/218 (0%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C I DRF+ KV R +H+ CL+C C L CF R+ ++C+ FFK+FGTKC
Sbjct: 48 CSLCEKEIRDRFVSKVNGRCYHSSCLRCSTCQDELGATCFLRDDSMYCRAHFFKKFGTKC 107
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
A CE GI P VVR+A +YH+ CF C +C R L TG+EFYL+ +D +LVCK DYE A+
Sbjct: 108 ASCEDGIVPDHVVRKASGHIYHVECFNCFICKRLLETGEEFYLIPDDARLVCKDDYEQAR 167
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
K +GD NKRPRTTI+AK LETLK AY TS KPARH+REQL+ +TGLDMRVVQVW
Sbjct: 168 DKQSAESEGDGGNKRPRTTISAKSLETLKQAYQTSSKPARHIREQLASETGLDMRVVQVW 227
Query: 252 FQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELK 289
FQNRRAKEKRLKKDAGR RW R+ SP + +
Sbjct: 228 FQNRRAKEKRLKKDAGR-RWKSSTRAESDSNSPIESIN 264
>gi|391342697|ref|XP_003745652.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 363
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 159/220 (72%), Gaps = 15/220 (6%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C GC ILDRF+L VL+R+WHA+C++C +C L+EKCF+R+G LFC+ DF+KRFGTK
Sbjct: 5 QCAGCERPILDRFLLHVLDRSWHAKCVQCSDCRCSLSEKCFSRDGKLFCRSDFYKRFGTK 64
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY---- 187
CAGC GI PT +VRRA+ V+HL CF C++C +QL+TG+E Y++++ + +CK DY
Sbjct: 65 CAGCAQGISPTDLVRRARSKVFHLKCFTCLVCRKQLSTGEELYVLDENRFICKEDYLNQR 124
Query: 188 --------EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ A DGN G Q + PRTTI AKQLETLK A+ +PKP RH+REQL+Q
Sbjct: 125 QQGSGPESQMNVADDGN---GSQKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQ 181
Query: 240 DTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
+TGL+MRV+QVWFQNRR+KE+R+K+ + +FRS +
Sbjct: 182 ETGLNMRVIQVWFQNRRSKERRMKQLSTLGPRRHFFRSPR 221
>gi|242011465|ref|XP_002426470.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
gi|212510582|gb|EEB13732.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
Length = 394
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 160/230 (69%), Gaps = 24/230 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILD+F+L VL+RTWHA C++CH+C A LA+KCF+R G LFC+ DFF+R+GTKC
Sbjct: 33 CAGCDKPILDKFLLNVLDRTWHAECVRCHDCRAALADKCFSREGKLFCRNDFFRRYGTKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC GI P+ +VR+A+D V+HLNCF C++C +QL+TG+E Y+++D K +CK DY K
Sbjct: 93 GGCLQGISPSDLVRKARDKVFHLNCFTCMVCRKQLSTGEELYVLDDNKFICKEDYLTGKT 152
Query: 193 KDGNCLDGDQPNKR--------------------PRTTITAKQLETLKMAYNTSPKPARH 232
G+ LDGD P R PRTTI AKQLE LK A++ +PKP RH
Sbjct: 153 SSGS-LDGD-PETRDSQTENKSPDDGNSGSKRRGPRTTIKAKQLEILKNAFSQTPKPTRH 210
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK--DAGRTRWSQYFRSMKG 280
+REQL+++TGL MRV+QVWFQN+R+KE+RLK+ GR + R M+G
Sbjct: 211 IREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGSSRKMRG 260
>gi|189238568|ref|XP_969484.2| PREDICTED: similar to LIM homeobox 1b [Tribolium castaneum]
Length = 497
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 154/212 (72%), Gaps = 4/212 (1%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C ILD+F+L VLERTWHA C++C +C APL +KCF+R LFC+ DFF+R+GTKC
Sbjct: 154 CAACDKPILDKFLLNVLERTWHADCVRCFDCHAPLTDKCFSRENKLFCRNDFFRRYGTKC 213
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC GI P+ +VR+A+D V+HLNCF C++C +QL+TG+E Y+++D K +CK DY
Sbjct: 214 GGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKDDYLNGNK 273
Query: 193 KDGNCLDGDQPNKR--PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
+ + D +KR PRTTI AKQLE LK A++ +PKP RH+REQL+++TGL MRV+QV
Sbjct: 274 TNKSPDDSSAGSKRRGPRTTIKAKQLEILKTAFSQTPKPTRHIREQLAKETGLPMRVIQV 333
Query: 251 WFQNRRAKEKRLKK--DAGRTRWSQYFRSMKG 280
WFQN+R+KE+RLK+ GR + R M+G
Sbjct: 334 WFQNKRSKERRLKQLTSMGRGPFFGGSRKMRG 365
>gi|341877265|gb|EGT33200.1| CBN-CEH-14 protein [Caenorhabditis brenneri]
Length = 358
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 147/222 (66%), Gaps = 6/222 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C I DRF+ KV +H+ CL+C C L CF R ++CK FFK FGTKC
Sbjct: 49 CSICDKQIKDRFVSKVNGMAYHSACLRCSTCQEELGASCFLRGESMYCKTHFFKNFGTKC 108
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
A C GI P VVR+A +YH+ CF C +C R L TG+EFYL+ +D +LVCK DYE A+
Sbjct: 109 AACSEGIIPDHVVRKASGHIYHVECFTCFICKRVLETGEEFYLIADDARLVCKDDYEQAR 168
Query: 192 AK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
K + +GD NKRPRTTI+AK LETLK AY TS KPARHVREQL+ DTGLDMRV
Sbjct: 169 DKLSLPETADSEGDGGNKRPRTTISAKSLETLKQAYQTSSKPARHVREQLAADTGLDMRV 228
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELK 289
VQVWFQNRRAKEKRLKKDAGR RW R+ SP + +
Sbjct: 229 VQVWFQNRRAKEKRLKKDAGR-RWKSSTRAESDSNSPIESIN 269
>gi|308512223|ref|XP_003118294.1| CRE-CEH-14 protein [Caenorhabditis remanei]
gi|308238940|gb|EFO82892.1| CRE-CEH-14 protein [Caenorhabditis remanei]
Length = 409
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/219 (55%), Positives = 150/219 (68%), Gaps = 3/219 (1%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C I DRF+ KV R +H+ CL+C C L E CF R+ ++C+ F+K+FGTKC
Sbjct: 105 CCLCDKEIRDRFVSKVNGRCYHSSCLRCSTCQDELGETCFLRDEFMYCRPHFYKKFGTKC 164
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
A C GI P VVR+A +YH+ CF C +C R L TG+EFYL+ +D +LVCK DYE A+
Sbjct: 165 ASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYLIADDARLVCKDDYEQAR 224
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
K +GD NKRPRTTI+AK L+TLK AY S KPARHVREQL+ +TGLDMRVVQVW
Sbjct: 225 DKHTAESEGDGSNKRPRTTISAKSLDTLKQAYQASSKPARHVREQLAAETGLDMRVVQVW 284
Query: 252 FQNRRAKEKRLKKDAGRTRW-SQYFRSMKGGTSPKDELK 289
FQNRRAKEKRLKKDAGR RW + R+ SP + +
Sbjct: 285 FQNRRAKEKRLKKDAGR-RWKTSANRAESDSNSPIESIN 322
>gi|313234650|emb|CBY10605.1| unnamed protein product [Oikopleura dioica]
Length = 289
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/202 (58%), Positives = 147/202 (72%), Gaps = 4/202 (1%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
+ C C ILDR++ +V +++H CLKC +CG L+EKCF ++ L C+ DF+KR+
Sbjct: 37 VMHCSSCCRPILDRYVFQVGPYQSYHQHCLKCLDCGLQLSEKCFFKDDQLLCRVDFYKRY 96
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
G KCA C GI P++V+R+A D YHL CF C +C R+ TGD F+L+ED++LVCK DYE
Sbjct: 97 GNKCASCNEGIEPSEVIRKAGDHSYHLECFHCAVCDRRFETGDHFFLLEDKRLVCKEDYE 156
Query: 189 AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVV 248
AK ++G D KRPRTTITAKQL+ LK AY S KPARHVRE LS +TGLDMRVV
Sbjct: 157 DAKMREGQ---DDGNIKRPRTTITAKQLDVLKQAYQQSSKPARHVRESLSTETGLDMRVV 213
Query: 249 QVWFQNRRAKEKRLKKDAGRTR 270
QVWFQNRRAKEKRLKK+AGR R
Sbjct: 214 QVWFQNRRAKEKRLKKEAGRQR 235
>gi|258504711|gb|ACV72975.1| CEH-14 [Caenorhabditis remanei]
Length = 300
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/235 (53%), Positives = 156/235 (66%), Gaps = 4/235 (1%)
Query: 56 DYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARN 115
D+ + V+ P C C I DRF+ KV R +H+ CL+C C L E CF R+
Sbjct: 17 DFTNVNAVH-PNLGEAVCCLCDKEIRDRFVSKVNGRCYHSSCLRCSTCQDELGETCFLRD 75
Query: 116 GLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL 175
++C+ F+K+FGTKCA C GI P VVR+A +YH+ CF C +C R L TG+EFYL
Sbjct: 76 ECMYCRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYL 135
Query: 176 M-EDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
+ +D +LVCK DYE A+ K +GD NKRPRTTI+AK L+TLK AY S KPARHVR
Sbjct: 136 IADDARLVCKDDYEQARDKHTAESEGDGSNKRPRTTISAKSLDTLKQAYQASSKPARHVR 195
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRW-SQYFRSMKGGTSPKDEL 288
EQL+ +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW + R+ SP + +
Sbjct: 196 EQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGR-RWKTSANRAESDSNSPIESI 249
>gi|56694836|gb|AAW23080.1| Lim3 [Oikopleura dioica]
Length = 289
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/202 (57%), Positives = 147/202 (72%), Gaps = 4/202 (1%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
+ C C ILDR++ +V +++H CLKC +CG L+EKCF ++ L C+ DF+KR+
Sbjct: 37 VMHCSSCCRPILDRYVFQVGPYQSYHQHCLKCLDCGLQLSEKCFFKDDQLLCRVDFYKRY 96
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
G KCA C GI P++V+++A D YHL CF C +C R+ TGD F+L+ED++LVCK DYE
Sbjct: 97 GNKCASCNEGIEPSEVIQKAGDHSYHLECFHCAVCDRRFETGDHFFLLEDKRLVCKEDYE 156
Query: 189 AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVV 248
AK ++G D KRPRTTITAKQL+ LK AY S KPARHVRE LS +TGLDMRVV
Sbjct: 157 DAKMREGQ---DDGNIKRPRTTITAKQLDVLKQAYQQSSKPARHVRESLSTETGLDMRVV 213
Query: 249 QVWFQNRRAKEKRLKKDAGRTR 270
QVWFQNRRAKEKRLKK+AGR R
Sbjct: 214 QVWFQNRRAKEKRLKKEAGRQR 235
>gi|258504705|gb|ACV72972.1| CEH-14 [Caenorhabditis remanei]
gi|258504707|gb|ACV72973.1| CEH-14 [Caenorhabditis remanei]
gi|258504709|gb|ACV72974.1| CEH-14 [Caenorhabditis remanei]
gi|258504713|gb|ACV72976.1| CEH-14 [Caenorhabditis remanei]
gi|258504717|gb|ACV72978.1| CEH-14 [Caenorhabditis remanei]
gi|258504719|gb|ACV72979.1| CEH-14 [Caenorhabditis remanei]
gi|258504721|gb|ACV72980.1| CEH-14 [Caenorhabditis remanei]
gi|258504723|gb|ACV72981.1| CEH-14 [Caenorhabditis remanei]
gi|258504727|gb|ACV72983.1| CEH-14 [Caenorhabditis remanei]
gi|258504729|gb|ACV72984.1| CEH-14 [Caenorhabditis remanei]
gi|258504731|gb|ACV72985.1| CEH-14 [Caenorhabditis remanei]
gi|258504733|gb|ACV72986.1| CEH-14 [Caenorhabditis remanei]
Length = 304
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 155/238 (65%), Gaps = 6/238 (2%)
Query: 56 DYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARN 115
D+ + V+ P C C I DRF+ KV R +H+ CL+C C L E CF R+
Sbjct: 17 DFTNVNAVH-PNLGEAVCCLCDKEIRDRFVSKVNGRCYHSSCLRCSTCQDELGETCFLRD 75
Query: 116 GLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL 175
++C+ F+K+FGTKCA C GI P VVR+A +YH+ CF C +C R L TG+EFYL
Sbjct: 76 EFMYCRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYL 135
Query: 176 M-EDRKLVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPA 230
+ +D +LVCK DYE A+ K D +GD NKRPRTTI+AK L+TLK AY S KPA
Sbjct: 136 IADDARLVCKDDYEQARDKLGLPDTAESEGDGSNKRPRTTISAKSLDTLKQAYQASSKPA 195
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDEL 288
RHVREQL+ +TGLDMRVVQVWFQNRRAKEKRLKKDAGR + R+ SP + +
Sbjct: 196 RHVREQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKTSANRAESDSNSPIESI 253
>gi|258504735|gb|ACV72987.1| CEH-14 [Caenorhabditis remanei]
Length = 304
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 155/238 (65%), Gaps = 6/238 (2%)
Query: 56 DYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARN 115
D+ + V+ P C C I DRF+ KV R +H+ CL+C C L E CF R+
Sbjct: 17 DFTNVNAVH-PNLGEAVCCLCDKEIRDRFVSKVNGRCYHSSCLRCSTCQDELGETCFLRD 75
Query: 116 GLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL 175
++C+ F+K+FGTKCA C GI P VVR+A +YH+ CF C +C R L TG+EFYL
Sbjct: 76 ECMYCRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYL 135
Query: 176 M-EDRKLVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPA 230
+ +D +LVCK DYE A+ K D +GD NKRPRTTI+AK L+TLK AY S KPA
Sbjct: 136 IADDARLVCKDDYEQARDKLGLPDTAESEGDGSNKRPRTTISAKSLDTLKQAYQASSKPA 195
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDEL 288
RHVREQL+ +TGLDMRVVQVWFQNRRAKEKRLKKDAGR + R+ SP + +
Sbjct: 196 RHVREQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKTSSNRAESDSNSPIESI 253
>gi|301778549|ref|XP_002924694.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Ailuropoda melanoleuca]
Length = 365
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 149/241 (61%), Gaps = 50/241 (20%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C APLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPLCAGCDQHILDRFILKALDRHWHSKCLKCTDCHAPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK + + + P +
Sbjct: 151 AKQRG---------------------------QWGSPPT----------------LLSPS 167
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK---IDLDSNFSHSHGK 302
VWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++ D D++ S +
Sbjct: 168 VWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRARGGPKSDKDSVQEEGQDSDADVSFTDEP 227
Query: 303 T 303
T
Sbjct: 228 T 228
>gi|258504715|gb|ACV72977.1| CEH-14 [Caenorhabditis remanei]
gi|258504725|gb|ACV72982.1| CEH-14 [Caenorhabditis remanei]
Length = 304
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 155/238 (65%), Gaps = 6/238 (2%)
Query: 56 DYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARN 115
D+ + V+ P C C I DRF+ KV R +H+ CL+C C L E CF R+
Sbjct: 17 DFTNVNAVH-PNLGEAVCCLCDKEIRDRFVSKVNGRCYHSSCLRCSTCQDELGETCFLRD 75
Query: 116 GLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL 175
++C+ F+K+FGTKCA C GI P VVR+A +YH+ CF C +C R L TG+EFYL
Sbjct: 76 ECMYCRPHFYKKFGTKCASCTEGIVPDHVVRKASGHIYHVECFTCFICKRTLETGEEFYL 135
Query: 176 M-EDRKLVCKPDYEAAKAK----DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPA 230
+ +D +LVCK DYE A+ K D +GD NKRPRTTI+AK L+TLK AY S KPA
Sbjct: 136 IADDARLVCKDDYEQARDKLGLPDTAESEGDGSNKRPRTTISAKSLDTLKQAYQASSKPA 195
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDEL 288
RHVREQL+ +TGLDMRVVQVWFQNRRAKEKRLKKDAGR + R+ SP + +
Sbjct: 196 RHVREQLAAETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKTSANRAESDSNSPIESI 253
>gi|432899669|ref|XP_004076609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oryzias latipes]
Length = 402
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 156/250 (62%), Gaps = 43/250 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C ILDRF+LKVL+R WH +C++C EC L EKCF+R+G L+CK DFF+RFGTKC
Sbjct: 4 CTSCEKPILDRFLLKVLDRPWHVKCVQCCECKCSLTEKCFSRDGRLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC GI P+ +VRRA+ V+HLNCF CVMC +QL+TG+E Y++++ K VCK DY+ +
Sbjct: 64 GGCSQGILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEELYILDEFKFVCKEDYQNSNG 123
Query: 193 KDGNCL------------DGDQPN------------------------------KRPRTT 210
KD L D P + PRTT
Sbjct: 124 KDTILLSVTTCSEPSLSPDSQDPQDDGKDSESGHLSDKDACGNDNDEQSAVGKRRGPRTT 183
Query: 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGRT 269
I AKQLETLK A+ +PKP RH+REQLS++TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 IKAKQLETLKAAFAATPKPTRHIREQLSRETGLNMRVIQVWFQNRRSKERRMKQLSALSA 243
Query: 270 RWSQYFRSMK 279
R +FRS +
Sbjct: 244 RRHVFFRSPR 253
>gi|148225925|ref|NP_001084128.1| LIM/homeobox protein Lhx1 [Xenopus laevis]
gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1;
Short=x-Lhx1; Short=xLIM-1
gi|64830|emb|CAA45353.1| homeobox protein [Xenopus laevis]
gi|213623130|gb|AAI69338.1| Homeobox protein [Xenopus laevis]
gi|213623134|gb|AAI69340.1| Homeobox protein [Xenopus laevis]
Length = 403
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 156/252 (61%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----E 188
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLNNNN 123
Query: 189 AAKAKDGNCLDGDQPN----------------------------------------KRPR 208
AAK + G P+ + PR
Sbjct: 124 AAKENSFISVTGSDPSLSPESQDPLQDDAKDSESANVSDKEAGINENDDQNLGAKRRGPR 183
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 243
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 GARRHAFFRSPR 255
>gi|431898999|gb|ELK07369.1| LIM/homeobox protein Lhx3 [Pteropus alecto]
Length = 357
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/224 (55%), Positives = 139/224 (62%), Gaps = 53/224 (23%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CKEDFFKRFG
Sbjct: 31 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKEDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK Q Q G
Sbjct: 151 AK--------------------------------------------QRGQREG-----AT 161
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK 289
VWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++
Sbjct: 162 VWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRARGGSKSDKDSVQ 205
>gi|18858973|ref|NP_571291.1| LIM/homeobox protein Lhx1 [Danio rerio]
gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|577525|gb|AAA92157.1| homeodomain protein [Danio rerio]
gi|190336961|gb|AAI62664.1| LIM homeobox 1a [Danio rerio]
gi|190339482|gb|AAI62396.1| LIM homeobox 1a [Danio rerio]
Length = 405
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 155/252 (61%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDYLSNTN 123
Query: 192 AKDGNCLD----------------------------------GDQPN---------KRPR 208
KD N L G+ N + PR
Sbjct: 124 GKDSNLLSVTACSDPSLSPDSQDQLQDDVKDAEIANLSDKETGNNENDDQNLGGKRRGPR 183
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 243
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 GARRHAFFRSPR 255
>gi|62859483|ref|NP_001016082.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|189441838|gb|AAI67665.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624072|gb|AAI70608.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624092|gb|AAI70634.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
Length = 402
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 158/252 (62%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC +GI P+ +VR+A++ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY +A +
Sbjct: 65 AGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYASASS 124
Query: 193 KDGNCL--------------------------------DGDQPNKR------------PR 208
+ L D + N PR
Sbjct: 125 LKESSLNSVSSCTDRSLSPDLQDPIQDESKETDHSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|154147696|ref|NP_001093698.1| LIM homeobox 1 [Xenopus (Silurana) tropicalis]
gi|138519843|gb|AAI35732.1| lhx1 protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 156/256 (60%), Gaps = 49/256 (19%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLNNNN 123
Query: 188 ---EAAKAKDGNCLDGDQPN---------------------------------------- 204
AAK + G P+
Sbjct: 124 NNNNAAKENSFISVTGSDPSLSPESQDPLQDDAKDSESANISDKEAGVNENDDQNLGAKR 183
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+ PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 184 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 243
Query: 265 -DAGRTRWSQYFRSMK 279
A R +FRS +
Sbjct: 244 LSALGARRHAFFRSPR 259
>gi|348525932|ref|XP_003450475.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 399
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 155/249 (62%), Gaps = 43/249 (17%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C ILDRF+LKVL+R WH +C++C +C L EKCF+R G L+CK DFF++FGTK
Sbjct: 3 QCASCEKPILDRFLLKVLDRPWHIKCVQCCDCKCSLTEKCFSREGKLYCKNDFFRKFGTK 62
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CAGC GI P+ +VRRA+ V+HLNCF CVMC +QL+TG+E Y++++ K VCK DYE
Sbjct: 63 CAGCAQGILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEELYILDEFKFVCKEDYENNS 122
Query: 192 AKDGNCL------------DGDQPN------------------------------KRPRT 209
KD L D P + PRT
Sbjct: 123 GKDTILLSVTTCSDPSLSPDSQDPQDDGKDSENGHLSDKDTCSNENDEQSAVGKRRGPRT 182
Query: 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGR 268
TI AKQLETLK A+ +PKP RH+REQLS++TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 183 TIKAKQLETLKAAFAATPKPTRHIREQLSRETGLNMRVIQVWFQNRRSKERRMKQLSALS 242
Query: 269 TRWSQYFRS 277
R +FR+
Sbjct: 243 ARRHVFFRN 251
>gi|338727662|ref|XP_001915147.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Equus caballus]
Length = 403
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 161/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC A L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKANLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|147902022|ref|NP_001084038.1| LIM/homeobox protein Lhx5 [Xenopus laevis]
gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5;
AltName: Full=xLIM-2A
gi|840658|gb|AAA99464.1| LIM class homeodomain protein [Xenopus laevis]
gi|54311470|gb|AAH84744.1| Lim5/Lhx5 protein [Xenopus laevis]
Length = 402
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 159/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC +GI P+ +VR+A++ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY +A +
Sbjct: 65 AGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYISASS 124
Query: 193 KDGNCLDG------------------------------------------DQPNKR--PR 208
+ L+ + KR PR
Sbjct: 125 LKESSLNSVSSCTDRSLSPDIQDPIQDESKETDHSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFIATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|351694748|gb|EHA97666.1| LIM/homeobox protein Lhx5 [Heterocephalus glaber]
Length = 402
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|327282632|ref|XP_003226046.1| PREDICTED: LIM/homeobox protein Lhx5-like [Anolis carolinensis]
Length = 400
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 159/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY +A
Sbjct: 65 AGCAQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYLSSAS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPMQDDPKETDNSTSSDKETTNNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|355564712|gb|EHH21212.1| hypothetical protein EGK_04224, partial [Macaca mulatta]
Length = 293
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 159/250 (63%), Gaps = 45/250 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRS 277
R +FRS
Sbjct: 245 GARRHAFFRS 254
>gi|391342699|ref|XP_003745653.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 405
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 157/251 (62%), Gaps = 44/251 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R+WHA+C++C +C L EKCF+R+G L+C+ DF+KRFGTKC
Sbjct: 6 CAGCERPILDRFLLHVLDRSWHAKCVQCTDCRCSLIEKCFSRDGKLYCRSDFYKRFGTKC 65
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC GI PT +VRRA+ V+HL CF C++C +QL+TG+E Y++++ + +CK DY +
Sbjct: 66 AGCGQGISPTDLVRRARSKVFHLKCFTCLVCRKQLSTGEELYVLDENRFICKEDYLNQRQ 125
Query: 193 KDGNCLD--------------------------------------------GDQPNKRPR 208
++ N L+ G Q + PR
Sbjct: 126 QEKNSLNIISRCNDAGLPPNIEDPALPGLKRPDSGGSGPESGQANAPDDGSGGQKRRGPR 185
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 268
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 186 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLTTL 245
Query: 269 TRWSQYFRSMK 279
+FRS +
Sbjct: 246 GARRHFFRSPR 256
>gi|11641283|ref|NP_071758.1| LIM/homeobox protein Lhx5 [Homo sapiens]
gi|332840493|ref|XP_001153819.2| PREDICTED: LIM/homeobox protein Lhx5 [Pan troglodytes]
gi|397525022|ref|XP_003832477.1| PREDICTED: LIM/homeobox protein Lhx5 [Pan paniscus]
gi|426374256|ref|XP_004053995.1| PREDICTED: LIM/homeobox protein Lhx5 [Gorilla gorilla gorilla]
gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|11527289|gb|AAG36963.1|AF291181_1 LHX5 protein [Homo sapiens]
gi|80475867|gb|AAI09231.1| LIM homeobox 5 [Homo sapiens]
gi|119618466|gb|EAW98060.1| LIM homeobox 5 [Homo sapiens]
gi|261861188|dbj|BAI47116.1| LIM homeobox 5 [synthetic construct]
Length = 402
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|281347117|gb|EFB22701.1| hypothetical protein PANDA_014076 [Ailuropoda melanoleuca]
Length = 369
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 149/243 (61%), Gaps = 35/243 (14%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
A IP C GC ILDRFILK L+R WH++CLKC +C APLAE+CF+R ++CK+DFFKR
Sbjct: 29 AEIPLCAGCDQHILDRFILKALDRHWHSKCLKCTDCHAPLAERCFSRGESVYCKDDFFKR 88
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DY
Sbjct: 89 FGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 188 EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
E AK + SP +
Sbjct: 149 ETAKQR----------------------------GQWGSPPTLLSPSAKWGWGPCGGGGG 180
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK---IDLDSNFSHSH 300
VWFQNRRAKEKRLKKDAGR RW QYFRSMK G S KD ++ D D++ S +
Sbjct: 181 RGVWFQNRRAKEKRLKKDAGRQRWGQYFRSMKRARGGPKSDKDSVQEEGQDSDADVSFTD 240
Query: 301 GKT 303
T
Sbjct: 241 EPT 243
>gi|432113616|gb|ELK35898.1| LIM/homeobox protein Lhx1 [Myotis davidii]
Length = 272
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/262 (46%), Positives = 160/262 (61%), Gaps = 48/262 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMKGGTSPKDEL 288
R +FRS SP E+
Sbjct: 244 LGARRHAFFRS--PSPSPSTEV 263
>gi|355786560|gb|EHH66743.1| hypothetical protein EGM_03791, partial [Macaca fascicularis]
Length = 306
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 159/250 (63%), Gaps = 45/250 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRS 277
R +FRS
Sbjct: 245 GARRHAFFRS 254
>gi|311270693|ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
scrofa]
Length = 402
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECXTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|156120769|ref|NP_001095531.1| LIM/homeobox protein Lhx5 [Bos taurus]
gi|151557071|gb|AAI50044.1| LHX5 protein [Bos taurus]
gi|296478515|tpg|DAA20630.1| TPA: LIM homeobox protein 5 [Bos taurus]
Length = 402
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|109098848|ref|XP_001111705.1| PREDICTED: LIM/homeobox protein Lhx5-like [Macaca mulatta]
gi|296213013|ref|XP_002753087.1| PREDICTED: LIM/homeobox protein Lhx5 [Callithrix jacchus]
gi|297693055|ref|XP_002823842.1| PREDICTED: LIM/homeobox protein Lhx5 [Pongo abelii]
gi|402887767|ref|XP_003907254.1| PREDICTED: LIM/homeobox protein Lhx5 [Papio anubis]
Length = 402
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|344295258|ref|XP_003419329.1| PREDICTED: LIM/homeobox protein Lhx5-like [Loxodonta africana]
Length = 402
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|395833990|ref|XP_003790000.1| PREDICTED: LIM/homeobox protein Lhx5 [Otolemur garnettii]
Length = 402
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|431914229|gb|ELK15487.1| LIM/homeobox protein Lhx5 [Pteropus alecto]
Length = 402
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|403281850|ref|XP_003932386.1| PREDICTED: LIM/homeobox protein Lhx5 [Saimiri boliviensis
boliviensis]
Length = 385
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|348532229|ref|XP_003453609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 407
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 154/254 (60%), Gaps = 47/254 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGRLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
GC GI P +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 GGCSQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDYLNNTS 123
Query: 192 AKDGNCL----------------------------------------DGDQPN-----KR 206
KD N L + D N +
Sbjct: 124 VKDTNLLSVTACSDPSLSPDSQDQLQDDVVLKDTEIATLSDKETVNNENDDQNLGGKRRG 183
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 184 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 243
Query: 266 AGRTRWSQYFRSMK 279
A R +FRS +
Sbjct: 244 ALGARRHAFFRSPR 257
>gi|76573889|ref|NP_001029088.1| LIM/homeobox protein Lhx1 [Pan troglodytes]
gi|297700651|ref|XP_002827352.1| PREDICTED: LIM/homeobox protein Lhx1 [Pongo abelii]
gi|311267821|ref|XP_003131754.1| PREDICTED: LIM/homeobox protein Lhx1-like [Sus scrofa]
gi|348567695|ref|XP_003469634.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cavia porcellus]
gi|359320451|ref|XP_003639347.1| PREDICTED: LIM/homeobox protein Lhx1-like [Canis lupus familiaris]
gi|397494263|ref|XP_003818003.1| PREDICTED: LIM/homeobox protein Lhx1 [Pan paniscus]
gi|402899902|ref|XP_003912923.1| PREDICTED: LIM/homeobox protein Lhx1 [Papio anubis]
gi|403274736|ref|XP_003929119.1| PREDICTED: LIM/homeobox protein Lhx1 [Saimiri boliviensis
boliviensis]
gi|410980542|ref|XP_003996636.1| PREDICTED: LIM/homeobox protein Lhx1 [Felis catus]
gi|426348609|ref|XP_004041924.1| PREDICTED: LIM/homeobox protein Lhx1 [Gorilla gorilla gorilla]
gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
gi|56122342|gb|AAV74322.1| LIM homeobox protein 1 [Pan troglodytes]
gi|355568607|gb|EHH24888.1| LIM/homeobox protein Lhx1 [Macaca mulatta]
gi|444720995|gb|ELW61755.1| LIM/homeobox protein Lhx1 [Tupaia chinensis]
Length = 406
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|296201935|ref|XP_002748333.1| PREDICTED: LIM/homeobox protein Lhx1 [Callithrix jacchus]
Length = 406
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|157428018|ref|NP_001098917.1| LIM/homeobox protein Lhx1 [Bos taurus]
gi|358417202|ref|XP_003583582.1| PREDICTED: LIM/homeobox protein Lhx1-like [Bos taurus]
gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus]
gi|296477035|tpg|DAA19150.1| TPA: LIM homeobox protein 1 [Bos taurus]
gi|440905066|gb|ELR55504.1| LIM/homeobox protein Lhx1 [Bos grunniens mutus]
Length = 406
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|281343471|gb|EFB19055.1| hypothetical protein PANDA_014809 [Ailuropoda melanoleuca]
Length = 354
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|6678690|ref|NP_032525.1| LIM/homeobox protein Lhx5 [Mus musculus]
gi|20514764|ref|NP_620605.1| LIM/homeobox protein Lhx5 [Rattus norvegicus]
gi|47606426|sp|P61376.1|LHX5_RAT RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-2
gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|531220|gb|AAA62162.1| amino acid feature: homeodomain, bp 895 .. 1074; amino acid
feature: LIM1, bp 373 .. 516; amino acid feature: LIM2,
bp 550 .. 705 [Rattus norvegicus]
gi|1388183|gb|AAC52842.1| LIM/homeodomain [Mus musculus]
gi|26329557|dbj|BAC28517.1| unnamed protein product [Mus musculus]
gi|26339568|dbj|BAC33455.1| unnamed protein product [Mus musculus]
gi|34784227|gb|AAH57585.1| LIM homeobox protein 5 [Mus musculus]
gi|74148661|dbj|BAE24281.1| unnamed protein product [Mus musculus]
gi|148687827|gb|EDL19774.1| LIM homeobox protein 5 [Mus musculus]
gi|149063463|gb|EDM13786.1| LIM homeobox protein 5 [Rattus norvegicus]
Length = 402
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|431890885|gb|ELK01764.1| LIM/homeobox protein Lhx1 [Pteropus alecto]
Length = 406
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|6678688|ref|NP_032524.1| LIM/homeobox protein Lhx1 [Mus musculus]
gi|94400804|ref|NP_665887.3| LIM/homeobox protein Lhx1 [Rattus norvegicus]
gi|354477124|ref|XP_003500772.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cricetulus griseus]
gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Rlim
gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein LMX-2; AltName:
Full=Homeobox protein Lim-1
gi|2144068|pir||I58187 homeotic protein lim-1 - rat
gi|425217|emb|CAA81797.1| lim1 [Mus musculus]
gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.]
gi|587463|emb|CAA57164.1| lmx2 [Mesocricetus auratus]
gi|4104801|gb|AAD02169.1| homeobox protein Lim1 [Mus musculus]
gi|62201098|gb|AAH92374.1| Lhx1 protein [Mus musculus]
gi|148683791|gb|EDL15738.1| LIM homeobox protein 1 [Mus musculus]
gi|149053699|gb|EDM05516.1| LIM homeobox protein 1 [Rattus norvegicus]
Length = 406
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|18858977|ref|NP_571293.1| LIM/homeobox protein Lhx5 [Danio rerio]
gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5
gi|840664|gb|AAA99465.1| LIM class homeodomain protein [Danio rerio]
gi|68534671|gb|AAH98523.1| LIM homeobox 5 [Danio rerio]
Length = 399
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 159/249 (63%), Gaps = 45/249 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C EC L EKCF+R+G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEKCFSRDGKLYCKIDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC GI P+ +VRRA+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY +A A
Sbjct: 65 AGCLQGISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDYLSASA 124
Query: 193 -KDGN----------CLDGDQPN---------------------------------KRPR 208
K+ N L D P+ + PR
Sbjct: 125 IKEVNLNSVSSCTDRSLSPDLPDQIQDDTKETDNSTSSDKDTNNNENEEQNSCTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFR 276
R +FR
Sbjct: 245 GARRHAFFR 253
>gi|354497499|ref|XP_003510857.1| PREDICTED: LIM/homeobox protein Lhx5-like [Cricetulus griseus]
gi|344257745|gb|EGW13849.1| LIM/homeobox protein Lhx5 [Cricetulus griseus]
Length = 402
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Macaca fascicularis]
Length = 403
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 1 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 60
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 61 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 120
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 121 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 180
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 181 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 240
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 241 LGARRHAFFRSPR 253
>gi|344285733|ref|XP_003414614.1| PREDICTED: LIM/homeobox protein Lhx1-like [Loxodonta africana]
Length = 406
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 LAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|345790894|ref|XP_543409.3| PREDICTED: LIM/homeobox protein Lhx5 [Canis lupus familiaris]
Length = 402
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|301776020|ref|XP_002923422.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1-like
[Ailuropoda melanoleuca]
Length = 405
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|291407015|ref|XP_002719805.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 402
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKEAANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|440898273|gb|ELR49802.1| LIM/homeobox protein Lhx5, partial [Bos grunniens mutus]
Length = 376
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|410930167|ref|XP_003978470.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 408
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 155/254 (61%), Gaps = 47/254 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGRLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
GC GI P +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY +
Sbjct: 64 GGCFQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSN 123
Query: 192 AKDGNCL----------------------------------------DGDQPN-----KR 206
KD N L + D N +
Sbjct: 124 GKDTNLLSVTTCSDPSLSPDSQDQLQDDVVLKDTEIAALSDKETVNNENDDQNLGGKRRG 183
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 184 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 243
Query: 266 AGRTRWSQYFRSMK 279
A R +FRS +
Sbjct: 244 ALGARRHAFFRSPR 257
>gi|47224946|emb|CAG06516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 155/254 (61%), Gaps = 47/254 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGRLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
GC GI P +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY +
Sbjct: 64 GGCFQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSN 123
Query: 192 AKDGNCL----------------------------------------DGDQPN-----KR 206
KD N L + D N +
Sbjct: 124 VKDTNLLSVTTCSDPSLSPDSQDQLQDDVVLKDTEIAALSDKETVNNENDDQNLGGKRRG 183
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 184 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 243
Query: 266 AGRTRWSQYFRSMK 279
A R +FRS +
Sbjct: 244 ALGARRHAFFRSPR 257
>gi|18858979|ref|NP_571282.1| LIM homeobox 1b [Danio rerio]
gi|2155289|gb|AAB58796.1| LIM class homeodomain protein [Danio rerio]
gi|190336839|gb|AAI62280.1| LIM homeobox 1b [Danio rerio]
gi|190340149|gb|AAI62303.1| LIM homeobox 1b [Danio rerio]
Length = 402
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 158/251 (62%), Gaps = 44/251 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C +C L ++CF+R G L+CK DFF+R+GTKC
Sbjct: 4 CAGCERPILDRFLLSVLDRAWHAKCVQCCDCKCSLTDRCFSREGRLYCKNDFFRRYGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
GC GI P+ +VR+A+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY +
Sbjct: 64 GGCAQGISPSDLVRKARSKVFHLNCFTCIMCNKQLSTGEELYILDEYKFVCKEDYLNNSN 123
Query: 192 AKDGNCL-------------------------------------DGDQPN-----KRPRT 209
KD N L + D+ N + PRT
Sbjct: 124 GKDTNLLSITTCSDPSLSPESQDPQDDYKDSESGPMSDKETCNNENDEQNLGGKRRGPRT 183
Query: 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGR 268
TI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 TIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALG 243
Query: 269 TRWSQYFRSMK 279
R +FRS +
Sbjct: 244 ARRHMFFRSPR 254
>gi|52354701|gb|AAH82847.1| Unknown (protein for MGC:81549) [Xenopus laevis]
Length = 402
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 156/252 (61%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R+ L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSRDSKLYCKTDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC +GI P+ +VR+A++ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY
Sbjct: 65 AGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYTSVSS 124
Query: 188 ---------------------------EAAKAKDGNCLDGDQPNKR------------PR 208
E+ + D + N PR
Sbjct: 125 LKESSLNSVSSCTDRSLSPDLQDPIKDESKETDHSTSSDKETTNNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|291405647|ref|XP_002719296.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 406
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|348535371|ref|XP_003455174.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oreochromis niloticus]
Length = 396
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 159/249 (63%), Gaps = 45/249 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C EC L EKCF+R+G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEKCFSRDGKLYCKIDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC GI P +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++ A
Sbjct: 65 AGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSGA 124
Query: 193 ---------------------------------------KDGNCLDGDQPN-----KRPR 208
K+ N ++ ++ N + PR
Sbjct: 125 IKEVNLNSVSSCTDRSLSPDLQDPIQDDIKETDNSTSSDKETNNIENEEQNSGAKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFR 276
R +FR
Sbjct: 245 GARRHAFFR 253
>gi|410915338|ref|XP_003971144.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 397
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 164/269 (60%), Gaps = 43/269 (15%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C ILDRF+LKVL+R WH +C++C +C L+EKCF+R G L+CK DFF+RFGTK
Sbjct: 3 QCTSCEKPILDRFLLKVLDRPWHVKCVQCCDCKCTLSEKCFSREGKLYCKNDFFRRFGTK 62
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
C GC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY +
Sbjct: 63 CDGCAQGILPSDLVRRAKSKVFHLNCFTCMMCNKQLSTGEELYVLDEFKFVCKEDYHNSS 122
Query: 192 AKDGNCL------------DGDQPN------------------------------KRPRT 209
KD L D P + PRT
Sbjct: 123 GKDTILLSVTSCSDPSMSPDSQDPQDDGKDSETGHLSDKDACGNENDEQGAVGKRRGPRT 182
Query: 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGR 268
TI AKQLETLK A+ +PKP RH+REQLSQ+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 183 TIKAKQLETLKAAFAATPKPTRHIREQLSQETGLNMRVIQVWFQNRRSKERRMKQLSTLG 242
Query: 269 TRWSQYFRSMKGGTSPKDELKIDLDSNFS 297
+R +FR + + + L+ D ++FS
Sbjct: 243 SRRHVFFRGQRRMRALGERLEPDELAHFS 271
>gi|62020648|gb|AAH20470.1| LHX1 protein, partial [Homo sapiens]
Length = 260
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 156/251 (62%), Gaps = 46/251 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKAKD---GNCLDGDQ----PNKRP 207
E+A D G+ + DQ + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRS 277
R +FRS
Sbjct: 244 LGARRHAFFRS 254
>gi|363740116|ref|XP_001234553.2| PREDICTED: LIM/homeobox protein Lhx5 [Gallus gallus]
Length = 402
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 160/252 (63%), Gaps = 45/252 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A++ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY +
Sbjct: 65 AGCSQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYLNSPS 124
Query: 192 AKDG------NCLD--------------------------------GDQPN-----KRPR 208
K+G +C D ++ N + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPMQDDTKETDNSTSSDKETTNNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 GARRHAFFRSPR 256
>gi|410903918|ref|XP_003965440.1| PREDICTED: LIM/homeobox protein Lhx5-like [Takifugu rubripes]
Length = 396
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/249 (46%), Positives = 160/249 (64%), Gaps = 45/249 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C EC L EKCF+R+G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEKCFSRDGKLYCKMDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK D+ ++ A
Sbjct: 65 AGCLQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDFLSSGA 124
Query: 193 ---------------------------------------KDGNCLDGDQPN-----KRPR 208
K+ N ++ ++ N + PR
Sbjct: 125 TKEANLNSVSSCTDRSLSPDLQDPTQDDIKETDNSTSSDKETNNIENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFR 276
R +FR
Sbjct: 245 GARRHAFFR 253
>gi|30410785|ref|NP_005559.2| LIM/homeobox protein Lhx1 [Homo sapiens]
gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1
gi|75517203|gb|AAI01675.1| LIM homeobox 1 [Homo sapiens]
gi|85565997|gb|AAI11937.1| LIM homeobox 1 [Homo sapiens]
gi|119577978|gb|EAW57574.1| LIM homeobox 1 [Homo sapiens]
gi|167773161|gb|ABZ92015.1| LIM homeobox 1 [synthetic construct]
gi|208966670|dbj|BAG73349.1| LIM homeobox 1 [synthetic construct]
Length = 406
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKAKD---GNCLDGDQ----PNKRP 207
E+A D G+ + DQ + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|334327218|ref|XP_001378455.2| PREDICTED: LIM/homeobox protein Lhx5-like [Monodelphis domestica]
Length = 303
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 157/250 (62%), Gaps = 45/250 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY +
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYLNSPS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 VKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETTNNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRS 277
R +FRS
Sbjct: 245 GARRHAFFRS 254
>gi|395531962|ref|XP_003768042.1| PREDICTED: LIM/homeobox protein Lhx1 [Sarcophilus harrisii]
Length = 406
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKAKD---GNCLDGDQ----PNKRP 207
E+A D G+ + DQ + P
Sbjct: 124 AAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|410976694|ref|XP_003994749.1| PREDICTED: LIM/homeobox protein Lhx5 [Felis catus]
Length = 332
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 159/250 (63%), Gaps = 45/250 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCGQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFRS 277
R +FRS
Sbjct: 245 GARRHAFFRS 254
>gi|45382269|ref|NP_990744.1| LIM/homeobox protein Lhx1 [Gallus gallus]
gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|531183|gb|AAA62173.1| amino acid feature: homeodomain, bp 674 .. 853; amino acid feature:
LIM2, bp 326 .. 481; amino acid feature: LIM1, bp 149
..292 [Gallus gallus]
Length = 406
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 157/253 (62%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLNNSN 123
Query: 188 ---------------------------------EAAKAKD---GNCLDGDQ----PNKRP 207
E+A D G+ + DQ + P
Sbjct: 124 TAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|74187870|dbj|BAE24561.1| unnamed protein product [Mus musculus]
Length = 406
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 156/253 (61%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDR +L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRLLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLNSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|47228451|emb|CAG05271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 154/236 (65%), Gaps = 44/236 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C EC L EKCF+R+G L+CK DFF+RFGTKC
Sbjct: 164 CAGCERPILDRFLLNVLDRAWHAKCVQCCECSCNLTEKCFSRDGKLYCKMDFFRRFGTKC 223
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC GI P +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK D+ ++ A
Sbjct: 224 AGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDFLSSGA 283
Query: 193 ---------------------------------------KDGNCLDGDQPN-----KRPR 208
K+ N ++ ++ N + PR
Sbjct: 284 IKEANLNSVSSCTDRSLSPDLQDPTQDDIKETDNSTSSDKETNNIENEEQNSGTKRRGPR 343
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 344 TTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 399
>gi|432885359|ref|XP_004074682.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oryzias latipes]
Length = 396
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 157/249 (63%), Gaps = 45/249 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C +C L EKCF+R+G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCDCNCNLTEKCFSRDGKLYCKMDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY
Sbjct: 65 AGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDYLSPGS 124
Query: 188 ----------------------------------EAAKAKDGNCLDGDQPN-----KRPR 208
+ K+ N ++ ++ N + PR
Sbjct: 125 IKEVSLNSVSSCTDRSLSPDLPDPTQDDIKETDNSTSSDKETNNIENEEQNSGAKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 244
Query: 268 RTRWSQYFR 276
R +FR
Sbjct: 245 GARRHAFFR 253
>gi|449269080|gb|EMC79889.1| LIM/homeobox protein Lhx3, partial [Columba livia]
Length = 342
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/223 (56%), Positives = 144/223 (64%), Gaps = 36/223 (16%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC I+DRFILKVL+R WH++CLKC +C LAEKCF+R ++CKEDFFK
Sbjct: 1 IPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGVYCKEDFFK--- 57
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
C G G + R + G +L+ED +LVCK DYE
Sbjct: 58 --CVGTGRG----ETDGRTR--------------------GGTVWLVEDSRLVCKADYET 91
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK ++ KRPRTTITAKQLETLK AYN SPKPARHVREQLS +TGLDMRVVQ
Sbjct: 92 AKQREAEST-----AKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 146
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--GGTSPKDELKI 290
VWFQNRRAKEKRLKKDAGR RW QYFR+MK GTS D+ I
Sbjct: 147 VWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGTSKSDKDSI 189
>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
Length = 407
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 157/254 (61%), Gaps = 47/254 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLET-LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
RTTI AKQLET LK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 184 RTTIKAKQLETLLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 243
Query: 266 AGRTRWSQYFRSMK 279
A R +FRS +
Sbjct: 244 ALGARRHAFFRSPR 257
>gi|229619776|dbj|BAH58087.1| LIM homeobox protein 1 [Nematostella vectensis]
Length = 358
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 147/216 (68%), Gaps = 17/216 (7%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
+ +C GC I D+F+LKVL+ WHA+C++C +C PL E+CF+R G LFCK DF++R+G
Sbjct: 2 VQQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTERCFSREGKLFCKTDFYRRYG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC+GC+ GI P +VRRA+ LV+H++CF C C RQ+ TGDE Y + D +C+ DY
Sbjct: 62 TKCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDYYH 121
Query: 190 AKAKD---------------GNCLDGDQPNKR--PRTTITAKQLETLKMAYNTSPKPARH 232
+ + LD +KR PRTTI AKQLE LK + +PKP+R+
Sbjct: 122 SHPTNLDDAIDEPKDLSYGLDEDLDAALASKRRGPRTTIKAKQLEALKSTFAATPKPSRN 181
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 268
+RE+L+Q+TGL+MRV+QVWFQNRR+KE+RLK+ G+
Sbjct: 182 IREKLAQETGLNMRVIQVWFQNRRSKERRLKQSGGQ 217
>gi|549846|gb|AAA21644.1| LIM domain transcription factor LIM-1 [Homo sapiens]
Length = 404
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 149/237 (62%), Gaps = 45/237 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCRQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKAKD---GNCLDGDQ----PNKRP 207
E+A D G+ + DQ + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 184 GTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
>gi|47219374|emb|CAG01537.1| unnamed protein product [Tetraodon nigroviridis]
Length = 390
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 158/261 (60%), Gaps = 43/261 (16%)
Query: 80 ILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGI 139
ILDRF+LKVL+R WH +C+ C EC L+EKCF+R G L+CK DFF+RFGTKC GC GI
Sbjct: 4 ILDRFLLKVLDRPWHVKCVHCCECKCTLSEKCFSREGKLYCKNDFFRRFGTKCDGCAQGI 63
Query: 140 PPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCL- 198
P+ +VRRA+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY KD L
Sbjct: 64 LPSDLVRRAKSKVFHLNCFTCMICNKQLSTGEELYILDEFKFVCKEDYHNCNGKDTILLS 123
Query: 199 -----------DGDQPN------------------------------KRPRTTITAKQLE 217
D P + PRTTI AKQLE
Sbjct: 124 VTSCSDPSMSPDSQDPQDDGKDSETGHLSDKDACGNENDEQGAVGKRRGPRTTIKAKQLE 183
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGRTRWSQYFR 276
TLK A+ +PKP RH+REQLSQ+TGL+MRV+QVWFQNRR+KE+R+K+ R +FR
Sbjct: 184 TLKAAFAATPKPTRHIREQLSQETGLNMRVIQVWFQNRRSKERRMKQLSTLGARRHVFFR 243
Query: 277 SMKGGTSPKDELKIDLDSNFS 297
+ + D L+ D ++F+
Sbjct: 244 GQRRMRALGDRLEPDELAHFT 264
>gi|426238599|ref|XP_004013238.1| PREDICTED: LIM/homeobox protein Lhx1 [Ovis aries]
Length = 388
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/253 (46%), Positives = 155/253 (61%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGLCV 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
+GC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 SGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DA 266
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 244 LGARRHAFFRSPR 256
>gi|156379960|ref|XP_001631723.1| predicted protein [Nematostella vectensis]
gi|156218768|gb|EDO39660.1| predicted protein [Nematostella vectensis]
Length = 213
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 147/212 (69%), Gaps = 17/212 (8%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
+ +C GC I D+F+LKVL+ WHA+C++C +C PL E+CF+R G LFCK DF++R+G
Sbjct: 2 VQQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTERCFSREGKLFCKTDFYRRYG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC+GC+ GI P +VRRA+ LV+H++CF C C RQ+ TGDE Y + D +C+ DY
Sbjct: 62 TKCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDYYH 121
Query: 190 A----------KAKD-----GNCLDGDQPNKR--PRTTITAKQLETLKMAYNTSPKPARH 232
+ + KD LD +KR PRTTI AKQLE LK + +PKP+R+
Sbjct: 122 SHPTNLDDAIDEPKDLSYGLDEDLDAALASKRRGPRTTIKAKQLEALKSTFAATPKPSRN 181
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+RE+L+Q+TGL+MRV+QVWFQNRR+KE+RLK+
Sbjct: 182 IREKLAQETGLNMRVIQVWFQNRRSKERRLKQ 213
>gi|426247330|ref|XP_004017439.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5 [Ovis
aries]
Length = 386
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 156/236 (66%), Gaps = 29/236 (12%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKRPRTTITAKQL----------ETLKMAYN 224
K+G +C D D P + +T + K+ ETLK A+
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNLETLKAAFA 184
Query: 225 TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGRTRWSQYFRSMK 279
+PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A R +FRS +
Sbjct: 185 ATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPR 240
>gi|170586684|ref|XP_001898109.1| Homeobox protein ceh-14 [Brugia malayi]
gi|158594504|gb|EDP33088.1| Homeobox protein ceh-14, putative [Brugia malayi]
Length = 319
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 146/220 (66%), Gaps = 35/220 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C + I DRF+LKVL+R++H CL+ RFGTKC
Sbjct: 45 CSKCEEPIRDRFVLKVLDRSFHPHCLR---------------------------RFGTKC 77
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAAK 191
+ C+ GI P VVRRA + VYH++CF C++C R+L TG+EFYL+ D +LVCK DYE AK
Sbjct: 78 SMCDEGICPDMVVRRANEHVYHVSCFQCIICKRELRTGEEFYLIPTDGRLVCKSDYEMAK 137
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
+K+ D D KRPRTTI+AK LETLK AY S KPARHVREQL+ DTGLDMRVVQVW
Sbjct: 138 SKE---TDIDSNTKRPRTTISAKSLETLKQAYQASSKPARHVREQLAADTGLDMRVVQVW 194
Query: 252 FQNRRAKEKRLKKDAGRTRWSQYF--RSMKGGT-SPKDEL 288
FQNRRAKEKRLKKDAGR +W Y +S+ G+ SP D +
Sbjct: 195 FQNRRAKEKRLKKDAGR-QWGTYGIPKSLDSGSASPNDSI 233
>gi|332258740|ref|XP_003278453.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Nomascus
leucogenys]
Length = 374
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 156/256 (60%), Gaps = 52/256 (20%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAG 267
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R A
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRXSSXA- 242
Query: 268 RTRWSQ----YFRSMK 279
RW+ +FRS +
Sbjct: 243 --RWAPRRHAFFRSPR 256
>gi|440808056|gb|AGC24171.1| Lhx3/4, partial [Lymnaea stagnalis]
Length = 127
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 114/130 (87%), Gaps = 3/130 (2%)
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCA C+ GIPPT+VVRRAQ+ VYHL+CFAC+MCARQLNTGDEFYLMEDRKLVCK D
Sbjct: 1 RFGTKCASCDKGIPPTEVVRRAQENVYHLDCFACLMCARQLNTGDEFYLMEDRKLVCKTD 60
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YEAAKA++ + D NKRPRTTITAKQLE LK AYN S KPARHVREQLS +TGLDMR
Sbjct: 61 YEAAKARE---YEMDSSNKRPRTTITAKQLEALKRAYNESNKPARHVREQLSAETGLDMR 117
Query: 247 VVQVWFQNRR 256
VVQVWFQNRR
Sbjct: 118 VVQVWFQNRR 127
>gi|324511990|gb|ADY44978.1| Protein lin-11 [Ascaris suum]
Length = 368
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 163/278 (58%), Gaps = 49/278 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
CGGC ILDR++ VL++TWHA C++C +C PL E CF+R+GL+ C++DF +RFGT+C
Sbjct: 4 CGGCNTAILDRYVFHVLDKTWHASCIQCADCKEPLTETCFSRDGLILCRQDFSRRFGTRC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA--- 189
AGC + + +VRRA+D V+H+ CF C +C ++L+TG++ Y++ + VCK DY A
Sbjct: 64 AGCNVALDRNDLVRRARDKVFHVQCFQCTVCQKKLDTGEQLYILNGNRFVCKHDYLANPE 123
Query: 190 ------------AKAKDGNC-----------------LDGDQ-------------PNKRP 207
++ D +C ++GD + P
Sbjct: 124 LFAGGGGTSECGSEEIDEDCDEASDDIEESNSTGHQEVNGDSVCSGKLDDLSASAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAG 267
RTTI AKQL+TLK A+ ++PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 184 RTTIKAKQLDTLKAAFASTPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ--- 240
Query: 268 RTRWSQYFRSMKGGTSPKDELKIDLDSNFSHSHGKTAF 305
R+ Y + + +D+L F+H +
Sbjct: 241 -LRYGGYRPTRRNRGGSRDDLCAPPGEIFAHDANSEPY 277
>gi|196011854|ref|XP_002115790.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
gi|190581566|gb|EDV21642.1| hypothetical protein TRIADDRAFT_30033 [Trichoplax adhaerens]
Length = 292
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 150/247 (60%), Gaps = 43/247 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I D+F+L VL+R WH +C++C +C L+EKCF+R+G L+C+ DF++ +GTKC
Sbjct: 4 CAGCQLPICDKFLLSVLDRKWHTKCVQCSQCKVQLSEKCFSRDGKLYCRNDFYRTYGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+GC +GIPP ++VRRA+D VYH+ C C +C RQ++TG++ Y+ + + +C+ DY+ + +
Sbjct: 64 SGCGIGIPPNELVRRARDDVYHIKCLKCAICGRQMSTGEQLYINQHNQYICQADYQNSIS 123
Query: 193 KDGNCLD------------------------------------------GDQPNKR-PRT 209
L+ G+ KR PRT
Sbjct: 124 STNTSLNDQSLTDDKEDDNSDYDEKEDETEDLLDNNNEDDLQADNDNESGNNCKKRGPRT 183
Query: 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRT 269
TI +QLE LK A+ +PKP R +RE+L+Q TGL+MRV+QVWFQNRR+KE+R+K++A R
Sbjct: 184 TIKTEQLEMLKNAFAITPKPTRLIRERLAQQTGLNMRVIQVWFQNRRSKERRVKQNACRA 243
Query: 270 RWSQYFR 276
+ ++
Sbjct: 244 MFRHNYQ 250
>gi|194390004|dbj|BAG60518.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 136/209 (65%), Gaps = 31/209 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
Query: 188 -------------------EAAKAKD---GNCLDGDQ----PNKRPRTTITAKQLETLKM 221
E+A D G+ + DQ + PRTTI AKQLETLK
Sbjct: 124 VAKENSLHSDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKA 183
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQV 250
A+ +PKP RH+REQL+Q+TGL+MRV+QV
Sbjct: 184 AFAATPKPTRHIREQLAQETGLNMRVIQV 212
>gi|209489466|gb|ACI49225.1| hypothetical protein Csp3_JD05.010 [Caenorhabditis angaria]
Length = 344
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 142/234 (60%), Gaps = 41/234 (17%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C ILDR++ VL + WH CL+C +C AP+ CF+R+GL+ CK DF +R+G +
Sbjct: 3 ECAACARPILDRYVFTVLGKCWHQECLRCSDCAAPMTMTCFSRDGLILCKNDFSRRYGQR 62
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CAGC+ + ++VRRA+D V+H+ CF C +C R L TGD+ Y++E + VC+ D++ A
Sbjct: 63 CAGCDGNLDKEELVRRARDKVFHIQCFQCSVCQRLLATGDQLYILEGNRFVCQTDFQNAT 122
Query: 192 ----------------------AKDGNC-------LDGDQPNKR------------PRTT 210
+D C +DGD K PRTT
Sbjct: 123 KTSTPTSSHRPLSNGSDCASDIEEDTICDEFQVDEIDGDMMGKDNSDDSNSAKRRGPRTT 182
Query: 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
I AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 183 IKAKQLETLKSAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 236
>gi|441623345|ref|XP_003279691.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Nomascus
leucogenys]
Length = 419
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 144/237 (60%), Gaps = 14/237 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK--- 126
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFK
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKXAP 92
Query: 127 --RFGTKCAGCE-MGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
R G +G PP + + A + C A A T E
Sbjct: 93 KPRLRAGAEGTPALGTPPLTIAQ-ASARAFRGACGAGWGWAPGAPTSRAGRGGEGWGSGW 151
Query: 184 KPDYEAAKAKD-GNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ +A + + KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TG
Sbjct: 152 G--RKGCRASPLARRAEAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETG 209
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELKIDLDSN 295
LDMRVVQVWFQNRRAKEKRLKKDAGR RW QYFR+MK G S KD ++ DS+
Sbjct: 210 LDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDSD 266
>gi|351696664|gb|EHA99582.1| LIM/homeobox protein Lhx1 [Heterocephalus glaber]
Length = 406
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 136/223 (60%), Gaps = 45/223 (20%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSN 123
Query: 188 ---------------------------------EAAKA--KDGNCLDGDQPN-----KRP 207
E+A K+G + D N + P
Sbjct: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QV
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQV 226
>gi|8248965|gb|AAC60669.2| lateral and intermediate mesoderm differentiation and neurogenesis
protein [Mus sp.]
Length = 407
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 146/246 (59%), Gaps = 54/246 (21%)
Query: 80 ILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGI 139
+LDRF+L VL+R EC L EKCF+R G L+CK DFF+ FGTKCAGC GI
Sbjct: 19 VLDRFLLNVLDRAC--------ECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGI 70
Query: 140 PPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY------------ 187
P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 71 SPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSL 130
Query: 188 --------------------------EAAKA--KDGNCLDGDQPN-----KRPRTTITAK 214
E+A K+G + D N + PRTTI AK
Sbjct: 131 HSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAK 190
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAGRTRWSQ 273
QLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE R+K+ A R
Sbjct: 191 QLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKEARMKQLSALGARRHA 250
Query: 274 YFRSMK 279
+FRS +
Sbjct: 251 FFRSPR 256
>gi|17508255|ref|NP_492696.1| Protein LIN-11 [Caenorhabditis elegans]
gi|2506818|sp|P20154.2|LIN11_CAEEL RecName: Full=Protein lin-11; AltName: Full=Abnormal cell lineage
protein 11
gi|3881427|emb|CAB02310.1| Protein LIN-11 [Caenorhabditis elegans]
Length = 405
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 141/235 (60%), Gaps = 42/235 (17%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C ILDR++ VL + WH CL+C +C AP++ CF+R+GL+ CK DF +R+ +
Sbjct: 67 ECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSRDGLILCKTDFSRRYSQR 126
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME + VC+ D++ A
Sbjct: 127 CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQTAT 186
Query: 192 AK------------------------------------DGNC-----LDGDQPNKR-PRT 209
+G+C D + +R PRT
Sbjct: 187 KTSTPTSIHRPVSNGSECNSDVEEDNVDACDEVGLDDGEGDCGKDNSDDSNSAKRRGPRT 246
Query: 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
TI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 247 TIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRMKQ 301
>gi|829167|emb|CAA38240.1| lin-11 protein [Caenorhabditis elegans]
gi|226840|prf||1608206A lin-11 gene
Length = 382
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 140/235 (59%), Gaps = 42/235 (17%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C ILDR++ VL + WH CL+C +C AP++ CF+R+GL+ CK DF +R+ +
Sbjct: 44 ECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSRDGLILCKTDFSRRYSQR 103
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME + VC+ D++ A
Sbjct: 104 CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQTAT 163
Query: 192 AK------------------------------------DGNC----LDGDQPNKR--PRT 209
+G+C D KR PRT
Sbjct: 164 KTSTPTSIHRPVSNGSECNSDVEEDNVDACDEVGLDDGEGDCGKDNSDDSNSAKRRGPRT 223
Query: 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
TI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 224 TIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRMKQ 278
>gi|258504101|gb|ACV72756.1| LIN-11 [Caenorhabditis remanei]
gi|258504105|gb|ACV72758.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 146/245 (59%), Gaps = 42/245 (17%)
Query: 62 PVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCK 121
P I+S +C C ILDR++ VL + WH CL+C +C AP++ CF+++GL+ CK
Sbjct: 52 PHISEISSGNECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSKDGLILCK 111
Query: 122 EDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKL 181
D+ +R+G +CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME +
Sbjct: 112 TDYSRRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRF 171
Query: 182 VCKPDYEAAKAK------------------------------------DGNC-----LDG 200
+C+ D++ A +G+C D
Sbjct: 172 MCQNDFQTATKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDGEGDCGKDNSDDS 231
Query: 201 DQPNKR-PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259
+ +R PRTTI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE
Sbjct: 232 NSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKE 291
Query: 260 KRLKK 264
+R+K+
Sbjct: 292 RRMKQ 296
>gi|308485364|ref|XP_003104881.1| CRE-LIN-11 protein [Caenorhabditis remanei]
gi|308257579|gb|EFP01532.1| CRE-LIN-11 protein [Caenorhabditis remanei]
Length = 415
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 144/240 (60%), Gaps = 42/240 (17%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
I+S +C C ILDR++ VL + WH CL+C +C AP++ CF+++GL+ CK D+ +
Sbjct: 72 ISSGNECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSKDGLILCKTDYSR 131
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+G +CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME + +C+ D
Sbjct: 132 RYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQND 191
Query: 187 YEAAKAK------------------------------------DGNC----LDGDQPNKR 206
++ A +G+C D KR
Sbjct: 192 FQTATKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDGEGDCGKDNSDDSNSAKR 251
Query: 207 --PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
PRTTI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 252 RGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRMKQ 311
>gi|258504089|gb|ACV72750.1| LIN-11 [Caenorhabditis remanei]
gi|258504091|gb|ACV72751.1| LIN-11 [Caenorhabditis remanei]
gi|258504093|gb|ACV72752.1| LIN-11 [Caenorhabditis remanei]
gi|258504099|gb|ACV72755.1| LIN-11 [Caenorhabditis remanei]
gi|258504113|gb|ACV72762.1| LIN-11 [Caenorhabditis remanei]
gi|258504115|gb|ACV72763.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 145/240 (60%), Gaps = 42/240 (17%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
I+S +C C ILDR++ VL + WH CL+C +C AP++ CF+++GL+ CK D+ +
Sbjct: 57 ISSGNECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSKDGLILCKTDYSR 116
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+G +CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME + +C+ D
Sbjct: 117 RYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQND 176
Query: 187 YEAAKAK------------------------------------DGNC-----LDGDQPNK 205
++ A +G+C D + +
Sbjct: 177 FQTATKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDGEGDCGKDNSDDSNSAKR 236
Query: 206 R-PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
R PRTTI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 237 RGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRMKQ 296
>gi|258504095|gb|ACV72753.1| LIN-11 [Caenorhabditis remanei]
gi|258504097|gb|ACV72754.1| LIN-11 [Caenorhabditis remanei]
gi|258504103|gb|ACV72757.1| LIN-11 [Caenorhabditis remanei]
gi|258504107|gb|ACV72759.1| LIN-11 [Caenorhabditis remanei]
gi|258504109|gb|ACV72760.1| LIN-11 [Caenorhabditis remanei]
gi|258504111|gb|ACV72761.1| LIN-11 [Caenorhabditis remanei]
gi|258504117|gb|ACV72764.1| LIN-11 [Caenorhabditis remanei]
gi|258504119|gb|ACV72765.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 144/240 (60%), Gaps = 42/240 (17%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
I+S +C C ILDR++ VL + WH CL+C +C AP++ CF+++GL+ CK D+ +
Sbjct: 57 ISSGNECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSKDGLILCKTDYSR 116
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+G +CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME + +C+ D
Sbjct: 117 RYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQND 176
Query: 187 YEAAKAK------------------------------------DGNC----LDGDQPNKR 206
++ A +G+C D KR
Sbjct: 177 FQTATKTSTPTSMHRPISNGSECNSDMEEDAVDACDDVGLDDGEGDCGKDNSDDSNSAKR 236
Query: 207 --PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
PRTTI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 237 RGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRMKQ 296
>gi|449479889|ref|XP_004177057.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1
[Taeniopygia guttata]
Length = 419
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 135/223 (60%), Gaps = 45/223 (20%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+ FGTKC
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K V K DY
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVDKEDYLNNSN 123
Query: 188 ---------------------------------EAAKAKD---GNCLDGDQ----PNKRP 207
E+A D G+ + DQ + P
Sbjct: 124 TAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGAKRRGP 183
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QV
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQV 226
>gi|444521209|gb|ELV13150.1| LIM/homeobox protein Lhx3 [Tupaia chinensis]
Length = 290
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 105/125 (84%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C APLAE+CF+R ++CK+DFFKRFG
Sbjct: 29 IPLCAGCDQHILDRFILKALDRHWHSQCLKCCDCHAPLAERCFSRGESVYCKDDFFKRFG 88
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 89 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 148
Query: 190 AKAKD 194
AK +D
Sbjct: 149 AKQRD 153
>gi|426363578|ref|XP_004048915.1| PREDICTED: LIM/homeobox protein Lhx3 [Gorilla gorilla gorilla]
Length = 304
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 104/127 (81%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 33 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFG 92
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 93 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 152
Query: 190 AKAKDGN 196
AK ++
Sbjct: 153 AKQREAE 159
>gi|195998992|ref|XP_002109364.1| hypothetical protein TRIADDRAFT_20649 [Trichoplax adhaerens]
gi|190587488|gb|EDV27530.1| hypothetical protein TRIADDRAFT_20649 [Trichoplax adhaerens]
Length = 208
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 129/196 (65%), Gaps = 5/196 (2%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+A KC GC LI D+F+LKV + WH CL+C++C PL++ C+ ++ L+CKED+ K
Sbjct: 6 LAIKQKCTGCNQLIQDKFLLKVADDLWHEDCLRCYKCTQPLSKSCYIKDHKLYCKEDYDK 65
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFG KC GC +GI P ++V R YH+NC C++C+RQ GD++Y+ ++ K +CK D
Sbjct: 66 RFGRKCQGCNLGILPDEMVYRLHGSCYHINCLLCIVCSRQFKVGDKYYISDEGKPICKED 125
Query: 187 YEAAKAKDGNCLDGDQPN-KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
Y+ A PN KRPRT+IT +QL+ L Y P+P+R RE ++ GLD+
Sbjct: 126 YDVAIMY----FQLHHPNLKRPRTSITQQQLKMLNSVYRIKPRPSRITREMIATKVGLDL 181
Query: 246 RVVQVWFQNRRAKEKR 261
RVVQVWFQN+RAK+KR
Sbjct: 182 RVVQVWFQNKRAKDKR 197
>gi|268567057|ref|XP_002639879.1| C. briggsae CBR-LIN-11 protein [Caenorhabditis briggsae]
Length = 411
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 141/235 (60%), Gaps = 43/235 (18%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C ILDR++ VL + WH CL+C +C AP++ CF+++GL+ CK D+ +R+G +
Sbjct: 74 ECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSKDGLILCKTDYSRRYGHR 133
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME ++ C+ D++ A
Sbjct: 134 CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRM-CQNDFQTAT 192
Query: 192 AK------------------------------------DGNC----LDGDQPNKR--PRT 209
DG+C D KR PRT
Sbjct: 193 KTSTPTSMHRPISNGSECNSDIEEDNVDACDEGGLDDVDGDCGKDNSDDSNSAKRRGPRT 252
Query: 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
TI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 253 TIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRMKQ 307
>gi|339236721|ref|XP_003379915.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
gi|316977365|gb|EFV60475.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
Length = 262
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 122/167 (73%), Gaps = 11/167 (6%)
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKP 185
RFGTKC+GC+ GI P VVR+A D VYHL CF C +C R++ TGDEFYLM D K+VCK
Sbjct: 4 RFGTKCSGCKEGILPQAVVRKAHDHVYHLQCFKCAVCEREMKTGDEFYLMPSDGKIVCKG 63
Query: 186 DYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
D++ K KD D NKRPRTTI+AKQLETLK AY SPKPARHVRE+L+ DTGLDM
Sbjct: 64 DFDITKNKDF-----DNSNKRPRTTISAKQLETLKHAYQLSPKPARHVRERLALDTGLDM 118
Query: 246 RVVQVWFQNRRAKEKRLKKDAGR-TRW----SQYFRSMKGGTSPKDE 287
RVVQVWFQNRRAKEKR+KKD R ++W S+ R GT+ +E
Sbjct: 119 RVVQVWFQNRRAKEKRMKKDNNRGSKWGHCLSKTGRQSSSGTTFNNE 165
>gi|348551170|ref|XP_003461403.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Cavia porcellus]
Length = 404
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 147/253 (58%), Gaps = 46/253 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDG------NCLD-----------GDQPNKR--------------------------PR 208
K+G +C D D P + PR
Sbjct: 125 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 184
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVV-QVWFQNRRAKEKRLKK-DA 266
TTI AKQLETLK A+ +P P R + + D L + QVWFQNRR+KE+R+K+ A
Sbjct: 185 TTIKAKQLETLKAAFAATPSPRAIPRGEGAPDPELTAPPLSQVWFQNRRSKERRMKQLSA 244
Query: 267 GRTRWSQYFRSMK 279
R +FRS +
Sbjct: 245 LGARRHAFFRSPR 257
>gi|190613352|pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 102/123 (82%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRF
Sbjct: 59 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF 118
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
GTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 119 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
Query: 189 AAK 191
AK
Sbjct: 179 TAK 181
>gi|334853818|gb|AEH05849.1| Lhx3, partial [Capra hircus]
gi|334853820|gb|AEH05850.1| Lhx3, partial [Capra hircus]
Length = 124
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/124 (71%), Positives = 104/124 (83%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C APLAE+CF+R ++CK+DFFKRFG
Sbjct: 1 IPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAERCFSRGESVYCKDDFFKRFG 60
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 61 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 120
Query: 190 AKAK 193
AK +
Sbjct: 121 AKQR 124
>gi|196049633|pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
gi|196049634|pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/122 (72%), Positives = 102/122 (83%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CLKC +C PLAE+CF+R ++CK+DFFKRFG
Sbjct: 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG 65
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK DYE
Sbjct: 66 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 125
Query: 190 AK 191
AK
Sbjct: 126 AK 127
>gi|410979495|ref|XP_003996119.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Felis
catus]
Length = 309
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 102/124 (82%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
IP C GC ILDRFILK L+R WH++CL+C +C APLAE+CF+R ++CK+DFFKRFG
Sbjct: 31 IPLCAGCDQHILDRFILKALDRHWHSKCLRCSDCHAPLAERCFSRGESVYCKDDFFKRFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEF MED +LVCK DYE
Sbjct: 91 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFSFMEDSRLVCKADYET 150
Query: 190 AKAK 193
AK +
Sbjct: 151 AKQR 154
>gi|295798064|emb|CBL87029.1| lim3 protein [Tribolium castaneum]
Length = 223
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/109 (88%), Positives = 99/109 (90%), Gaps = 8/109 (7%)
Query: 197 CLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
CLDGDQPNKRPRTTITAKQLETLK AYN SPKPARHVREQLSQDTGLDMRVVQVWFQNRR
Sbjct: 1 CLDGDQPNKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 60
Query: 257 AKEKRLKKDAGRTRWSQYFRSMKGGTSP-------KDELKIDLDSNFSH 298
AKEKRLKKDAGRTRWSQYFRSMKGG+SP KDE+K+DLDS FSH
Sbjct: 61 AKEKRLKKDAGRTRWSQYFRSMKGGSSPRHDKLLDKDEMKVDLDS-FSH 108
>gi|190361014|gb|ACE76893.1| Lim1, partial [Emys orbicularis]
Length = 261
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 133/217 (61%), Gaps = 46/217 (21%)
Query: 107 LAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQ 166
L EKCF+R G L+CK DFF+ FGTKCAGC GI P+ +VRRA+ V+HLNCF C+MC +Q
Sbjct: 4 LTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSNLVRRARSKVFHLNCFTCMMCNKQ 63
Query: 167 LNTGDEFYLMEDRKLVCKPDY--------------------------------------E 188
L+TG+E Y++++ K VCK DY E
Sbjct: 64 LSTGEELYIIDENKFVCKEDYLNNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSE 123
Query: 189 AAKAKD---GNCLDGDQ----PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+A D GN + DQ + PRTTI AKQLETLK A+ +PKP RH+REQL+Q+T
Sbjct: 124 SANVSDKEAGNNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQET 183
Query: 242 GLDMRVVQVWFQNRRAKEKRLKK-DAGRTRWSQYFRS 277
GL+MRV+QVWFQNRR+KE+R+K+ A R +FRS
Sbjct: 184 GLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRS 220
>gi|432094974|gb|ELK26382.1| LIM/homeobox protein Lhx5 [Myotis davidii]
Length = 315
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 145/250 (58%), Gaps = 63/250 (25%)
Query: 91 RTWH---ARCLKCHECGAPL---------------AEKCFARNGLLFCKEDFFKRFGTKC 132
R+WH R K H +PL +EKCF+R G L+CK DFF+RFGTKC
Sbjct: 9 RSWHNRIPRSPKGHRGLSPLYDKRSRRGAGGLTNLSEKCFSREGKLYCKNDFFRRFGTKC 68
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 69 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 128
Query: 192 AKDG------NCLD-----------GDQPN--------------------------KRPR 208
K+G +C D D P + PR
Sbjct: 129 LKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPR 188
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-DAG 267
TTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 189 TTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSAL 248
Query: 268 RTRWSQYFRS 277
R +FRS
Sbjct: 249 GARRHAFFRS 258
>gi|339961229|pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
gi|339961230|pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 102/125 (81%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+ IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFK
Sbjct: 3 MQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK 62
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKC C+ GIPPTQVVR+AQD VYHL+CFAC++C RQL TGDEFYLMED +LVCK D
Sbjct: 63 RFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 122
Query: 187 YEAAK 191
YE AK
Sbjct: 123 YETAK 127
>gi|449282069|gb|EMC88978.1| LIM/homeobox protein Lhx1 [Columba livia]
Length = 400
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 131/223 (58%), Gaps = 51/223 (22%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFR------ 57
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 58 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLNNSN 117
Query: 188 ---------------------------------EAAKAKD---GNCLDGDQ----PNKRP 207
E+A D G+ + DQ + P
Sbjct: 118 TAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGAKRRGP 177
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
RTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QV
Sbjct: 178 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQV 220
>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Strongylocentrotus purpuratus]
Length = 387
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 123/201 (61%), Gaps = 8/201 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DR+++KV++ WH +CL+C C L+ CFAR+ L+CK D+ K FGTKC
Sbjct: 33 CAGCQRAIDDRYLMKVMDHCWHEQCLQCSVCRIRLSHSCFARDRKLYCKLDYEKLFGTKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
C IP +++V RA VYHL CF CV C +QL GDEF L E+R L CK DY
Sbjct: 93 NACFQSIPSSELVMRALSNVYHLRCFTCVTCDQQLKKGDEFVLKENR-LYCKEDYTKEHT 151
Query: 193 KDGNCL-------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
D + DG + KRPRT +T Q K ++ S KP R VRE L+++TGL +
Sbjct: 152 VDTQKVSSKSSSQDGRKGPKRPRTILTTSQRRAFKASFEVSSKPCRKVRETLAKETGLSV 211
Query: 246 RVVQVWFQNRRAKEKRLKKDA 266
RVVQVWFQN+RAK K+L + +
Sbjct: 212 RVVQVWFQNQRAKMKKLARKS 232
>gi|242007294|ref|XP_002424476.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
gi|212507894|gb|EEB11738.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
Length = 389
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 142/235 (60%), Gaps = 21/235 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR++++V + +WH CL C+ CG L+ C+ R+G L+CK+D+ + FG KC
Sbjct: 29 CEGCGQKIHDRYLMRVGDTSWHEHCLSCNVCGVLLSHSCYTRSGKLYCKQDYDRIFGVKC 88
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-- 190
+ C I P ++V RAQ LV+HL CF C+ C + L G++F +++ +L C+PD+E
Sbjct: 89 SRCGDRILPHELVMRAQHLVFHLQCFCCIACGQHLQKGEQF-VLKAGQLFCRPDFEKEIY 147
Query: 191 --KAKDGNCL---------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ G L DG + KRPRT +T+ Q K ++ SPKP R VRE L++
Sbjct: 148 LLHSPTGEDLDLDDGIRHRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAK 207
Query: 240 DTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDS 294
+TGL +RVVQVWFQN+RAK K++++ A + + KG KDE I ++S
Sbjct: 208 ETGLSVRVVQVWFQNQRAKVKKIQRKAKQEQ-------DKGLDKDKDEKSIKVES 255
>gi|94039292|dbj|BAE93505.1| LIM homeobox protein 4 [Bos taurus]
Length = 181
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 101/128 (78%), Gaps = 7/128 (5%)
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMA 222
C RQL TGDEFYLMED +LVCK DYE AK D D + KRPRTTITAKQLETLK A
Sbjct: 1 CNRQLATGDEFYLMEDGRLVCKEDYETAKQND----DSEAGAKRPRTTITAKQLETLKNA 56
Query: 223 YNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK--- 279
Y SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW Q+++S+K
Sbjct: 57 YKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSR 116
Query: 280 GGTSPKDE 287
GG+ + E
Sbjct: 117 GGSKQEKE 124
>gi|443701940|gb|ELU00130.1| hypothetical protein CAPTEDRAFT_97456 [Capitella teleta]
Length = 269
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 131/242 (54%), Gaps = 47/242 (19%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF + VL++ WH C++C +CG L + C+ R L+CK DFFKRF T+C
Sbjct: 5 CIGCGSEISDRFFMTVLDQAWHTHCVQCADCGEKLIDSCYTREKKLYCKSDFFKRFATQC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
C+ + P+ +VRRA D VYHL CF C++C RQL+TG+E+++++ + +CK DY +
Sbjct: 65 GVCKRDLSPSDLVRRALDRVYHLQCFTCLVCRRQLDTGEEYFVLDTTRFMCKKDYMEIEG 124
Query: 193 KDGN-----------CLDGDQP------------------------------------NK 205
K G C G +P
Sbjct: 125 KCGKPSGRAPGSCPACGPGTRPPGAPQDSEDDDATTQVSSAEQDAPESNGGDGTPGSKKS 184
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265
RPRT I QL+ L A+ + P + RE L + TGL MRV+QVWFQN+R+KE++++K+
Sbjct: 185 RPRTVIKDDQLKVLHAAFTANHLPTKKEREDLVERTGLSMRVIQVWFQNKRSKERKMQKE 244
Query: 266 AG 267
+G
Sbjct: 245 SG 246
>gi|301616969|ref|XP_002937919.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 393
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 125/224 (55%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C PL C+ R+ LFCK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYFRDRKLFCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ---------------------AKDGNCL--------DGDQPN--KRPRTTITAKQLETLK 220
K G C DG P KRPRT +T +Q K
Sbjct: 175 LLSSGSPDDSDSVKSDDEEGDVKPGKCHVNQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 278
>gi|301616967|ref|XP_002937918.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 400
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 125/224 (55%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C PL C+ R+ LFCK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYFRDRKLFCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ---------------------AKDGNCL--------DGDQPN--KRPRTTITAKQLETLK 220
K G C DG P KRPRT +T +Q K
Sbjct: 175 LLSSGSPDDSDSVKSDDEEGDVKPGKCHVNQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 278
>gi|332220030|ref|XP_003259160.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Nomascus leucogenys]
Length = 368
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 139/261 (53%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +ILDRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIDTSASFSSLLGRAVSPKSV-------CEGCQRVILDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGTAEEGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
Length = 352
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 122/211 (57%), Gaps = 20/211 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR++L+V+ +WH RCL+C C APL CF +NG L CK D+ + + +C
Sbjct: 15 CCGCGLTIEDRYLLRVMGNSWHERCLQCDFCRAPLTRSCFVKNGRLLCKLDYDRLYAARC 74
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+ C +P ++V RA V+HL CF CV C QL GD+F +++D +L C+ D+E
Sbjct: 75 SACVQTVPSNELVMRAVGHVFHLQCFVCVACGHQLQRGDQF-VVKDGQLFCRADFEREFL 133
Query: 189 ---------------AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
+ D N D + KRPRT +T Q K ++ +PKP R +
Sbjct: 134 MQHPDWCSGYSTKSDEESSIDENDADNQKGPKRPRTILTTSQRRKFKASFEVNPKPCRKI 193
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
RE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 194 RESLASETGLSVRVVQVWFQNQRAKMKKLAR 224
>gi|395825137|ref|XP_003785798.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Otolemur
garnettii]
Length = 382
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 139/261 (53%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +ILDRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVILDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGAAEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|224058880|ref|XP_002190501.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Taeniopygia
guttata]
Length = 379
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 131/229 (57%), Gaps = 38/229 (16%)
Query: 68 ASIPK--CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
A+ PK C GC +ILDRF+L++ + WH +C++C C PL CF R+ L+CK D+
Sbjct: 26 AATPKSVCEGCQRVILDRFLLRLNDSLWHEQCVQCASCKEPLQTTCFYRDKKLYCKLDYE 85
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
K F KCAGC I P+++V RAQ VYHL+CF C +C R+L GDEF L E +L+CK
Sbjct: 86 KLFAVKCAGCLEPIAPSELVMRAQKSVYHLHCFCCCVCERRLQKGDEFVLKEG-QLLCKG 144
Query: 186 DYEAAK--------------------------------AKDGNCLDGDQPNKRPRTTITA 213
DYE + A+DG D +P KRPRT +T
Sbjct: 145 DYEKERELLSLVSPALSDSGKSDDEDSICKLGQASGKGAEDGK--DHKRP-KRPRTILTT 201
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
+Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 202 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 250
>gi|403272543|ref|XP_003928115.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Saimiri boliviensis boliviensis]
gi|403272545|ref|XP_003928116.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Saimiri boliviensis boliviensis]
Length = 382
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 139/261 (53%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +ILDRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIDTSASFSSLLGRAVSPKSV-------CEGCQRVILDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGTAEEGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|28893581|ref|NP_796372.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|291327513|ref|NP_001167540.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|109019319|ref|XP_001084612.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Macaca mulatta]
gi|109019321|ref|XP_001084727.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3
[Macaca mulatta]
gi|114561083|ref|XP_001174539.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
troglodytes]
gi|114561085|ref|XP_001174542.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3 [Pan
troglodytes]
gi|296229940|ref|XP_002760489.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Callithrix
jacchus]
gi|397508364|ref|XP_003824628.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1 [Pan
paniscus]
gi|397508366|ref|XP_003824629.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
paniscus]
gi|402858034|ref|XP_003893535.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Papio anubis]
gi|402858036|ref|XP_003893536.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Papio anubis]
gi|426332555|ref|XP_004027869.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Gorilla gorilla gorilla]
gi|426332557|ref|XP_004027870.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Gorilla gorilla gorilla]
gi|27923801|sp|Q8TE12.1|LMX1A_HUMAN RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|19879681|gb|AAL82892.1| LIM homeobox transcription factor 1 alpha [Homo sapiens]
gi|119611150|gb|EAW90744.1| LIM homeobox transcription factor 1, alpha, isoform CRA_b [Homo
sapiens]
gi|182887815|gb|AAI60062.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|193785405|dbj|BAG54558.1| unnamed protein product [Homo sapiens]
gi|208966672|dbj|BAG73350.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|355558990|gb|EHH15770.1| hypothetical protein EGK_01906 [Macaca mulatta]
gi|355746154|gb|EHH50779.1| hypothetical protein EGM_01656 [Macaca fascicularis]
Length = 382
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 139/261 (53%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +ILDRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIDTSASFSSLLGRAVSPKSV-------CEGCQRVILDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGTAEEGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
carolinensis]
Length = 381
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 32/220 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V ER+WH C+KC C PL+ C+ RN L+CK D+ K F TKC
Sbjct: 41 CAGCNTPISDRFLLRVNERSWHEGCVKCAACLQPLSGTCYCRNRQLYCKHDYEKLFQTKC 100
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
+GC + P++ + R + VYH++CF+C C R+L GDEF L E +L+C+ DY
Sbjct: 101 SGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFVLKEG-QLLCRSDYEKERE 159
Query: 188 ----------EAAKAKDGNCLDGDQPN-------------KRPRTTITAKQLETLKMAYN 224
E+ K++D DG+ P+ KRPRT +T +Q K ++
Sbjct: 160 MLSAISPAPTESVKSEDE---DGNHPHGKTGEEGKDHKRSKRPRTILTTQQRRAFKASFE 216
Query: 225 TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K++ +
Sbjct: 217 VSSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKIAR 256
>gi|432874756|ref|XP_004072577.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
latipes]
Length = 398
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 121/221 (54%), Gaps = 32/221 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V + +WH CL+C C PL C+ R L+CK D+ + F TKC
Sbjct: 56 CEGCQRPISDRFLMRVNDSSWHEECLQCAVCQQPLTTSCYLRERKLYCKHDYQQLFATKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHLNCF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEG-QLLCKVDYEREKD 174
Query: 192 ----------------------------AKDGNCLDGDQPN--KRPRTTITAKQLETLKM 221
G DG P KRPRT +T +Q K
Sbjct: 175 LLSSVSPDDSDSEKSDDEELDIKPEKGIGSQGKGDDGKDPRRPKRPRTILTTQQRRAFKA 234
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 235 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 275
>gi|348516128|ref|XP_003445591.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Oreochromis niloticus]
Length = 399
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 121/221 (54%), Gaps = 32/221 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V + +WH CL+C C PL C+ R L+CK D+ + F TKC
Sbjct: 56 CEGCQRPISDRFLMRVNDSSWHEECLQCTVCQQPLTNSCYFRERKLYCKHDYQQLFATKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHLNCF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEG-QLLCKIDYEREKD 174
Query: 192 ----------------------------AKDGNCLDGDQPN--KRPRTTITAKQLETLKM 221
G DG P KRPRT +T +Q K
Sbjct: 175 LLSSVSPDDSDSEKSDDEELDIKPEKGIGSQGKGDDGKDPRRPKRPRTILTTQQRRAFKA 234
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 235 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 275
>gi|341889206|gb|EGT45141.1| CBN-LIN-11 protein [Caenorhabditis brenneri]
Length = 372
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 44/227 (19%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
I+ +C C ILDR++ VL + WH CL+C +C AP++ CF+++GL+ CK D+ +
Sbjct: 69 ISGGNECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSKDGLILCKSDYSR 128
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
R+G +CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME + +C+ D
Sbjct: 129 RYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQND 188
Query: 187 YEAAK------------------------------------------AKDGNCLDGDQPN 204
++ A KD N D +
Sbjct: 189 FQTATKTSTPTSMHRPVSNGSECNSDMEEDNVDACDDVGLDDVDGDCGKD-NSDDSNSAK 247
Query: 205 KR-PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
+R PRTTI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QV
Sbjct: 248 RRGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQV 294
>gi|340711972|ref|XP_003394539.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
terrestris]
Length = 402
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 11/204 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I+D+++++V R +H CL C C PL CF R L+C+ D+ + FG KC
Sbjct: 58 CAGCGRTIVDKYVMQVAGRNYHEECLSCAACATPLTHSCFIRELKLYCRNDYERIFGVKC 117
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-- 190
A C I + V RA LV+H+ CFAC MC + L G +++L + + +C+ DYE
Sbjct: 118 ARCMEKISCSDFVLRAPGLVFHVECFACCMCGQPLLPGTQYFLRQGQP-ICRRDYEHELY 176
Query: 191 --KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+D + LD ++P KRPRT +T+ Q K A+ SPKP R VRE L+++TG
Sbjct: 177 LNSPQDDDLLDENRPRDGRRGPKRPRTILTSAQRRQFKAAFEVSPKPCRKVREALAKETG 236
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDA 266
L +RVVQVWFQN+RAK K+L++ A
Sbjct: 237 LSVRVVQVWFQNQRAKMKKLQRKA 260
>gi|326924822|ref|XP_003208624.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha-like [Meleagris gallopavo]
Length = 367
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 131/227 (57%), Gaps = 34/227 (14%)
Query: 68 ASIPK--CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
A+ P+ C GC +I DRF+L++ + WH RC++C C PL CF R+ L+CK D+
Sbjct: 15 AATPRSVCEGCQRVIADRFLLRLNDSLWHERCVQCTSCKEPLHTTCFYRDKKLYCKLDYE 74
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
K F KCAGC I P+++V RAQ VYHL+CF C +C R+L GDEF L E +L+CK
Sbjct: 75 KLFAVKCAGCLESIAPSELVMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEG-QLLCKG 133
Query: 186 DYE---------------AAKAKDGNCL---------------DGDQPNKRPRTTITAKQ 215
DYE + K+ D + + D +P KRPRT +T +Q
Sbjct: 134 DYEKERELLSLVSPALSDSGKSDDEDSVCKMGPASAKGAEEGKDHKRP-KRPRTILTTQQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 193 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 239
>gi|383792181|ref|NP_001244317.1| LIM homeobox transcription factor 1-alpha [Gallus gallus]
Length = 380
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 131/227 (57%), Gaps = 34/227 (14%)
Query: 68 ASIPK--CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
A+ P+ C GC +I DRF+L++ + WH RC++C C PL CF R+ L+CK D+
Sbjct: 28 AATPRSVCEGCQRVIADRFLLRLNDSLWHERCVQCTSCKEPLHTTCFYRDKKLYCKLDYE 87
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
K F KCAGC I P+++V RAQ VYHL+CF C +C R+L GDEF L E +L+CK
Sbjct: 88 KLFAVKCAGCLESIAPSELVMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEG-QLLCKG 146
Query: 186 DYE---------------AAKAKDGNCL---------------DGDQPNKRPRTTITAKQ 215
DYE + K+ D + + D +P KRPRT +T +Q
Sbjct: 147 DYEKERELLSLVSPALSDSGKSDDEDSVCKMGPASAKGAEEGKDHKRP-KRPRTILTTQQ 205
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 206 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 252
>gi|62461837|gb|AAX83055.1| LIM homeodomain protein [Danio rerio]
Length = 375
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 122/221 (55%), Gaps = 32/221 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C PL C+ R L+CK D+ + F TKC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAVCQQPLTTSCYFRERKLYCKYDYQQLFATKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+GC I PT+ V RA + VYHLNCF C +C RQL GDEF L +D +L+CK DYE K
Sbjct: 93 SGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVL-KDGQLLCKSDYEREKD 151
Query: 193 KDGNCLDGDQPN-------------------------------KRPRTTITAKQLETLKM 221
G+ D + KRPRT +T +Q K
Sbjct: 152 LLGSVSPDDSDSEKSEDEELDIKPEKGSGGTGKGDDGKDPRRPKRPRTILTTQQRRAFKA 211
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 212 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 252
>gi|148227168|ref|NP_001083902.1| LIM homeobox transcription factor 1-beta.1 [Xenopus laevis]
gi|82216057|sp|Q8UVR3.1|LMX1B_XENLA RecName: Full=LIM homeobox transcription factor 1-beta.1; AltName:
Full=LIM homeobox protein 1b; Short=Xlmx1b
gi|16974694|gb|AAL32444.1|AF414086_1 LIM homeobox protein 1b [Xenopus laevis]
Length = 400
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 126/224 (56%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C PL C+ R+ LFCK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYFRDRKLFCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ----------------AKDGNCL-------------DGDQPN--KRPRTTITAKQLETLK 220
++G+ DG P KRPRT +T +Q K
Sbjct: 175 LLSSGSPDDSDSVKSDDEEGDVKPGKGRVNQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKIKKLAR 278
>gi|309243111|ref|NP_001020338.2| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|48375211|gb|AAT42258.1| LIM homeodomain protein Lmx1b.1 [Danio rerio]
gi|190337176|gb|AAI62952.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|190338183|gb|AAI62932.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
Length = 375
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 122/221 (55%), Gaps = 32/221 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C PL C+ R L+CK D+ + F TKC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAVCQQPLTTSCYFRERKLYCKYDYQQLFATKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+GC I PT+ V RA + VYHLNCF C +C RQL GDEF L +D +L+CK DYE K
Sbjct: 93 SGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVL-KDGQLLCKSDYEREKD 151
Query: 193 KDGNCLDGDQPN-------------------------------KRPRTTITAKQLETLKM 221
G+ D + KRPRT +T +Q K
Sbjct: 152 LLGSVSPDDSDSEKSEDEELDIKPEKGSGGTGKGDDGKDPRRPKRPRTILTTQQRRAFKA 211
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 212 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 252
>gi|350402518|ref|XP_003486514.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Bombus
impatiens]
Length = 402
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 11/204 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I+D+++++V R +H CL C C PL CF R L+C+ D+ + FG KC
Sbjct: 58 CAGCGRTIVDKYVMQVSGRNYHEECLSCAACATPLTHSCFIRELKLYCRNDYERIFGVKC 117
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-- 190
A C I + V RA LV+H+ CFAC MC + L G +++L + + +C+ DYE
Sbjct: 118 ARCMEKISCSDFVLRAPGLVFHVECFACCMCGQPLLPGTQYFLRQGQP-ICRRDYEHELY 176
Query: 191 --KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+D + LD ++P KRPRT +T+ Q K A+ SPKP R VRE L+++TG
Sbjct: 177 LNSPQDDDLLDENRPRDGRRGPKRPRTILTSAQRRQFKAAFEVSPKPCRKVREALAKETG 236
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDA 266
L +RVVQVWFQN+RAK K+L++ A
Sbjct: 237 LSVRVVQVWFQNQRAKMKKLQRKA 260
>gi|300797454|ref|NP_001178254.1| LIM homeobox transcription factor 1-alpha [Bos taurus]
gi|296489924|tpg|DAA32037.1| TPA: LIM homeobox transcription factor 1 alpha-like [Bos taurus]
Length = 382
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 136/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE------------------------ 188
YHL+CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 189 -------AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
A K + D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGASEDSKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|426217051|ref|XP_004002767.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Ovis aries]
Length = 382
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 136/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE------------------------ 188
YHL+CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 189 -------AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
A K + D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGASEDSKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|270002859|gb|EEZ99306.1| LIM homeobox transcription factor 1, beta [Tribolium castaneum]
Length = 388
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 15/208 (7%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR++++V + +WH CL C CG LA C+ RN L+CK D+ + FG KC
Sbjct: 44 CEGCGQKIHDRYLMRVADASWHEHCLTCSICGVQLAHSCYTRNTKLYCKADYDRIFGVKC 103
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+ C + P ++V RAQ V+HL CF CV+C + L G++F L +L C+ D+E
Sbjct: 104 SRCGDRLLPHEMVMRAQQHVFHLPCFVCVVCCQPLQKGEQFVLRAG-QLFCRQDFEKEMY 162
Query: 189 ---AAKAKDGNCL-------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
A + D + L DG + KRPRT +T+ Q K ++ SPKP R VRE L+
Sbjct: 163 LMQQASSGDDDMLDENSRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALA 222
Query: 239 QDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
++TGL +RVVQVWFQN+RAK K++++ A
Sbjct: 223 KETGLSVRVVQVWFQNQRAKMKKIQRKA 250
>gi|91077954|ref|XP_967240.1| PREDICTED: similar to CG32105 CG32105-PB [Tribolium castaneum]
Length = 472
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 15/208 (7%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR++++V + +WH CL C CG LA C+ RN L+CK D+ + FG KC
Sbjct: 128 CEGCGQKIHDRYLMRVADASWHEHCLTCSICGVQLAHSCYTRNTKLYCKADYDRIFGVKC 187
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+ C + P ++V RAQ V+HL CF CV+C + L G++F L +L C+ D+E
Sbjct: 188 SRCGDRLLPHEMVMRAQQHVFHLPCFVCVVCCQPLQKGEQFVLRAG-QLFCRQDFEKEMY 246
Query: 189 ---AAKAKDGNCL-------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
A + D + L DG + KRPRT +T+ Q K ++ SPKP R VRE L+
Sbjct: 247 LMQQASSGDDDMLDENSRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALA 306
Query: 239 QDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
++TGL +RVVQVWFQN+RAK K++++ A
Sbjct: 307 KETGLSVRVVQVWFQNQRAKMKKIQRKA 334
>gi|405971990|gb|EKC36789.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
Length = 319
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 15/220 (6%)
Query: 63 VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKE 122
+ MP C GCG I D+++ K+ + WH CL+C C L+ C+++NG L+CK
Sbjct: 5 IKMPSIHEETCAGCGYPIRDKYLFKINDNVWHENCLQCAICRLSLSGTCYSKNGHLYCKS 64
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+ K F +C+GC I P ++VRR YHL CF CV C L G+EFY+ D ++
Sbjct: 65 DYDKLFRGRCSGCGFSINPHELVRRVYSNTYHLPCFRCVECGHVLQDGNEFYI-RDGQIF 123
Query: 183 CKPDY--------------EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPK 228
C+ D+ E + + + LD D+ KRPRT +T Q K A+ +PK
Sbjct: 124 CRYDHDKEFHIPSFSPKVDEDSDSYEDFDLDVDRQAKRPRTILTTSQRRKFKQAFEANPK 183
Query: 229 PARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 268
P R VREQL+ +TGL +RVVQVWFQN+RAK K+ + G+
Sbjct: 184 PCRKVREQLAAETGLTIRVVQVWFQNQRAKVKKTSRKGGK 223
>gi|307204532|gb|EFN83212.1| LIM homeobox transcription factor 1 beta [Harpegnathos saltator]
Length = 402
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 124/204 (60%), Gaps = 11/204 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I D+++++V ER +H CL C CGA L+ CF R+ L+C+ D+ K FG KC
Sbjct: 59 CAGCGRTIADKYVMRVAERNYHEECLSCTACGAMLSHSCFIRDLKLYCRSDYEKIFGVKC 118
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-- 190
A C I + +V R LV+H+ CF C MC + L G F L + + +C+ D+E
Sbjct: 119 ARCMEKISCSDLVMRVASLVFHVECFMCCMCGQPLPRGAHFILRQGQP-ICRRDFEHELY 177
Query: 191 --KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+D + LD ++P KRPRT +T+ Q K ++ SPKP R VRE L++DTG
Sbjct: 178 LNSPQDDDLLDENRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDTG 237
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDA 266
L +RVVQVWFQN+RAK K+L++ A
Sbjct: 238 LSVRVVQVWFQNQRAKMKKLQRKA 261
>gi|348565813|ref|XP_003468697.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Cavia
porcellus]
Length = 382
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 138/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSSQGAGKGTPEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|345797790|ref|XP_851352.2| PREDICTED: LIM homeobox transcription factor 1-alpha [Canis lupus
familiaris]
Length = 382
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 138/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGAAEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|291397514|ref|XP_002715925.1| PREDICTED: LIM homeobox transcription factor 1 alpha-like
[Oryctolagus cuniculus]
Length = 382
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 138/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGTGKGAAEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|383861320|ref|XP_003706134.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Megachile
rotundata]
Length = 402
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 11/204 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I D+++++V R +H CL C C APL + CF R +C+ D+ + FG KC
Sbjct: 58 CAGCGRTISDKYVMQVAGRNYHEECLSCAACAAPLTQSCFIRELKFYCRTDYERIFGVKC 117
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-- 190
A C I + V R LV+H+ CFAC MC + L G +++L + + +C+ DYE
Sbjct: 118 ARCMEKISCSDFVLRTPGLVFHVECFACCMCGQPLPPGTQYFLRQGQP-ICRRDYEHELY 176
Query: 191 --KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+D + LD ++P KRPRT +T+ Q K ++ SPKP R VRE L++DTG
Sbjct: 177 LNSPQDDDLLDENRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDTG 236
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDA 266
L +RVVQVWFQN+RAK K+L++ A
Sbjct: 237 LSVRVVQVWFQNQRAKMKKLQRKA 260
>gi|410986575|ref|XP_003999585.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Felis catus]
Length = 382
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 138/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSVHGAGKGAAEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|395530698|ref|XP_003767425.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Sarcophilus
harrisii]
Length = 382
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 139/261 (53%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVNPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D +
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPVASDSGKSDDEDS 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKAGHGTGKGVAEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|311253923|ref|XP_003125689.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Sus
scrofa]
Length = 382
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 138/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGAPEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|351696220|gb|EHA99138.1| LIM homeobox transcription factor 1-alpha [Heterocephalus glaber]
Length = 382
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 138/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAQGTGKGATEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|301756737|ref|XP_002914217.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Ailuropoda melanoleuca]
Length = 382
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 138/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC + P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAVAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGATEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|126306172|ref|XP_001363612.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Monodelphis
domestica]
Length = 382
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 138/263 (52%), Gaps = 44/263 (16%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVNPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK--------------------- 191
YHL+CF C +C RQL GDEF L E +L+CK DYE +
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPVASDSGKSDDDDS 173
Query: 192 ------------AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
A+DG D +P KRPRT +T +Q K ++ S KP R VRE L+
Sbjct: 174 LCKAGHGAGKGVAEDGK--DHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAA 230
Query: 240 DTGLDMRVVQVWFQNRRAKEKRL 262
+TGL +RVVQVWFQN+RAK K+L
Sbjct: 231 ETGLSVRVVQVWFQNQRAKMKKL 253
>gi|334311509|ref|XP_001366137.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Monodelphis domestica]
Length = 394
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ----------------AKDGNCL-------------DGDQPN--KRPRTTITAKQLETLK 220
+DG+ DG P KRPRT +T +Q K
Sbjct: 175 LLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 278
>gi|395505734|ref|XP_003757194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Sarcophilus harrisii]
Length = 394
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ----------------AKDGNCL-------------DGDQPN--KRPRTTITAKQLETLK 220
+DG+ DG P KRPRT +T +Q K
Sbjct: 175 LLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 278
>gi|334311511|ref|XP_003339631.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Monodelphis domestica]
Length = 401
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ----------------AKDGNCL-------------DGDQPN--KRPRTTITAKQLETLK 220
+DG+ DG P KRPRT +T +Q K
Sbjct: 175 LLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 278
>gi|410922082|ref|XP_003974512.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Takifugu
rubripes]
Length = 375
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 122/221 (55%), Gaps = 33/221 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V + +WH CL+C C PL C+ R L+CK D+ + F TKC
Sbjct: 33 CEGCQRPISDRFLMRVNDSSWHEECLQCTVCQQPLTTSCYFRERKLYCKHDYQQLFATKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHLNCF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEG-QLLCKFDYEREKD 151
Query: 192 ------------------------------AKDGNCLDGDQPNKRPRTTITAKQLETLKM 221
K + D +P KRPRT +T +Q K
Sbjct: 152 LLSSVSPDDSDSEKSDDEELDIKQEKGISQGKGDDSKDSRRP-KRPRTILTTQQRRAFKA 210
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 211 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 251
>gi|395505738|ref|XP_003757196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Sarcophilus harrisii]
Length = 401
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ----------------AKDGNCL-------------DGDQPN--KRPRTTITAKQLETLK 220
+DG+ DG P KRPRT +T +Q K
Sbjct: 175 LLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 278
>gi|339252326|ref|XP_003371386.1| LIM/homeobox protein Lhx1 [Trichinella spiralis]
gi|316968365|gb|EFV52646.1| LIM/homeobox protein Lhx1 [Trichinella spiralis]
Length = 309
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 60/262 (22%)
Query: 63 VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKE 122
+Y ++ C GC I DR++ V++++WH C+ C C PL ++CF R+GL+FCK
Sbjct: 2 IYSVAVNMTLCAGCKKPIYDRYLYHVMDKSWHGSCIVCEVCQTPLDDRCFTRDGLIFCKT 61
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQ---------------- 166
DF KR+G KC+ C +VR A++ +H++CF C +C ++
Sbjct: 62 DFLKRYGAKCSRCSQNFSRGDLVRYARNKAFHIDCFCCTICQKRLNTGDQLYIINDSTFV 121
Query: 167 ---------------------LNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDG----- 200
L+ DE + C +A +K+ + ++G
Sbjct: 122 CKTDYMKTSHAQKAILEEQDVLSPADEQHFASSSPDSCCSQEQAKLSKNDDSINGISNGS 181
Query: 201 ------------------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TG
Sbjct: 182 NGADLAATTGTSVGTSSNGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETG 241
Query: 243 LDMRVVQVWFQNRRAKEKRLKK 264
L+MRV+QVWFQNRR+KE+R+K+
Sbjct: 242 LNMRVIQVWFQNRRSKERRIKQ 263
>gi|149755774|ref|XP_001493379.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Equus
caballus]
Length = 382
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 123/221 (55%), Gaps = 33/221 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC +I DRF+L++ + WH +C++C C PL CF R+ L+CK D+ K F KC
Sbjct: 35 CEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKC 94
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
GC I P + V RAQ VYHL+CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 95 GGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERE 153
Query: 189 -----------AAKAKDGNCL----------------DGDQPNKRPRTTITAKQLETLKM 221
+ K+ D L D +P KRPRT +T +Q K
Sbjct: 154 LLSLVSPAASDSGKSDDEESLCKSAHGTGKGAAEDGKDHKRP-KRPRTILTTQQRRAFKA 212
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 213 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|395505736|ref|XP_003757195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Sarcophilus harrisii]
Length = 404
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 174
Query: 192 ----------------AKDGNCL-------------DGDQPN--KRPRTTITAKQLETLK 220
+DG+ DG P KRPRT +T +Q K
Sbjct: 175 LLSSVSPDESDSVKSDEEDGDVKPAKGQGGQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 234
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 278
>gi|3348118|gb|AAC27793.1| LIM homeodomain protein [Mus musculus]
Length = 372
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|297271296|ref|XP_002800229.1| PREDICTED: LIM homeobox transcription factor 1-beta [Macaca
mulatta]
Length = 385
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|397473155|ref|XP_003808084.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta [Pan paniscus]
Length = 402
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CXGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|255759880|ref|NP_034855.2| LIM homeobox transcription factor 1-beta [Mus musculus]
gi|109112190|ref|XP_001097412.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Macaca mulatta]
gi|297685370|ref|XP_002820263.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Pongo abelii]
gi|395824199|ref|XP_003785358.1| PREDICTED: LIM homeobox transcription factor 1-beta [Otolemur
garnettii]
gi|403299811|ref|XP_003940668.1| PREDICTED: LIM homeobox transcription factor 1-beta [Saimiri
boliviensis boliviensis]
gi|410979114|ref|XP_003995931.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Felis catus]
gi|341940912|sp|O88609.2|LMX1B_MOUSE RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3132909|gb|AAC39738.1| LIM homeodomain protein LMX1B [Homo sapiens]
gi|47479658|gb|AAH69601.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|85567565|gb|AAI12121.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|109731283|gb|AAI13492.1| LIM homeobox transcription factor 1, beta [Homo sapiens]
gi|111600533|gb|AAI19170.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|116138517|gb|AAI25470.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|119608048|gb|EAW87642.1| LIM homeobox transcription factor 1, beta, isoform CRA_b [Homo
sapiens]
gi|148676655|gb|EDL08602.1| LIM homeobox transcription factor 1 beta [Mus musculus]
gi|312150934|gb|ADQ31979.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|313882992|gb|ADR82982.1| LIM homeobox transcription factor 1, beta (LMX1B) [synthetic
construct]
Length = 372
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|297685372|ref|XP_002820264.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Pongo abelii]
Length = 383
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|149038965|gb|EDL93185.1| LIM homeobox transcription factor 1 beta [Rattus norvegicus]
Length = 372
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|47480835|gb|AAH69588.1| LMX1B protein [Homo sapiens]
Length = 377
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 31 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 90
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 91 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 149
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 150 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 209
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 210 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 254
>gi|219520075|gb|AAI43802.1| LMX1B protein [Homo sapiens]
Length = 383
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|344287033|ref|XP_003415260.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Loxodonta
africana]
Length = 382
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 134/260 (51%), Gaps = 38/260 (14%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C+ C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVLCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE------------------------ 188
YHL+CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEEN 173
Query: 189 ----AAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
A A G DG KRPRT +T +Q K ++ S KP R VRE L+ +TG
Sbjct: 174 LCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETG 233
Query: 243 LDMRVVQVWFQNRRAKEKRL 262
L +RVVQVWFQN+RAK K+L
Sbjct: 234 LSVRVVQVWFQNQRAKMKKL 253
>gi|292494913|ref|NP_001167617.1| LIM homeobox transcription factor 1-beta isoform 3 [Homo sapiens]
Length = 406
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|8247930|sp|O60663.2|LMX1B_HUMAN RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|3335524|gb|AAC27294.1| LIM homeodomain protein [Homo sapiens]
gi|119608047|gb|EAW87641.1| LIM homeobox transcription factor 1, beta, isoform CRA_a [Homo
sapiens]
Length = 379
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|354486854|ref|XP_003505592.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Cricetulus griseus]
Length = 382
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 137/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + SS S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSSIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK + K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGASEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|345805844|ref|XP_003435360.1| PREDICTED: LIM homeobox transcription factor 1-beta [Canis lupus
familiaris]
Length = 487
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 141 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 200
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 201 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 259
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 260 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 319
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 320 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 364
>gi|292494915|ref|NP_001167618.1| LIM homeobox transcription factor 1-beta isoform 2 [Homo sapiens]
gi|301761896|ref|XP_002916366.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 1
[Ailuropoda melanoleuca]
gi|344271902|ref|XP_003407776.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Loxodonta africana]
gi|410979112|ref|XP_003995930.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Felis catus]
gi|281340079|gb|EFB15663.1| hypothetical protein PANDA_004429 [Ailuropoda melanoleuca]
Length = 402
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
Length = 343
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 26/217 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V ER+WH C+KC C PLA C+ RN L+CK D+ K F TKC
Sbjct: 5 CAGCDTPISDRFLLRVNERSWHEGCVKCAVCLQPLAGTCYCRNRQLYCKHDYEKLFQTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+ C I P++++ R + VYH++CF C C R+L GDEF L E +L+C+ DYE K
Sbjct: 65 SSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEG-QLLCRSDYEKEKE 123
Query: 192 ------------------------AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSP 227
K G + +KRPRT +T +Q K ++ S
Sbjct: 124 MLSAISPAPTESVKSEDEDGGHSHGKGGEETKDHKRSKRPRTILTTQQRRAFKASFEVSS 183
Query: 228 KPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
KP R VRE L+ +TGL +RVVQVWFQN+RAK K++ +
Sbjct: 184 KPCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKIAR 220
>gi|344271900|ref|XP_003407775.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Loxodonta africana]
Length = 406
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|385862228|ref|NP_001245353.1| LIM homeobox transcription factor 1-beta [Sus scrofa]
Length = 379
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|417410318|gb|JAA51634.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 391
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 52 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 111
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 112 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 170
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 171 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 230
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 231 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 275
>gi|292494911|ref|NP_002307.2| LIM homeobox transcription factor 1-beta isoform 1 [Homo sapiens]
gi|301761898|ref|XP_002916367.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 2
[Ailuropoda melanoleuca]
gi|344271898|ref|XP_003407774.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Loxodonta africana]
gi|306921455|dbj|BAJ17807.1| LIM homeobox transcription factor 1, beta [synthetic construct]
gi|387541732|gb|AFJ71493.1| LIM homeobox transcription factor 1-beta isoform 1 [Macaca mulatta]
Length = 395
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|281348858|gb|EFB24442.1| hypothetical protein PANDA_002084 [Ailuropoda melanoleuca]
Length = 368
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 123/221 (55%), Gaps = 33/221 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC +I DRF+L++ + WH +C++C C PL CF R+ L+CK D+ K F KC
Sbjct: 21 CEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKC 80
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
GC + P + V RAQ VYHL+CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 81 GGCFEAVAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERE 139
Query: 189 -----------AAKAKDGNCL----------------DGDQPNKRPRTTITAKQLETLKM 221
+ K+ D L D +P KRPRT +T +Q K
Sbjct: 140 LLSLVSPAASDSGKSDDEESLCKSAHGAGKGATEDGKDHKRP-KRPRTILTTQQRRAFKA 198
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 199 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 239
>gi|301761900|ref|XP_002916368.1| PREDICTED: LIM homeobox transcription factor 1-beta-like isoform 3
[Ailuropoda melanoleuca]
Length = 406
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|410979118|ref|XP_003995933.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 4
[Felis catus]
Length = 382
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 151
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 152 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 211
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 256
>gi|410979116|ref|XP_003995932.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Felis catus]
Length = 406
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|417410392|gb|JAA51670.1| Putative lim homeobox transcription factor 1-beta, partial
[Desmodus rotundus]
Length = 398
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 52 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 111
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 112 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 170
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 171 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 230
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 231 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 275
>gi|293345851|ref|XP_001078699.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Rattus norvegicus]
gi|293357761|ref|XP_001069713.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Rattus norvegicus]
Length = 395
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|348569787|ref|XP_003470679.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Cavia
porcellus]
Length = 402
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPTKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 279
>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
kowalevskii]
Length = 441
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 133/259 (51%), Gaps = 52/259 (20%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V+E +WH +CL+C C +PL+ C+ ++ L+CK D+ K FGTKC
Sbjct: 41 CAGCQQPIEDRFLMRVMENSWHEQCLQCSVCQSPLSRSCYFKDRKLYCKGDYEKLFGTKC 100
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA--- 189
GC I ++V RA VYHL CF C++C ++L GDEF ++ D +L CK DYE
Sbjct: 101 NGCLQSITSNELVMRALCNVYHLRCFNCIICNQRLQKGDEF-VVRDNQLFCKVDYEKEYG 159
Query: 190 -------------------------------------------AKAKDGNCLDGDQPNKR 206
+ GN DG + KR
Sbjct: 160 SVQLSSPQGHHSEDDSDVIDEGYLDNSVSNTMDDNSGNDSDTNSTDTKGNGGDGRKGPKR 219
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
PRT +T Q K ++ S KP R VRE L+ DTGL +RVVQVWFQN+RAK K++++
Sbjct: 220 PRTILTTAQRRAFKQSFEVSQKPCRKVRESLAADTGLSVRVVQVWFQNQRAKMKKIQR-- 277
Query: 267 GRTRWSQYFRSMKGGTSPK 285
R Q GTSP+
Sbjct: 278 ---RQLQEQGQNTDGTSPR 293
>gi|547859|sp|Q04650.1|LMX1A_MESAU RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein LMX1A; Short=LIM/homeobox
protein 1; Short=LMX-1
gi|587461|emb|CAA57163.1| lmx1.1 [Mesocricetus auratus]
Length = 382
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 134/260 (51%), Gaps = 38/260 (14%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK + K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE------------------------ 188
YHL+CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 189 ----AAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
A A G DG KRPRT +T +Q K ++ S KP R VRE L+ +TG
Sbjct: 174 LCKSAHGAGKGTSEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETG 233
Query: 243 LDMRVVQVWFQNRRAKEKRL 262
L +RVVQVWFQN+RAK K+L
Sbjct: 234 LSVRVVQVWFQNQRAKMKKL 253
>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
jacchus]
Length = 638
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 292 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 351
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 352 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 410
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 411 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 470
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 471 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 515
>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
Length = 779
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 433 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 492
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 493 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 551
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 552 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 611
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 612 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 656
>gi|17298670|ref|NP_387501.1| LIM homeobox transcription factor 1-alpha [Mus musculus]
gi|27923804|sp|Q9JKU8.1|LMX1A_MOUSE RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|7230571|gb|AAF43012.1|AF226662_1 lim homeodomain-containing transcription factor [Mus musculus]
gi|26336939|dbj|BAC32153.1| unnamed protein product [Mus musculus]
gi|80477081|gb|AAI09168.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
gi|80478204|gb|AAI09169.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 382
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 137/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK + K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGASEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
troglodytes]
Length = 623
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 277 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 336
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 337 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 395
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 396 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 455
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 456 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 500
>gi|158187529|ref|NP_001099437.2| LIM homeobox transcription factor 1 alpha [Rattus norvegicus]
Length = 382
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 137/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK + K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGASEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK K+L
Sbjct: 233 GLSVRVVQVWFQNQRAKMKKL 253
>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
Length = 1019
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 673 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 732
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 733 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 791
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 792 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 851
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 852 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 896
>gi|301609265|ref|XP_002934210.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 380
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 120/219 (54%), Gaps = 28/219 (12%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC +I DRF+L++ + WH +C +C C PL CF R+ L+C+ D+ K F KC
Sbjct: 35 CEGCERVICDRFLLRISDSLWHEQCAQCCTCKEPLESSCFYRDKKLYCRNDYEKLFAVKC 94
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
C I P++ V RAQ VYHL CF C +C RQL GDEF L +D +L+CK DYE
Sbjct: 95 GTCLDTITPSEFVMRAQKNVYHLGCFCCCVCDRQLQKGDEFVL-KDGQLLCKSDYERERD 153
Query: 189 ------AAKAKDGNCLDGDQPN-----------------KRPRTTITAKQLETLKMAYNT 225
A + G D D KRPRT +T +Q K ++
Sbjct: 154 LLSLVSPAASDSGKSEDEDDAGKFDDSKGPEDGKDQKRPKRPRTILTTQQRRAFKASFEV 213
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 214 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 252
>gi|2497672|sp|Q60564.1|LMX1B_MESAU RecName: Full=LIM homeobox transcription factor 1-beta; AltName:
Full=LIM/homeobox protein 1.2; Short=LMX-1.2; AltName:
Full=LIM/homeobox protein LMX1B
gi|1432087|gb|AAB62320.1| LIM-homeodomain protein [Mesocricetus auratus]
Length = 369
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 124/225 (55%), Gaps = 34/225 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 23 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 82
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 83 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 141
Query: 193 -----------------KDGNCL--------------DGDQPN--KRPRTTITAKQLETL 219
+DG+ DG P KRPRT +T +Q
Sbjct: 142 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGGGDDGKDPRRPKRPRTILTTQQRRAF 201
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 202 KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 246
>gi|1145814|gb|AAA84995.1| LIM homeodomain protein [Gallus gallus]
Length = 377
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 122/224 (54%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAVCQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 151
Query: 192 -----------------------------AKDGNCLDGDQPN--KRPRTTITAKQLETLK 220
+ DG P KRPRT +T +Q K
Sbjct: 152 LLSSVSPDDSDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 211
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 255
>gi|328779726|ref|XP_001120677.2| PREDICTED: LIM homeobox transcription factor 1-beta-like [Apis
mellifera]
Length = 402
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I+D+++++V R +H CL C C PL CF R L+C+ D+ + FG KC
Sbjct: 58 CAGCGRTIVDKYVMQVAGRNYHEECLSCAACATPLIHSCFIRELKLYCRTDYERIFGVKC 117
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-- 190
A C I + V R V+H+ CFAC MC + L G ++L + + +C+ DYE
Sbjct: 118 ARCMEKISCSDFVLRTPGSVFHVECFACCMCGQPLPPGAHYFLRQGQP-ICRRDYEHELY 176
Query: 191 --KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+D + LD ++P KRPRT +T+ Q K ++ SPKP R VRE L++DTG
Sbjct: 177 LNSPQDDDLLDDNRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDTG 236
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDA 266
L +RVVQVWFQN+RAK K+L++ A
Sbjct: 237 LSVRVVQVWFQNQRAKMKKLQRKA 260
>gi|45382493|ref|NP_990689.1| LIM/homeobox protein LMX-1.2 [Gallus gallus]
gi|1708855|sp|P53413.1|LMX1B_CHICK RecName: Full=LIM/homeobox protein LMX-1.2; Short=Homeobox protein
LMX-1; Short=LIM/homeobox protein 1; Short=LMX
gi|1050198|gb|AAA96240.1| LIM1 domain bp 172-315, LIM2 domain bp 349-501, homeobox domain bp
655-831 [Gallus gallus]
Length = 377
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 122/224 (54%), Gaps = 33/224 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAVCQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 151
Query: 192 -----------------------------AKDGNCLDGDQPN--KRPRTTITAKQLETLK 220
+ DG P KRPRT +T +Q K
Sbjct: 152 LLSSVSPDDSDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 211
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 212 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 255
>gi|242007292|ref|XP_002424475.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
gi|212507893|gb|EEB11737.1| Insulin gene enhancer protein ISL-2, putative [Pediculus humanus
corporis]
Length = 396
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 144/256 (56%), Gaps = 21/256 (8%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+A + CG C I DR++++V + +H RCL C CG L+ CF R+ L+C+ D+ +
Sbjct: 1 MAELKICGICCGSICDRYLMRVADVFYHERCLLCSVCGIRLSHTCFTRDSKLYCRLDYDR 60
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+ KC GC I ++V +A D V+HL CF CV+C +L GD+F +++ +L C+PD
Sbjct: 61 LYAKKCLGCSERISADELVMKALDSVFHLRCFICVVCGVRLQRGDQF-VIKQGQLFCRPD 119
Query: 187 YE-------AAKAKDGNC---------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPA 230
YE D C DG + KRPRT +T +Q + K ++ SPKP
Sbjct: 120 YEKEVEMLQGYAQGDFTCDDLLPSSRNQDGRRGPKRPRTILTTQQRKAFKASFEVSPKPC 179
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKI 290
R VRE L++DTGL +R+VQVWFQN+RAK K+++K A R + G K +LK
Sbjct: 180 RKVREALAKDTGLSVRIVQVWFQNQRAKMKKIQKKA---RQENKSKDSDSGDDRKPKLK- 235
Query: 291 DLDSNFSHSHGKTAFS 306
+ DSN S+ K + S
Sbjct: 236 EEDSNEILSNKKRSLS 251
>gi|170032117|ref|XP_001843929.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871878|gb|EDS35261.1| lim homeobox protein [Culex quinquefasciatus]
Length = 453
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 135/233 (57%), Gaps = 18/233 (7%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG-TK 131
CG C I DR+I+KV++ ++H CL+C C L CF R+G L+C+ D+ + +G +
Sbjct: 6 CGQCCSPICDRYIMKVVDISYHENCLQCTSCAIRLMHSCFMRDGKLYCRFDYERLYGRNR 65
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--- 188
C GC I ++V RA D V+HL CF CV+C +L GD+ Y+++ +L C+PDYE
Sbjct: 66 CLGCGEKIGADELVMRALDNVFHLKCFICVVCGIRLQKGDQ-YVIKQSQLFCRPDYEKEV 124
Query: 189 ---AAKAKDGNC--------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
D C +DG + KRPRT +T +Q K ++ SPKP R +RE L
Sbjct: 125 EMFQGYNYDDYCCDDIFQTRIDGRRGPKRPRTILTTQQRRAFKASFEVSPKPCRKIREGL 184
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR--TRWSQYFRSMKGGTSPKDEL 288
++DTGL +R+VQVWFQN+RAK K+++K + + + S G +DEL
Sbjct: 185 AKDTGLSIRIVQVWFQNQRAKMKKIQKKQLKEGNKGNHNSNSSSKGNESQDEL 237
>gi|431916082|gb|ELK16336.1| LIM homeobox transcription factor 1-alpha [Pteropus alecto]
Length = 374
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 122/225 (54%), Gaps = 31/225 (13%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
+S+ C GC +I DRF+L++ + WH C++C C PL CF R+ L+CK D+ K
Sbjct: 21 FSSLLVCEGCQRVISDRFLLRLNDSFWHEECVQCASCKEPLETTCFYRDKKLYCKCDYEK 80
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
F KC GC I P + V RAQ VYHL CF C +C RQL GDEF +++D +L+C+ D
Sbjct: 81 LFAVKCGGCFEAIAPNEFVMRAQKTVYHLGCFCCCVCERQLQKGDEF-VLKDGQLLCRGD 139
Query: 187 YE----------------------------AAKAKDGNCLDGDQPN--KRPRTTITAKQL 216
YE A A G DG KRPRT +T +Q
Sbjct: 140 YEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQR 199
Query: 217 ETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+
Sbjct: 200 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 244
>gi|301608740|ref|XP_002933954.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Xenopus
(Silurana) tropicalis]
Length = 533
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 25/216 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG+ I DRF+L+V +R+WH C+KC C L+ C+ RN L+CKED+ K F TKC
Sbjct: 186 CAGCGNTISDRFLLRVNDRSWHECCVKCAACLQILSGTCYYRNRQLYCKEDYDKLFATKC 245
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
C + P++++ R VYH+ CF C C R+L GDEF L E +L+C+ DYE K
Sbjct: 246 NSCLKTVLPSELIMRVLSNVYHVACFFCCECERRLERGDEFVLKEG-QLLCRSDYEREKE 304
Query: 193 -----------------KDGNCL-----DGDQP--NKRPRTTITAKQLETLKMAYNTSPK 228
+DG L +G P +KRPRT +T +Q K ++ S K
Sbjct: 305 MLSALSLTPSGSVKSEDEDGASLQGKSDEGKDPKRSKRPRTILTTQQRRAFKASFEVSSK 364
Query: 229 PARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
P R VRE L+ +TGL +RVVQVWFQN+RAK K++ +
Sbjct: 365 PCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKIAR 400
>gi|149058121|gb|EDM09278.1| LIM homeobox transcription factor 1 alpha (predicted) [Rattus
norvegicus]
Length = 263
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 137/261 (52%), Gaps = 40/261 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK + K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGASEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAKEKRL 262
GL +RVVQVWFQN+RAK +++
Sbjct: 233 GLSVRVVQVWFQNQRAKLRQM 253
>gi|332230043|ref|XP_003264196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Nomascus leucogenys]
Length = 416
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 122/231 (52%), Gaps = 40/231 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 ---------------------------------AAKAKDGNCLDGDQPN--KRPRTTITA 213
A G+ DG P KRPRT +T
Sbjct: 175 LLSSVSPDESDSGEAWPELGAGLRDGERRPARGAGSQSKGSGDDGKDPRRPKRPRTILTT 234
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 285
>gi|332230041|ref|XP_003264195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Nomascus leucogenys]
Length = 401
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 122/231 (52%), Gaps = 40/231 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 ---------------------------------AAKAKDGNCLDGDQPN--KRPRTTITA 213
A G+ DG P KRPRT +T
Sbjct: 175 LLSSVSPDESDSGEAWPELGAGLRDGERRPARGAGSQSKGSGDDGKDPRRPKRPRTILTT 234
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 285
>gi|332025158|gb|EGI65338.1| LIM homeobox transcription factor 1-beta [Acromyrmex echinatior]
Length = 400
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I D+++++V ER +H CL C CGA L+ CF R+ L+C+ D+ + FG KC
Sbjct: 56 CAGCGRTIADKYVMRVAERNYHEECLSCTACGAMLSHSCFIRDLKLYCRSDYERIFGVKC 115
Query: 133 AGCEMGIPPTQVVRR-AQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA- 190
A C I + +V R L++H+ CFAC MC + L G Y++ + +C+ D+E
Sbjct: 116 ARCMEKISCSDLVMRPVSGLIFHVECFACCMCGQPLPRG-AHYILRQGQPICRRDFEHEL 174
Query: 191 ---KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+D + LD ++P KRPRT +T+ Q K ++ SPKP R VRE L++DT
Sbjct: 175 FLNSPQDDDLLDENRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDT 234
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDA 266
GL +RVVQVWFQN+RAK K+L++ A
Sbjct: 235 GLSVRVVQVWFQNQRAKMKKLQRKA 259
>gi|440898169|gb|ELR49722.1| LIM homeobox transcription factor 1-beta [Bos grunniens mutus]
Length = 392
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 125/224 (55%), Gaps = 34/224 (15%)
Query: 74 GGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCA 133
G C I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC+
Sbjct: 47 GECERPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCS 106
Query: 134 GCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE----- 188
GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 107 GCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKDL 165
Query: 189 ----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETLK 220
+ K++D G+ DG P KRPRT +T +Q K
Sbjct: 166 LSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFK 225
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 226 ASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 269
>gi|332230039|ref|XP_003264194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Nomascus leucogenys]
Length = 408
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 122/231 (52%), Gaps = 40/231 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 ---------------------------------AAKAKDGNCLDGDQPN--KRPRTTITA 213
A G+ DG P KRPRT +T
Sbjct: 175 LLSSVSPDESDSGEAWPELGAGLRDGERRPARGAGSQSKGSGDDGKDPRRPKRPRTILTT 234
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 285
>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Metaseiulus occidentalis]
Length = 434
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 125/233 (53%), Gaps = 29/233 (12%)
Query: 53 NDVDYEGIMPVYMPI---ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE 109
+D + GI+ + P + + C GC I+DR+I+KV E +WH CL C C LA
Sbjct: 36 DDNNPHGILNLQNPSDTGSRLEVCAGCERPIVDRYIMKVRESSWHESCLICSVCHQHLAT 95
Query: 110 KCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNT 169
C++R +FCK D+ + FG KCA C I P ++V +A D VYHL+CF C C RQL
Sbjct: 96 SCYSRERRIFCKNDYDRLFGAKCAACTGSIAPAELVMKALDQVYHLSCFLCCTCGRQLQR 155
Query: 170 GDEFYLMEDRKLVCKPDYE-------------------------AAKAKDGNCLDGDQPN 204
GDE Y++ + +L C+ D+E G DG +
Sbjct: 156 GDE-YVLRNGRLYCRQDFEKEMHLLQQLRGGNGGGGVGGAGVPSVGTPGAGQRPDGRRGP 214
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRA 257
KRPRT +T Q K ++ S KP R VRE L+++TGL +R+VQVWFQN+RA
Sbjct: 215 KRPRTILTTAQRRAFKASFEISQKPCRKVREALAKETGLSVRIVQVWFQNQRA 267
>gi|307189897|gb|EFN74141.1| LIM homeobox transcription factor 1 beta [Camponotus floridanus]
Length = 402
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 125/205 (60%), Gaps = 12/205 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I D+++++V ER +H CL C CGA L+ CF R+ L+C+ D+ + FG KC
Sbjct: 58 CAGCGRTIADKYVMRVAERNYHEECLSCTVCGAMLSHSCFIRDLKLYCRSDYERIFGVKC 117
Query: 133 AGCEMGIPPTQVVRR-AQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA- 190
A C I + +V R LV+H+ CFAC MC + L G Y++ + +C+ D+E
Sbjct: 118 ARCMEKISCSDLVMRPVSGLVFHVECFACCMCGQPLPRG-AHYILRQGQPICRRDFEHEL 176
Query: 191 ---KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+D + LD ++P KRPRT +T+ Q K ++ SPKP R VRE L++DT
Sbjct: 177 FLNSPQDDDLLDENRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDT 236
Query: 242 GLDMRVVQVWFQNRRAKEKRLKKDA 266
GL +RVVQVWFQN+RAK K+L++ A
Sbjct: 237 GLSVRVVQVWFQNQRAKMKKLQRKA 261
>gi|195354923|ref|XP_002043945.1| GM13699 [Drosophila sechellia]
gi|194129190|gb|EDW51233.1| GM13699 [Drosophila sechellia]
Length = 424
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 18/233 (7%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKAKD-----------GNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DY KA G+ + D + P TA L L S
Sbjct: 140 DYLLGKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTS 199
Query: 235 EQLSQDTGLDMRVV-----QVWFQNRRAKEKRLKK--DAGRTRWSQYFRSMKG 280
+ Q D + QVWF N+R+KE+R+K+ GR + R M+G
Sbjct: 200 DISVQSMSTDSKNTHDDSDQVWFPNKRSKERRMKQIISMGRPPFFGGARKMRG 252
>gi|380030211|ref|XP_003698747.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta-like [Apis florea]
Length = 402
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 120/204 (58%), Gaps = 11/204 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I+D+++++V R +H CL C C PL CF R L+C+ D+ + FG KC
Sbjct: 58 CAGCGRTIVDKYVMQVAGRNYHEECLSCAACATPLIHSCFIRELKLYCRTDYERIFGVKC 117
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA-- 190
A C I + V R V+H+ CFAC MC + L G + L + + +C+ DYE
Sbjct: 118 ARCMEKISCSDFVLRTPGSVFHVECFACCMCGQPLPPGAHYXLRQGQP-ICRRDYEHELY 176
Query: 191 --KAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+D + LD ++P KRPRT +T+ Q K ++ SPKP R VRE L++DTG
Sbjct: 177 LNSPQDDDLLDDNRPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDTG 236
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDA 266
L +RVVQVWFQN+RAK K+L++ A
Sbjct: 237 LSVRVVQVWFQNQRAKMKKLQRKA 260
>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
Length = 373
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 30/219 (13%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L++ + +WH CL+C C L C++R+ L+CK D+ + F TKC
Sbjct: 31 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLLTMSCYSRDHKLYCKHDYQQLFATKC 90
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT++V RA + VYHL+CF C +C R+L GDEF L E +L+CK DYE
Sbjct: 91 SGCLEKISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEG-QLLCKTDYEREKD 149
Query: 189 --------AAKAKDGN---------------CLDGDQPN--KRPRTTITAKQLETLKMAY 223
+ K++D + D P KRPRT +T +Q K ++
Sbjct: 150 LASPDLSDSDKSEDEDLDVKPEKGAGGQGKGSDDSKDPRRPKRPRTILTTQQRRAFKASF 209
Query: 224 NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 210 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 248
>gi|148707230|gb|EDL39177.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 352
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 134/257 (52%), Gaps = 40/257 (15%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK + K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKDGNC 197
YHL+CF C +C RQL GDEF L E +L+CK DYE + K+ D
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYEKERELLSLVSPAASDSGKSDDEES 173
Query: 198 L----------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
L D +P KRPRT +T +Q K ++ S KP R VRE L+ +T
Sbjct: 174 LCKSAHGAGKGASEDGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET 232
Query: 242 GLDMRVVQVWFQNRRAK 258
GL +RVVQVWFQN+RAK
Sbjct: 233 GLSVRVVQVWFQNQRAK 249
>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
Length = 375
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 30/219 (13%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L++ + +WH CL+C C L C++R+ L+CK D+ + F TKC
Sbjct: 33 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLLTMSCYSRDHKLYCKHDYQQLFATKC 92
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT++V RA + VYHL+CF C +C R+L GDEF L E +L+CK DYE
Sbjct: 93 SGCLEKISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEG-QLLCKTDYEREKD 151
Query: 189 --------AAKAKDGN---------------CLDGDQPN--KRPRTTITAKQLETLKMAY 223
+ K++D + D P KRPRT +T +Q K ++
Sbjct: 152 LASPDLSDSDKSEDEDLDVKPEKGAGGQGKGSDDSKDPRRPKRPRTILTTQQRRAFKASF 211
Query: 224 NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 212 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 250
>gi|158296021|ref|XP_316578.4| AGAP006540-PA [Anopheles gambiae str. PEST]
gi|157016312|gb|EAA11207.4| AGAP006540-PA [Anopheles gambiae str. PEST]
Length = 334
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 123/205 (60%), Gaps = 11/205 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG+ I D+F+L V +WH+ CL+C C PL + CF R ++CK D+ KRFGT
Sbjct: 23 CTACGEPISDQFLLDVGGCSWHSACLRCCICHTPLDHQPSCFLRERQIYCKTDYTKRFGT 82
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I T VRRA+DL++HL CFAC C RQL+TG++F L++D K++CK Y
Sbjct: 83 KCARCSRTISATDWVRRARDLIFHLACFACDSCGRQLSTGEQFALVDD-KVLCKTHYSEM 141
Query: 189 ---AAKAKDGNCLDGDQPN---KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ DG DG Q N KR RTT T +QL+ L+ +N P E+++ TG
Sbjct: 142 FDCGTSSDDGCEADGYQKNNKTKRVRTTFTEEQLQILQANFNIDSNPDGQDLERIASVTG 201
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAG 267
L RV QVWFQN RA++K+ + G
Sbjct: 202 LSKRVTQVWFQNSRARQKKHVQGTG 226
>gi|351707222|gb|EHB10141.1| LIM homeobox transcription factor 1-beta [Heterocephalus glaber]
Length = 395
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 121/219 (55%), Gaps = 34/219 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT +T +Q
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDTKPTKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAF 234
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
K ++ S KP R VRE + +TGL +RVVQVWFQN+RAK
Sbjct: 235 KASFEVSSKPCRKVRETRAAETGLSVRVVQVWFQNQRAK 273
>gi|348504222|ref|XP_003439661.1| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Oreochromis niloticus]
Length = 456
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 124/223 (55%), Gaps = 32/223 (14%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC +I DRF+++V +WH +CL+C C PL + C+ R+ +CK D+ + F +C
Sbjct: 32 CEGCAQIISDRFLMRVNGASWHQKCLQCAACQQPLTDTCYFRDTKPYCKSDYQQLFAVEC 91
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+ C I PT+ V RA D VYHL+CF C +C QL GDEF L E +L+CK DYE
Sbjct: 92 SNCLGKIAPTEFVMRALDSVYHLSCFCCCVCQHQLCKGDEFVLKEG-QLLCKTDYERERT 150
Query: 189 -----------AAKAKDGN-------------CLDGDQP---NKRPRTTITAKQLETLKM 221
+ K++D + C D + KRPRT +T Q K
Sbjct: 151 LFNTLSPDITDSDKSEDEDSDVKSEKILLVRKCSDDSKEPLRPKRPRTILTTPQQRAFKA 210
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 211 SFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 253
>gi|91078266|ref|XP_971202.1| PREDICTED: similar to GA10520-PA [Tribolium castaneum]
Length = 343
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 120/199 (60%), Gaps = 11/199 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG+ I D+F+L+V R+WHARCL+C C L + CF R+ ++CK D+ K FG
Sbjct: 83 CSACGEPISDKFLLEVSGRSWHARCLRCCVCQLQLDRQPSCFIRDRAIYCKADYAKSFGA 142
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KC+ C GI + VR+A+D VYHL CFAC C RQL+TG+EF L EDR ++CK Y
Sbjct: 143 KCSVCSRGISSSDWVRKARDHVYHLACFACAACHRQLSTGEEFALHEDR-VLCKAHYLET 201
Query: 188 ---EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ DG +G N KR RTT T +QL+ L+ + P E+++Q TG
Sbjct: 202 LDGGTTSSDDGCDAEGYHKNKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG 261
Query: 243 LDMRVVQVWFQNRRAKEKR 261
L RV QVWFQN RA++K+
Sbjct: 262 LSKRVTQVWFQNSRARQKK 280
>gi|157118342|ref|XP_001653180.1| lim homeobox protein [Aedes aegypti]
gi|108883303|gb|EAT47528.1| AAEL001380-PA [Aedes aegypti]
Length = 387
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 16/200 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG-TK 131
CG C I DR+I+KV++ ++H RCL+C C L CF R+G L+C+ D+ + +G +
Sbjct: 126 CGQCCSPICDRYIMKVVDISYHERCLQCTSCAIRLMHSCFMRDGKLYCRFDYERLYGRNR 185
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--- 188
C GC I ++V RA D V+HL CF CV+C +L GD+ Y+++ +L C+PDYE
Sbjct: 186 CLGCGEKIGADELVMRALDNVFHLKCFICVVCGVRLQKGDQ-YVIKQSQLFCRPDYEKEV 244
Query: 189 ---AAKAKDGNC--------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
D C +DG + KRPRT +T +Q K ++ SPKP R +RE L
Sbjct: 245 EMLQGYNYDDYCCDDIFQTRIDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKIREGL 304
Query: 238 SQDTGLDMRVVQVWFQNRRA 257
++DTGL +R+VQVWFQN+RA
Sbjct: 305 AKDTGLSIRIVQVWFQNQRA 324
>gi|46394864|gb|AAS91588.1| Lim1 [Oryctolagus cuniculus]
Length = 348
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 118/198 (59%), Gaps = 46/198 (23%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKCAGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 1 FGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 60
Query: 188 --------------------------------------EAAKA--KDGNCLDGDQPN--- 204
E+A K+G + D N
Sbjct: 61 LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGA 120
Query: 205 --KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
+ PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+
Sbjct: 121 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRM 180
Query: 263 KK-DAGRTRWSQYFRSMK 279
K+ A R +FRS +
Sbjct: 181 KQLSALGARRHAFFRSPR 198
>gi|355763645|gb|EHH62200.1| LIM/homeobox protein LMX1B [Macaca fascicularis]
Length = 379
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 123/218 (56%), Gaps = 34/218 (15%)
Query: 80 ILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGI 139
+L RF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC+GC I
Sbjct: 44 VLLRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKI 103
Query: 140 PPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE----------- 188
PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 104 APTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKDLLSSVSP 162
Query: 189 ----AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETLKMAYNTS 226
+ K++D G+ DG P KRPRT +T +Q K ++ S
Sbjct: 163 DESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVS 222
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 223 SKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 260
>gi|328715997|ref|XP_001946565.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Acyrthosiphon pisum]
Length = 407
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 124/212 (58%), Gaps = 20/212 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I+DRF+++V +WH +C+ C CG PLA+ C+ R+ L+CK D+ + FG KC
Sbjct: 33 CEGCGTKIVDRFLMRVGTSSWHEQCVTCSACGVPLAKSCYYRHNGLYCKNDYDRLFGVKC 92
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDR-KLVCKPDYEA- 189
C + ++V RA VYH+ CFACV C + L G ++ + +L C+ D+E
Sbjct: 93 GRCGEPLGARELVMRAGPSHVYHVGCFACVACMQPLQKGQQYVVKAGGGQLFCRTDFEKE 152
Query: 190 ---------------AKAKDGNCL--DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ D NC DG + KRPRT +T+ Q K ++ SPKP R
Sbjct: 153 IFLMQQTVGSPQPDDSLTLDENCRPRDGRRGPKRPRTILTSVQRRQFKASFEVSPKPCRK 212
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
VRE L++DTGL +RVVQVWFQN+RAK K++++
Sbjct: 213 VREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 244
>gi|270004863|gb|EFA01311.1| arrowhead [Tribolium castaneum]
Length = 349
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 120/199 (60%), Gaps = 11/199 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG+ I D+F+L+V R+WHARCL+C C L + CF R+ ++CK D+ K FG
Sbjct: 69 CSACGEPISDKFLLEVSGRSWHARCLRCCVCQLQLDRQPSCFIRDRAIYCKADYAKSFGA 128
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KC+ C GI + VR+A+D VYHL CFAC C RQL+TG+EF L EDR ++CK Y
Sbjct: 129 KCSVCSRGISSSDWVRKARDHVYHLACFACAACHRQLSTGEEFALHEDR-VLCKAHYLET 187
Query: 188 ---EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ DG +G N KR RTT T +QL+ L+ + P E+++Q TG
Sbjct: 188 LDGGTTSSDDGCDAEGYHKNKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG 247
Query: 243 LDMRVVQVWFQNRRAKEKR 261
L RV QVWFQN RA++K+
Sbjct: 248 LSKRVTQVWFQNSRARQKK 266
>gi|260828933|ref|XP_002609417.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
gi|229294773|gb|EEN65427.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
Length = 292
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 119/211 (56%), Gaps = 17/211 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C GCG I D+F+LKV ER WH +CL+C C PL C+ R +FCK D+ ++FGT
Sbjct: 51 CTGCGGPIQDKFLLKVGERQWHVKCLRCSVCQTPLGRHTTCYTREADVFCKADYIRQFGT 110
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EA 189
KCA C I VRRA+ VYHL CFAC C RQL+TG+EF L D K++CK Y EA
Sbjct: 111 KCAKCCRNIQSNDWVRRAKTHVYHLACFACDACKRQLSTGEEFAL-HDGKVLCKSHYLEA 169
Query: 190 --AKAKDGNCLD-----------GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
A A GN D G KR RTT T +QL L+ +N P E+
Sbjct: 170 MDAAAGSGNGSDCDSLYSGESGSGGHRPKRVRTTFTEEQLRVLQANFNIDSNPDGQDLER 229
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKKDAG 267
++Q TGL RV QVWFQN RA++K+ G
Sbjct: 230 IAQITGLSKRVTQVWFQNSRARQKKYGNLTG 260
>gi|300837159|gb|ADK38611.1| LIM homeodomain protein 3 isoform M2-LHX3 [Canis lupus familiaris]
Length = 265
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/135 (65%), Positives = 98/135 (72%), Gaps = 12/135 (8%)
Query: 176 MEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVRE 235
MED +LVCK DYE AK ++ KRPRTTITAKQLETLK AYNTSPKPARHVRE
Sbjct: 1 MEDSRLVCKADYETAKQREAEAT-----AKRPRTTITAKQLETLKSAYNTSPKPARHVRE 55
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMK----GGTSPKDELK-- 289
QLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW YFRSMK G S KD ++
Sbjct: 56 QLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGPYFRSMKRARGGPKSDKDSVQEE 115
Query: 290 -IDLDSNFSHSHGKT 303
D D++ S + T
Sbjct: 116 GQDSDADVSFTDEPT 130
>gi|194749355|ref|XP_001957104.1| GF24228 [Drosophila ananassae]
gi|190624386|gb|EDV39910.1| GF24228 [Drosophila ananassae]
Length = 275
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 118/202 (58%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA+DLV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E + DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDDGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|194747127|ref|XP_001956004.1| GF24815 [Drosophila ananassae]
gi|190623286|gb|EDV38810.1| GF24815 [Drosophila ananassae]
Length = 613
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 20/213 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF++ V E WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 249 CEGCGQKIHDRFLMNVGEANWHEQCLACCYCGLQLHHTCYVRNSKLYCKMDYDRLFGVKC 308
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC-KPDYEA- 189
A C I P ++V R + V+HL CF C C L G++F L+ D +L C + D E
Sbjct: 309 ASCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQF-LLRDGQLFCYRHDLEKE 367
Query: 190 ---AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
A A +C DG + KRPRT +T++Q + K +++ SPKP R V
Sbjct: 368 MFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKV 427
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
RE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 428 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 460
>gi|195161060|ref|XP_002021388.1| GL25299 [Drosophila persimilis]
gi|198465223|ref|XP_001353549.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
gi|194118501|gb|EDW40544.1| GL25299 [Drosophila persimilis]
gi|198150064|gb|EAL31062.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA+DLV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|149551088|ref|XP_001517055.1| PREDICTED: LIM/homeobox protein Lhx5-like, partial [Ornithorhynchus
anatinus]
Length = 231
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 120/197 (60%), Gaps = 45/197 (22%)
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+RFGTKCAGC GI P+ +VR+A++ V+HLNCF C++C +QL+TG+E Y++++ K VCK
Sbjct: 9 RRFGTKCAGCAQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKE 68
Query: 186 DY-EAAKAKDGN------CLD-----------GDQPNKR--------------------- 206
DY + K+G+ C D D P +
Sbjct: 69 DYLNSPSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDHSTSSDKEAANNENEEQNSG 128
Query: 207 -----PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R
Sbjct: 129 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 188
Query: 262 LKK-DAGRTRWSQYFRS 277
+K+ A R +FRS
Sbjct: 189 MKQLSALGARRHAFFRS 205
>gi|195012851|ref|XP_001983760.1| GH15398 [Drosophila grimshawi]
gi|193897242|gb|EDV96108.1| GH15398 [Drosophila grimshawi]
Length = 618
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 122/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR+++ V + WH +CL C CG L C+ RN L+CK+D+ + FG KC
Sbjct: 255 CEGCGQKIHDRYLMNVGDANWHEQCLACCYCGLQLHHTCYVRNSKLYCKQDYDRLFGVKC 314
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
A C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 315 AACCHAILPQELVMRPISNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 374
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 375 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 434
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 435 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 466
>gi|195441498|ref|XP_002068546.1| GK20529 [Drosophila willistoni]
gi|194164631|gb|EDW79532.1| GK20529 [Drosophila willistoni]
Length = 275
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 118/202 (58%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + C+ R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCYIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA+DLV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E + DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDDGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|345132131|gb|AEN75258.1| Lim1 [Neanthes arenaceodentata]
Length = 498
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 96/124 (77%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C EC + L +KCF+R+G L+C+EDFF+RFGTKC
Sbjct: 26 CAGCERPILDRFLLNVLDRAWHAKCVQCVECRSNLTDKCFSRDGKLYCREDFFRRFGTKC 85
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC GI P +VRRA++ V+HL CF C++C +QL+TG+E Y++++ K +CK DY ++K
Sbjct: 86 GGCSQGISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEELYVLDENKFICKEDYLSSKL 145
Query: 193 KDGN 196
+ G+
Sbjct: 146 QGGS 149
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 62/88 (70%)
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
KDG + PRTTI AKQLE LK A+ +PKP RH+REQL+Q+TGL+MRV+QVW
Sbjct: 287 GKDGEAAPTGTKRRGPRTTIKAKQLEVLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 346
Query: 252 FQNRRAKEKRLKKDAGRTRWSQYFRSMK 279
FQNRR+KE+R+K+ + +FR+ +
Sbjct: 347 FQNRRSKERRMKQLSALGARRHFFRAPR 374
>gi|405973461|gb|EKC38176.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 278
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 118/203 (58%), Gaps = 8/203 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCGDLI +RF+L V + WH CL+C C L + CF R ++C+ D+ + FGT
Sbjct: 45 CYGCGDLITERFLLHVNGQAWHVGCLRCCICQIGLERQTSCFIREDNIYCRNDYSREFGT 104
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C I T VRRA++ VYHL CFAC C RQL+TG+EF L DR ++CK Y
Sbjct: 105 KCAKCYRTIQSTDWVRRARENVYHLACFACDSCKRQLSTGEEFALHGDR-VLCKSHYMEL 163
Query: 188 -EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
E +KD C + KR RTT T QL+ L+ + P E+++Q TGL R
Sbjct: 164 LEGGSSKDSECSQKSKA-KRVRTTFTEDQLQVLQANFQLDSNPDGQDLERIAQITGLSKR 222
Query: 247 VVQVWFQNRRAKEKRLKKDAGRT 269
V QVWFQN RA++K+ ++ T
Sbjct: 223 VTQVWFQNSRARQKKQQQGGEHT 245
>gi|410904301|ref|XP_003965630.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 373
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L + C+ +N +FCK D+F RFGT
Sbjct: 95 CASCGQEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFSRFGT 154
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 155 KCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 213
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA++ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 214 VENLKRAAESGNGITLEGAVPTEQDSQPKPAKRARTSFTAEQLQIMQAQFAQDNNPDAQT 273
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 274 LQKLADMTGLSRRVIQVWFQNCRARHKK 301
>gi|258504135|gb|ACV72767.1| LIM-6 [Caenorhabditis remanei]
gi|258504137|gb|ACV72768.1| LIM-6 [Caenorhabditis remanei]
gi|258504139|gb|ACV72769.1| LIM-6 [Caenorhabditis remanei]
gi|258504141|gb|ACV72770.1| LIM-6 [Caenorhabditis remanei]
gi|258504143|gb|ACV72771.1| LIM-6 [Caenorhabditis remanei]
gi|258504147|gb|ACV72773.1| LIM-6 [Caenorhabditis remanei]
Length = 263
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 130/210 (61%), Gaps = 14/210 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C CG LI DR+I +V++ ++H CL+C+ C + L+ +KCF+R+G ++C++D FG
Sbjct: 9 CSACGCLIKDRYIYRVMDESYHETCLRCYCCQSSLSSFKKCFSRHGNIYCEQDHQMLFGK 68
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA- 189
+C C + + PT +V R + YH CF+C C N GDE+++ D ++ C+ DY+A
Sbjct: 69 RCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDEYHVF-DSEVFCRNDYQAI 127
Query: 190 ------AKAKDGNCLDGDQPNK---RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
+++ + + + K RPRT + A+Q K A+ S KP+R VREQL+ +
Sbjct: 128 CNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANE 187
Query: 241 TGLDMRVVQVWFQNRRAKEKRL-KKDAGRT 269
TGL +RVVQVWFQN+RAK K++ KKD+ T
Sbjct: 188 TGLSVRVVQVWFQNQRAKIKKMNKKDSDST 217
>gi|258504145|gb|ACV72772.1| LIM-6 [Caenorhabditis remanei]
Length = 263
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 130/210 (61%), Gaps = 14/210 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C CG LI DR+I +V++ ++H CL+C+ C + L+ +KCF+R+G ++C++D FG
Sbjct: 9 CSACGCLIKDRYIYRVMDESYHETCLRCYCCQSSLSSFKKCFSRHGNIYCEQDHQMLFGK 68
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA- 189
+C C + + PT +V R + YH CF+C C N GDE+++ D ++ C+ DY+A
Sbjct: 69 RCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDEYHVF-DSEVFCRNDYQAI 127
Query: 190 ------AKAKDGNCLDGDQPNK---RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
+++ + + + K RPRT + A+Q K A+ S KP+R VREQL+ +
Sbjct: 128 CNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANE 187
Query: 241 TGLDMRVVQVWFQNRRAKEKRL-KKDAGRT 269
TGL +RVVQVWFQN+RAK K++ KKD+ T
Sbjct: 188 TGLSVRVVQVWFQNQRAKIKKMNKKDSDST 217
>gi|308489722|ref|XP_003107054.1| CRE-LIM-6 protein [Caenorhabditis remanei]
gi|308252942|gb|EFO96894.1| CRE-LIM-6 protein [Caenorhabditis remanei]
Length = 314
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 130/210 (61%), Gaps = 14/210 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C CG LI DR+I +V++ ++H CL+C+ C + L+ +KCF+R+G ++C++D FG
Sbjct: 42 CSACGCLIKDRYIYRVMDESYHETCLRCYCCQSSLSSFKKCFSRHGNIYCEQDHQMLFGK 101
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA- 189
+C C + + PT +V R + YH CF+C C N GDE+++ D ++ C+ DY+A
Sbjct: 102 RCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDEYHVF-DSEVFCRNDYQAI 160
Query: 190 ------AKAKDGNCLDGDQPNK---RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
+++ + + + K RPRT + A+Q K A+ S KP+R VREQL+ +
Sbjct: 161 CNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANE 220
Query: 241 TGLDMRVVQVWFQNRRAKEKRL-KKDAGRT 269
TGL +RVVQVWFQN+RAK K++ KKD+ T
Sbjct: 221 TGLSVRVVQVWFQNQRAKIKKMNKKDSDST 250
>gi|348513701|ref|XP_003444380.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 375
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L + C+ +N +FCK D+F RFGT
Sbjct: 97 CASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFSRFGT 156
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 157 KCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 215
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA++ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 216 VENLKRAAESGNGITLEGAVPTEQDSQPKPAKRARTSFTAEQLQIMQAQFAQDNNPDAQT 275
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 276 LQKLADMTGLSRRVIQVWFQNCRARHKK 303
>gi|357612982|gb|EHJ68260.1| hypothetical protein KGM_10626 [Danaus plexippus]
Length = 327
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 118/193 (61%), Gaps = 13/193 (6%)
Query: 86 LKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVV 145
++V + +WH CL C CG PLA C+ RN L+CK D+ + FG KC C + P ++V
Sbjct: 1 MRVGDLSWHEHCLSCCVCGCPLAHTCYTRNAKLYCKPDYDRLFGVKCTRCGDRLLPQEMV 60
Query: 146 RRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-----AAKAKDGNCL-- 198
RAQ V+H+ CF CVMC + L G++ Y++ ++ C+ D+E A+D +
Sbjct: 61 MRAQQYVFHIQCFVCVMCCQPLQKGEQ-YVIRAGQIFCRQDFEKEMYLMQHAEDDMIIDD 119
Query: 199 -----DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
DG + KRPRT +T+ Q K ++ SPKP R VRE L++DTGL +RVVQVWFQ
Sbjct: 120 SERPRDGRRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKDTGLSVRVVQVWFQ 179
Query: 254 NRRAKEKRLKKDA 266
N+RAK K++++ A
Sbjct: 180 NQRAKMKKIQRKA 192
>gi|17945534|gb|AAL48819.1| RE24382p [Drosophila melanogaster]
Length = 275
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDDQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|326668246|ref|XP_685757.4| PREDICTED: LIM/homeobox protein Lhx6 [Danio rerio]
Length = 270
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 127/220 (57%), Gaps = 25/220 (11%)
Query: 60 IMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGL 117
I+PV++ C GC I DR++LKV TWH RCL+C C L + CF RN
Sbjct: 27 ILPVFI-------CTGCSTEIFDRYVLKVNGLTWHLRCLQCSVCAVSLGHQNSCFIRNKE 79
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+FC+ D+ FG KCA C + +RRA + +YHL CFAC C RQL+TG+EF LME
Sbjct: 80 IFCRTDYNSTFGIKCARCGHQVSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFGLME 139
Query: 178 DRKLVCKPDYEAA------KAKDGNC--LDGDQP-------NKRPRTTITAKQLETLKMA 222
+ +++C+ Y+ + +GN LDG P +KRPRT+ T++Q++ ++
Sbjct: 140 N-QVLCRVHYDITLLNLQQLSDNGNLIHLDGALPIQYLPKASKRPRTSFTSEQIQIMQTH 198
Query: 223 YNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
+ P ++L+ TGL RV+QVWFQN RA++KR+
Sbjct: 199 FIRDKNPDAATLQRLADTTGLSRRVIQVWFQNCRARQKRI 238
>gi|24656992|ref|NP_728906.1| arrowhead, isoform B [Drosophila melanogaster]
gi|194866170|ref|XP_001971791.1| GG15164 [Drosophila erecta]
gi|195491511|ref|XP_002093592.1| GE21383 [Drosophila yakuba]
gi|62510367|sp|Q8IRC7.1|AWH_DROME RecName: Full=LIM/homeobox protein Awh; AltName: Full=Protein
arrowhead
gi|23092944|gb|AAN11572.1| arrowhead, isoform B [Drosophila melanogaster]
gi|94400621|gb|ABF17921.1| FI01007p [Drosophila melanogaster]
gi|190653574|gb|EDV50817.1| GG15164 [Drosophila erecta]
gi|194179693|gb|EDW93304.1| GE21383 [Drosophila yakuba]
Length = 275
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|195337236|ref|XP_002035235.1| GM14592 [Drosophila sechellia]
gi|194128328|gb|EDW50371.1| GM14592 [Drosophila sechellia]
Length = 275
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|195440764|ref|XP_002068210.1| GK10148 [Drosophila willistoni]
gi|194164295|gb|EDW79196.1| GK10148 [Drosophila willistoni]
Length = 636
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR+++ V E WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 270 CEGCGQKIHDRYLMNVGEANWHEQCLACCYCGMQLHHTCYVRNSKLYCKLDYDRLFGVKC 329
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
A C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 330 AACCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCFRHDLEKEM 389
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 390 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 449
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 450 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 481
>gi|442630038|ref|NP_001261380.1| arrowhead, isoform D [Drosophila melanogaster]
gi|440215264|gb|AGB94075.1| arrowhead, isoform D [Drosophila melanogaster]
Length = 271
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|442630036|ref|NP_001261379.1| arrowhead, isoform C [Drosophila melanogaster]
gi|440215263|gb|AGB94074.1| arrowhead, isoform C [Drosophila melanogaster]
Length = 287
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|442631924|ref|NP_001261754.1| CG32105, isoform C [Drosophila melanogaster]
gi|440215685|gb|AGB94447.1| CG32105, isoform C [Drosophila melanogaster]
Length = 639
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 274 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKC 333
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
+ C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 334 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 393
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 394 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 453
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 454 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 485
>gi|195589796|ref|XP_002084635.1| GD14373 [Drosophila simulans]
gi|194196644|gb|EDX10220.1| GD14373 [Drosophila simulans]
Length = 642
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 277 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKC 336
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
+ C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 337 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 396
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 397 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 456
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 457 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 488
>gi|37789883|gb|AAP04274.1| ScLim1 [Scyliorhinus canicula]
Length = 237
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 115/197 (58%), Gaps = 45/197 (22%)
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+RFGTKCAGC GI P+ +VRRA+ V+HLNCF C++C +QL+TG+E Y++++ K VCK
Sbjct: 1 RRFGTKCAGCYQGISPSDLVRRARSKVFHLNCFTCMICNKQLSTGEELYIIDENKFVCKD 60
Query: 186 DY-------------------------------------EAAKAKDGNCLDGDQPNKR-- 206
D+ E+A D + +
Sbjct: 61 DFLNSNNSRENGALSVTACSDQSLSPDSQDHLQDDTKDSESANISDKETASNENEEQNLG 120
Query: 207 -----PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R
Sbjct: 121 AKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 180
Query: 262 LKK-DAGRTRWSQYFRS 277
+K+ A R +FRS
Sbjct: 181 MKQLSALGARRHAFFRS 197
>gi|432856535|ref|XP_004068463.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 348
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 114/217 (52%), Gaps = 25/217 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V + WH RC++C CG L CF L+CK D+ F C
Sbjct: 16 CVGCQRRITDRFLLRVADGLWHERCVRCAACGDALRNSCFLLERKLYCKRDYSSLFAVHC 75
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
GC I P+++V RA V+HL+CF C +C L TGD L + R L + DY
Sbjct: 76 GGCAEAISPSELVMRAGAAVFHLSCFTCSVCFHHLKTGDRCILQDGRLLCAREDYHQLQA 135
Query: 189 ------------------AAKAKDGNCLDGDQPN---KRPRTTITAKQLETLKMAYNTSP 227
+AK D DQ N KRPRT +T +Q T K ++ S
Sbjct: 136 SPPSSDIGKSGDDEEEEPSAKVMDKPGRSHDQENKRPKRPRTILTTQQRRTFKASFEVSS 195
Query: 228 KPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 196 KPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 232
>gi|24663250|ref|NP_729801.1| CG32105, isoform B [Drosophila melanogaster]
gi|23093601|gb|AAF49930.2| CG32105, isoform B [Drosophila melanogaster]
gi|28316896|gb|AAO39470.1| RE70810p [Drosophila melanogaster]
Length = 640
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 275 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKC 334
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
+ C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 335 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 394
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 395 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 454
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 455 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 486
>gi|195126146|ref|XP_002007535.1| GI13003 [Drosophila mojavensis]
gi|193919144|gb|EDW18011.1| GI13003 [Drosophila mojavensis]
Length = 607
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 20/213 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR+++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 244 CEGCGQKIHDRYLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKLDYDRLFGVKC 303
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC------KP 185
AGC I P ++V R + V+HL CF C C L G++F ++ D +L C K
Sbjct: 304 AGCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQF-MLRDGQLFCYRHDLDKE 362
Query: 186 DYEAAKAK--------DGNCL----DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
+ AA A D L DG + KRPRT +T++Q + K +++ SPKP R V
Sbjct: 363 MFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKV 422
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
RE L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 423 REALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 455
>gi|405975209|gb|EKC39790.1| LIM/homeobox protein Lhx5 [Crassostrea gigas]
Length = 471
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 92/120 (76%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C ILDRF+L VL+R WHA+C++C +C L +KCF+R+G LFC+ DFF+RFGTK
Sbjct: 3 QCAACDRPILDRFLLNVLDRAWHAKCVQCSDCKTTLTDKCFSRDGKLFCRNDFFRRFGTK 62
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CAGC GI P +VRRA++ V+HL CF C++C +QL+TG+E Y+M++ + +CK DY ++K
Sbjct: 63 CAGCTQGISPNDLVRRARNKVFHLKCFTCIICRKQLSTGEELYVMDENRFICKEDYISSK 122
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 6/86 (6%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+ +
Sbjct: 261 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 320
Query: 267 GRTRWSQYF------RSMKGGTSPKD 286
+F R+++ G SP D
Sbjct: 321 ALGARRHFFRNPRRMRALRAGMSPND 346
>gi|258504133|gb|ACV72766.1| LIM-6 [Caenorhabditis remanei]
Length = 263
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 126/204 (61%), Gaps = 13/204 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C CG LI DR+I +V++ ++H CL+C+ C + L+ +KCF+R+G ++C++D FG
Sbjct: 9 CSACGCLIKDRYIYRVMDESYHETCLRCYCCQSSLSSFKKCFSRHGNIYCEQDHQMLFGK 68
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA- 189
+C C + + PT +V R + YH CF+C C N GDE+++ D ++ C+ DY+A
Sbjct: 69 RCRRCMILLSPTDIVHRVHYMYYHAQCFSCCSCQGPFNLGDEYHVF-DSEVFCRNDYQAI 127
Query: 190 ------AKAKDGNCLDGDQPNK---RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
+++ + + + K RPRT + A+Q K A+ S KP+R VREQL+ +
Sbjct: 128 CNFGTTSESMLEDVVRSEHHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANE 187
Query: 241 TGLDMRVVQVWFQNRRAKEKRLKK 264
TGL +RVVQVWFQN+RAK K++ K
Sbjct: 188 TGLSVRVVQVWFQNQRAKIKKMNK 211
>gi|195327101|ref|XP_002030260.1| GM25340 [Drosophila sechellia]
gi|194119203|gb|EDW41246.1| GM25340 [Drosophila sechellia]
Length = 637
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 274 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGIKC 333
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
+ C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 334 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 393
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 394 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 453
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 454 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 485
>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
Length = 511
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 89/115 (77%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C C ILD+F+L VLERTWHA C++C +C APL +KCF+R LFC+ DFF+R+GTKC
Sbjct: 78 CAACDKPILDKFLLNVLERTWHADCVRCFDCHAPLTDKCFSRENKLFCRNDFFRRYGTKC 137
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
GC GI P+ +VR+A+D V+HLNCF C++C +QL+TG+E Y+++D K +CK DY
Sbjct: 138 GGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKDDY 192
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 111/246 (45%), Gaps = 39/246 (15%)
Query: 72 KCGGCGDLILDR-FILKVLERTWHARCLKCHECGAPLA---EKCFARNGLLFCKEDFFKR 127
KCGGCG I + K ++ +H C C C L+ E + CK+D+
Sbjct: 136 KCGGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKDDYLN- 194
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQL----------NTGDEFYLME 177
G K A + + ++D N A + T +
Sbjct: 195 -GNKTAAITGHHHDSLMGSASEDEEDDDNSTASSVLKHHTLHGSLPPAPGETNNNSLPHS 253
Query: 178 DRKLVCKPDYEAAK--AKDGNCLDGD-----------QPN--------KRPRTTITAKQL 216
D D + + ++D N DGD P+ + PRTTI AKQL
Sbjct: 254 DISSSIGQDSKTGQDDSEDQNSFDGDAEMRDSQTENKSPDDSSAGSKRRGPRTTIKAKQL 313
Query: 217 ETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK--DAGRTRWSQY 274
E LK A++ +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+RLK+ GR +
Sbjct: 314 EILKTAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGG 373
Query: 275 FRSMKG 280
R M+G
Sbjct: 374 SRKMRG 379
>gi|326666245|ref|XP_001922131.3| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Danio
rerio]
Length = 396
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 131/238 (55%), Gaps = 28/238 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V E +WH C+KC C + L+ C+ R+ LL+CK D+ K F KC
Sbjct: 60 CAGCESPIADRFLLRVNELSWHETCVKCAVCRSALSGTCYCRDRLLYCKHDYEKLFVRKC 119
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
+ C I ++++ R VYHL CF+C C R+L GDEF L E +L+C+ DY
Sbjct: 120 SACLQAIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEG-QLLCRGDYEKERE 178
Query: 188 ----------EAAKAKDGNCL----------DGDQP--NKRPRTTITAKQLETLKMAYNT 225
E+ K++D DG + +KRPRT +T +Q K ++
Sbjct: 179 MLAAISPAPTESVKSEDEEGGGVSVGGKAGDDGKEHKRSKRPRTILTTQQRRAFKASFEV 238
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTS 283
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K++ + + + Q M G+S
Sbjct: 239 SSKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKIARRQQQQQQQQEQEQMGDGSS 296
>gi|51571915|ref|NP_001004015.1| LIM/homeobox protein Lhx6 [Danio rerio]
gi|50953777|gb|AAT90495.1| Lhx6 [Danio rerio]
gi|190336767|gb|AAI62225.1| LIM homeobox 6 [Danio rerio]
Length = 375
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L + C+ +N +FCK D+F RFGT
Sbjct: 97 CASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFSRFGT 156
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 157 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 215
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA++ G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 216 VENLKRAAESGSGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 275
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 276 LQKLADMTGLSRRVIQVWFQNCRARHKK 303
>gi|312385468|gb|EFR29960.1| hypothetical protein AND_00755 [Anopheles darlingi]
Length = 339
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Query: 57 YEGIMPV-YMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFA 113
Y G++ + + I CGGC + I DR+I +V +WH CL+C C PL + CF
Sbjct: 57 YFGVLVLEWTGITEYKACGGCSEQITDRYIFEVNGASWHGSCLRCSVCYCPLERQASCFL 116
Query: 114 RNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEF 173
R+G ++CK D+ K+F T CA C I T VRRA++ V+HL CFAC C RQL+TG++F
Sbjct: 117 RDGDVYCKADYIKKFKTSCAKCARSISATDWVRRAREYVFHLACFACDSCGRQLSTGEQF 176
Query: 174 YLMEDRKLVCKPDYE------AAKAKDGNCLDGD---QPNKRPRTTITAKQLETLKMAYN 224
+ EDR ++CK Y ++DG DG KR RTT T +Q++ L+ +
Sbjct: 177 AICEDR-VLCKTHYMELIDDGTTSSEDGCDADGSGKGSKTKRIRTTFTEEQIQILQANFQ 235
Query: 225 TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P E+++ TGL RV QVWFQN RA++K+
Sbjct: 236 IDSNPDGQDLERIALATGLSKRVTQVWFQNSRARQKK 272
>gi|24656997|ref|NP_523907.2| arrowhead, isoform A [Drosophila melanogaster]
gi|23092945|gb|AAF47800.2| arrowhead, isoform A [Drosophila melanogaster]
Length = 214
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|345492348|ref|XP_001601137.2| PREDICTED: LIM/homeobox protein Awh-like [Nasonia vitripennis]
Length = 300
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 116/200 (58%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ + +R ++ V RTWH++CLKC C PL ++ CF RN ++C++D+ FG
Sbjct: 91 CGGCGENVHERTVICVGGRTWHSKCLKCCACSKPLHDQHSCFLRNTQIYCRQDYVINFGA 150
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+CA C I VRRA+D VYHL CFAC C+RQL+TG++F L+ D KL+CK Y A
Sbjct: 151 RCAKCSRSIGSGDWVRRARDRVYHLACFACDACSRQLSTGEQFALI-DAKLLCKAHYLDA 209
Query: 191 KAKDGNCLDGD---------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ D KR RTT T +QL L+ + P E+++ T
Sbjct: 210 VEGNNTSSSEDCDSEHSCKGNKTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 269
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 270 GLSKRVTQVWFQNSRARQKK 289
>gi|195376257|ref|XP_002046913.1| GJ13148 [Drosophila virilis]
gi|194154071|gb|EDW69255.1| GJ13148 [Drosophila virilis]
Length = 588
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR+++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 224 CEGCGQKIHDRYLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKLDYDRLFGVKC 283
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
A C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 284 AACCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 343
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 344 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 403
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 404 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 435
>gi|71361857|gb|AAZ30032.1| LIM homeodomain protein, partial [Gallus gallus]
Length = 235
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 123/207 (59%), Gaps = 20/207 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 30 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQHSCYIKNKEIFCKMDYFSRFGT 89
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 90 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 148
Query: 189 ------AAKAKDGNCLDGD---------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 149 IENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 208
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEK 260
++L+ TGL RV+QVWFQN RA++K
Sbjct: 209 LQKLADMTGLSRRVIQVWFQNCRARQK 235
>gi|194869797|ref|XP_001972523.1| GG15572 [Drosophila erecta]
gi|190654306|gb|EDV51549.1| GG15572 [Drosophila erecta]
Length = 652
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 283 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKC 342
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
+ C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 343 SSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 402
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 403 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 462
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 463 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 494
>gi|321473071|gb|EFX84039.1| hypothetical protein DAPPUDRAFT_24627 [Daphnia pulex]
Length = 225
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 124/216 (57%), Gaps = 23/216 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR++++V + +WH CL C C APL CF R+G ++C++D+ + +G KC
Sbjct: 2 CEGCGLGIADRYVMRVADGSWHEDCLVCCICHAPLVHSCFTRSGRVYCRQDYDRVYGAKC 61
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--- 188
C + P ++V RA L +HL CF C +C R L GD+F ++ +L+C+ D E
Sbjct: 62 GRCGERLYPHELVMRAGSSLAFHLPCFGCFICGRPLQKGDQF-VVRAGQLLCRDDLEKDL 120
Query: 189 ------------------AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPA 230
AA DG + KRPRT +T+ Q K ++ SPKP
Sbjct: 121 FLIQSTTNNNNNNNGDDSAADDSSRPRHDGRRGPKRPRTILTSAQRRQFKASFEISPKPC 180
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
R VRE L+++TGL +RVVQVWFQN+RAK K+L++ A
Sbjct: 181 RKVREALAKETGLSVRVVQVWFQNQRAKMKKLQRKA 216
>gi|380013153|ref|XP_003690632.1| PREDICTED: LIM/homeobox protein Awh-like [Apis florea]
Length = 332
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 125/217 (57%), Gaps = 18/217 (8%)
Query: 59 GIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNG 116
G++ MP A++ +CGGCG+ + +R +L V RTWH+RCL+C C PL ++ CF +
Sbjct: 29 GLIGAEMP-ANVMECGGCGERVRERTVLCVGGRTWHSRCLRCFACARPLHDQHSCFLKGM 87
Query: 117 LLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM 176
L+C+ D+ FG KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+
Sbjct: 88 RLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL 147
Query: 177 EDRKLVCKPDYEAAKAKDGNCLDGDQPN------------KRPRTTITAKQLETLKMAYN 224
D +L+CK Y +GN D+ KR RTT T +QL L+ +
Sbjct: 148 -DARLLCKAHY--LDVVEGNNTSSDEGGDSESGHKSGNKAKRVRTTFTEEQLSVLQANFQ 204
Query: 225 TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P E+++ TGL RV QVWFQN RA++K+
Sbjct: 205 LDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKK 241
>gi|195160505|ref|XP_002021116.1| GL25169 [Drosophila persimilis]
gi|194118229|gb|EDW40272.1| GL25169 [Drosophila persimilis]
Length = 613
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR+++ V E WH +CL C CG L C+ R+ L+CK D+ + FG KC
Sbjct: 250 CEGCGQKIHDRYLMNVGEANWHEQCLACCYCGMQLHHTCYVRSSKLYCKMDYDRLFGVKC 309
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
A C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 310 ASCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 369
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 370 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 429
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 430 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 461
>gi|444724034|gb|ELW64656.1| LIM/homeobox protein Lhx6 [Tupaia chinensis]
Length = 336
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 40 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 99
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 100 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 158
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 159 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 218
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 219 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 254
>gi|348508944|ref|XP_003442012.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 368
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 121/223 (54%), Gaps = 36/223 (16%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V ER+WH C+KC C + L C++R+ LL+CK D+ K F KC
Sbjct: 31 CAGCESPIADRFLLRVNERSWHETCVKCAVCLSALTGTCYSRDRLLYCKHDYEKLFVRKC 90
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+ C I ++++ R VYHL CF+C C R+L GDEF L E +L+C+ DYE
Sbjct: 91 SACLQVIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEG-QLLCRMDYE---- 145
Query: 193 KDGNCLDGDQP-------------------------------NKRPRTTITAKQLETLKM 221
K+ L P +KRPRT +T +Q K
Sbjct: 146 KEREMLAAISPTPTESVKSEDEDGGGGSGGGKGGDEGKEHKRSKRPRTILTTQQRRAFKA 205
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 206 SFEVSAKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKLAR 248
>gi|156398319|ref|XP_001638136.1| predicted protein [Nematostella vectensis]
gi|156225254|gb|EDO46073.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 122/225 (54%), Gaps = 34/225 (15%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC +C L EKC F R G +CK D+ +
Sbjct: 14 VSMCVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDEKCTCFVREGKTYCKRDYVR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKCA C + V RA++ +YH++CF CV C+RQL GDEF L ED L CK D
Sbjct: 74 LFGTKCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALRED-GLFCKAD 132
Query: 187 YEAAK-----------------------AKDGNCLDGDQPNKRP-------RTTITAKQL 216
+E + +G P+KR RT + KQL
Sbjct: 133 HEIVEKATATAQATHVRNNGQRSSQSGGQTNGQTTPDSTPSKRKTDRPTRVRTVLNEKQL 192
Query: 217 ETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 HTLRTCYNANPRPDAMMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 237
>gi|195493808|ref|XP_002094572.1| GE21898 [Drosophila yakuba]
gi|194180673|gb|EDW94284.1| GE21898 [Drosophila yakuba]
Length = 642
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DRF++ V + WH +CL C CG L C+ RN L+CK D+ + FG KC
Sbjct: 275 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKC 334
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
+ C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 335 SSCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 394
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 395 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 454
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 455 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 486
>gi|198464782|ref|XP_001353366.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
gi|198149877|gb|EAL30873.2| GA16684 [Drosophila pseudoobscura pseudoobscura]
Length = 620
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GCG I DR+++ V E WH +CL C CG L C+ R+ L+CK D+ + FG KC
Sbjct: 257 CEGCGQKIHDRYLMNVGEANWHEQCLACCYCGMQLHHTCYVRSSKLYCKMDYDRLFGVKC 316
Query: 133 AGCEMGIPPTQVVRRA-QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA-- 189
A C I P ++V R + V+HL CF C C L G++F L + + + D E
Sbjct: 317 ASCCHAILPQELVMRPIPNYVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 376
Query: 190 --AKAKDGNC-------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
A A +C DG + KRPRT +T++Q + K +++ SPKP R VR
Sbjct: 377 FLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVR 436
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
E L++DTGL +RVVQVWFQN+RAK K++++ A
Sbjct: 437 EALAKDTGLSVRVVQVWFQNQRAKMKKIQRKA 468
>gi|410978995|ref|XP_003995872.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Felis catus]
Length = 363
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|410908008|ref|XP_003967483.1| PREDICTED: insulin gene enhancer protein ISL-2A-like [Takifugu
rubripes]
Length = 359
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 125/228 (54%), Gaps = 35/228 (15%)
Query: 68 ASIPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
+ I C GCG I D++I++V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 22 SGIAMCVGCGSQIHDQYIMRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ FG KCA C MG + +V RA+D VYH+ CF C +C R L GDEF L ED +L+C+
Sbjct: 82 ARLFGIKCAKCNMGFCSSDLVMRARDSVYHMECFRCSVCCRHLLPGDEFSLRED-ELLCR 140
Query: 185 PDY--EAAKAKDGNCLDGDQPNKRP-----------------------------RTTITA 213
D+ +A G+ L + RP RT +T
Sbjct: 141 ADHCLLMERASAGSPLSPGTIHSRPLHISDAVTVRHPPHHRNHGHKQSEKTTRIRTVLTE 200
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
KQL TL+ YN +P+P ++EQL + TGL RVV+VWFQN+R K+K+
Sbjct: 201 KQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVVRVWFQNKRCKDKK 248
>gi|296482369|tpg|DAA24484.1| TPA: LIM homeobox 6 isoform 2 [Bos taurus]
Length = 377
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|334191691|ref|NP_001229263.1| LIM/homeobox protein Lhx6 isoform 4 [Homo sapiens]
gi|90185239|sp|Q9UPM6.2|LHX6_HUMAN RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|7018428|emb|CAB66505.1| hypothetical protein [Homo sapiens]
gi|74353529|gb|AAI03938.1| LIM homeobox 6 [Homo sapiens]
gi|117646920|emb|CAL37575.1| hypothetical protein [synthetic construct]
gi|119607922|gb|EAW87516.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|119607923|gb|EAW87517.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|158260677|dbj|BAF82516.1| unnamed protein product [Homo sapiens]
gi|189054037|dbj|BAG36544.1| unnamed protein product [Homo sapiens]
Length = 363
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|392925293|ref|NP_001256980.1| Protein LIM-6, isoform b [Caenorhabditis elegans]
gi|351020895|emb|CCD62868.1| Protein LIM-6, isoform b [Caenorhabditis elegans]
Length = 316
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 26/218 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C GCG LI DR+I +V+E ++H CL+C C L+ +KCF+R+G ++C+ D +G
Sbjct: 42 CSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDHQMLYGK 101
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C C + PT +V R + YH CF+C C R N GDE+++ D ++ C+ DY++
Sbjct: 102 RCRRCMTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDEYHVF-DGEVFCRNDYQSI 160
Query: 191 KAKDGNCLDGDQPN----------------KRPRTTITAKQLETLKMAYNTSPKPARHVR 234
N P+ KRPRT + A+Q K A+ S KP+R VR
Sbjct: 161 ----CNFQTISNPDPLMEEVVRSEIHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVR 216
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKK---DAGRT 269
EQL+ +TGL +RVVQVWFQN+RAK K+L K D+G T
Sbjct: 217 EQLANETGLSVRVVQVWFQNQRAKIKKLNKKDSDSGDT 254
>gi|321455236|gb|EFX66374.1| hypothetical protein DAPPUDRAFT_11288 [Daphnia pulex]
Length = 349
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 92/124 (74%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILD+F+L VL+RTWHA C++C +C LAE+CF+R+G L+C+ DFF+R+GTKC
Sbjct: 1 CAGCDRAILDKFLLTVLDRTWHAECVRCADCRNILAERCFSRDGKLYCRTDFFRRYGTKC 60
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC G+ PT +VR+A+D VYHL CF C +C RQL+TG+E YL++D + +CK D+ KA
Sbjct: 61 GGCGQGLSPTDLVRKARDKVYHLRCFTCALCRRQLSTGEELYLLDDARFLCKEDFIRGKA 120
Query: 193 KDGN 196
N
Sbjct: 121 APAN 124
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 72 KCGGCGD-LILDRFILKVLERTWHARCLKCHECGAPLA---EKCFARNGLLFCKEDFFKR 127
KCGGCG L + K ++ +H RC C C L+ E + CKEDF +
Sbjct: 59 KCGGCGQGLSPTDLVRKARDKVYHLRCFTCALCRRQLSTGEELYLLDDARFLCKEDFIRG 118
Query: 128 FGTKCA---------------GCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDE 172
G M P + Q L+ + + +
Sbjct: 119 KAAPANITSLSSPICGRADEDGLTMPSPNRPLTPMTQGLIIAPPPSSDGIVIKTQRPSTP 178
Query: 173 FYLMEDRKLVCKPDYEAAKAKDG-------NCLDGDQPN--------KRPRTTITAKQLE 217
++D+ D E + DG N + P+ + PRTTI AKQLE
Sbjct: 179 SNTIDDKD---GNDSEGSVDGDGEGESRSDNPSESKSPDEGGAGSKRRGPRTTIKAKQLE 235
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
LK A++ +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+RLK+
Sbjct: 236 ILKNAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQ 282
>gi|5738958|dbj|BAA83422.1| LIM-homeodomain (LHX) protein 6.1a [Homo sapiens]
Length = 363
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|410043123|ref|XP_003312314.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pan troglodytes]
Length = 348
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|348570158|ref|XP_003470864.1| PREDICTED: LIM/homeobox protein Lhx6-like [Cavia porcellus]
Length = 363
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|390458307|ref|XP_002806566.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Callithrix jacchus]
Length = 363
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|348505058|ref|XP_003440078.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 361
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 114/219 (52%), Gaps = 27/219 (12%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC LI DRF+L+V + WH C++C CG L CF R+ L+CK D+ F +C
Sbjct: 17 CAGCHRLIRDRFLLRVTDGLWHEDCVRCAACGDALTNSCFLRDRKLYCKRDYADLFAVRC 76
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC I P ++V RA V+HL CF C +C+ +L TGD L E + L + Y A
Sbjct: 77 AGCTEAISPAELVMRAGAAVFHLRCFTCSVCSCRLQTGDRCVLREGQLLCAREGYHQCLA 136
Query: 193 KDGNCLDG---------------------------DQPNKRPRTTITAKQLETLKMAYNT 225
+ G + KRPRT +T +Q T K ++
Sbjct: 137 SPSSSETGKSDDEDEEVEEESGRITGRKVKSDDVESKRPKRPRTILTTQQRRTFKASFEV 196
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 197 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 235
>gi|167773589|gb|ABZ92229.1| LIM homeobox 6 [synthetic construct]
Length = 363
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|74355622|gb|AAI03937.1| LIM homeobox 6 [Homo sapiens]
gi|119607921|gb|EAW87515.1| LIM homeobox 6, isoform CRA_a [Homo sapiens]
Length = 348
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|390458311|ref|XP_003732089.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Callithrix jacchus]
Length = 381
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|5738960|dbj|BAA83423.1| LIM-homeodomain (LHX) protein 6.1b [Homo sapiens]
Length = 348
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|402896489|ref|XP_003911330.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6 [Papio
anubis]
Length = 390
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|440906624|gb|ELR56864.1| LIM/homeobox protein Lhx6, partial [Bos grunniens mutus]
Length = 360
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 64 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 123
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 124 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 182
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 183 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 242
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 243 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 278
>gi|301623765|ref|XP_002941184.1| PREDICTED: LIM/homeobox protein Lhx6-like [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 123/214 (57%), Gaps = 20/214 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L + C+ +N +FCK D+F RFGT
Sbjct: 96 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHNSCYIKNKEIFCKMDYFSRFGT 155
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 156 KCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 214
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 215 IENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 274
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAG 267
++L+ TGL RV+QVWFQN RA+ K+ G
Sbjct: 275 LQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHG 308
>gi|390458309|ref|XP_003732088.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Callithrix jacchus]
Length = 348
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|344271983|ref|XP_003407816.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Loxodonta africana]
Length = 377
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 158
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 217
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 218 IENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 277
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 278 LQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|281337700|gb|EFB13284.1| hypothetical protein PANDA_004030 [Ailuropoda melanoleuca]
Length = 360
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 64 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 123
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 124 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 182
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 183 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 242
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 243 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 278
>gi|300797193|ref|NP_001179777.1| LIM/homeobox protein Lhx6 [Bos taurus]
gi|296482368|tpg|DAA24483.1| TPA: LIM homeobox 6 isoform 1 [Bos taurus]
Length = 392
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|156543668|ref|XP_001605174.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Nasonia
vitripennis]
Length = 419
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 133/252 (52%), Gaps = 29/252 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C CG I D+++++V ER +H CL C EC APL+ C+AR+ +C+ D+ + +G KC
Sbjct: 59 CANCGRGIADKYVMRVNERNYHETCLSCCECSAPLSHVCYARDCKFYCRADYQRIYGAKC 118
Query: 133 AGCEMGIPPTQVVRRAQDL--------VYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
A C I ++V R + V+H++CF C +C QL G + L L CK
Sbjct: 119 ARCRQKIESNELVMRVPNCSQSALNGPVFHVDCFVCCICGDQLLRGAHYILRHGLPL-CK 177
Query: 185 PD-----YEAAKAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHV 233
+ Y +D + LD +P KRPRT +T+ Q K ++ SPKP R V
Sbjct: 178 REFQNDIYNMNSPQDDDLLDDSRPRDGRRGPKRPRTILTSVQRRQFKASFEISPKPCRKV 237
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLD 293
RE L++DTGL +RVVQVWFQN+RAK K+L++ A S PK+E K +
Sbjct: 238 REALAKDTGLSVRVVQVWFQNQRAKMKKLQRKAKTEPGSD--------KEPKEERKPE-S 288
Query: 294 SNFSHSHGKTAF 305
+ HSH A
Sbjct: 289 PHSDHSHYMNAM 300
>gi|395824119|ref|XP_003785318.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Otolemur garnettii]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|344271985|ref|XP_003407817.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Loxodonta africana]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 147
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 148 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 206
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 207 IENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 266
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 267 LQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|403266043|ref|XP_003925207.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 381
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 376
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V ER+WH C+KC C + L C+ R+ LL+CK D+ K F KC
Sbjct: 32 CAGCEAPIADRFLLRVNERSWHETCVKCAVCLSALTGTCYCRDRLLYCKHDYEKLFVRKC 91
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY----- 187
+ C I ++++ R Q VYHL CF C C R+L GDEF L E +L+C+ DY
Sbjct: 92 SSCLQVIGRSELIMRVQGQVYHLGCFTCCECERRLQRGDEFVLKEG-QLLCRMDYEKERE 150
Query: 188 ----------EAAKAKD------------GNCLDGDQPNKRPRTTITAKQLETLKMAYNT 225
E+ K++D + + +KRPRT +T +Q K ++
Sbjct: 151 MLAAISPTPTESVKSEDEDGGVGSGGGKGVDDGKEHKRSKRPRTILTTQQRRAFKASFEV 210
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K++ +
Sbjct: 211 SAKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKIAR 249
>gi|403266045|ref|XP_003925208.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|297270226|ref|XP_002800034.1| PREDICTED: LIM/homeobox protein Lhx6 [Macaca mulatta]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|148676721|gb|EDL08668.1| LIM homeobox protein 6, isoform CRA_b [Mus musculus]
Length = 380
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 94 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 153
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 154 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 212
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 213 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 272
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 273 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 308
>gi|345329744|ref|XP_001512364.2| PREDICTED: LIM/homeobox protein Lhx6 [Ornithorhynchus anatinus]
Length = 364
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 71 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQSSCYIKNKEIFCKVDYFSRFGT 130
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 131 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 189
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 190 IENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 249
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 250 LQKLADMTGLSRRVIQVWFQNCRARHKK 277
>gi|390458313|ref|XP_003732090.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 4 [Callithrix jacchus]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|397526998|ref|XP_003833397.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan paniscus]
Length = 377
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 76 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 135
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 136 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 194
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 195 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 254
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 255 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 290
>gi|334191689|ref|NP_001229262.1| LIM/homeobox protein Lhx6 isoform 3 [Homo sapiens]
gi|221041678|dbj|BAH12516.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|297270224|ref|XP_001088818.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Macaca mulatta]
Length = 377
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|328781496|ref|XP_001121365.2| PREDICTED: LIM/homeobox protein Awh-like [Apis mellifera]
Length = 332
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 125/217 (57%), Gaps = 18/217 (8%)
Query: 59 GIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNG 116
G++ MP A++ +CGGCG+ + +R +L V RTWH+RCL+C C PL ++ CF +
Sbjct: 29 GLIGPEMP-ANVMECGGCGERVRERTVLCVGGRTWHSRCLRCFACARPLHDQHSCFLKGM 87
Query: 117 LLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM 176
L+C+ D+ FG KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+
Sbjct: 88 RLYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL 147
Query: 177 EDRKLVCKPDYEAAKAKDGNCLDGDQPN------------KRPRTTITAKQLETLKMAYN 224
D +L+CK Y +GN D+ KR RTT T +QL L+ +
Sbjct: 148 -DARLLCKAHY--LDVVEGNNTSSDEGGDSESGHKSGNKAKRVRTTFTEEQLSVLQANFQ 204
Query: 225 TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P E+++ TGL RV QVWFQN RA++K+
Sbjct: 205 LDSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKK 241
>gi|410043125|ref|XP_003951564.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan troglodytes]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|395824117|ref|XP_003785317.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Otolemur garnettii]
Length = 377
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|328705917|ref|XP_001945631.2| PREDICTED: LIM/homeobox protein Lhx5-like [Acyrthosiphon pisum]
Length = 555
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 91/123 (73%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I+D+F+L VL+R WHA C+KC +C L++KC++R+G + CK DF++R+G KC
Sbjct: 117 CAGCDKPIMDKFLLNVLDRAWHAECVKCADCHGTLSDKCYSRDGKILCKPDFYRRYGKKC 176
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC GI PT +VR+A+D V+HLNCF C++C +QL+TG+E Y++ED K +CK DY + K
Sbjct: 177 NGCAQGISPTDLVRKARDKVFHLNCFTCMICRKQLSTGEELYVLEDNKFICKDDYISGKN 236
Query: 193 KDG 195
G
Sbjct: 237 GQG 239
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 71/100 (71%), Gaps = 4/100 (4%)
Query: 185 PDYEAAKAKDGNCLDGDQPNKR--PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
P+ ++ ++ + DG+ +KR PRTTI AKQLE LK A++ +PKP RH+REQL+++T
Sbjct: 322 PETRDSQTENKSPDDGNSGSKRRGPRTTIKAKQLEILKTAFSQTPKPTRHIREQLAKETS 381
Query: 243 LDMRVVQVWFQNRRAKEKRLKK--DAGRTRWSQYFRSMKG 280
L MRV+QVWFQN+R+KE+RLK+ GR + R M+G
Sbjct: 382 LPMRVIQVWFQNKRSKERRLKQLTSMGRGPFYGGARKMRG 421
>gi|134284359|ref|NP_055183.2| LIM/homeobox protein Lhx6 isoform 1 [Homo sapiens]
gi|297685270|ref|XP_002820218.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pongo abelii]
gi|221042862|dbj|BAH13108.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|134284361|ref|NP_954629.2| LIM/homeobox protein Lhx6 isoform 2 [Homo sapiens]
gi|297685272|ref|XP_002820219.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pongo abelii]
Length = 377
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|395824115|ref|XP_003785316.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Otolemur garnettii]
Length = 392
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|297270222|ref|XP_001089041.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Macaca mulatta]
Length = 392
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|297685274|ref|XP_002820220.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Pongo abelii]
Length = 366
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|444723048|gb|ELW63713.1| LIM/homeobox protein Lhx5 [Tupaia chinensis]
Length = 610
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 101/140 (72%), Gaps = 4/140 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+RFGTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK DY ++
Sbjct: 65 AGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSS 124
Query: 192 AKDGNCLDGDQPNKRPRTTI 211
K+G+ G +RP+ +
Sbjct: 125 LKEGSLNSG---FRRPKQEV 141
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 114/205 (55%), Gaps = 51/205 (24%)
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+RFGTKCAGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK
Sbjct: 168 RRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKD 227
Query: 186 DY-EAAKAKDG------NCLD-----------GDQPNKR--------------------- 206
DY ++ K+G +C D D P +
Sbjct: 228 DYLSSSSLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSG 287
Query: 207 -----PRTTITAKQLETLKMAYNTSPKPARHVREQLSQ-----DTGLDMRVV-QVWFQNR 255
PRTTI AKQLETLK A+ +PKP RH+R QL+Q L V+ QVWFQNR
Sbjct: 288 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIRAQLAQXKAPLTPSLQPCVLSQVWFQNR 347
Query: 256 RAKEKRLKK-DAGRTRWSQYFRSMK 279
R+KE+R+K+ A R +FRS +
Sbjct: 348 RSKERRMKQLSALGARRHAFFRSPR 372
>gi|322787267|gb|EFZ13403.1| hypothetical protein SINV_03010 [Solenopsis invicta]
Length = 334
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ + +R +L V RTWH+RCLKC C PL ++ CF R L+C+ D+ FG
Sbjct: 59 CGGCGESVRERTVLCVGGRTWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTFGA 118
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C + VRRA+D VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 119 KCAKCGRSVGAGDWVRRAKDRVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLDV 177
Query: 188 ----EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ ++D + G + + KR RTT T +QL L+ + P E+++Q T
Sbjct: 178 VEGNNTSSSEDCDSEHGGKGSKTKRVRTTFTEEQLAVLQANFQMDSNPDGQDLERIAQVT 237
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 238 GLSKRVTQVWFQNSRARQKK 257
>gi|332832786|ref|XP_001135172.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pan troglodytes]
Length = 392
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|133892051|ref|NP_001076596.1| LIM/homeobox protein Lhx6 isoform 4 [Mus musculus]
gi|148676720|gb|EDL08667.1| LIM homeobox protein 6, isoform CRA_a [Mus musculus]
Length = 348
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|301760410|ref|XP_002916006.1| PREDICTED: LIM/homeobox protein Lhx6-like [Ailuropoda melanoleuca]
Length = 390
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 89 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 148
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 149 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 207
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 208 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 267
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 268 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 303
>gi|344271981|ref|XP_003407815.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Loxodonta africana]
Length = 392
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 158
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 217
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 218 IENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 277
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 278 LQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|149038911|gb|EDL93131.1| LIM homeobox protein 6 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 373
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 87 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 146
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 147 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 205
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 206 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 265
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 266 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 301
>gi|157118344|ref|XP_001653181.1| lim homeobox protein [Aedes aegypti]
gi|108883304|gb|EAT47529.1| AAEL001373-PA [Aedes aegypti]
Length = 391
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 141/256 (55%), Gaps = 33/256 (12%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
C GCG I DR+ +K+ ++ WH +CL C C L + C+ +N L+CK+D++ R
Sbjct: 18 CEGCGQKIKDRYFMKLSPDQYWHEQCLLCCICHIQLNQSCYMKNTKLYCKDDYY-RVSRD 76
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
C GC I P ++V RA+ LVYHLNCF C C R L G+ F L KL+C+ D E
Sbjct: 77 CYGCGERIAPNEMVMRAKALVYHLNCFLCYTCNRPLQKGEPFSLRAG-KLICQHDLEKDM 135
Query: 192 -----------------AKDGNCL-------DGDQPNKRPRTTITAKQLETLKMAYNTSP 227
++D L DG + KRPRT +T+ Q K +++ SP
Sbjct: 136 YSTLHPMHPHHNQHTLFSEDDYLLEDGLRSRDGRRGPKRPRTILTSVQRRQFKASFDVSP 195
Query: 228 KPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG--GTSPK 285
KP R VRE L++DTGL +RVVQVWFQN+RAK K++ + +++ +Q + G S K
Sbjct: 196 KPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKISR---KSKAAQSNGNSDGDKSHSDK 252
Query: 286 DELKIDLDSNFS-HSH 300
++ I L+S S HSH
Sbjct: 253 EDKSIKLESPVSDHSH 268
>gi|354500655|ref|XP_003512414.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Cricetulus griseus]
Length = 366
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|148676722|gb|EDL08669.1| LIM homeobox protein 6, isoform CRA_c [Mus musculus]
Length = 395
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 94 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 153
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 154 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 212
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 213 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 272
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 273 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 308
>gi|1708558|sp|P50212.1|ISL2B_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2B; Short=Islet-2B
gi|64209|emb|CAA46102.1| isl-1 [Oncorhynchus tshawytscha]
gi|1094403|prf||2106150A LIM domain homeobox protein
Length = 340
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 126/227 (55%), Gaps = 34/227 (14%)
Query: 68 ASIPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
+ I C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 4 SGIAMCVGCGSQIHDQYILRVAPDLEWHAACLKCSECSQYLDETCTCFVRDGKTYCKRDY 63
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ FG KCA C +G + +V RA+D VYH+ CF C +C+RQL GDEF L D +L+C+
Sbjct: 64 VRLFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRQLVPGDEFSL-RDEELLCR 122
Query: 185 PDY----EAAKA----KDGNCLDGD----------QP------------NKRPRTTITAK 214
D+ E A A GN L QP R RT + K
Sbjct: 123 ADHGLLLERASAGSPISPGNILSRSFHIADPVSVRQPPHRNHVHKQSEKTTRVRTVLNEK 182
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 183 QLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 229
>gi|344241263|gb|EGV97366.1| LIM/homeobox protein Lhx6 [Cricetulus griseus]
Length = 363
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|307182932|gb|EFN69942.1| LIM/homeobox protein Awh [Camponotus floridanus]
Length = 458
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ +R +L V RTWH+RCLKC+ C PL ++ CF R L+C+ D+ FG
Sbjct: 184 CGGCGERGRERTVLCVGGRTWHSRCLKCYACARPLHDQHSCFLRGMRLYCRHDYALTFGA 243
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C + VRRA+D VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 244 KCAKCGRSMGAGDWVRRAKDRVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLDV 302
Query: 188 ----EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ ++D + G + + KR RTT T +QL L+ + P E+++Q T
Sbjct: 303 VEGNNTSSSEDCDSEHGGKGSKTKRVRTTFTEEQLAVLQANFQMDSNPDGQDLERIAQVT 362
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 363 GLSKRVTQVWFQNSRARQKK 382
>gi|157137277|ref|XP_001663968.1| arrowhead [Aedes aegypti]
gi|108869746|gb|EAT33971.1| AAEL013763-PA, partial [Aedes aegypti]
Length = 211
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 12/210 (5%)
Query: 63 VYMPIAS-IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
++ P+ + CGGC + I DR+I +V WH CL+C C L + C+ ++G ++
Sbjct: 2 LFFPLQTEFKSCGGCAEQITDRYIFEVSGCAWHGSCLRCSICYCSLERQVSCYFKDGEVY 61
Query: 120 CKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDR 179
CK D+ K+F CA C I P+ VRRA+D V+HL CFAC C RQL+TG++F +++DR
Sbjct: 62 CKTDYIKKFKASCAKCSRSISPSDWVRRARDFVFHLACFACDSCGRQLSTGEQFAIIDDR 121
Query: 180 KLVCKPDYE------AAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPAR 231
++CK Y ++DG +G+ N KR RTT T +Q++ L+ + P
Sbjct: 122 -VLCKTHYMELIDDGTTSSEDGCDAEGNSKNKTKRIRTTFTEEQIQILQANFQIDSNPDG 180
Query: 232 HVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
E+++ TGL RV QVWFQN RA++K+
Sbjct: 181 QDLERIALATGLSKRVTQVWFQNSRARQKK 210
>gi|395505631|ref|XP_003757143.1| PREDICTED: LIM/homeobox protein Lhx6 [Sarcophilus harrisii]
Length = 363
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 129
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 130 KCARCGRQIFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 188
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 189 IENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 248
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 249 LQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|133892446|ref|NP_001076595.1| LIM/homeobox protein Lhx6 isoform 3 [Mus musculus]
gi|341940899|sp|Q9R1R0.2|LHX6_MOUSE RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|40787713|gb|AAH65077.1| Lhx6 protein [Mus musculus]
Length = 363
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|334311482|ref|XP_001364897.2| PREDICTED: LIM/homeobox protein Lhx6 [Monodelphis domestica]
Length = 391
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 98 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 157
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 158 KCARCGRQIFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 216
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 217 IENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 276
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 277 LQKLADMTGLSRRVIQVWFQNCRARHKK 304
>gi|354500653|ref|XP_003512413.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Cricetulus griseus]
Length = 377
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|133893073|ref|NP_001076594.1| LIM/homeobox protein Lhx6 isoform 2 [Mus musculus]
Length = 377
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|449478466|ref|XP_002188127.2| PREDICTED: LIM/homeobox protein Lhx6 [Taeniopygia guttata]
Length = 421
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK D+F RFGT
Sbjct: 128 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQHSCYIKNKEIFCKMDYFSRFGT 187
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 188 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 246
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA+ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 247 IENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 306
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 307 LQKLADMTGLSRRVIQVWFQNCRARHKK 334
>gi|157821727|ref|NP_001101307.1| LIM/homeobox protein Lhx6 [Rattus norvegicus]
gi|149038910|gb|EDL93130.1| LIM homeobox protein 6 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 388
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 87 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 146
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 147 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 205
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 206 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 265
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 266 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 301
>gi|295656539|gb|ADG26732.1| Lhx1/5 [Platynereis dumerilii]
Length = 291
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 95/124 (76%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WHA+C++C EC A L +KCF+R G L+C++DFF+RFGTKC
Sbjct: 4 CAGCDRPILDRFLLNVLDRAWHAQCVQCTECKAHLTDKCFSREGKLYCRDDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC GI P +VRRA++ V+HL CF C++C +QL+TG+E Y++++ K +CK DY ++K
Sbjct: 64 GGCSQGISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEELYVLDENKFICKEDYLSSKL 123
Query: 193 KDGN 196
+ G+
Sbjct: 124 QGGS 127
>gi|339236177|ref|XP_003379643.1| LIM/homeobox protein Awh [Trichinella spiralis]
gi|316977684|gb|EFV60755.1| LIM/homeobox protein Awh [Trichinella spiralis]
Length = 902
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C GCG+LI DR++L+V ++ WH CL+C C A L + C+ + +FCK + ++F
Sbjct: 623 CSGCGNLIYDRYLLQVNQQFWHVNCLRCSSCTALLDKLPSCYLKEDKVFCKMCYQRQFSV 682
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
KC C I VRRA+ VYHL CFAC C RQL+TG+EF L +D +++CK Y
Sbjct: 683 KCDRCNQVIQSNHWVRRARQYVYHLACFACDSCQRQLSTGEEFAL-QDSRVLCKQHYMEL 741
Query: 191 KAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
D + Q KR RTT T +QL+ L+ + P E+++Q TGL RV QV
Sbjct: 742 LEGDNGKVHHKQKTKRVRTTFTEEQLQILQANFQIDSNPDGQDLERIAQGTGLSKRVTQV 801
Query: 251 WFQNRRAKEKR 261
WFQN RA++K+
Sbjct: 802 WFQNSRARQKK 812
>gi|148676723|gb|EDL08670.1| LIM homeobox protein 6, isoform CRA_d [Mus musculus]
Length = 388
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 87 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 146
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 147 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 205
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 206 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 265
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 266 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 301
>gi|47551255|ref|NP_999810.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
gi|33286229|gb|AAQ01662.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
Length = 480
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC A L EKCF+R G LFCK DFF+R+GTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRPWHVKCVQCCECKAKLTEKCFSREGKLFCKNDFFRRYGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VRRA+ V+HLNCF C++C +QL+TG+E Y++++ + +CK DY +
Sbjct: 65 AGCLQGILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICKEDYLTKCQ 124
Query: 192 AKDGNCLDGDQPNKRPRTTITA 213
+ D D NK P + TA
Sbjct: 125 LRRPELPDNDHFNKPPGSCNTA 146
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 235 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 294
Query: 266 AGRTRWSQYFRSMK 279
A R +FR+ +
Sbjct: 295 ALGARRHHFFRNPR 308
>gi|410923575|ref|XP_003975257.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 310
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 137/254 (53%), Gaps = 23/254 (9%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKED 123
P + +C CG I DR++LKV WH CL+C C A L + C+ +N +FCK D
Sbjct: 25 PPPAKNQCASCGMEIQDRYLLKVNNLNWHLGCLECSVCRASLRQHNSCYVKNKEIFCKLD 84
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+F RFGTKCA C + + VRRA+ VYHL CFAC C RQL+TG+EF L+E R ++C
Sbjct: 85 YFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGR-VLC 143
Query: 184 KPDYE--------AAKAKDGNCLDG----DQ-----PNKRPRTTITAKQLETLKMAYNTS 226
+ Y+ AA+ G L+G DQ P KR RT+ TA+QL+ ++ +
Sbjct: 144 RSHYDIMLDNLRRAAENGTGLTLEGALPSDQDCQPKPAKRARTSFTAEQLQVMQSQFAQD 203
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKD 286
P ++L++ TGL RV+QVWFQN RA R KK + +SQ + TS D
Sbjct: 204 NNPDAQTLQKLAEMTGLSRRVIQVWFQNCRA---RHKKQPPQNSFSQSAPLSRMPTSLPD 260
Query: 287 ELKIDLDSNFSHSH 300
++ S H
Sbjct: 261 DIPYSPFSGLDQPH 274
>gi|158296017|ref|XP_001237835.2| AGAP006537-PA [Anopheles gambiae str. PEST]
gi|157016310|gb|EAU76621.2| AGAP006537-PA [Anopheles gambiae str. PEST]
Length = 271
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 117/199 (58%), Gaps = 11/199 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CG C + I DR+I +V WH CL+C C PL + C+ R+G ++CK D+ K+F T
Sbjct: 8 CGSCAEPITDRYIFEVNGSAWHGSCLRCTVCFCPLERQVSCYLRDGDMYCKSDYIKKFKT 67
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
CA C I T VRRA++ V+HL CFAC C RQL+TG++F + EDR ++CK Y
Sbjct: 68 SCAKCARSISATDWVRRAREYVFHLACFACDSCGRQLSTGEQFAICEDR-VLCKTHYMEL 126
Query: 188 ---EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
++DG DG+ N KR RTT T +Q++ L+ + P E+++ TG
Sbjct: 127 IDDGTTSSEDGLDADGNGKNKTKRIRTTFTEEQIQILQANFQVDSNPDGQDLERIALATG 186
Query: 243 LDMRVVQVWFQNRRAKEKR 261
L RV QVWFQN RA++K+
Sbjct: 187 LSKRVTQVWFQNSRARQKK 205
>gi|354500651|ref|XP_003512412.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Cricetulus griseus]
Length = 392
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|392925295|ref|NP_001256981.1| Protein LIM-6, isoform a [Caenorhabditis elegans]
gi|351020894|emb|CCD62867.1| Protein LIM-6, isoform a [Caenorhabditis elegans]
Length = 310
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 26/218 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C GCG LI DR+I +V+E ++H CL+C C L+ +KCF+R+G ++C+ D +G
Sbjct: 42 CSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDHQMLYGK 101
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C C + PT +V R + YH CF+C C R N GDE+++ D ++ C+ DY++
Sbjct: 102 RCRRCMTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDEYHVF-DGEVFCRNDYQSI 160
Query: 191 KAKDGNCLDGDQPN----------------KRPRTTITAKQLETLKMAYNTSPKPARHVR 234
N P+ KRPRT + A+Q K A+ S KP+R VR
Sbjct: 161 ----CNFQTISNPDPLMEEVVRSEIHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVR 216
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKRLKK---DAGRT 269
EQL+ +TGL +RVVQVWFQN+RAK K+L K D+G T
Sbjct: 217 EQLANETGLSVRVVQVWFQNQRAKIKKLNKKDSDSGDT 254
>gi|410978997|ref|XP_003995873.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Felis catus]
Length = 404
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 258
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 259 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|47221465|emb|CAG08127.1| unnamed protein product [Tetraodon nigroviridis]
Length = 535
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 20/215 (9%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKED 123
P + +C CG I DR++LKV WH CL+C C A L + C+ +N +FCK D
Sbjct: 12 PPPAKNQCASCGMDIQDRYLLKVNNLNWHLGCLECSVCRASLRQHNSCYVKNKEIFCKLD 71
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+F RFGTKCA C + + VRRA+ VYHL CFAC C RQL+TG+EF L+E R ++C
Sbjct: 72 YFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGR-VLC 130
Query: 184 KPDYE--------AAKAKDGNCLDG----DQ-----PNKRPRTTITAKQLETLKMAYNTS 226
+ Y+ AA+ G L+G DQ P KR RT+ TA+QL+ ++ +
Sbjct: 131 RSHYDIMLDNLRRAAENGTGLTLEGALPSDQDCQPKPAKRARTSFTAEQLQVMQSQFAQD 190
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 191 NNPDAQTLQKLAEMTGLSRRVIQVWFQNCRARHKK 225
>gi|133891794|ref|NP_032526.2| LIM/homeobox protein Lhx6 isoform 1 [Mus musculus]
Length = 392
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|10257388|dbj|BAB13725.1| transcription factor HpLim1 [Hemicentrotus pulcherrimus]
Length = 480
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC A L EKCF+R G LFCK DFF+R+GTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRPWHVKCVQCCECKAKLTEKCFSREGKLFCKNDFFRRYGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VRRA+ V+HLNCF C++C +QL+TG+E Y++++ + +CK DY +
Sbjct: 65 AGCLQGILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICKEDYLTKCQ 124
Query: 192 AKDGNCLDGDQPNKRPRTTITA 213
+ D D NK P + TA
Sbjct: 125 LRRPELPDNDHFNKPPGSCNTA 146
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 235 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 294
Query: 266 AGRTRWSQYFRSMK 279
A R +FR+ +
Sbjct: 295 ALGARRHHFFRNPR 308
>gi|167859076|gb|ACA04473.1| Lim1 [Strongylocentrotus purpuratus]
Length = 480
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC A L EKCF+R G LFCK DFF+R+GTKC
Sbjct: 5 CAGCERPILDRFLLNVLDRPWHVKCVQCCECKAKLTEKCFSREGKLFCKNDFFRRYGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-EAAK 191
AGC GI P+ +VRRA+ V+HLNCF C++C +QL+TG+E Y++++ + +CK DY +
Sbjct: 65 AGCLQGILPSDLVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICKEDYLTKCQ 124
Query: 192 AKDGNCLDGDQPNKRPRTTITA 213
+ D D NK P + TA
Sbjct: 125 LRRPELPDNDHFNKPPGSCNTA 146
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 235 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 294
Query: 266 AGRTRWSQYFRSMK 279
A R +FR+ +
Sbjct: 295 ALGARRHHFFRNPR 308
>gi|332029130|gb|EGI69141.1| LIM/homeobox protein Awh [Acromyrmex echinatior]
Length = 292
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 18/242 (7%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG 129
+CGGCG+ + +R IL V RTWH+RCL+C C PL ++ CF R ++C+ D+ + FG
Sbjct: 2 ECGGCGERVRERTILCVGGRTWHSRCLRCSACARPLHDQHSCFQRGMRVYCRHDYDRTFG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 62 AKCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLD 120
Query: 188 ----------EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
E ++ G+ G KR RTT T +QL L+ + P E++
Sbjct: 121 VVEGNNNSSAEGGDSESGH--KGGNKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERI 178
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFS 297
+ TGL R+ QVWFQN RA++K+ G+ + +S T+ ++ ++ + +
Sbjct: 179 AHVTGLSKRITQVWFQNSRARQKK-HLHTGKMKGQHVHQSPPNSTASPNDFGRHINLHLT 237
Query: 298 HS 299
+S
Sbjct: 238 YS 239
>gi|426248250|ref|XP_004017877.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Ovis aries]
Length = 366
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCL------------DGDQPNKRP------------RTTITAKQLET 218
A + L G QP+ RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDPGSGRQPSLRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|296236843|ref|XP_002763501.1| PREDICTED: insulin gene enhancer protein ISL-2 [Callithrix jacchus]
Length = 359
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKD---------------GNCLDGDQPNKRP------------RTTITAKQLET 218
E A A + G QP RP RT + KQL T
Sbjct: 146 LLERAAADSPRSPGPLPGARGLHLSDPGSGRQPTLRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|117645548|emb|CAL38240.1| hypothetical protein [synthetic construct]
Length = 363
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CF C C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFTCFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|296475432|tpg|DAA17547.1| TPA: ISL LIM homeobox 2 [Bos taurus]
gi|440909295|gb|ELR59218.1| Insulin enhancer protein ISL-2 [Bos grunniens mutus]
Length = 359
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCL------------DGDQPNKRP------------RTTITAKQLET 218
A + L G QP+ RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDPGSGRQPSLRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|348505840|ref|XP_003440468.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oreochromis
niloticus]
Length = 359
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 125/228 (54%), Gaps = 35/228 (15%)
Query: 68 ASIPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
+ I C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 22 SGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECNQHLDETCTCFVRDGKTYCKRDY 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ FG KCA C MG + +V RA+D VYH+ CF C +C+R L GDEF L +D +L+C+
Sbjct: 82 ARLFGIKCAKCNMGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDD-ELLCR 140
Query: 185 PDY--EAAKAKDGNCLDGDQPNKRP-----------------------------RTTITA 213
D+ +A G+ L + RP RT +
Sbjct: 141 ADHGLMMERASAGSPLSPGNIHNRPLHISDPVSVRHPPHHRNHVHKPSEKTTRVRTVLNE 200
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
KQL TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 201 KQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|348533440|ref|XP_003454213.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 392
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 20/215 (9%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKED 123
P A+ +C CG I DR++LKV WH CL+C C A L + C+ +N ++CK D
Sbjct: 107 PPAAKNQCASCGMEIHDRYLLKVNNLNWHLGCLECSVCRASLRQHSSCYVKNKEIYCKLD 166
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+F RFGTKCA C + + VRRA+ VYHL CFAC C RQL+TG+EF L+E R ++C
Sbjct: 167 YFSRFGTKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGR-VLC 225
Query: 184 KPDYE--------AAKAKDGNCLDG----DQ-----PNKRPRTTITAKQLETLKMAYNTS 226
+ Y+ AA+ G L+G DQ P KR RT+ TA+QL+ ++ +
Sbjct: 226 RSHYDIMLDNLRRAAENGTGLTLEGALPSDQDCQPKPAKRARTSFTAEQLQVMQTQFAQD 285
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 286 NNPDAQTLQKLAEMTGLSRRVIQVWFQNCRARHKK 320
>gi|395822580|ref|XP_003784594.1| PREDICTED: insulin gene enhancer protein ISL-2 [Otolemur garnettii]
Length = 359
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCLDGD------------QPNKRP------------RTTITAKQLET 218
A + L G QP+ RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGQLPGARGLHLPDPGSARQPSLRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|170034024|ref|XP_001844875.1| arrowhead [Culex quinquefasciatus]
gi|167875283|gb|EDS38666.1| arrowhead [Culex quinquefasciatus]
Length = 257
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 136/251 (54%), Gaps = 29/251 (11%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGC + I DR+I +V WH CL+C C PL + C+ ++G ++CK D+ K++
Sbjct: 8 CGGCSEQITDRYIFEVSGCAWHGACLRCSVCYCPLERQVSCYFKDGEVYCKTDYIKKYKA 67
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
C C I P+ VRRA+D V+HL CF+C C+RQL+TG++F +++DR ++CK Y
Sbjct: 68 ACTKCSRSISPSDWVRRARDFVFHLACFSCDTCSRQLSTGEQFAIIDDR-VLCKAHYMEL 126
Query: 189 ----AAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
++DG +DG N KR RTT T +Q++ L+ + P E+++ TG
Sbjct: 127 IDDGTTSSEDGCDVDGTGKNKTKRIRTTFTEEQIQILQANFQIDSNPDGQDLERIALATG 186
Query: 243 LDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKG------------GTSPKDELKI 290
L RV QVWFQN RA++K+ R + F ++ G +P DE +
Sbjct: 187 LSKRVTQVWFQNSRARQKKHVP-----RGQELFNGLRSDMNNNSSSNDSPGGTPMDECAM 241
Query: 291 DLDSNFSHSHG 301
S F+H HG
Sbjct: 242 AKASIFNH-HG 251
>gi|328708271|ref|XP_001949712.2| PREDICTED: LIM/homeobox protein Awh-like [Acyrthosiphon pisum]
Length = 346
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 122/209 (58%), Gaps = 13/209 (6%)
Query: 64 YMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCK 121
Y+ S+ +C GC D I DRF+LKV ++ WH CL+C C L ++ CF ++ ++C+
Sbjct: 53 YVKTESL-QCRGCSDPITDRFLLKVSDKIWHVSCLRCCVCNLVLEDEPSCFIKDDSIYCR 111
Query: 122 EDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKL 181
+D+ + FGT C+ C GI + VR+A+D VYHL CF C C RQLNTG+EF L E R +
Sbjct: 112 QDYARSFGTVCSKCSKGISASHWVRKARDHVYHLACFRCDACDRQLNTGEEFALHEGR-V 170
Query: 182 VCKPDY---------EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+CKP Y +++ D KR RTT T +QL+ L+ + P
Sbjct: 171 LCKPHYLDIVDGGTTSSSEGGDSESYHSKNKAKRVRTTFTEEQLQVLQANFQLDSNPDGQ 230
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
E+++Q TGL RV QVWFQN RA++K+
Sbjct: 231 DLERIAQITGLSKRVTQVWFQNSRARQKK 259
>gi|332844416|ref|XP_003314842.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Pan
troglodytes]
gi|426379890|ref|XP_004056620.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Gorilla
gorilla gorilla]
Length = 360
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 124/224 (55%), Gaps = 36/224 (16%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKD----------------GNCLDGDQPNKRP------------RTTITAKQLE 217
E A A + G QP RP RT + KQL
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPADAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLH 205
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 249
>gi|198469300|ref|XP_001354984.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
gi|198146805|gb|EAL32040.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
Length = 528
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|357631671|gb|EHJ79140.1| lim1 [Danaus plexippus]
Length = 162
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 95/120 (79%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILD+F+L VLER WHA C++C +C APLA+KC++R+ LFC+ DFF+R+GTKC
Sbjct: 3 CAGCEKPILDKFLLHVLERAWHAACVRCADCRAPLADKCYSRDNKLFCRNDFFRRYGTKC 62
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+GC GI P+ +VR+A++ V+HLNCF C++C +QL+TG+E Y+++D K +CK DY A KA
Sbjct: 63 SGCGHGISPSDLVRKAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKEDYLAGKA 122
>gi|109081997|ref|XP_001105068.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Macaca
mulatta]
Length = 359
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 123/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCLDGD------------QPNKRP------------RTTITAKQLET 218
A + L G QP RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGSRGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|195163209|ref|XP_002022444.1| GL13034 [Drosophila persimilis]
gi|194104436|gb|EDW26479.1| GL13034 [Drosophila persimilis]
Length = 332
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
+IP C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF+R+
Sbjct: 21 AIP-CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRY 79
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK DY
Sbjct: 80 GTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYL 139
Query: 189 AAKA 192
KA
Sbjct: 140 LGKA 143
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QV
Sbjct: 247 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQV 290
>gi|194769270|ref|XP_001966729.1| GF19125 [Drosophila ananassae]
gi|190618250|gb|EDV33774.1| GF19125 [Drosophila ananassae]
Length = 500
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|5738954|dbj|BAA83420.1| LIM-homeodomain (LHX) protein 6.1b [Mus musculus]
Length = 348
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKKAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TG RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGFSRRVIQVWFQNCRARHKK 276
>gi|209737368|gb|ACI69553.1| Insulin gene enhancer protein isl-1 [Salmo salar]
Length = 356
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 122/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYVR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERATMGSGDPLSPLHPARPLQMAADPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|195480019|ref|XP_002101106.1| GE17432 [Drosophila yakuba]
gi|194188630|gb|EDX02214.1| GE17432 [Drosophila yakuba]
Length = 500
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|194890894|ref|XP_001977402.1| GG19023 [Drosophila erecta]
gi|190649051|gb|EDV46329.1| GG19023 [Drosophila erecta]
Length = 504
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|18858205|ref|NP_572505.1| Lim1, isoform A [Drosophila melanogaster]
gi|39841014|gb|AAD55417.2|AF181631_1 GH04929p [Drosophila melanogaster]
gi|6252420|dbj|BAA86224.1| dLim1 [Drosophila melanogaster]
gi|22833027|gb|AAF46413.2| Lim1, isoform A [Drosophila melanogaster]
gi|220943666|gb|ACL84376.1| Lim1-PA [synthetic construct]
gi|220953602|gb|ACL89344.1| Lim1-PA [synthetic construct]
Length = 505
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|47225812|emb|CAF98292.1| unnamed protein product [Tetraodon nigroviridis]
Length = 360
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 125/228 (54%), Gaps = 35/228 (15%)
Query: 68 ASIPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
+ I C GCG I D++I++V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 22 SGIAMCVGCGSQIHDQYIMRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ FG KCA C +G + +V RA+D VYH+ CF C +C R L GDEF L ED +L+C+
Sbjct: 82 ARIFGIKCAKCNVGFCSSDLVMRARDNVYHMECFRCSVCCRHLLPGDEFSLRED-ELLCR 140
Query: 185 PDY--EAAKAKDGNCLDGDQPNKRP-----------------------------RTTITA 213
D+ +A G+ L + RP RT +T
Sbjct: 141 ADHCLLMERASAGSPLSPGPIHSRPLHISDAVSVRHPPHHRNHVHKQSEKTTRIRTVLTE 200
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
KQL TL+ YN +P+P ++EQL + TGL RVV+VWFQN+R K+K+
Sbjct: 201 KQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVVRVWFQNKRCKDKK 248
>gi|195049216|ref|XP_001992673.1| GH24084 [Drosophila grimshawi]
gi|193893514|gb|EDV92380.1| GH24084 [Drosophila grimshawi]
Length = 501
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|395501088|ref|XP_003754930.1| PREDICTED: insulin gene enhancer protein ISL-2 [Sarcophilus
harrisii]
Length = 335
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 124/224 (55%), Gaps = 36/224 (16%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++ILKV + WHA CLKC EC L E C F RNG +CK D+ + FG
Sbjct: 2 CVGCGTQIHDQYILKVSPDLEWHAACLKCAECSQYLDETCTCFVRNGKTYCKRDYIRLFG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA++ VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 62 IKCAKCKVGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHSL 120
Query: 188 -----EAAKAKDGNCL-------------DGDQPNKRP------------RTTITAKQLE 217
A + L G QP+ RP RT + KQL
Sbjct: 121 LLDRASAESPRSPGHLASSRSLHLSAEPGSGRQPSLRPHVHKQTEKTTRVRTVLNEKQLH 180
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 181 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 224
>gi|431920332|gb|ELK18367.1| Insulin protein enhancer protein ISL-2 [Pteropus alecto]
Length = 306
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 124/222 (55%), Gaps = 34/222 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 31 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 90
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 91 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 149
Query: 188 --EAAKAKDGNCLD--------------GDQPNKRP------------RTTITAKQLETL 219
E A A + G QP RP RT + KQL TL
Sbjct: 150 LLERAAATSPSSPGPLPARGLHLPDPGAGRQPAPRPHAHKQAEKTTRVRTVLNEKQLHTL 209
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 210 RTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 251
>gi|405971991|gb|EKC36790.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
Length = 343
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 115/207 (55%), Gaps = 17/207 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG-TK 131
C C I DRF+L+V++ WH +C+ C C L CF RN +CK D+ K F
Sbjct: 10 CASCQYPIEDRFLLRVMDLPWHEQCVVCSVCQTQLTRTCFHRNRQFYCKNDYDKLFRRAS 69
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--- 188
C GC M + PT+ V RA+ VYH CF C+ C +QL GD + +D +L C D+E
Sbjct: 70 CNGCGMFVIPTEFVMRAKGYVYHQQCFNCIECGQQLRQGDHCAI-KDGQLFCGIDFEKEM 128
Query: 189 -----------AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
+ +DG G P KRPRT +T Q K A+ +PKP R VREQL
Sbjct: 129 NMMALSPRSDGSDSYEDGESDCGKHP-KRPRTILTTSQRRKFKSAFELNPKPCRKVREQL 187
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 188 AAETGLSVRVVQVWFQNQRAKVKKLAR 214
>gi|322787264|gb|EFZ13400.1| hypothetical protein SINV_02203 [Solenopsis invicta]
Length = 333
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 138/254 (54%), Gaps = 20/254 (7%)
Query: 60 IMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGL 117
+ P P S+ +CGGCG+ + +R +L V RTWH+RCL+C C PL ++ CF R
Sbjct: 33 VGPETSP--SVMECGGCGERVRERTVLCVGGRTWHSRCLRCCACARPLHDQHSCFLRGMR 90
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
++C+ D+ FG KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+
Sbjct: 91 VYCRHDYALAFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL- 149
Query: 178 DRKLVCKPDY------------EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNT 225
D +L+CK Y E ++ G+ G KR RTT T +QL L+ +
Sbjct: 150 DARLLCKAHYLDVVEGNNTSSDEGGDSESGH--KGGNKAKRVRTTFTEEQLSVLQANFQL 207
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPK 285
P E+++ TGL RV QVWFQN RA++K+ G+ + +S T+
Sbjct: 208 DSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKK-HLHTGKMKGQHVHQSPPNSTASP 266
Query: 286 DELKIDLDSNFSHS 299
++ ++ + ++S
Sbjct: 267 NDFGRHINLHLTYS 280
>gi|21956641|ref|NP_665804.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
gi|114658283|ref|XP_001147206.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Pan
troglodytes]
gi|297697192|ref|XP_002825752.1| PREDICTED: insulin gene enhancer protein ISL-2 [Pongo abelii]
gi|426379888|ref|XP_004056619.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Gorilla
gorilla gorilla]
gi|20978495|sp|Q96A47.1|ISL2_HUMAN RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|15080438|gb|AAH11967.1| ISL LIM homeobox 2 [Homo sapiens]
gi|15082435|gb|AAH12136.1| ISL LIM homeobox 2 [Homo sapiens]
gi|119619626|gb|EAW99220.1| ISL2 transcription factor, LIM/homeodomain, (islet-2) [Homo
sapiens]
gi|167773881|gb|ABZ92375.1| ISL LIM homeobox 2 [synthetic construct]
gi|193785483|dbj|BAG50849.1| unnamed protein product [Homo sapiens]
Length = 359
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKD---------------GNCLDGDQPNKRP------------RTTITAKQLET 218
E A A + G QP RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|410921222|ref|XP_003974082.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 324
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 21/216 (9%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKED 123
P+ C CG+ I+D+++LKV + WH RCL C C L C+ + +FCK D
Sbjct: 48 PLMGRAVCANCGEEIVDKYLLKVNDLCWHVRCLSCSVCHTSLGSHTSCYIKEKEVFCKMD 107
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+F+R+GT CA C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C
Sbjct: 108 YFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLC 166
Query: 184 KPDYEAA------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNT 225
+ Y+ + GN ++ + +P+KR RT+ TA QL+ ++ +
Sbjct: 167 RVHYDCMLDNLKRAVEKGNSVNMEGAVPTEQEINQPKPSKRARTSFTADQLQVMQAQFAQ 226
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 227 DNNPDAQTLQKLAEQTGLSRRVIQVWFQNCRARHKK 262
>gi|195400977|ref|XP_002059092.1| GJ15180 [Drosophila virilis]
gi|194141744|gb|EDW58161.1| GJ15180 [Drosophila virilis]
Length = 498
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|195130757|ref|XP_002009817.1| GI15570 [Drosophila mojavensis]
gi|193908267|gb|EDW07134.1| GI15570 [Drosophila mojavensis]
Length = 503
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY KA
Sbjct: 140 DYLLGKA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|410912158|ref|XP_003969557.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Takifugu
rubripes]
Length = 359
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 123/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++ILKV + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQYILKVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
KCA C +G + +V RA+D VYH+ CF C +C+RQL GDEF L E+ +L+C+ D+
Sbjct: 87 IKCAKCNLGFSSSDLVMRARDHVYHIECFRCSVCSRQLLPGDEFSLREE-ELLCRADHSI 145
Query: 190 --AKAKDGNCLD-----------------------------GDQPNKRPRTTITAKQLET 218
K+ G+ + + R RT + KQL T
Sbjct: 146 LLEKSSAGSPISPGHLHSNRALHLTDPVSMRQATHRNHVHKQSEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|348539204|ref|XP_003457079.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Oreochromis niloticus]
Length = 349
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 121/223 (54%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + +G
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDESCTCFVRDGKTYCKRDYIRLYG 76
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D+
Sbjct: 77 IKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRADHDV 135
Query: 188 -EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQLET 218
E A G+ L QP RP RT + KQL T
Sbjct: 136 VERASLGPGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHT 195
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 196 LRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|383857877|ref|XP_003704430.1| PREDICTED: LIM/homeobox protein Awh-like [Megachile rotundata]
Length = 371
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 18/242 (7%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG 129
+CGGCG+ + +R +L V RTWH+RCL+C C PL ++ CF + L+C+ D+ FG
Sbjct: 81 ECGGCGERVRERTVLCVGGRTWHSRCLRCFACARPLHDQHSCFLKGMRLYCRHDYALTFG 140
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 141 AKCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHY-- 197
Query: 190 AKAKDGNCLDGDQPN------------KRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
+GN D+ KR RTT T +QL L+ + P E++
Sbjct: 198 LDVVEGNNTSSDEGGDSESGHKSGNKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERI 257
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFS 297
+ TGL RV QVWFQN RA++K+ G+T+ +S T+ + ++ + +
Sbjct: 258 AHVTGLSKRVTQVWFQNSRARQKK-HLHTGKTKGQHVHQSPPNSTTSTGDFSRHINLHLT 316
Query: 298 HS 299
+S
Sbjct: 317 YS 318
>gi|341898967|gb|EGT54902.1| CBN-LIM-6 protein [Caenorhabditis brenneri]
Length = 316
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 125/213 (58%), Gaps = 17/213 (7%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C GC LI DR+I +V++ ++H CL+C C PL+ +KCF+R+G ++C++ +G
Sbjct: 42 CSGCSCLIKDRYIYRVMDESYHEPCLRCSICQLPLSSLKKCFSRHGNIYCEQHHQMLYGK 101
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C C + PT +V R + YH +CF+C+ C N GDE+++ D ++ C+ D+++
Sbjct: 102 RCRRCTAILLPTDIVHRVHYMYYHAHCFSCLSCQGPFNLGDEYHVF-DGEVFCRNDFQSL 160
Query: 191 KAKDGNCLDGD-------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
D + KRPRT + A+Q K A+ S KP+R VREQL
Sbjct: 161 CNYQNTISTADPMLDEAVRSDIHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQL 220
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRL-KKDAGRT 269
+ +TGL +RVVQVWFQN+RAK K++ KKD+ T
Sbjct: 221 ANETGLSVRVVQVWFQNQRAKIKKMNKKDSDST 253
>gi|170032119|ref|XP_001843930.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871879|gb|EDS35262.1| lim homeobox protein [Culex quinquefasciatus]
Length = 400
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 138/268 (51%), Gaps = 43/268 (16%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
C GCG I DR+ +K+ ++ WH +CL C C L CF +N ++CK+D+++ +G
Sbjct: 17 CEGCGQKIKDRYFMKISPDQYWHEQCLLCCICNIQLNHSCFTKNTKVYCKDDYYRIYGLS 76
Query: 131 -----------------KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEF 173
+C GC I P ++V RA++ V+HLNCF C C R L G+ F
Sbjct: 77 QLQQKQQNQQHQQKVSRECYGCGERIAPNEMVMRAKNHVFHLNCFLCYTCNRPLQKGEPF 136
Query: 174 YLMEDRKLVCKPDYEAAK-------------------AKDG-NCLDGDQPNKRPRTTITA 213
L + KL+C+ D E +DG DG + KRPRT +T+
Sbjct: 137 SL-KSGKLICQHDLEKDMYSSLHPIHSHHLYGDDDYLMEDGLRSRDGRRGPKRPRTILTS 195
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 273
Q K +++ SPKP R VRE L++DTGL +RVVQVWFQN+RAK K++ + + + S
Sbjct: 196 AQRRQFKASFDVSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKISRKSKSNQNSS 255
Query: 274 YFRSMKGGTSPKDELKIDLDSNFS-HSH 300
S KDE I L+S S H H
Sbjct: 256 --ADADKNHSDKDEKSIKLESPSSDHGH 281
>gi|432868110|ref|XP_004071416.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 398
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 120/223 (53%), Gaps = 36/223 (16%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V ER+WH C+KC C + L C+ R+ LL+CK D+ K F KC
Sbjct: 55 CAGCESPISDRFLLRVNERSWHETCVKCAVCLSTLTGTCYCRDRLLYCKLDYEKLFVRKC 114
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+ C I ++++ R VYHL CF+C C R+L GDEF L E +L+C+ DYE
Sbjct: 115 SACLQVIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEG-QLLCRMDYE---- 169
Query: 193 KDGNCLDGDQP-------------------------------NKRPRTTITAKQLETLKM 221
K+ L P +KRPRT +T +Q K
Sbjct: 170 KEREMLAAISPTPTESVKSEDEDGGGGSGSGKGGDESKEHKRSKRPRTILTTQQRRAFKA 229
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K++ +
Sbjct: 230 SFEVSAKPCRKVRETLAAETGLTVRVVQVWFQNQRAKMKKIAR 272
>gi|5738956|dbj|BAA83421.1| LIM-homeodomain (LHX) protein 6.1a [Mus musculus]
Length = 363
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N ++CK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKKAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TG RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGFSRRVIQVWFQNCRARHKK 276
>gi|18858905|ref|NP_571037.1| insulin gene enhancer protein isl-1 [Danio rerio]
gi|1708559|sp|P53405.1|ISL1_DANRE RecName: Full=Insulin gene enhancer protein isl-1; Short=Islet-1
gi|497898|dbj|BAA04670.1| insulin gene enhancer binding protein [Danio rerio]
gi|38173895|gb|AAH60892.1| Isl1 protein [Danio rerio]
Length = 349
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 122/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERATMGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|291410745|ref|XP_002721643.1| PREDICTED: ISL LIM homeobox 2 [Oryctolagus cuniculus]
Length = 359
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 123/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFGSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCLDGD------------QPNKRP------------RTTITAKQLET 218
A + L G QP RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDPGPGRQPTLRPHVHKQAEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|432872837|ref|XP_004072149.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 346
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 124/209 (59%), Gaps = 20/209 (9%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFG 129
+C CG I DR++LKV WH CL+C C A L + C+ +N ++CK D+F RFG
Sbjct: 67 QCANCGIEIHDRYLLKVNNLNWHLGCLECSVCRASLHQHSSCYVKNKEIYCKLDYFSRFG 126
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE- 188
TKCA C + + VRRA+ VYHL CFAC C RQL+TG+EF L+E R ++C+ Y+
Sbjct: 127 TKCAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGR-VLCRSHYDI 185
Query: 189 -------AAKAKDGNCLDG----DQ-----PNKRPRTTITAKQLETLKMAYNTSPKPARH 232
AA++ G L+G DQ P KR RT+ T++QL+ ++ + P
Sbjct: 186 MLDNLRRAAESGTGLTLEGALPSDQDCQPKPAKRARTSFTSEQLQVMQTQFAQDNNPDAQ 245
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 246 TLQKLAEMTGLSRRVIQVWFQNCRARHKK 274
>gi|1708565|sp|P53409.1|ISL3_ONCTS RecName: Full=Insulin gene enhancer protein ISL-3; Short=Islet-3
Length = 363
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE- 188
KCA C +G + +V RA+D VYH+ CF C +C+RQL GDEF L D +L+C+ D+
Sbjct: 87 IKCAKCNLGFSSSDLVMRARDNVYHIECFRCSVCSRQLLPGDEFSL-RDEELLCRADHSL 145
Query: 189 -----------------------------AAKAKDGNCL-DGDQPNKRPRTTITAKQLET 218
+A N + + R RT + KQL T
Sbjct: 146 LMERTSAGSPISPGHIHSNRSLHLAAEPVTVRAPHRNHVHKQSEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ YN +P+P +REQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYNANPRPDALMREQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|345806127|ref|XP_548475.3| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Canis lupus
familiaris]
Length = 363
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR +LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICASCGLEILDRDLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 241 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276
>gi|348539206|ref|XP_003457080.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Oreochromis niloticus]
Length = 357
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 121/223 (54%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + +G
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDESCTCFVRDGKTYCKRDYIRLYG 76
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D+
Sbjct: 77 IKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRADHDV 135
Query: 188 -EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQLET 218
E A G+ L QP RP RT + KQL T
Sbjct: 136 VERASLGPGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHT 195
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 196 LRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|291240697|ref|XP_002740254.1| PREDICTED: LIM class homeodomain transcription factor, Lhx6/8
subclass-like [Saccoglossus kowalevskii]
Length = 283
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 122/203 (60%), Gaps = 15/203 (7%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C GC I DR++LKV R+WH RCL+C C L + CF ++ ++CK D+ ++FGT
Sbjct: 22 CLGCTSPIQDRYLLKVGTRSWHVRCLRCCICQTGLGGQQSCFTKDDNIYCKMDYIRQFGT 81
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KC+ C I VR+A++ VYHL CFAC C RQL+TG+EF M++ K++CK Y
Sbjct: 82 KCSRCMRNIQSNDWVRKAKNHVYHLACFACDNCKRQLSTGEEF-AMQENKVLCKTHYLEL 140
Query: 188 -----EAAKAKDGNCLDG----DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
+ ++ K+G +G + KR RTT T +QL+ L+ +N P E+++
Sbjct: 141 LENSSDCSETKEGMLQNGHSRHNPRTKRVRTTFTEEQLQVLQANFNVDSNPDGQDLERIA 200
Query: 239 QDTGLDMRVVQVWFQNRRAKEKR 261
Q TGL RV QVWFQN RA++K+
Sbjct: 201 QITGLSKRVTQVWFQNSRARQKK 223
>gi|345806125|ref|XP_003435390.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Canis lupus
familiaris]
Length = 392
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR +LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICASCGLEILDRDLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 270 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|357605400|gb|EHJ64588.1| hypothetical protein KGM_21596 [Danaus plexippus]
Length = 406
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 117/202 (57%), Gaps = 14/202 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG+ I DRF+L+V WH CL+C C L CF R+ ++CK+D+ K FG
Sbjct: 138 CCACGEPIADRFLLEVGGGAWHTGCLRCCVCAVQLDRHPSCFLRDRQVYCKQDYAKSFGA 197
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KC+ C GI + VR+A++ VYHL CFAC C RQL+TG++F L EDR ++CKP Y
Sbjct: 198 KCSKCCRGISSSDWVRKAREQVYHLACFACDACGRQLSTGEQFALHEDR-VLCKPHYLET 256
Query: 188 --EAAKAKDGNCLDGDQPN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ + DG C D KR RTT T +QL+ L+ + P E+++Q
Sbjct: 257 LDGGSISSDGKCNGCDSEGYHKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQ 316
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 317 VTGLSKRVTQVWFQNSRARQKK 338
>gi|321477982|gb|EFX88940.1| hypothetical protein DAPPUDRAFT_4176 [Daphnia pulex]
Length = 199
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 111/198 (56%), Gaps = 10/198 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG+LI DRF+++V RTWH+ CL+C C L + CF R G ++C+ D+ + FG
Sbjct: 1 CAACGELITDRFLIQVSGRTWHSTCLRCSVCRTALDNQPSCFVRAGAIYCRADYTRTFGA 60
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
KCA C I VRRA++ VYHL CFAC C RQL+TG+EF L E R ++CK Y
Sbjct: 61 KCARCSRSISAADWVRRAREHVYHLACFACDACRRQLSTGEEFALHEGR-VLCKTHYLDG 119
Query: 191 KAKDGNCLDGDQP-------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
D P +KR RTT T +QL L+ + P E+++ TGL
Sbjct: 120 LDAGSTSSDETDPEGGGRSKSKRVRTTFTEEQLHVLQANFLLDSNPDGQDLERIANLTGL 179
Query: 244 DMRVVQVWFQNRRAKEKR 261
RV QVWFQN RA+ K+
Sbjct: 180 SKRVTQVWFQNMRARHKK 197
>gi|195456664|ref|XP_002075233.1| GK16904 [Drosophila willistoni]
gi|194171318|gb|EDW86219.1| GK16904 [Drosophila willistoni]
Length = 506
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 91/127 (71%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P+ C GC ILD+F+L VLER WHA C++C EC PL +KCF+R L+C+ DFF
Sbjct: 20 PVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+GTKC+GC GI P+ +VR+ +D V+HLNCF C +C +QL+TG++ Y+++D K +CK
Sbjct: 80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKD 139
Query: 186 DYEAAKA 192
DY +A
Sbjct: 140 DYLLGRA 146
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A+N +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+R+K+
Sbjct: 250 PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT 309
Query: 265 DAGRTRWSQYFRSMKG 280
GR + R M+G
Sbjct: 310 SMGRPPFFGGARKMRG 325
>gi|340721611|ref|XP_003399211.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus terrestris]
gi|350404711|ref|XP_003487194.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus impatiens]
Length = 334
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 122/216 (56%), Gaps = 19/216 (8%)
Query: 60 IMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGL 117
I P P S+ +CGGCG+ + +R +L V RTWH+RCL+C C PL ++ CF +
Sbjct: 33 IGPEMSP--SVMECGGCGERVRERTVLCVGGRTWHSRCLRCCACARPLHDQHSCFLKGMR 90
Query: 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
L+C+ D+ FG KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+
Sbjct: 91 LYCRHDYALTFGAKCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL- 149
Query: 178 DRKLVCKPDYEAAKAKDGNCLDGDQPN------------KRPRTTITAKQLETLKMAYNT 225
D +L+CK Y +GN D+ KR RTT T +QL L+ +
Sbjct: 150 DARLLCKAHY--LDVVEGNNTSSDEGGDSESGHKSGNKAKRVRTTFTEEQLSVLQANFQL 207
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P E+++ TGL RV QVWFQN RA++K+
Sbjct: 208 DSNPDGQDLERIAHVTGLSKRVTQVWFQNSRARQKK 243
>gi|300795417|ref|NP_001178166.1| insulin gene enhancer protein ISL-2 [Bos taurus]
Length = 359
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 123/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCL------------DGDQPNKRP------------RTTITAKQLET 218
A + L G QP+ RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDPGSGRQPSLRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++E L + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEHLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|328781528|ref|XP_001121397.2| PREDICTED: LIM/homeobox protein Awh [Apis mellifera]
Length = 352
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ + +R +L V RTWH+RCLKC C PL ++ CF R L+C+ D+ FG
Sbjct: 77 CGGCGESVRERTVLCVGGRTWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTFGA 136
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 137 KCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLDV 195
Query: 188 ----EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ ++D + G + + KR RTT T +QL L+ + P E+++ T
Sbjct: 196 VEGNNTSSSEDCDSEHGGKGSKTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 255
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 256 GLSKRVTQVWFQNSRARQKK 275
>gi|432861700|ref|XP_004069695.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oryzias
latipes]
Length = 358
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 34/227 (14%)
Query: 68 ASIPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
+ I C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 22 SGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDY 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ FG KCA C G + +V RA++ VYH+ CF C +C+R L GDEF L ED +L+C+
Sbjct: 82 ARLFGIKCAKCNTGFCSSDLVMRAREKVYHMECFRCSVCSRHLLPGDEFSLRED-ELLCR 140
Query: 185 PDYE-AAKAKDGNCLDGDQPNKRP-----------------------------RTTITAK 214
+++ +A G+ L D +KR RT + K
Sbjct: 141 ANHDLLERASAGSPLSPDNLHKRTLHISDPISVRHPSHHRNHVHKQSEKTTRVRTVLNEK 200
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 201 QLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 247
>gi|380013576|ref|XP_003690828.1| PREDICTED: LIM/homeobox protein Awh-like [Apis florea]
Length = 351
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ + +R +L V RTWH+RCLKC C PL ++ CF R L+C+ D+ FG
Sbjct: 76 CGGCGESVRERTVLCVGGRTWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTFGA 135
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 136 KCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLDV 194
Query: 188 ----EAAKAKDGNCLDGDQ--PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ ++D + G + KR RTT T +QL L+ + P E+++ T
Sbjct: 195 VEGNNTSSSEDCDSEHGGKGSKTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 254
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 255 GLSKRVTQVWFQNSRARQKK 274
>gi|328723694|ref|XP_001946328.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Acyrthosiphon pisum]
Length = 415
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 119/216 (55%), Gaps = 25/216 (11%)
Query: 62 PVY-----MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNG 116
P+Y P+ C C I DR+I++V R++H RCLKC C L CF N
Sbjct: 23 PIYGDDPSEPVGVSTVCAKCECTIADRYIMRVSGRSYHERCLKCTTCSLKLDRSCFVWNA 82
Query: 117 LLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM 176
L+C++D+ K C C I ++V RA + V+H CF CV+C +L TGD+ Y++
Sbjct: 83 KLYCRQDYDKCVYRSCGSCGDHIAAGELVMRAGECVFHEQCFVCVVCGIRLCTGDQ-YVI 141
Query: 177 EDRKLVCKPDYEAAKAKDGNCL---------------DGDQPNKRPRTTITAKQLETLKM 221
+ +L C+PDYE K+ N + DG + KRPRT +T +Q K
Sbjct: 142 KHSQLFCRPDYE----KEVNMMRDEINRNTGDWSYNHDGRRGPKRPRTILTTQQRRAFKA 197
Query: 222 AYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRA 257
++ SPKP R VRE L+ DTGL +R+VQVWFQN+RA
Sbjct: 198 SFELSPKPCRKVREGLAHDTGLSVRIVQVWFQNQRA 233
>gi|403304937|ref|XP_003943035.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 359
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 122/223 (54%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDPFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCL------------DGDQPNKRP------------RTTITAKQLET 218
A + L G QP RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDPGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|348555669|ref|XP_003463646.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Cavia
porcellus]
Length = 371
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYARLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D V+H+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVFHVECFRCAVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKDGNC---------------LDGDQPNKRP------------RTTITAKQLET 218
E A A + G QP RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPIPGARALHLPEPVPGQQPALRPHVHKQAEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|2435404|gb|AAB71337.1| arrowhead [Drosophila melanogaster]
Length = 214
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK Y
Sbjct: 65 FGAKCSKSCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCKAHY 123
Query: 188 ----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
E DGD KR RTT T +QL+ L+ + P E+++
Sbjct: 124 LETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV +VWFQN RA++K+
Sbjct: 184 VTGLSKRVTEVWFQNSRARQKK 205
>gi|307195464|gb|EFN77350.1| LIM/homeobox protein Awh [Harpegnathos saltator]
Length = 291
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG 129
+CGGCG+ + +R +L V RTWH+RCL+C C PL ++ CF + L+C+ D+ FG
Sbjct: 2 ECGGCGERVRERIVLCVGGRTWHSRCLRCCACARPLHDQHSCFLKGMRLYCRHDYALTFG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 62 AKCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLD 120
Query: 188 ----------EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
E ++ G+ G KR RTT T +QL L+ + P E++
Sbjct: 121 VVEGNNTSSDEGGDSESGH--KGGNKAKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERI 178
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFS 297
+ TGL RV QVWFQN RA++K+ G+ + +S T+ ++ ++ + +
Sbjct: 179 AHVTGLSKRVTQVWFQNSRARQKK-HLHTGKMKGPHVHQSPPNSTASPNDFGRHINLHLT 237
Query: 298 HS 299
+S
Sbjct: 238 YS 239
>gi|410922098|ref|XP_003974520.1| PREDICTED: insulin gene enhancer protein isl-1-like [Takifugu
rubripes]
Length = 331
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 121/223 (54%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + +G
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDESCTCFVRDGKTYCKRDYIRLYG 76
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L +D L C+ D+
Sbjct: 77 IKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDD-GLFCRADHDV 135
Query: 188 -EAAKAKDGNCLDG--------------------------DQPNK--RPRTTITAKQLET 218
E A G+ L QP K R RT + KQL T
Sbjct: 136 VERASLASGDPLSPLHPARPLQMAAEPVSARTPALRPHVHKQPEKTTRVRTVLNEKQLHT 195
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 196 LRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|403304939|ref|XP_003943036.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 360
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 123/224 (54%), Gaps = 36/224 (16%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDPFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKD----------------GNCLDGDQPNKRP------------RTTITAKQLE 217
E A A + G QP RP RT + KQL
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPADPGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLH 205
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 249
>gi|123981310|gb|ABM82484.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
Length = 349
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I DR+IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDRYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|350404762|ref|XP_003487212.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus impatiens]
Length = 331
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ + +R +L V RTWH+RCLKC C PL ++ CF R L+C+ D+ FG
Sbjct: 56 CGGCGESVRERTVLCVGGRTWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTFGA 115
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 116 KCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLDV 174
Query: 188 ----EAAKAKDGNCLDGDQ--PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ ++D + G + KR RTT T +QL L+ + P E+++ T
Sbjct: 175 VEGNNTSSSEDCDSEHGGKGSKTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 234
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 235 GLSKRVTQVWFQNSRARQKK 254
>gi|340721085|ref|XP_003398956.1| PREDICTED: LIM/homeobox protein Awh-like [Bombus terrestris]
Length = 329
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ + +R +L V RTWH+RCLKC C PL ++ CF R L+C+ D+ FG
Sbjct: 54 CGGCGESVRERTVLCVGGRTWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTFGA 113
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 114 KCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLDV 172
Query: 188 ----EAAKAKDGNCLDGDQ--PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ ++D + G + KR RTT T +QL L+ + P E+++ T
Sbjct: 173 VEGNNTSSSEDCDSEHGGKGSKTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 232
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 233 GLSKRVTQVWFQNSRARQKK 252
>gi|1708557|sp|P53408.1|ISL2A_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2A; Short=Islet-2A
Length = 358
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 124/227 (54%), Gaps = 34/227 (14%)
Query: 68 ASIPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
+ I C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 22 SGIAMCVGCGSQIHDQYILRVAPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ FG KCA C +G + +V RA+D VYH+ CF C +C+R L GDEF L D +L+C+
Sbjct: 82 VRLFGIKCANCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSL-RDEELLCR 140
Query: 185 PDY----EAAKAKD--------------GNCLDGDQP------------NKRPRTTITAK 214
D+ E A A + + QP R RT + K
Sbjct: 141 ADHGLLMEQASAGSPLSPGIIHSRSLHIADPVSVRQPPHRNHVHKQSEKTTRVRTVLNEK 200
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 201 QLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 247
>gi|379698940|ref|NP_001243941.1| arrowhead PA [Bombyx mori]
gi|346223348|dbj|BAK78925.1| arrowhead PA [Bombyx mori]
Length = 274
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 116/201 (57%), Gaps = 15/201 (7%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG+ I DRF+L+V WH CL+C C L CF R+ ++CK+D+ K FG
Sbjct: 8 CCACGEPIADRFLLEVGGAAWHTGCLRCCVCAVQLDRHPSCFLRDRQVYCKQDYAKSFGA 67
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
KC+ C GI + VR+A++ VYHL CFAC C RQL+TG++F L EDR ++CKP Y
Sbjct: 68 KCSKCCRGISSSDWVRKAREQVYHLACFACDACGRQLSTGEQFALHEDR-VLCKPHY--L 124
Query: 191 KAKDGNCLDGD----------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
+ DG + D KR RTT T +QL+ L+ + P E+++Q
Sbjct: 125 ETLDGGSISSDDGCDSEGYHKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQV 184
Query: 241 TGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 185 TGLSKRVTQVWFQNSRARQKK 205
>gi|348500124|ref|XP_003437623.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oreochromis
niloticus]
Length = 360
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 122/224 (54%), Gaps = 36/224 (16%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C +G + +V RA+D VYH+ CF C +C+RQL GDEF L E+ +L+C+ D+
Sbjct: 87 IKCAKCNLGFSSSDLVMRARDNVYHIECFRCSVCSRQLLPGDEFSLREE-ELLCRADHSL 145
Query: 188 -----EAAKAKDGNCLDGDQP-------------------------NKRPRTTITAKQLE 217
A + ++P R RT + KQL
Sbjct: 146 LLERSSAGSPVSPGHIHSNRPLHLAADPVTVRQAPHRNHVHKQSEKTTRVRTVLNEKQLH 205
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 TLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 249
>gi|308097158|gb|ADO14133.1| ISL1 transcription factor [Notophthalmus viridescens]
Length = 349
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 122/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF+CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFSCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 YEAAK-----AKD--------------GNCLDGDQPNKRP------------RTTITAKQ 215
++ + A D + QP RP RT + KQ
Sbjct: 133 HDVVERASLGAADPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|383857875|ref|XP_003704429.1| PREDICTED: LIM/homeobox protein Awh-like [Megachile rotundata]
Length = 358
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG+ + +R +L V RTWH+RCLKC C PL ++ CF R L+C+ D+ FG
Sbjct: 83 CGGCGESVRERTVLCVGGRTWHSRCLKCCACARPLHDQHSCFLRGMRLYCRHDYALTFGA 142
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KCA C + VRRA++ VYHL CFAC C+RQL+TG++F L+ D +L+CK Y
Sbjct: 143 KCAKCGRSVGAGDWVRRARERVYHLACFACDACSRQLSTGEQFALL-DARLLCKAHYLDV 201
Query: 188 ----EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ ++D + G + + KR RTT T +QL L+ + P E+++ T
Sbjct: 202 VEGNNTSSSEDCDSEHGGKGSKTKRVRTTFTEEQLSVLQANFQLDSNPDGQDLERIAHVT 261
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV QVWFQN RA++K+
Sbjct: 262 GLSKRVTQVWFQNSRARQKK 281
>gi|47215186|emb|CAG01452.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 123/216 (56%), Gaps = 21/216 (9%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKED 123
P+ C C + I+D+++LKV + WH RCL C C L+ C+ + +FCK D
Sbjct: 5 PLLGRAVCASCSEEIVDKYLLKVNDLCWHVRCLSCSVCHTSLSSHTSCYIKEKEVFCKLD 64
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+F+R+GT CA C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C
Sbjct: 65 YFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLC 123
Query: 184 KPDYEAA------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNT 225
+ Y+ + GN ++ + +P+KR RT+ TA QL+ ++ +
Sbjct: 124 RVHYDCMLDNLKRAVEKGNSVNMEGAVPTEQEINQPKPSKRARTSFTADQLQVMQAQFAQ 183
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 184 DNNPDAQTLQKLAEQTGLSRRVIQVWFQNCRARHKK 219
>gi|154146254|ref|NP_081673.2| insulin gene enhancer protein ISL-2 [Mus musculus]
gi|408360153|sp|Q9CXV0.2|ISL2_MOUSE RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|148693907|gb|EDL25854.1| insulin related protein 2 (islet 2) [Mus musculus]
gi|183396835|gb|AAI65972.1| Insulin related protein 2 (islet 2) [synthetic construct]
Length = 359
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKD---------------GNCLDGDQPN------------KRPRTTITAKQLET 218
E A A + G QP+ R RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPSLRTHVHKQAEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|158287501|ref|XP_309513.3| AGAP011134-PA [Anopheles gambiae str. PEST]
gi|157019681|gb|EAA05265.3| AGAP011134-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 89/120 (74%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILD+F+L VLER WHA C++C EC PLA+KCF+R L+C+ DFF+R+GTKC
Sbjct: 27 CAGCNKPILDKFLLNVLERGWHATCVRCCECHQPLADKCFSRESKLYCRNDFFRRYGTKC 86
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
+GC GI P+ +VR+ +D V+HLNCF C +C +Q++TG++ Y+++D K +CK DY K
Sbjct: 87 SGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQISTGEQLYVLDDNKFICKDDYILGKG 146
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 69/94 (73%), Gaps = 3/94 (3%)
Query: 190 AKAKDGNCLDGDQPNKR-PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVV 248
++A++ + DG +R PRTTI AKQLE LK A++ +PKP RH+REQL+++TGL MRV+
Sbjct: 229 SQAENKSPDDGAGSKRRGPRTTIKAKQLEVLKNAFSQTPKPTRHIREQLAKETGLPMRVI 288
Query: 249 QVWFQNRRAKEKRLKK--DAGRTRWSQYFRSMKG 280
QVWFQN+R+KE+RLK+ GR + R M+G
Sbjct: 289 QVWFQNKRSKERRLKQLTSMGRGPFFGGARKMRG 322
>gi|126272190|ref|XP_001362509.1| PREDICTED: insulin gene enhancer protein ISL-2 [Monodelphis
domestica]
Length = 359
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 125/226 (55%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG I D++ILKV + WHA CLKC EC L E C F RNG +CK D+ +
Sbjct: 24 IAMCVGCGSQIHDQYILKVSPDLEWHAACLKCAECSQYLDETCTCFVRNGKTYCKRDYIR 83
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FG KCA C++G + +V RA++ VYH+ CF C +C+RQL GDEF L D +L+C+ D
Sbjct: 84 LFGIKCAKCKVGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFSL-RDHELLCRAD 142
Query: 187 Y---------EAAKAKD----------GNCLDGDQPN------------KRPRTTITAKQ 215
+ E+ ++ G QP+ R RT + KQ
Sbjct: 143 HSLLLDRASGESPRSPGHLPSSRGLHLSEPGSGRQPSLRAHVHKQAEKTTRVRTVLNEKQ 202
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 203 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|443701941|gb|ELU00131.1| hypothetical protein CAPTEDRAFT_168913 [Capitella teleta]
Length = 481
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 95/129 (73%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I++RF+L VL+R WHA+C+ C +C APL +KCF+R+G L+C++DF++R+GTKC
Sbjct: 6 CAGCDRPIIERFLLTVLDRAWHAQCVLCVDCQAPLTDKCFSRDGRLYCRQDFYRRYGTKC 65
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC GI P +VRRA++ V+HL CF C++C +QL+TG+E Y++++ K +CK DY K
Sbjct: 66 GGCAEGISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEELYVLDENKFICKSDYLHTKF 125
Query: 193 KDGNCLDGD 201
+ + D D
Sbjct: 126 QGSDDEDND 134
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 192 AKDGNCLDGDQPNKR-PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
+DG G KR PRTTI AKQLE LK A+ +PKP RH+REQL+++TGL MRV+QV
Sbjct: 251 TEDGEATGGKGSKKRGPRTTIKAKQLEVLKSAFAATPKPTRHIREQLAKETGLPMRVIQV 310
Query: 251 WFQNRRAKEKRLKKDAGRTRWSQYFR 276
WFQN+R+KE+R+K+ + Q+FR
Sbjct: 311 WFQNKRSKERRMKQLSALGARRQFFR 336
>gi|12851555|dbj|BAB29088.1| unnamed protein product [Mus musculus]
Length = 359
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKD---------------GNCLDGDQPN------------KRPRTTITAKQLET 218
E A A + G QP+ R RT + KQL T
Sbjct: 146 LLERAAAGSPRTPGPLPGARGLHLPDAGSGRQPSLRTHVDKQAEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|281342386|gb|EFB17970.1| hypothetical protein PANDA_008333 [Ailuropoda melanoleuca]
Length = 340
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 5 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 64
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 65 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 123
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 124 HDVVERASLGTGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 183
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 184 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 229
>gi|345497659|ref|XP_001601152.2| PREDICTED: LIM/homeobox protein Lhx5-like [Nasonia vitripennis]
Length = 475
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 88/119 (73%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I+D+F+ VL+R WHA C++C +C PL EKCF+R LFC+ DFFKR+GTKC
Sbjct: 5 CAGCDKPIMDKFLFNVLDRAWHADCVRCCDCRNPLQEKCFSREAKLFCRNDFFKRYGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
GC GI P+ +VR+A+D V+HLNCF C++C +Q++TG+E Y+++D VCK DY + K
Sbjct: 65 GGCSQGINPSDLVRKARDKVFHLNCFTCLVCRKQMSTGEELYVLDDNTFVCKEDYLSGK 123
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A++ +PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+RLK+
Sbjct: 244 PRTTIKAKQLEILKTAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLT 303
Query: 265 DAGRTRWSQYFRSMKG 280
GR+ + R M+G
Sbjct: 304 SMGRSPFFGGSRKMRG 319
>gi|157134682|ref|XP_001663345.1| arrowhead [Aedes aegypti]
gi|108870378|gb|EAT34603.1| AAEL013168-PA, partial [Aedes aegypti]
Length = 306
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 11/202 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKR 127
+ C CG+ I D+++L V +WH+ CL+C C PL + CF R+ ++CK D+ K
Sbjct: 5 LRSCTACGEPISDKYLLDVGGCSWHSACLRCCICHNPLDHQPSCFLRDRQIYCKNDYTKT 64
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KCA C I + VRRA++L +HL CFAC C RQL+TG++F L++D K++CK Y
Sbjct: 65 FGAKCARCCRSISASDWVRRARELTFHLACFACDSCGRQLSTGEQFALVDD-KVLCKTHY 123
Query: 188 E-----AAKAKDGNCLDGDQPN---KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ DG DG Q + KR RTT T +QL+ L+ +N P E+++
Sbjct: 124 SEMFDCGTSSDDGCEADGFQKSNKTKRVRTTFTEEQLQILQANFNIDSNPDGQDLERIAS 183
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 184 VTGLSKRVTQVWFQNSRARQKK 205
>gi|431908581|gb|ELK12174.1| Insulin protein enhancer protein ISL-1 [Pteropus alecto]
Length = 383
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 48 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 107
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 108 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 166
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 167 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 226
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 227 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 272
>gi|156364672|ref|XP_001626470.1| predicted protein [Nematostella vectensis]
gi|156213347|gb|EDO34370.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 29/215 (13%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG 129
+C GC I+DR+++KV R WH +CLKC C L + C+ ++G ++CK D+ ++FG
Sbjct: 27 RCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREATCYTKDGKIYCKADYARQFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK----- 184
TKCA C I VRRA++ VYHL CFAC C RQL+TG+EF L +D ++CK
Sbjct: 87 TKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFAL-KDGHVLCKLHYLE 145
Query: 185 --------PDYEAAKAKDGNCLDG-DQPN---------KRPRTTITAKQLETLKMAYNTS 226
DY+ + D +DG D PN KR RTT T QL+ L+ +N
Sbjct: 146 ALDTSPAERDYQEVFSPD---VDGDDSPNSLKSGRHKAKRVRTTFTEDQLQILQANFNID 202
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P E+++Q TGL RV QVWFQN RA++K+
Sbjct: 203 SNPDGQDLERIAQLTGLSKRVTQVWFQNSRARQKK 237
>gi|149691761|ref|XP_001490268.1| PREDICTED: insulin gene enhancer protein ISL-2 [Equus caballus]
Length = 359
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 123/223 (55%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCLDGD------------QPNKRP------------RTTITAKQLET 218
A + L G Q + RP RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDPGAGRQASLRPHVHKQTEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|70570020|dbj|BAE06522.1| transcription factor protein [Ciona intestinalis]
Length = 402
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 120/236 (50%), Gaps = 45/236 (19%)
Query: 70 IPKCGGCGDLILDRFILKVLER-TWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
IP C GCG I D++IL+V WHA CLKC +CG L E C F R+G +CK D+ +
Sbjct: 37 IPLCVGCGSPIHDQYILRVAPNLEWHAGCLKCADCGQYLDETCTCFVRDGKTYCKRDYTR 96
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C + V RA+D +YH+ CF CV C+RQL GDEF L +D L CK D
Sbjct: 97 LFGTKCNKCGLCFSKNDFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDD-GLFCKAD 155
Query: 187 YEAAKAKDGNCLDG-----------------------------------------DQPNK 205
+E A + D DG D
Sbjct: 156 HEVATSGDMMVHDGHMIPGIPQTPNPQGVISPQMGGERVISHRSGGHSGGQRRSKDAKTT 215
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
R RT + KQL TL+ Y + +P ++EQL++ TGL RV++VWFQN+R K+K+
Sbjct: 216 RVRTVLNEKQLHTLRTCYAANCRPDALMKEQLTEMTGLSSRVIRVWFQNKRCKDKK 271
>gi|355749907|gb|EHH54245.1| Insulin gene enhancer protein ISL-1 [Macaca fascicularis]
Length = 349
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 123/226 (54%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 YEAAK-----AKD--------------GNCLDGD----------QPNK--RPRTTITAKQ 215
++ + A D G L G QP K R RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAGTPLPGSXXXLRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|324511084|gb|ADY44626.1| LIM/homeobox protein Awh [Ascaris suum]
Length = 384
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 111/193 (57%), Gaps = 5/193 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C C + ILDR +L V R WH CL+C +C L + CF + +++CK + ++FGT
Sbjct: 119 CSSCTEYILDRILLNVNSRFWHTECLRCSQCSVHLDQYPSCFIKEDIIYCKPCYNRQFGT 178
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
KC+ C I PT VRRA+ VYHL CFAC C RQL+TG+EF L +D +L+CK Y
Sbjct: 179 KCSSCRRLIQPTDWVRRARSFVYHLACFACDQCKRQLSTGEEFAL-QDCRLLCKQHY--V 235
Query: 191 KAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
+ +G KR RTT +QL L+ + P E+++ TGL RV QV
Sbjct: 236 ELVEGETGQQKAKTKRVRTTFAEEQLAVLQTHFQIDSNPDGADLERIATMTGLSKRVTQV 295
Query: 251 WFQNRRAKEKRLK 263
WFQN RA++K+ +
Sbjct: 296 WFQNSRARQKKYQ 308
>gi|301768533|ref|XP_002919684.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Ailuropoda
melanoleuca]
Length = 349
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGTGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|432853477|ref|XP_004067726.1| PREDICTED: LIM/homeobox protein Lhx8 [Oryzias latipes]
Length = 338
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 24/230 (10%)
Query: 55 VDYEGIMPVYM---PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE-- 109
+D + P M P+ C C + I+D+++LKV + WH RCL C C L
Sbjct: 34 LDEDAASPRAMASAPLHCRSVCANCNEEIVDKYLLKVNDLCWHVRCLSCSVCQTSLGSHA 93
Query: 110 KCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNT 169
C+ + +FCK D+F+R+GT CA C I T VRRA+ VYHL CFAC C RQL+T
Sbjct: 94 SCYIKEKEIFCKLDYFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFSCKRQLST 153
Query: 170 GDEFYLMEDRKLVCKPDYE--------AAKAKDGNCLDG----------DQPNKRPRTTI 211
G+EF L+E K++C+ Y+ A + G ++G +P+KR RT+
Sbjct: 154 GEEFALVEG-KVLCRIHYDCMLDNLKRAVEKGTGVNMEGAVPTEQEINQPKPSKRARTSF 212
Query: 212 TAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TA QL+ ++ + P ++L+++TGL RV+QVWFQN RA+ K+
Sbjct: 213 TADQLQVMQAQFAQDNNPDAQTLQKLAEETGLSRRVIQVWFQNCRARHKK 262
>gi|391339813|ref|XP_003744241.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like
[Metaseiulus occidentalis]
Length = 707
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 11/196 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
CGGCG LIL+R L+V +WH CL+C C L + CF R+ ++CK+D+ ++FG
Sbjct: 455 CGGCGQLILERVQLQVDNCSWHVDCLRCCVCDCLLEKDSTCFFRDNNVYCKQDYARQFGV 514
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
+C+ C GI + VRRA+D VYHL CFAC C RQL+TG+EF L D +++CK +
Sbjct: 515 RCSKCTRGIQSSDWVRRARDQVYHLACFACEECKRQLSTGEEFAL-HDGRVLCKIHFCEL 573
Query: 188 --EAAKAKDGNCLDGDQP---NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+++ D N P KR RTT T +QL+ L+ +N P E+++Q TG
Sbjct: 574 IDPGSQSTDDNADQDHNPRAKTKRVRTTFTEEQLQVLQANFNLDSNPDGQDLERIAQITG 633
Query: 243 LDMRVVQVWFQNRRAK 258
L RV QVWFQN RA+
Sbjct: 634 LSKRVTQVWFQNSRAR 649
>gi|533419|gb|AAA81946.1| ISL-1 [Homo sapiens]
Length = 346
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 11 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 70
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 71 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 129
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 130 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 189
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 190 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 235
>gi|18858909|ref|NP_571039.1| insulin gene enhancer protein isl-2b [Danio rerio]
gi|1708564|sp|P53407.1|ISL2B_DANRE RecName: Full=Insulin gene enhancer protein isl-2b; Short=Islet-2B;
AltName: Full=Insulin gene enhancer protein isl-3;
Short=Islet-3
gi|1037168|dbj|BAA07485.1| zfIsl-3 [Danio rerio]
gi|55962547|emb|CAI11499.1| islet 3 [Danio rerio]
gi|63100507|gb|AAH95011.1| Islet2b [Danio rerio]
Length = 358
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 122/223 (54%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCVECNQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
KCA C +G + +V RA+D VYH+ CF C +C+RQL GDEF + D +L+C+ D+
Sbjct: 87 IKCAKCTLGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSV-RDEELLCRADHGL 145
Query: 190 A--KAKDGNCLDG-----------------------------DQPNKRPRTTITAKQLET 218
A + G+ L + R RT + KQL T
Sbjct: 146 ALERGPGGSPLSPGNIHTRGLHMAADPVSVRQTPHRNHVHKQSEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|395510266|ref|XP_003759400.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2
[Sarcophilus harrisii]
Length = 354
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|183985542|gb|AAI66037.1| isl1 protein [Xenopus (Silurana) tropicalis]
Length = 335
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 YEAAK-----AKD--------------GNCLDGDQPNKRP------------RTTITAKQ 215
++ + A D + QP RP RT + KQ
Sbjct: 133 HDVVERASLGASDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|94400881|ref|NP_059035.3| insulin gene enhancer protein ISL-1 [Rattus norvegicus]
gi|115387114|ref|NP_002193.2| insulin gene enhancer protein ISL-1 [Homo sapiens]
gi|149642655|ref|NP_001092600.1| insulin gene enhancer protein ISL-1 [Bos taurus]
gi|162287065|ref|NP_067434.3| insulin gene enhancer protein ISL-1 [Mus musculus]
gi|291395329|ref|XP_002714072.1| PREDICTED: islet-1 [Oryctolagus cuniculus]
gi|311273676|ref|XP_003133982.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Sus scrofa]
gi|332254884|ref|XP_003276562.1| PREDICTED: insulin gene enhancer protein ISL-1 [Nomascus
leucogenys]
gi|332821395|ref|XP_001150633.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2 [Pan
troglodytes]
gi|344272509|ref|XP_003408074.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Loxodonta
africana]
gi|345799577|ref|XP_853721.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1 [Canis
lupus familiaris]
gi|348568904|ref|XP_003470238.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cavia
porcellus]
gi|354472426|ref|XP_003498440.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cricetulus
griseus]
gi|395818859|ref|XP_003782831.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Otolemur
garnettii]
gi|397514229|ref|XP_003827396.1| PREDICTED: insulin gene enhancer protein ISL-1 [Pan paniscus]
gi|402871509|ref|XP_003899703.1| PREDICTED: insulin gene enhancer protein ISL-1 [Papio anubis]
gi|403267625|ref|XP_003925922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Saimiri boliviensis
boliviensis]
gi|410949527|ref|XP_003981473.1| PREDICTED: insulin gene enhancer protein ISL-1 [Felis catus]
gi|47606422|sp|P61374.1|ISL1_RAT RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606423|sp|P61371.1|ISL1_HUMAN RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606424|sp|P61372.1|ISL1_MOUSE RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606425|sp|P61373.1|ISL1_MESAU RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|2137056|pir||I67418 transcription factor isl-1 - hamster
gi|4261764|gb|AAD14064.1|S70721_1 homeobox [Homo sapiens]
gi|545787|gb|AAB30128.1| homeobox [Rattus sp.]
gi|4469284|emb|CAB38446.1| Lim-homeodomain protein Islet1 [Mus musculus]
gi|22658390|gb|AAH31213.1| ISL LIM homeobox 1 [Homo sapiens]
gi|30065750|gb|AAP20776.1| Isl-1 [Cricetulus sp.]
gi|119575256|gb|EAW54861.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [Homo
sapiens]
gi|123996141|gb|ABM85672.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
gi|124298178|gb|AAI32264.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|124375804|gb|AAI32610.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|148686421|gb|EDL18368.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_b [Mus
musculus]
gi|148877422|gb|AAI46164.1| ISL1 protein [Bos taurus]
gi|149059388|gb|EDM10395.1| ISL1 transcription factor, LIM/homeodomain 1 [Rattus norvegicus]
gi|157928248|gb|ABW03420.1| ISL LIM homeobox 1 [synthetic construct]
gi|261861196|dbj|BAI47120.1| ISL LIM homeobox 1 [synthetic construct]
gi|296475787|tpg|DAA17902.1| TPA: islet-1 [Bos taurus]
gi|351712707|gb|EHB15626.1| Insulin gene enhancer protein ISL-1 [Heterocephalus glaber]
gi|355691298|gb|EHH26483.1| Insulin gene enhancer protein ISL-1 [Macaca mulatta]
gi|226841|prf||1608207A insulin gene enhancer binding protein Isl-1
Length = 349
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|74096249|ref|NP_001027767.1| LIM homeodomain protein [Ciona intestinalis]
gi|3150146|emb|CAA06919.1| LIM homeodomain protein [Ciona intestinalis]
Length = 381
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 120/236 (50%), Gaps = 45/236 (19%)
Query: 70 IPKCGGCGDLILDRFILKVLER-TWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
IP C GCG I D++IL+V WHA CLKC +CG L E C F R+G +CK D+ +
Sbjct: 16 IPLCVGCGSPIHDQYILRVAPNLEWHAGCLKCADCGQYLDETCTCFVRDGKTYCKRDYTR 75
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C + V RA+D +YH+ CF CV C+RQL GDEF L +D L CK D
Sbjct: 76 LFGTKCNKCGLCFSKNDFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDD-GLFCKAD 134
Query: 187 YEAAKAKDGNCLDG-----------------------------------------DQPNK 205
+E A + D DG D
Sbjct: 135 HEVATSGDMMVHDGHMIPGIPQTPNPQGVISPQMGGERVISHRSGGHSGGQRRSKDAKTT 194
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
R RT + KQL TL+ Y + +P ++EQL++ TGL RV++VWFQN+R K+K+
Sbjct: 195 RVRTVLNEKQLHTLRTCYAANCRPDALMKEQLTEMTGLSSRVIRVWFQNKRCKDKK 250
>gi|440908077|gb|ELR58138.1| Insulin enhancer protein ISL-1, partial [Bos grunniens mutus]
Length = 359
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 24 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 83
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 84 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 142
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 143 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 202
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 203 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|149041730|gb|EDL95571.1| insulin related protein 2 (islet 2) [Rattus norvegicus]
Length = 359
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 35/223 (15%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 -----EAAKAKDGNCLDG------------------------DQPNKRPRTTITAKQLET 218
A + L G + R RT + KQL T
Sbjct: 146 LLERAAAGSPRSPGPLPGARGLHLPDAGSGRQSSLRTHVHKQAEKTTRVRTVLNEKQLHT 205
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|126315044|ref|XP_001365199.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Monodelphis
domestica]
gi|395510264|ref|XP_003759399.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1
[Sarcophilus harrisii]
Length = 349
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|426246540|ref|XP_004017051.1| PREDICTED: insulin gene enhancer protein ISL-1 [Ovis aries]
Length = 349
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLNPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|327262855|ref|XP_003216239.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Anolis
carolinensis]
Length = 349
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGPGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|28569978|dbj|BAC57891.1| transcription factor islet-1 isoform beta [Mus musculus]
gi|148686420|gb|EDL18367.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_a [Mus
musculus]
Length = 326
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|345304657|ref|XP_001508080.2| PREDICTED: insulin gene enhancer protein ISL-1-like
[Ornithorhynchus anatinus]
Length = 382
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 47 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 106
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 107 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 165
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 166 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 225
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 226 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 271
>gi|18858907|ref|NP_571045.1| insulin gene enhancer protein isl-2a [Danio rerio]
gi|1708561|sp|P53406.1|ISL2A_DANRE RecName: Full=Insulin gene enhancer protein isl-2a; Short=Islet-2A;
AltName: Full=Insulin gene enhancer protein isl-2;
Short=Islet-2
gi|871001|emb|CAA61283.1| Islet-2 protein [Danio rerio]
gi|1037166|dbj|BAA07484.1| zfIsl-2 [Danio rerio]
gi|190336908|gb|AAI62631.1| Islet2a [Danio rerio]
gi|190339440|gb|AAI62833.1| Islet2a [Danio rerio]
Length = 359
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 126/228 (55%), Gaps = 35/228 (15%)
Query: 68 ASIPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
+ I C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 22 SGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ FG KCA C +G + +V RA+D VYH+ CF C +C+R L GDEF L D +L+C+
Sbjct: 82 VRLFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSL-RDEELLCR 140
Query: 185 PDY----EAAKA----KDGNC-------LDGDQPNKRP----------------RTTITA 213
D+ E A A GN + P ++P RT +
Sbjct: 141 ADHGLLMERASAGSPISPGNIHSSRPLHIPEPVPVRQPPHRNHVHKQSEKTTRVRTVLNE 200
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
KQL TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 201 KQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
>gi|158254920|dbj|BAF83431.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQCLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|6980082|gb|AAF34717.1|AF226616_1 LIM-homeodomain transcription factor islet [Branchiostoma floridae]
Length = 419
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 119/226 (52%), Gaps = 39/226 (17%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC +C L E C F R G +CK + + FG
Sbjct: 15 CVGCGSHIHDQYILRVAPDLEWHAACLKCSDCNQYLDETCTCFVREGKTYCKRCYVRLFG 74
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C +G V RA++ +YH++CF CV C+RQL GDEF L ED L CK D+E
Sbjct: 75 TKCAKCSLGFTKNDFVMRAKNKIYHIDCFRCVACSRQLIPGDEFALRED-GLFCKADHEV 133
Query: 190 AKAKDGNC----------------------------------LDGDQPNKRPRTTITAKQ 215
+ N DG +P R RT + KQ
Sbjct: 134 LERASNNVDSNGRASLGSTDLEMATRPESHGRSDQRRPQVHKQDGHKPT-RVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|170034020|ref|XP_001844873.1| arrowhead [Culex quinquefasciatus]
gi|167875281|gb|EDS38664.1| arrowhead [Culex quinquefasciatus]
Length = 304
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 11/199 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG+ I D+++L V +WH+ CL+C C PL ++ CF R+ ++CK D+ FG
Sbjct: 10 CTACGEPISDQYLLDVGGCSWHSACLRCCICHTPLDQQPSCFLRDRQIYCKADYASTFGA 69
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ +++HL CFAC C RQL+TG++F L +D K++CK Y
Sbjct: 70 KCARCSRSISASDWVRRARKMIFHLACFACDSCGRQLSTGEQFALADD-KVLCKKHYSEF 128
Query: 189 ---AAKAKDGNCLDGDQ---PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ DG DG Q +KR RTT T +QL+ L+ +N P E+++ TG
Sbjct: 129 FDCGTSSDDGCEADGLQKSNKSKRVRTTFTEEQLQILQANFNIDSNPDGQDLERIASVTG 188
Query: 243 LDMRVVQVWFQNRRAKEKR 261
L RV QVWFQN RA++K+
Sbjct: 189 LSKRVTQVWFQNSRARQKK 207
>gi|224090443|ref|XP_002197098.1| PREDICTED: insulin gene enhancer protein ISL-1 [Taeniopygia
guttata]
Length = 349
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGGGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|45382271|ref|NP_990745.1| insulin gene enhancer protein ISL-1 [Gallus gallus]
gi|1708560|sp|P50211.1|ISL1_CHICK RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|531179|gb|AAA62171.1| amino acid feature: LIM1, bp 331 .. 483; amino acid feature: LIM2,
bp 517 .. 669; amino acid feature: homeodomain, bp 820
.. 999 [Gallus gallus]
Length = 349
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|260829945|ref|XP_002609922.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
gi|229295284|gb|EEN65932.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
Length = 430
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 119/226 (52%), Gaps = 39/226 (17%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC +C L E C F R G +CK + + FG
Sbjct: 26 CVGCGSHIHDQYILRVAPDLEWHAACLKCSDCNQYLDETCTCFVREGKTYCKRCYVRLFG 85
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C +G V RA++ +YH++CF CV C+RQL GDEF L ED L CK D+E
Sbjct: 86 TKCAKCSLGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALRED-GLFCKADHEV 144
Query: 190 AKAKDGNC----------------------------------LDGDQPNKRPRTTITAKQ 215
+ N DG +P R RT + KQ
Sbjct: 145 LERASNNVDSNGRASLGSTDLEMATRPESHGRSDQRRPQVHKQDGHKPT-RVRTVLNEKQ 203
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 204 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 249
>gi|57613|emb|CAA37349.1| insulin gene enhancer binding protein [Rattus rattus]
Length = 313
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 11 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 70
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 71 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 129
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 130 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 189
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 190 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 235
>gi|348505012|ref|XP_003440055.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 338
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 21/216 (9%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKED 123
P+ C C + I+D+++LKV + WH RCL C C L C+ + +FCK D
Sbjct: 48 PLLGRTVCASCNEEIVDKYLLKVNDLCWHVRCLSCSVCQTSLGSHTSCYIKEKEVFCKLD 107
Query: 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+F+R+GT CA C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E K++C
Sbjct: 108 YFRRYGTWCACCGRNIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEG-KVLC 166
Query: 184 KPDYEAA------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNT 225
+ Y+ + GN ++ + +P+KR RT+ TA QL+ ++ +
Sbjct: 167 RVHYDCMLDNLKRAVEKGNSVNMEGAVPTEQEINQPKPSKRARTSFTADQLQVMQAQFAQ 226
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 227 DNNPDAQTLQKLAEQTGLSRRVIQVWFQNCRARHKK 262
>gi|348531406|ref|XP_003453200.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 386
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 21/211 (9%)
Query: 71 PKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRF 128
P C CG I+DR++LKV WH RCL C C L C+ R+ +FCK D+F+R+
Sbjct: 104 PVCTSCGLEIVDRYLLKVNNLCWHVRCLSCSVCKTSLGRHVSCYIRDKEVFCKLDYFRRY 163
Query: 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
GT+CA C I + VRRA+ +HL CF+C C RQL+TG+E L+E+R + C+P Y+
Sbjct: 164 GTRCARCGRNIHSSDWVRRARGSTFHLACFSCTSCKRQLSTGEECGLLENR-VFCRPHYD 222
Query: 189 AA-----KAKDGN-CLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPA 230
+AK+ + C++G +P KR RT+ T QL+ ++ + P
Sbjct: 223 IMIENLKRAKENSECMNGQGSDLNYSKLILPKPAKRARTSFTVDQLQVMQTQFAKDNNPD 282
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA++K+
Sbjct: 283 AQTLQKLADRTGLSRRVIQVWFQNCRARQKK 313
>gi|50253600|gb|AAT72002.1| isl1, partial [Xenopus (Silurana) tropicalis]
Length = 268
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 YEAAK-----AKD--------------GNCLDGDQPNKRP------------RTTITAKQ 215
++ + A D + QP RP RT + KQ
Sbjct: 133 HDVVERASLGASDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|344278994|ref|XP_003411276.1| PREDICTED: LIM/homeobox protein Lhx8 [Loxodonta africana]
Length = 346
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|261490776|ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]
gi|238683613|gb|ACR54090.1| LIM homeobox 8 [Sus scrofa]
Length = 295
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 14 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 73
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 74 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 132
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 133 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 192
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 193 TLQKLAERTGLSRRVIQVWFQNCRARHKK 221
>gi|358411510|ref|XP_589896.5| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
Length = 443
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 172 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 231
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 232 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 290
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 291 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 350
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 351 TLQKLAERTGLSRRVIQVWFQNCRARHKK 379
>gi|157128769|ref|XP_001661512.1| arrowhead [Aedes aegypti]
gi|108872464|gb|EAT36689.1| AAEL011247-PA [Aedes aegypti]
Length = 271
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 10/198 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG+ I D+++ V +WH CL+C C L + C+ R+ ++C+ D+ K FG
Sbjct: 22 CTACGEPIADKYLFDVDGCSWHGSCLRCSVCLTLLERQPSCYFRDRQVYCRSDYAKTFGA 81
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KC+ C I P+ VR+A+DLV+HL CF+C C RQL+TG++F L++D K++CK Y
Sbjct: 82 KCSKCSRTIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDD-KVMCKIHYMDN 140
Query: 188 --EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
++ + DG DG N KR RTT T +QL L+ + P E+++Q TGL
Sbjct: 141 ADDSNSSDDGCSTDGFNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLERIAQLTGL 200
Query: 244 DMRVVQVWFQNRRAKEKR 261
RV QVWFQN RA++K+
Sbjct: 201 SKRVTQVWFQNSRARQKK 218
>gi|410921390|ref|XP_003974166.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 354
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 115/226 (50%), Gaps = 34/226 (15%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V + WH C++C CG L + CF R L+CK+D+ + F C
Sbjct: 7 CAGCQRPIRDRFLLRVTDCLWHEACVRCAACGDALKKSCFVRGRKLYCKQDYAELFAVHC 66
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
GC I T++V RA V+HL+CF C +C+ +L TGD E + L + DY A
Sbjct: 67 GGCAEAISHTELVMRAGAAVFHLHCFTCSVCSCRLQTGDRCVFREGQLLCAREDYHRCLA 126
Query: 193 K-----DGNCLDG-----------------------------DQPNKRPRTTITAKQLET 218
G DG + KRPRT +T +Q T
Sbjct: 127 SPTSSYTGTSCDGDDEDEEEEKEEEEESAAAADRTARTAEQDSKRPKRPRTILTTQQRRT 186
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 187 FKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 232
>gi|410967547|ref|XP_003990280.1| PREDICTED: LIM/homeobox protein Lhx8 [Felis catus]
Length = 346
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|345321290|ref|XP_003430404.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Ornithorhynchus
anatinus]
Length = 347
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 125
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 126 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 184
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 185 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 244
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 245 TLQKLAERTGLSRRVIQVWFQNCRARHKK 273
>gi|327276679|ref|XP_003223095.1| PREDICTED: LIM/homeobox protein Lhx8-like [Anolis carolinensis]
Length = 379
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 98 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 157
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 158 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 216
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 217 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 276
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 277 TLQKLAERTGLSRRVIQVWFQNCRARHKK 305
>gi|160420135|ref|NP_001104188.1| ISL LIM homeobox 1 [Xenopus laevis]
gi|115528275|gb|AAI24895.1| LOC100126604 protein [Xenopus laevis]
gi|144952770|gb|ABP04039.1| islet-1 [Xenopus laevis]
gi|213626865|gb|AAI70282.1| Islet-1 [Xenopus laevis]
Length = 354
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 119/226 (52%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 YEAAKAKDGNCLD-------------------GDQPNKRP------------RTTITAKQ 215
++ + D QP RP RT + KQ
Sbjct: 133 HDVVERASLGGSDPLSPLHPGRPLQMAAEPICARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|291232097|ref|XP_002736028.1| PREDICTED: lim 1/5-like [Saccoglossus kowalevskii]
Length = 498
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 91/120 (75%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C +C L++KC++R G L+C+ DF +R+GTKC
Sbjct: 5 CAGCDRPILDRFLLNVLDRAWHVKCVQCSDCNCTLSDKCYSREGKLYCRTDFVRRYGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
AGC GI P +VRRA++ V+HL CF C++C++QL+TG+E Y++++ + +CK DY +K+
Sbjct: 65 AGCSHGIAPNDLVRRARNKVFHLKCFTCMVCSKQLSTGEELYVVDENQYICKDDYLGSKS 124
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 194 DGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
D N + G + + PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQ
Sbjct: 258 DSNNISGTK-RRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQ 316
Query: 254 NRRAKEKRLKK-DAGRTRWSQYFRSMK 279
NRR+KE+R+K+ A R +FR+ +
Sbjct: 317 NRRSKERRMKQLSALGARRHHFFRNPR 343
>gi|297473064|ref|XP_002686347.1| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
gi|296489244|tpg|DAA31357.1| TPA: LIM domain family member (lim-4)-like [Bos taurus]
Length = 346
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|402897927|ref|XP_003911988.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-beta [Papio anubis]
Length = 406
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 121/229 (52%), Gaps = 38/229 (16%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 115
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---- 188
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 116 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKD 174
Query: 189 -----------AAKAKD----------------GNCLDGDQPN--KRPRTTITAKQLETL 219
+ K++D G+ DG P KRPRT ++ L
Sbjct: 175 LLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTIPSSPXTRHL 234
Query: 220 KMAY----NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
A + P VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 235 PAAAPGWPDLIPLSLGQVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 283
>gi|194223906|ref|XP_001916580.1| PREDICTED: insulin gene enhancer protein ISL-1 [Equus caballus]
Length = 349
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 121/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ +
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAE 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|224058535|ref|XP_002189228.1| PREDICTED: LIM/homeobox protein Lhx8 [Taeniopygia guttata]
Length = 347
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 125
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 126 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 184
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 185 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 244
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 245 TLQKLAERTGLSRRVIQVWFQNCRARHKK 273
>gi|403257739|ref|XP_003921454.1| PREDICTED: LIM/homeobox protein Lhx8 [Saimiri boliviensis
boliviensis]
Length = 346
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|145587040|gb|ABP87885.1| IP01439p [Drosophila melanogaster]
Length = 467
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
M + +C C I DR+I++V+E ++H CLKC C L C+AR G L+C+ D+
Sbjct: 114 MASPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDY 173
Query: 125 FKRF-GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+ + C GC + I ++V R + V+HL CFACV+C L G++ Y+++ +L C
Sbjct: 174 ERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFC 232
Query: 184 KPDYE-AAKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ DYE + G LDG + KRPRT + +Q K ++ SPKP R
Sbjct: 233 RFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRK 292
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTS 283
VRE L++DTGL +R+VQVWFQN+RAK K++ K A ++ SQ T
Sbjct: 293 VRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATK 352
Query: 284 PKDELKIDLDSNFSHSHGKTA 304
KDE D +S + T+
Sbjct: 353 IKDEAHSDSESQLESPYSTTS 373
>gi|440907910|gb|ELR57994.1| LIM/homeobox protein Lhx8 [Bos grunniens mutus]
Length = 375
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 94 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 153
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 154 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 212
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 213 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 272
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 273 TLQKLAERTGLSRRVIQVWFQNCRARHKK 301
>gi|345321288|ref|XP_001521123.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Ornithorhynchus
anatinus]
Length = 347
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 125
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 126 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 184
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 185 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 244
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 245 TLQKLAERTGLSRRVIQVWFQNCRARHKK 273
>gi|74355157|gb|AAI03939.1| LIM homeobox 6 [Homo sapiens]
Length = 362
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 21/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL FAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHL-AFACFSCKRQLSTGEEFGLVEE-KVL 179
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 180 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 239
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 240 DNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 275
>gi|332222205|ref|XP_003260257.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Nomascus
leucogenys]
Length = 356
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 134
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 135 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 193
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 194 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 253
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 254 TLQKLAERTGLSRRVIQVWFQNCRARHKK 282
>gi|368711326|ref|NP_001243043.1| LIM/homeobox protein Lhx8 isoform 2 [Homo sapiens]
gi|395730366|ref|XP_003775714.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pongo abelii]
gi|410033125|ref|XP_003949492.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pan troglodytes]
gi|426330050|ref|XP_004026039.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Gorilla gorilla
gorilla]
gi|441637563|ref|XP_004090066.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Nomascus
leucogenys]
Length = 346
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|297278964|ref|XP_001097664.2| PREDICTED: LIM/homeobox protein Lhx8-like [Macaca mulatta]
gi|402854981|ref|XP_003892128.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Papio anubis]
Length = 356
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 134
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 135 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 193
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 194 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 253
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 254 TLQKLAERTGLSRRVIQVWFQNCRARHKK 282
>gi|9994171|ref|NP_065204.1| insulin gene enhancer protein ISL-2 [Rattus norvegicus]
gi|1708563|sp|P50480.1|ISL2_RAT RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531218|gb|AAA62161.1| amino acid feature: homeodomain, bp 647 .. 826; amino acid feature:
LIM1, bp 155 .. 307; amino acid feature: LIM2, bp 341 ..
493 [Rattus norvegicus]
Length = 360
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 121/224 (54%), Gaps = 36/224 (16%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 87 IKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 145
Query: 188 --EAAKAKDGNCL----------------DGDQ------------PNKRPRTTITAKQLE 217
E A A G Q R RT + KQL
Sbjct: 146 LLERAAAGSPRSPGPLPGTPPGLHLPDAGSGQQVSLRTHVHKQAEKTTRVRTVLNEKQLH 205
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 206 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 249
>gi|402854983|ref|XP_003892129.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Papio anubis]
Length = 346
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|281366134|ref|NP_648567.2| CG4328 [Drosophila melanogaster]
gi|211938623|gb|ACJ13208.1| FI06571p [Drosophila melanogaster]
gi|272455176|gb|AAF49932.2| CG4328 [Drosophila melanogaster]
Length = 544
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
M + +C C I DR+I++V+E ++H CLKC C L C+AR G L+C+ D+
Sbjct: 191 MASPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDY 250
Query: 125 FKRF-GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+ + C GC + I ++V R + V+HL CFACV+C L G++ Y+++ +L C
Sbjct: 251 ERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFC 309
Query: 184 KPDYE-AAKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ DYE + G LDG + KRPRT + +Q K ++ SPKP R
Sbjct: 310 RFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRK 369
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTS 283
VRE L++DTGL +R+VQVWFQN+RAK K++ K A ++ SQ T
Sbjct: 370 VRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATK 429
Query: 284 PKDELKIDLDSNFSHSHGKTA 304
KDE D +S + T+
Sbjct: 430 IKDEAHSDSESQLESPYSTTS 450
>gi|390466088|ref|XP_002751019.2| PREDICTED: LIM/homeobox protein Lhx8 [Callithrix jacchus]
Length = 346
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|195587560|ref|XP_002083529.1| GD13784 [Drosophila simulans]
gi|194195538|gb|EDX09114.1| GD13784 [Drosophila simulans]
Length = 278
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 115/205 (56%), Gaps = 14/205 (6%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ C CG+ I DRF L+V +WHA CL+C C PL + CF R ++CK D+ K
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKN 64
Query: 128 FGTK---CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
FG A C GI + VRRA++LV+HL CFAC C RQL+TG++F LM+DR ++CK
Sbjct: 65 FGANDSIAARCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDR-VLCK 123
Query: 185 PDY----EAAKAKDGNCLDGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
Y E DGD KR RTT T +QL+ L+ + P E+
Sbjct: 124 AHYLETVEGGTTSSDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLER 183
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR 261
++ TGL RV QVWFQN RA++K+
Sbjct: 184 IASVTGLSKRVTQVWFQNSRARQKK 208
>gi|50083287|ref|NP_001001933.1| LIM/homeobox protein Lhx8 isoform 1 [Homo sapiens]
gi|114557210|ref|XP_524738.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pan troglodytes]
gi|297664648|ref|XP_002810744.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pongo abelii]
gi|397521070|ref|XP_003830626.1| PREDICTED: LIM/homeobox protein Lhx8 [Pan paniscus]
gi|426330048|ref|XP_004026038.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Gorilla gorilla
gorilla]
gi|296434566|sp|Q68G74.2|LHX8_HUMAN RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8
Length = 356
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 134
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 135 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 193
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 194 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 253
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 254 TLQKLAERTGLSRRVIQVWFQNCRARHKK 282
>gi|51494804|gb|AAH40321.1| LIM homeobox 8 [Homo sapiens]
gi|312150920|gb|ADQ31972.1| LIM homeobox 8 [synthetic construct]
Length = 356
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 134
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 135 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 193
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 194 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 253
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 254 TLQKLAERTGLSRRVIQVWFQNCRARHKK 282
>gi|195589788|ref|XP_002084631.1| GD12730 [Drosophila simulans]
gi|194196640|gb|EDX10216.1| GD12730 [Drosophila simulans]
Length = 527
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
M + +C C I DR+I++V+E ++H CLKC C L C+AR G L+C+ D+
Sbjct: 174 MAPPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDY 233
Query: 125 FKRF-GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+ + C GC + I ++V R + V+HL CFACV+C L G++ Y+++ +L C
Sbjct: 234 ERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFC 292
Query: 184 KPDYE-AAKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ DYE + G LDG + KRPRT + +Q K ++ SPKP R
Sbjct: 293 RFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRK 352
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTS 283
VRE L++DTGL +R+VQVWFQN+RAK K++ K A ++ SQ T
Sbjct: 353 VRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATK 412
Query: 284 PKDELKIDLDSNFSHSHGKTA 304
KDE D +S + T+
Sbjct: 413 IKDEAHSDSESQLESPYSTTS 433
>gi|195327095|ref|XP_002030257.1| GM24666 [Drosophila sechellia]
gi|194119200|gb|EDW41243.1| GM24666 [Drosophila sechellia]
Length = 527
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
M + +C C I DR+I++V+E ++H CLKC C L C+AR G L+C+ D+
Sbjct: 174 MAPPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDY 233
Query: 125 FKRF-GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+ + C GC + I ++V R + V+HL CFACV+C L G++ Y+++ +L C
Sbjct: 234 ERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFC 292
Query: 184 KPDYE-AAKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ DYE + G LDG + KRPRT + +Q K ++ SPKP R
Sbjct: 293 RFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRK 352
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTS 283
VRE L++DTGL +R+VQVWFQN+RAK K++ K A ++ SQ T
Sbjct: 353 VRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATK 412
Query: 284 PKDELKIDLDSNFSHSHGKTA 304
KDE D +S + T+
Sbjct: 413 IKDEAHSDSESQLESPYSTTS 433
>gi|395821904|ref|XP_003784270.1| PREDICTED: LIM/homeobox protein Lhx8 [Otolemur garnettii]
Length = 346
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 183
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 184 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 243
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 244 TLQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|355745377|gb|EHH50002.1| hypothetical protein EGM_00758, partial [Macaca fascicularis]
Length = 320
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 39 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 98
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 99 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 157
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 158 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 217
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 218 TLQKLAERTGLSRRVIQVWFQNCRARHKK 246
>gi|340710825|ref|XP_003393984.1| PREDICTED: LIM/homeobox protein Lhx5-like [Bombus terrestris]
Length = 479
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 90/122 (73%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
I C GC I+D+++L VL+R WH C++C +C L +KCF+R LFC+EDFF+R+G
Sbjct: 2 ILSCAGCEKPIMDQYLLNVLDRAWHVECVRCFDCRTTLQDKCFSREAKLFCREDFFRRYG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC+GC GI P +VR+A+D V+HLNCF C++C +Q++TG+E Y+++D K VCK DY +
Sbjct: 62 TKCSGCLQGISPQDLVRKARDKVFHLNCFTCLVCRKQMSTGEELYVLDDNKFVCKQDYLS 121
Query: 190 AK 191
K
Sbjct: 122 GK 123
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A++++PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+RLK+
Sbjct: 248 PRTTIKAKQLEILKSAFSSTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLT 307
Query: 265 DAGRTRWSQYFRSMKG 280
GR+ + R M+G
Sbjct: 308 SMGRSPFFGGSRKMRG 323
>gi|281354377|gb|EFB29961.1| hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
Length = 351
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 70 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 129
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 130 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 188
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 189 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 248
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 249 TLQKLAERTGLSRRVIQVWFQNCRARHKK 277
>gi|62859451|ref|NP_001015899.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
gi|89268071|emb|CAJ83129.1| LIM homeobox 7/8 [Xenopus (Silurana) tropicalis]
gi|110645724|gb|AAI18740.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
Length = 374
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 121/209 (57%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ ++CK D+F+R+GT
Sbjct: 93 CSNCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIYCKLDYFRRYGT 152
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 153 RCSRCGRHIHATDWVRRAKGNVYHLACFACYSCKRQLSTGEEFALVEE-KVLCRVHYDCM 211
Query: 191 ------KAKDGN------------CLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
++GN ++ +P KR RT+ TA QL+ ++ + P
Sbjct: 212 LDNLKRAVENGNRVSVEGALLTEQDINQPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 271
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++LS+ TGL RV+QVWFQN RA+ K+
Sbjct: 272 TLQKLSERTGLSRRVIQVWFQNCRARHKK 300
>gi|158292635|ref|XP_314022.4| AGAP005138-PA [Anopheles gambiae str. PEST]
gi|157017084|gb|EAA44525.4| AGAP005138-PA [Anopheles gambiae str. PEST]
Length = 456
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 17/202 (8%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG-TK 131
CG C I DR+I+KV++ T+H RCL+C C L CF R+G L+C+ D+ + +G +
Sbjct: 150 CGQCCGPICDRYIMKVVDITYHERCLQCTSCSIRLMHSCFMRDGKLYCRFDYERLYGRNR 209
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--- 188
C GC I ++V RA D V+HL CF CV+C +L GD+ Y+++ +L C+PDYE
Sbjct: 210 CLGCGEKIGADELVMRALDNVFHLKCFICVVCGVRLQKGDQ-YVIKQSQLFCRPDYEKEV 268
Query: 189 ---AAKAKDGNC--------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
+ D C +DG + KRPRT +T +Q K +++ SPKP R +RE L
Sbjct: 269 EMFQGYSYDDYCCDDMFQTRIDGRRGPKRPRTILTTQQRRAFKASFDISPKPCRKIREGL 328
Query: 238 SQDTGLDMRVVQVWFQNRRAKE 259
++DTGL +R+VQ Q ++ KE
Sbjct: 329 AKDTGLSIRIVQ-KIQKKQLKE 349
>gi|350396477|ref|XP_003484565.1| PREDICTED: LIM/homeobox protein Lhx5-like [Bombus impatiens]
Length = 419
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 90/122 (73%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
I C GC I+D+++L VL+R WH C++C +C L +KCF+R LFC+EDFF+R+G
Sbjct: 2 ILSCAGCEKPIMDQYLLNVLDRAWHVECVRCFDCRTTLQDKCFSREAKLFCREDFFRRYG 61
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC+GC GI P +VR+A+D V+HLNCF C++C +Q++TG+E Y+++D K VCK DY +
Sbjct: 62 TKCSGCLQGISPQDLVRKARDKVFHLNCFTCLVCRKQMSTGEELYVLDDNKFVCKQDYLS 121
Query: 190 AK 191
K
Sbjct: 122 GK 123
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A++++PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+RLK+
Sbjct: 241 PRTTIKAKQLEILKSAFSSTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLT 300
Query: 265 DAGRTRWSQYFRSMKG 280
GR+ + R M+G
Sbjct: 301 SMGRSPFFGGSRKMRG 316
>gi|444727546|gb|ELW68032.1| LIM/homeobox protein Lhx8 [Tupaia chinensis]
Length = 348
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 123/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 67 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 126
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 127 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 185
Query: 191 ------KAKDGNCL--------DGD----QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + D D +P KR RT+ TA QL+ ++ + P
Sbjct: 186 LDNLKREVENGNGISVEGALLTDQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 245
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 246 TLQKLAERTGLSRRVIQVWFQNCRARHKK 274
>gi|301763072|ref|XP_002916962.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx8-like
[Ailuropoda melanoleuca]
Length = 574
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 303 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 362
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 363 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 421
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 422 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 481
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 482 TLQKLAERTGLSRRVIQVWFQNCRARHKK 510
>gi|383853574|ref|XP_003702297.1| PREDICTED: LIM/homeobox protein Lhx5-like [Megachile rotundata]
Length = 485
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 89/119 (74%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I+D+++L VL+R WH C++C +C L +KCF+R LFC+EDFF+R+GTKC
Sbjct: 5 CAGCEKPIMDQYLLNVLDRAWHVECVRCFDCRTTLQDKCFSREAKLFCREDFFRRYGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
+GC GI P +VR+A+D V+HLNCF C++C +Q++TG+E Y+++D K VCK DY + K
Sbjct: 65 SGCLQGISPQDLVRKARDKVFHLNCFTCLVCRKQMSTGEELYVLDDNKFVCKQDYLSGK 123
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-- 264
PRTTI AKQLE LK A++++PKP RH+REQL+++TGL MRV+QVWFQN+R+KE+RLK+
Sbjct: 255 PRTTIKAKQLEILKSAFSSTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLT 314
Query: 265 DAGRTRWSQYFRSMKG 280
GR+ + R M+G
Sbjct: 315 SMGRSPFFGGSRKMRG 330
>gi|195493804|ref|XP_002094570.1| GE20130 [Drosophila yakuba]
gi|194180671|gb|EDW94282.1| GE20130 [Drosophila yakuba]
Length = 540
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 138/261 (52%), Gaps = 22/261 (8%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDF 124
M + +C C I DR+I++V+E ++H CLKC C L C+AR G L+C+ D+
Sbjct: 187 MAPPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDY 246
Query: 125 FKRF-GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
+ + C GC + I ++V R + V+HL CFACV+C L G++ Y+++ +L C
Sbjct: 247 ERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFC 305
Query: 184 KPDYE-AAKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ DYE + G LDG + KRPRT + +Q K ++ SPKP R
Sbjct: 306 RFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRK 365
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTS 283
VRE L++DTGL +R+VQVWFQN+RAK K++ K A ++ SQ T
Sbjct: 366 VRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATK 425
Query: 284 PKDELKIDLDSNFSHSHGKTA 304
KDE D +S + T+
Sbjct: 426 IKDEAHSDSESQLESPYSTTS 446
>gi|268578911|ref|XP_002644438.1| C. briggsae CBR-LIM-4 protein [Caenorhabditis briggsae]
Length = 346
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 114/214 (53%), Gaps = 5/214 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF-GTK 131
C C I D+F L V R+WH CL+C EC L+ KCF ++ +CKE +F+ G
Sbjct: 100 CAQCQQPIQDKFYLSVDGRSWHESCLQCTECKCRLSNKCFYKDSEFYCKECYFRNHAGPD 159
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
CA C I VRRA++ VYHL CFAC C RQL+TG+E+ L E+ L+CK Y
Sbjct: 160 CASCGRKIGAADWVRRARNFVYHLACFACNQCKRQLSTGEEYSLQEEH-LLCKQHYLELV 218
Query: 192 AKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
D KR RTT QL L+ +N P E+++ TGL RV QVW
Sbjct: 219 EGDSGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIANMTGLSKRVTQVW 278
Query: 252 FQNRRAKEKRL-KKDAGRTRWSQYFRSMKGGTSP 284
FQN RA++K+ +K G SQ RS G +SP
Sbjct: 279 FQNSRARQKKWHQKSDGDNEDSQ--RSSVGPSSP 310
>gi|189234898|ref|XP_967153.2| PREDICTED: similar to lim homeobox protein, partial [Tribolium
castaneum]
Length = 368
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 17/201 (8%)
Query: 71 PKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT 130
P CG C I DRF+L++++ ++H C++C CG L CF ++ L+C+ D+ + F
Sbjct: 1 PLCGMCCRPINDRFLLRIMDVSYHEHCVQCCACGDRLHHTCFVKDSKLYCRLDYDRLFVK 60
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
KC C I P ++V RA + ++HL CF CV+C +L GD Y+++ +L C+ DYE
Sbjct: 61 KCLACSERIAPEELVMRASENIFHLRCFVCVVCGIRLQKGD-LYVIKQGQLFCRIDYEKE 119
Query: 191 KA----------------KDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
DG + KRPRT +T +Q K ++ SPKP R VR
Sbjct: 120 VEMMQGFGHGEFICDELLPSSRAHDGRRGPKRPRTILTTQQRRAFKASFEVSPKPCRKVR 179
Query: 235 EQLSQDTGLDMRVVQVWFQNR 255
E L++DTGL +R+VQVWFQN+
Sbjct: 180 EALAKDTGLSVRIVQVWFQNQ 200
>gi|94957756|ref|NP_001035556.1| LIM/homeobox protein Lhx8 [Gallus gallus]
gi|71800649|gb|AAZ41374.1| LIM homeodomain protein [Gallus gallus]
Length = 347
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 121/209 (57%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 125
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 126 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 184
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ + + P
Sbjct: 185 LDNLKREVENGNGVSMEGALLTEQDVNHPKPAKRARTSFTADQLQVMXAQFAQDNNPDAQ 244
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 245 TLQKLAERTGLSRRVIQVWFQNCRARHKK 273
>gi|26355418|dbj|BAC41153.1| unnamed protein product [Mus musculus]
Length = 349
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 120/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCLVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTWYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|291398678|ref|XP_002715959.1| PREDICTED: LIM homeobox 8 [Oryctolagus cuniculus]
Length = 371
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 96 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 155
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 156 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 214
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 215 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 274
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 275 TLQKLAERTGLSRRVIQVWFQNCRARHKK 303
>gi|348586764|ref|XP_003479138.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cavia porcellus]
Length = 485
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 215 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 274
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 275 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 333
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 334 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 393
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 394 TLQKLAERTGLSRRVIQVWFQNCRARHKK 422
>gi|390356846|ref|XP_785118.3| PREDICTED: LIM/homeobox protein Awh-like [Strongylocentrotus
purpuratus]
Length = 335
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 126/219 (57%), Gaps = 20/219 (9%)
Query: 62 PVYMPIASIPKCGGCGDLILDRFILKVLE-RTWHARCLKCHECGAPLA--EKCFARNGLL 118
P+ + C GCG I+DR++L++ +WH+ CL+C EC L+ + C+ ++ +
Sbjct: 26 PIDTTESKSESCAGCGKAIIDRYLLRIGRGLSWHSSCLRCLECDESLSSHQSCYFKDQNV 85
Query: 119 FCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
FC++ + + FGTKCA C I + VRRA++ +YHL CFAC C RQL+TG+EF ++E+
Sbjct: 86 FCRKCYSREFGTKCARCLRNIDASDWVRRARENIYHLACFACDNCKRQLSTGEEFAMIEN 145
Query: 179 RKLVCKPDY----EAAKAKDGNCLDG------------DQPNKRPRTTITAKQLETLKMA 222
R ++CK Y EA +G+ Q KR RTT T +QLE L+
Sbjct: 146 R-VLCKSHYLELVEATCRSNGDGSGSEYGGEGSGSERPQQKTKRIRTTFTEEQLEVLQAN 204
Query: 223 YNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+N P E+++Q TGL RV QVWFQN RA++K+
Sbjct: 205 FNVDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 243
>gi|58866006|ref|NP_001012219.1| LIM/homeobox protein Lhx8 [Rattus norvegicus]
gi|58476609|gb|AAH90011.1| LIM homeobox 8 [Rattus norvegicus]
Length = 336
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 19/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 65 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 124
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV-----CKP 185
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E++ L C
Sbjct: 125 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCML 184
Query: 186 DYEAAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
D + ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 185 DNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 244
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 245 LQKLAERTGLSRRVIQVWFQNCRARHKK 272
>gi|88954018|gb|ABD59002.1| LIM-homeodomain protein AmphiLim1/5 [Branchiostoma floridae]
Length = 464
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 84/112 (75%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC +LDRF+L VL+R WHA+C++C +C L EKCF R+ L+C+EDFF+RFGTKC
Sbjct: 5 CAGCERPVLDRFLLNVLDRAWHAKCVRCSDCSCRLTEKCFTRDSKLYCREDFFRRFGTKC 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
AGC GI P +VRRA++ V+HL CF C CA+Q+ TG+E ++++D K +CK
Sbjct: 65 AGCTQGILPNDLVRRARNKVFHLKCFTCAACAKQMATGEELFVVDDDKFICK 116
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK-D 265
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 248 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 307
Query: 266 AGRTRWSQYFR 276
A R +Q+FR
Sbjct: 308 ALGARRAQFFR 318
>gi|34733869|gb|AAQ81867.1| islet 2 [Ambystoma mexicanum]
Length = 361
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 127/243 (52%), Gaps = 44/243 (18%)
Query: 62 PVYMPIASIPK-------CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC-- 111
PV P+ P C GCG I D FI++V + WHA CLKC EC L E C
Sbjct: 9 PVLGPMGEHPNKKHTLALCVGCGSQIHDPFIMRVSPDLEWHAACLKCAECSQYLDETCTC 68
Query: 112 FARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGD 171
F R+G +CK D+ + FG KCA C +G + +V RA++ VYH+ CF C +C RQL GD
Sbjct: 69 FVRDGKTYCKRDYIRLFGVKCAQCGLGFSSSDLVMRARERVYHMECFRCSLCNRQLLPGD 128
Query: 172 EFYLMEDRKLVCKP-----DYEAAKAKD----------------GNCLDGDQPNKRP--- 207
EF L E +L+C+ D EAA + + + G Q + RP
Sbjct: 129 EFCLRE-HELLCRAEHSHLDREAAGSPPSPTSPGPLQGGRPLHLADSVSGRQTSLRPHAH 187
Query: 208 ---------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
RT + KQL TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K
Sbjct: 188 KQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 247
Query: 259 EKR 261
+K+
Sbjct: 248 DKK 250
>gi|426218775|ref|XP_004003612.1| PREDICTED: LIM/homeobox protein Lhx8 [Ovis aries]
Length = 442
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 161 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 220
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 221 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 279
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 280 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 339
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 340 TLQKLAERTGLSRRVIQVWFQNCRARHKK 368
>gi|390339027|ref|XP_781774.3| PREDICTED: insulin gene enhancer protein ISL-1-like
[Strongylocentrotus purpuratus]
Length = 402
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 121/221 (54%), Gaps = 33/221 (14%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC +C L E C F R+G +CK D+ + FG
Sbjct: 51 CVGCGGSIQDQYILRVAPDLEWHAACLKCADCCTYLDETCTCFVRDGKPYCKRDYLRLFG 110
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C G V RA++ +YH++CF CV C+RQL GDEF L ED L CK D+E
Sbjct: 111 TKCAKCSQGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALRED-GLFCKADHEV 169
Query: 190 AK----------AKDGNCLDGDQ----PNK---------------RPRTTITAKQLETLK 220
+ N ++ + PN+ R RT + KQL TL+
Sbjct: 170 MERPGDRDQVPNVNHRNYINATRAEPMPNRTSSGRSHVHKQEKPTRVRTVLNEKQLHTLR 229
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Y +P+P ++EQL + T L RV++VWFQN+R K+K+
Sbjct: 230 TCYAANPRPDALMKEQLVEMTQLSPRVIRVWFQNKRCKDKK 270
>gi|345802215|ref|XP_547330.3| PREDICTED: LIM/homeobox protein Lhx8 [Canis lupus familiaris]
Length = 462
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 191 CNSCGREIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 250
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 251 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 309
Query: 191 ------KAKDGNCL------------DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 310 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 369
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 370 TLQKLAERTGLSRRVIQVWFQNCRARHKK 398
>gi|194869786|ref|XP_001972521.1| GG13839 [Drosophila erecta]
gi|190654304|gb|EDV51547.1| GG13839 [Drosophila erecta]
Length = 531
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 136/252 (53%), Gaps = 18/252 (7%)
Query: 22 NGLTVGICASKLHDLLHEAHAGSSSSFS--SSFNDVDYEGI---MPVYMPIASIPKCGGC 76
N +T+G C+ D A S+S + + + G+ + + M + +C C
Sbjct: 130 NRITLGECSLNGMDGFATPAAPPSASNTPQAPLGMASHSGMGMELGLAMAPPQLSQCAHC 189
Query: 77 GDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF-GTKCAGC 135
I DR+I++V+E ++H CLKC C L C+AR G L+C+ D+ + + C GC
Sbjct: 190 CQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIRNHCLGC 249
Query: 136 EMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-AAKAKD 194
+ I ++V R + V+HL CFACV+C L G++ Y+++ +L C+ DYE +
Sbjct: 250 GLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFCRFDYEKEVEMLQ 308
Query: 195 G----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
G LDG + KRPRT + +Q K ++ SPKP R VRE L++DTGL
Sbjct: 309 GYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLS 368
Query: 245 MRVVQVWFQNRR 256
+R+VQVWFQN+R
Sbjct: 369 LRIVQVWFQNQR 380
>gi|2285798|dbj|BAA21649.1| LIM-homeodomain protein [Mus musculus]
Length = 426
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 19/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 155 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 214
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV-----CKP 185
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E++ L C
Sbjct: 215 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCML 274
Query: 186 DYEAAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
D + ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 275 DNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 334
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 335 LQKLAERTGLSRRVIQVWFQNCRARHKK 362
>gi|113195680|ref|NP_034843.2| LIM/homeobox protein Lhx8 [Mus musculus]
gi|341941136|sp|O35652.4|LHX8_MOUSE RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8; AltName: Full=L3; AltName: Full=LIM/homeobox protein
Lhx7; Short=LIM homeobox protein 7
gi|3172042|dbj|BAA28628.1| LIM-homeodomain protein [Mus musculus]
gi|74227158|dbj|BAE38359.1| unnamed protein product [Mus musculus]
gi|116138618|gb|AAI25284.1| LIM homeobox protein 8 [Mus musculus]
gi|116138795|gb|AAI25282.1| LIM homeobox protein 8 [Mus musculus]
gi|148679947|gb|EDL11894.1| LIM homeobox protein 8, isoform CRA_b [Mus musculus]
gi|219519204|gb|AAI44769.1| LIM homeobox protein 8 [Mus musculus]
gi|1587483|prf||2206477A LIM homeo domain transcription factor
Length = 367
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 19/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 155
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV-----CKP 185
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E++ L C
Sbjct: 156 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCML 215
Query: 186 DYEAAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
D + ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 216 DNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 275
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 276 LQKLAERTGLSRRVIQVWFQNCRARHKK 303
>gi|44194074|gb|AAS46773.1| insulin enhancer binding protein [Rattus norvegicus]
Length = 326
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 120/226 (53%), Gaps = 35/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G + K D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYSKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA C +G V RA+ VYH+ CF CV C+RQL GDEF L ED L C+ D
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRED-GLFCRAD 132
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 133 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 192
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 193 LHTLRTRYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238
>gi|149026292|gb|EDL82535.1| rCG29002 [Rattus norvegicus]
Length = 367
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 19/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 155
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV-----CKP 185
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E++ L C
Sbjct: 156 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCML 215
Query: 186 DYEAAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
D + ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 216 DNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 275
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 276 LQKLAERTGLSRRVIQVWFQNCRARHKK 303
>gi|195012862|ref|XP_001983762.1| GH16074 [Drosophila grimshawi]
gi|193897244|gb|EDV96110.1| GH16074 [Drosophila grimshawi]
Length = 583
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 124/210 (59%), Gaps = 13/210 (6%)
Query: 59 GIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLL 118
G M M ++ C C I DR+I++V++ ++H CLKC C L C+AR+G L
Sbjct: 222 GGMGDTMALSMSNHCAYCCQPICDRYIMRVVDSSFHEGCLKCTACAQHLVHSCYARDGKL 281
Query: 119 FCKEDFFKRF-GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+C+ D+ + + +C GC I ++V R+Q+ ++HL CFACV+C L G++ Y+++
Sbjct: 282 YCRLDYERLYLRNRCLGCGHKIAGDELVMRSQENIFHLKCFACVVCGALLKKGEQ-YVVK 340
Query: 178 DRKLVCKPDYEAA----KAKD--GNCL-----DGDQPNKRPRTTITAKQLETLKMAYNTS 226
+L C+ DYE + D G+ L DG + KRPRT + +Q K ++ S
Sbjct: 341 QGQLFCRFDYEKEVEMLQGYDFYGDDLFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVS 400
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
PKP R VRE L++DTGL +R+VQVWFQN+R
Sbjct: 401 PKPCRKVRENLAKDTGLSLRIVQVWFQNQR 430
>gi|3319763|emb|CAA04012.1| Lhx7 protein [Mus musculus]
Length = 365
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 19/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 95 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 154
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV-----CKP 185
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E++ L C
Sbjct: 155 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCML 214
Query: 186 DYEAAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
D + ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 215 DNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 274
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 275 LQKLAERTGLSRRVIQVWFQNCRARHKK 302
>gi|332250744|ref|XP_003274511.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5 [Nomascus
leucogenys]
Length = 323
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 114/208 (54%), Gaps = 36/208 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L+EKCF+R G L+CK DFF+
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRPDAPNI 64
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
A V+ R + + D E A
Sbjct: 65 A---------------------------VLAKR-------LMIFDKTDNSTSSDKETANN 90
Query: 193 KDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWF 252
++ G + + PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+QVWF
Sbjct: 91 ENEEQNSGTK-RRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWF 149
Query: 253 QNRRAKEKRLKK-DAGRTRWSQYFRSMK 279
QNRR+KE+R+K+ A R +FRS +
Sbjct: 150 QNRRSKERRMKQLSALGARRHAFFRSPR 177
>gi|351696280|gb|EHA99198.1| LIM/homeobox protein Lhx8 [Heterocephalus glaber]
Length = 348
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 121/209 (57%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 67 CNSCGLEIVDKYLLKVNGLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 126
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 127 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDFM 185
Query: 189 ----AAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 186 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 245
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 246 TLQKLAERTGLSRRVIQVWFQNCRARHKK 274
>gi|51571947|ref|NP_001003980.1| LIM/homeobox protein Lhx8 [Danio rerio]
gi|50953779|gb|AAT90496.1| Lhx7 [Danio rerio]
gi|108742021|gb|AAI17602.1| LIM homeobox 8 [Danio rerio]
Length = 332
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 21/209 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ + +FCK D+F+++GT
Sbjct: 51 CTSCGTEIVDKYLLKVNDMCWHVRCLSCSVCQTSLGRHISCYIKEKEIFCKLDYFRKYGT 110
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
+CA C I VRRA+ YHL CFAC C RQL+TG+EF L+++R ++C+ Y+
Sbjct: 111 RCAHCGRNIHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDER-VLCRVHYDCM 169
Query: 189 ------AAKAKDGNCLDG----------DQPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
A + G ++G +P KR RT+ TA QL+ ++ + P
Sbjct: 170 LDNLKRAMENGKGVNVEGAVPSEQEVNQPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 229
Query: 233 VREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 230 TLQKLAERTGLSRRVIQVWFQNCRARHKK 258
>gi|281349042|gb|EFB24626.1| hypothetical protein PANDA_015045 [Ailuropoda melanoleuca]
Length = 329
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 118/224 (52%), Gaps = 41/224 (18%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 8 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 67
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK--------- 180
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +
Sbjct: 68 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRERARRTRRPRRRW 127
Query: 181 -----------LVCKPDYEAAKAKDGNCLDGDQPNKRP------------RTTITAKQLE 217
L P A G QP+ RP RT + KQL
Sbjct: 128 RGTGRAGGGPVLTSGPPVLADPG------SGRQPSLRPHVHKQTEKTTRVRTVLNEKQLH 181
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 182 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 225
>gi|195126142|ref|XP_002007533.1| GI12337 [Drosophila mojavensis]
gi|193919142|gb|EDW18009.1| GI12337 [Drosophila mojavensis]
Length = 586
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 120/197 (60%), Gaps = 13/197 (6%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF-GT 130
+C C I DR+I++V++ ++H CLKC C L C+AR+G L+C+ D+ + +
Sbjct: 229 QCTYCCQPICDRYIMRVVDNSFHEGCLKCSACSLHLVHSCYARDGKLYCRIDYERLYLRN 288
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C GC I ++V R+Q+ ++HL CFACV+C L G++ Y+++ +L C+ DYE
Sbjct: 289 RCLGCGHKIAADELVMRSQENIFHLKCFACVVCGAVLKKGEQ-YVVKQGQLFCRFDYEKE 347
Query: 191 ----KAKD--GNCL-----DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ D G+ L DG + KRPRT + +Q K ++ SPKP R VRE L++
Sbjct: 348 VEMLQGYDYYGDDLFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAK 407
Query: 240 DTGLDMRVVQVWFQNRR 256
DTGL +R+VQVWFQN+R
Sbjct: 408 DTGLSLRIVQVWFQNQR 424
>gi|125823566|ref|XP_001339831.1| PREDICTED: LIM/homeobox protein Lhx8-like [Danio rerio]
Length = 356
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 116/208 (55%), Gaps = 20/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C C + ILDR +LKV + WHARCL C C L+E+ C+ R +FCK +F+RF T
Sbjct: 86 CTRCREHILDRHLLKVNDMCWHARCLSCSVCQTTLSEQTTCYVREREIFCKLHYFRRFQT 145
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA- 189
C+ C + + V RA+ VYHL CF+C C RQL+TG+EF L+ + KL+C+ Y +
Sbjct: 146 WCSCCRETLHSSDWVHRAKGNVYHLACFSCFSCKRQLSTGEEFALVGE-KLLCRIHYSSM 204
Query: 190 ----------------AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
KA C +P+KR RT+ TA QL+ ++ + P +
Sbjct: 205 LDKLNRPAEKGKSVSPEKALAAGCEIKQKPSKRARTSFTADQLQVMQAQFVQDNNPDAQM 264
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+ L++ TGL RV+QVWFQN RA+ K+
Sbjct: 265 LQSLAEQTGLSRRVIQVWFQNCRARHKK 292
>gi|195376251|ref|XP_002046910.1| GJ12228 [Drosophila virilis]
gi|194154068|gb|EDW69252.1| GJ12228 [Drosophila virilis]
Length = 564
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 122/200 (61%), Gaps = 13/200 (6%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF 128
++ +C C I DR+I++V++ ++H CLKC C L C+AR+G L+C+ D+ + +
Sbjct: 210 ALNQCTFCCQPICDRYIMRVVDNSFHEGCLKCTACSLHLVHSCYARDGKLYCRIDYERLY 269
Query: 129 -GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+C GC I ++V R+Q+ ++HL CFACV+C L G++ Y+++ +L C+ DY
Sbjct: 270 LRNRCLGCGHKIAADELVMRSQENIFHLKCFACVVCGALLKKGEQ-YVVKQGQLFCRFDY 328
Query: 188 EAA----KAKD--GNCL-----DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
E + D G+ L DG + KRPRT + +Q K ++ SPKP R VRE
Sbjct: 329 EKEVEMLQGYDYYGDDLFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVREN 388
Query: 237 LSQDTGLDMRVVQVWFQNRR 256
L++DTGL +R+VQVWFQN+R
Sbjct: 389 LAKDTGLSLRIVQVWFQNQR 408
>gi|74213688|dbj|BAE35644.1| unnamed protein product [Mus musculus]
Length = 367
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 19/208 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 155
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV-----CKP 185
+C+ C I VRRA+ VYHL CFAC C RQL+TG+EF L+E++ L C
Sbjct: 156 RCSRCGRHIHSIDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFDCML 215
Query: 186 DYEAAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
D + ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 216 DNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQT 275
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 276 LQKLAERTGLSRRVIQVWFQNCRARHKK 303
>gi|3319761|emb|CAA04011.1| Lhx6 protein [Mus musculus]
Length = 361
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 20/218 (9%)
Query: 63 VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFC 120
++ P A C CG ILDR++LKV H RCL+C C L ++ C+ +N ++C
Sbjct: 78 LFRPSAGKNICSSCGLEILDRYLLKVNNLICHVRCLECSVCRTSLRQQNSCYIKNKEIYC 137
Query: 121 KEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRK 180
K D+F RFGTKCA C I + VRRA+ YHL CFAC C R ++TG+EF L+E+ K
Sbjct: 138 KMDYFSRFGTKCALCGRQIYASDWVRRARGNAYHLACFACFSCKRHVSTGEEFVLVEE-K 196
Query: 181 LVCKPDYEAA------KAKDGNCLDGD-----------QPNKRPRTTITAKQLETLKMAY 223
+ C+ Y+ A++GN L + +P KR RT+ TA+QL+ ++ +
Sbjct: 197 VFCRIHYDTMIENLKRAAENGNVLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQF 256
Query: 224 NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 257 AQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|321469905|gb|EFX80883.1| hypothetical protein DAPPUDRAFT_50562 [Daphnia pulex]
Length = 315
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 114/221 (51%), Gaps = 32/221 (14%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC ECG L E C F R+G FC+ D+ + FG
Sbjct: 1 CVGCGSPIQDQYILRVAPDLEWHASCLKCVECGIFLDENCTCFVRDGKTFCRRDYVRLFG 60
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
KC C +G + V RA+ +YH+ CF C +C RQL GDEF L +D L CK D++
Sbjct: 61 AKCDKCGLGFSRSDFVMRAKSKIYHIECFRCALCQRQLVPGDEFALRDDGNLFCKDDHDQ 120
Query: 190 A-----------------------------KAKDGNCLDGDQPNKRPRTTITAKQLETLK 220
G D R RT + KQL TL+
Sbjct: 121 TNNNNNNSSNQNNNNNNNNGGGMGGVGGSGGVSGGGGGGSDGKPTRVRTVLNEKQLHTLR 180
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 181 TCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 221
>gi|259013450|ref|NP_001158468.1| ISL LIM homeobox 1 [Saccoglossus kowalevskii]
gi|197320557|gb|ACH68440.1| islet homeobox protein [Saccoglossus kowalevskii]
Length = 383
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 118/227 (51%), Gaps = 39/227 (17%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG+ I D+FIL+V + WHA CLKC +C L E C F R+ +CK + + FG
Sbjct: 16 CVGCGNQIQDQFILRVAPDLEWHASCLKCTDCNQYLDETCTCFVRDSKTYCKRCYVRLFG 75
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C +G V RA++ ++H++CF CV C+RQL GDEF L +D L CK D++
Sbjct: 76 TKCAKCNLGFSKNDFVMRARNKIFHIDCFRCVACSRQLIPGDEFALRDD-GLFCKADHDV 134
Query: 190 AKAKDGNCL-----------------------------------DGDQPNKRPRTTITAK 214
+ G + R RT + K
Sbjct: 135 VERASGEVNGNNNNNNNHRTYMASHAEPMNNNRSGSLRPHVHKQETHHKTTRVRTVLNEK 194
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL TL+ YN +P+P ++EQL++ T L RV++VWFQN+R K+K+
Sbjct: 195 QLHTLRTCYNANPRPDALMKEQLTEMTNLSPRVIRVWFQNKRCKDKK 241
>gi|194747131|ref|XP_001956006.1| GF24989 [Drosophila ananassae]
gi|190623288|gb|EDV38812.1| GF24989 [Drosophila ananassae]
Length = 554
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 115/197 (58%), Gaps = 13/197 (6%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF-GT 130
+C C I DR+I++V+E ++H CLKC C L CFAR G L+C+ D+ + +
Sbjct: 206 QCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCFAREGKLYCRIDYERLYIRN 265
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-A 189
+C GC I ++V R + V+HL CFACV+C L G++ Y+++ +L C+ DYE
Sbjct: 266 RCLGCGHKIASDELVMRCHENVFHLKCFACVVCGVLLKKGEQ-YVVKQGQLFCRFDYEKE 324
Query: 190 AKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ G LDG + KRPRT + +Q K ++ SPKP R VRE L++
Sbjct: 325 VEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAK 384
Query: 240 DTGLDMRVVQVWFQNRR 256
+TGL +R+VQVWFQN+R
Sbjct: 385 ETGLSLRIVQVWFQNQR 401
>gi|260447067|ref|NP_001159513.1| ISL LIM homeobox 2 [Xenopus (Silurana) tropicalis]
gi|257043811|gb|ACV33233.1| islet 2 [Xenopus (Silurana) tropicalis]
Length = 333
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 9/202 (4%)
Query: 68 ASIPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDF 124
A + C GCG ILD++IL+V + WHA CLKC EC L E C F R+G +CK D+
Sbjct: 22 AGLAVCVGCGSHILDQYILRVSPDLEWHAACLKCAECSQYLDENCTCFVRDGKTYCKRDY 81
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
+ F +C C+ +P +++V R + VYH +CF C +C+R+L G+E L D+ L+C
Sbjct: 82 IRLFSARCPRCQGTLPRSELVMRVGERVYHTDCFRCSVCSRRLLPGEEISL-RDQDLLCG 140
Query: 185 PDYEAAKAKDGNCLDG-----DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
++ + + + L + R RT + KQL TL+ Y +P+P ++EQL +
Sbjct: 141 AEHNLSDSGRPSSLRSHIHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVE 200
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV++VWFQN+R K+K+
Sbjct: 201 MTGLSPRVIRVWFQNKRCKDKK 222
>gi|268553183|ref|XP_002634577.1| C. briggsae CBR-MEC-3 protein [Caenorhabditis briggsae]
gi|62288356|sp|P34764.2|MEC3_CAEBR RecName: Full=Mechanosensory protein 3
Length = 318
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 129/247 (52%), Gaps = 56/247 (22%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 28 KCYCCNEQIFDRFICRMDNRSYHENCVKCAICESPLAEKCFWKNGTIYCSQHYYKDYSAH 87
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 88 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCTLCGRHLSPGEQI-LVDDTMMTVSCMSHY 146
Query: 183 -------CKP-------------------------DYEAAKAKDGN------------CL 198
C P ++ K D C
Sbjct: 147 PLPMDDPCPPVGPSDVPSCSSDASAVAPYPMDESFPFQIKKEVDAYGYNFEHYSFSDFCD 206
Query: 199 DGDQPNKR--PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
D + KR PRTTI QL+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQNRR
Sbjct: 207 DDSRMLKRRGPRTTIRQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQNRR 266
Query: 257 AKEKRLK 263
+KE+RLK
Sbjct: 267 SKERRLK 273
>gi|143347423|gb|ABO93221.1| Islet [Platynereis dumerilii]
Length = 414
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 119/236 (50%), Gaps = 48/236 (20%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC +C L E C F R G +CK D+ + FG
Sbjct: 22 CVGCGSKIQDQYILRVAPDLEWHAACLKCADCDQFLDETCTCFVREGKTYCKRDYARLFG 81
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKCA C V RA++ +YH++CF CV C+RQL GDEF L +D L CK D+E
Sbjct: 82 TKCARCTESFSKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALRDD-GLFCKSDHEV 140
Query: 190 AK-----------------------------AKDGNCLDG---------------DQPNK 205
+ K G+ G +
Sbjct: 141 LERAQNGATPTPENNNNNVNALNNNEKEIKTEKTGSIKSGQAEHGSRRGNSGHKSEHKPT 200
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
R RT + KQL TL+ YN +P+P ++EQL++ TGL RV+ VWFQN+R K+K+
Sbjct: 201 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLTEMTGLSPRVIGVWFQNKRCKDKK 256
>gi|395541258|ref|XP_003772563.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 365
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 20/209 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C GC ILD+++LKV + WH +CL C C L + CF ++ +FCK D+ ++FGT
Sbjct: 85 CSGCRLEILDKYLLKVNDMYWHMQCLCCSVCQTSLGKHATCFIKDNTIFCKIDYLRKFGT 144
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
C GC + + V++A+ VYHL CF C C RQL+TGDEF L+E+ K++C+ Y+
Sbjct: 145 CCCGCGRYVCSSDWVQKARGYVYHLACFVCFSCKRQLSTGDEFALVEE-KVLCRIHYDGL 203
Query: 191 ------KAKDGNCLDGD-----------QPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
+A++GN + + +P KR RT T QL+ ++ Y P
Sbjct: 204 EDSLKREAENGNRISMEDALLLEDMKDLKPAKRARTNFTVDQLQIMQGHYTQENNPNAQA 263
Query: 234 REQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++LS+ TGL + VQ+WFQN RA++K+L
Sbjct: 264 LQKLSERTGLSRKTVQIWFQNCRARQKKL 292
>gi|410924249|ref|XP_003975594.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 338
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 115/211 (54%), Gaps = 23/211 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C C I+DR++LKV + WH RCL C C L C+ + +FCK D+F+R+GT
Sbjct: 58 CTSCNKDIVDRYLLKVNDLCWHVRCLSCTVCKTSLGRHVSCYIKEKQVFCKLDYFRRYGT 117
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
+C C I + VRR + +HL CF+C C RQL+TG+E L+E+R + C+P YE
Sbjct: 118 RCTRCGRNINSSDWVRRVRGSTFHLACFSCSSCKRQLSTGEECGLLENR-VFCRPHYEMV 176
Query: 189 ------AAKAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPA 230
A K + + DG+ +P KR RT+ T QL+ ++ + P
Sbjct: 177 VENIKRAKKNGEPDSNDGEDMGDKEEASTTARPAKRARTSFTVDQLQVMQTQFAKDSNPD 236
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++LS TGL RV+QVWFQN RA++K+
Sbjct: 237 AQTLQRLSDRTGLSRRVIQVWFQNCRARQKK 267
>gi|158296015|ref|XP_316574.4| AGAP006536-PA [Anopheles gambiae str. PEST]
gi|157016309|gb|EAA11386.5| AGAP006536-PA [Anopheles gambiae str. PEST]
Length = 291
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 11/199 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C CG+ I D+++ + WH CL+C C L + C+ R+ ++C+ D+ K FG
Sbjct: 36 CTACGEPIADKYLFDIDGCAWHGSCLRCSVCLTLLERQPSCYFRDRQVYCRTDYIKMFGA 95
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KC+ C I + VR+A+DLV+HL CF+C C RQL+TG++F L++D K++CK Y
Sbjct: 96 KCSKCCRTIAASDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDD-KVMCKIHYMDT 154
Query: 188 --EAAKAKDGNC-LDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ + + D C DG N KR RTT T +QL+ L+ + P E+++Q TG
Sbjct: 155 VEDGSNSSDDGCSSDGYNKNKSKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAQLTG 214
Query: 243 LDMRVVQVWFQNRRAKEKR 261
L RV QVWFQN RA++K+
Sbjct: 215 LSKRVTQVWFQNSRARQKK 233
>gi|195440768|ref|XP_002068212.1| GK12807 [Drosophila willistoni]
gi|194164297|gb|EDW79198.1| GK12807 [Drosophila willistoni]
Length = 554
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 22/249 (8%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF-GT 130
+C C I DR+I++V++ ++H CLKC C L C+A++G LFC+ D+ + +
Sbjct: 207 QCSYCCQPICDRYIMRVVDNSFHESCLKCTACSLHLVHSCYAKDGKLFCRIDYERLYIRN 266
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C GC I ++V R + V+HL CFACV+C L G++ Y+++ +L C+ DYE
Sbjct: 267 RCLGCGHKIAHDELVMRCHENVFHLKCFACVVCGSLLKKGEQ-YVVKQGQLFCRFDYEKE 325
Query: 191 ----KAKDGNC-------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ D +DG + KRPRT + +Q K ++ SPKP R VRE L++
Sbjct: 326 VEMLQGYDFYSDDIFPPKMDGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAK 385
Query: 240 DTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTSPKDELKI 290
+TGL +R+VQVWFQN+RAK K++ K A ++ SQ + T KDE
Sbjct: 386 ETGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESQDSSLATKIKDEAHS 445
Query: 291 DLDSNFSHS 299
D +S S
Sbjct: 446 DSESPMESS 454
>gi|270002858|gb|EEZ99305.1| LIM homeobox transcription factor 1, beta 2 [Tribolium castaneum]
Length = 353
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 17/196 (8%)
Query: 76 CGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGC 135
C I DRF+L++++ ++H C++C CG L CF ++ L+C+ D+ + F KC C
Sbjct: 2 CCRPINDRFLLRIMDVSYHEHCVQCCACGDRLHHTCFVKDSKLYCRLDYDRLFVKKCLAC 61
Query: 136 EMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA--- 192
I P ++V RA + ++HL CF CV+C +L GD Y+++ +L C+ DYE
Sbjct: 62 SERIAPEELVMRASENIFHLRCFVCVVCGIRLQKGD-LYVIKQGQLFCRIDYEKEVEMMQ 120
Query: 193 -------------KDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
DG + KRPRT +T +Q K ++ SPKP R VRE L++
Sbjct: 121 GFGHGEFICDELLPSSRAHDGRRGPKRPRTILTTQQRRAFKASFEVSPKPCRKVREALAK 180
Query: 240 DTGLDMRVVQVWFQNR 255
DTGL +R+VQVWFQN+
Sbjct: 181 DTGLSVRIVQVWFQNQ 196
>gi|227430299|ref|NP_001153058.1| LIM homeobox 2a [Danio rerio]
gi|226434001|gb|ACO56117.1| LIM homeodomain protein 2a [Danio rerio]
Length = 320
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 123/247 (49%), Gaps = 57/247 (23%)
Query: 71 PKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRF 128
P C GCG LI DRF L ER WH RCLKC C L + CF+++G ++CKED+++RF
Sbjct: 11 PVCAGCGALISDRFYLLAAERRWHERCLKCSACQTDLESELTCFSKHGDIYCKEDYYRRF 70
Query: 129 GT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD- 186
+ +CA C +GI T++V RA+DLVYHL+CF+C C + L TGD Y M++ + C+
Sbjct: 71 SSQRCARCHLGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDH-YGMKETSVYCRAHI 129
Query: 187 ---------YEAAKAKDGN----CLDGDQP------------------------------ 203
Y +++ N D + P
Sbjct: 130 QRECHADLYYSDMSSRETNSESHTYDEESPVHRARVRRRKNNSTADHIAYSSDVSDLGVD 189
Query: 204 ---------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
+KR RT+ QL T++ + + P ++L+Q TGL RV+QVWFQN
Sbjct: 190 LSERVSCQKSKRMRTSFKHHQLRTMQSFFTHNHNPDAKDLKELAQKTGLTKRVLQVWFQN 249
Query: 255 RRAKEKR 261
RAK +R
Sbjct: 250 ARAKFRR 256
>gi|260794979|ref|XP_002592484.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277704|gb|EEN48495.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 330
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 123/259 (47%), Gaps = 63/259 (24%)
Query: 65 MPIASIPK------CGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNG 116
MP+ ++ CGGCG+ I DRF L ++R WH+ CLKC EC L CF+++G
Sbjct: 1 MPVVNLDTKPGSIACGGCGEKIQDRFFLHAVDRQWHSACLKCCECDVRLDCELTCFSKDG 60
Query: 117 LLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL 175
++C+ED+++RF +C C +GI ++V RA+D VYHL CF CV C + L TGDEF
Sbjct: 61 RIYCREDYYRRFAVQRCGRCHLGITAREMVMRARDSVYHLACFTCVTCDKALTTGDEFG- 119
Query: 176 MEDRKLVCKPDYEAAKAKDG---------------------------------------- 195
M+ + C+ YE +G
Sbjct: 120 MQGSAIYCRYHYETFMRSEGRYGAAMGSKPLPHSPYYHSPGGVSYRGRPRKRGDSDSYCS 179
Query: 196 --------NCLD-----GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
N LD G KR RT+ QL TLK + + P +QL+Q TG
Sbjct: 180 VPGSSDNENDLDLNGHGGATKTKRIRTSFKHHQLRTLKSYFAINHNPDSKDLQQLAQKTG 239
Query: 243 LDMRVVQVWFQNRRAKEKR 261
L RV+QVWFQN RAK +R
Sbjct: 240 LTKRVLQVWFQNARAKHRR 258
>gi|2384698|gb|AAB70190.1| homeobox protein Lim-1 [Xenopus laevis]
Length = 112
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 83/109 (76%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+RFGTKC
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKL 181
AGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K
Sbjct: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF 112
>gi|198464778|ref|XP_001353365.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
gi|198149875|gb|EAL30872.2| GA18112 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 22/254 (8%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF-GT 130
C C I DR+I++V++ ++H CLKC C L C+AR G L+C+ D+ + +
Sbjct: 208 NCAHCCRPISDRYIMRVVDNSFHEGCLKCTACSLHLVHSCYAREGKLYCRIDYERLYIRN 267
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-A 189
+C GC + ++V R + V+HL CFACV+C L G++ Y+++ +L C+ DYE
Sbjct: 268 RCLGCGHKVAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFCRFDYEKE 326
Query: 190 AKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ G LDG + KRPRT + +Q + K ++ SPKP R VRE L++
Sbjct: 327 VEMLQGYDYYGDDLFPPKLDGRRGPKRPRTILNTQQRRSFKASFEVSPKPCRKVRENLAK 386
Query: 240 DTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTSPKDELKI 290
+TGL +R+VQVWFQN+RAK K++ K A ++ SQ T KDE
Sbjct: 387 ETGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESHDSSLATKIKDEAHS 446
Query: 291 DLDSNFSHSHGKTA 304
D +S + +
Sbjct: 447 DSESQMESPYSNAS 460
>gi|17568917|ref|NP_508669.1| Protein LIM-4 [Caenorhabditis elegans]
gi|1621631|gb|AAB17273.1| putative transcription factor LIM-4 [Caenorhabditis elegans]
gi|351063300|emb|CCD71434.1| Protein LIM-4 [Caenorhabditis elegans]
Length = 355
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 106/207 (51%), Gaps = 12/207 (5%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF 125
P A I C C I D+F L + R +H CL+C C PL+ KCF ++ +CK +F
Sbjct: 91 PDAVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNKCFYKDKTFYCKGCYF 150
Query: 126 K-----------RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFY 174
+ G KCA C+ I T VRRA++ VYHL CF+C C RQL+TG+E+
Sbjct: 151 RTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYA 210
Query: 175 LMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
L E L+CK + D KR RTT QL L+ +N P
Sbjct: 211 LQEG-NLLCKQHFLELVEGDSGVSSQKAKTKRVRTTFAEDQLSVLQTYFNRDSNPDGADL 269
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKR 261
E+++ TGL RV QVWFQN RA++K+
Sbjct: 270 EKIASMTGLSKRVTQVWFQNSRARQKK 296
>gi|258504160|gb|ACV72774.1| LIM-4 [Caenorhabditis remanei]
gi|258504162|gb|ACV72775.1| LIM-4 [Caenorhabditis remanei]
gi|258504164|gb|ACV72776.1| LIM-4 [Caenorhabditis remanei]
gi|258504184|gb|ACV72786.1| LIM-4 [Caenorhabditis remanei]
gi|258504186|gb|ACV72787.1| LIM-4 [Caenorhabditis remanei]
Length = 285
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 100/182 (54%), Gaps = 3/182 (1%)
Query: 82 DRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF--KRFGTKCAGCEMGI 139
D+F L V R WH C +C C PL+ KCF ++ +CK +F + FG KCA CE I
Sbjct: 86 DKFFLSVDGRHWHENCFQCTTCENPLSSKCFYKDMKFYCKTCYFSCREFGPKCASCERLI 145
Query: 140 PPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLD 199
T VRRA++ VYHL CFAC C RQL+TG+E+ L E L+CK + D
Sbjct: 146 QSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEG-NLLCKQHFLELVEGDSGVSS 204
Query: 200 GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259
KR RTT QL L+ +N P E+++ TGL RV QVWFQN RA++
Sbjct: 205 QKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVTQVWFQNSRARQ 264
Query: 260 KR 261
K+
Sbjct: 265 KK 266
>gi|258504166|gb|ACV72777.1| LIM-4 [Caenorhabditis remanei]
gi|258504168|gb|ACV72778.1| LIM-4 [Caenorhabditis remanei]
gi|258504170|gb|ACV72779.1| LIM-4 [Caenorhabditis remanei]
gi|258504174|gb|ACV72781.1| LIM-4 [Caenorhabditis remanei]
gi|258504176|gb|ACV72782.1| LIM-4 [Caenorhabditis remanei]
gi|258504178|gb|ACV72783.1| LIM-4 [Caenorhabditis remanei]
gi|258504180|gb|ACV72784.1| LIM-4 [Caenorhabditis remanei]
gi|258504182|gb|ACV72785.1| LIM-4 [Caenorhabditis remanei]
gi|258504188|gb|ACV72788.1| LIM-4 [Caenorhabditis remanei]
gi|258504190|gb|ACV72789.1| LIM-4 [Caenorhabditis remanei]
Length = 285
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 82 DRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF--KRFGTKCAGCEMGI 139
D+F L V R WH C +C C PL+ KCF ++ +CK +F + FG KCA CE I
Sbjct: 86 DKFFLSVDGRHWHENCFQCTTCENPLSSKCFYKDMKFYCKTCYFSCREFGPKCASCERLI 145
Query: 140 PPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLD 199
T VRRA++ VYHL CFAC C RQL+TG+E+ L E L+CK + D
Sbjct: 146 QSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEG-NLLCKQHFLELVEGDSGVSS 204
Query: 200 GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259
KR RTT QL L+ +N P E+++ TGL RV QVWFQN RA++
Sbjct: 205 QKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVTQVWFQNSRARQ 264
Query: 260 KRL-KKDAGRTRWSQ 273
K+ +K G SQ
Sbjct: 265 KKWHQKSEGDNEDSQ 279
>gi|339247641|ref|XP_003375454.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
gi|316971202|gb|EFV55014.1| LIM/homeobox protein Lhx3 [Trichinella spiralis]
Length = 305
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 117/193 (60%), Gaps = 12/193 (6%)
Query: 80 ILDRFILKVLERTWHARCLKCHECGA--PLAEKCFARNGLLFCKEDFFKRFGTKCAGCEM 137
I DRF+L V WH RCL C CG LA CF R+G + C+ D+ + +G+KCA C +
Sbjct: 3 INDRFMLNVAGNFWHERCLVCSICGLELSLAPSCFLRDGKVLCRGDYLRIYGSKCAKCAL 62
Query: 138 GIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA------- 190
+ P+ V+R+QD ++H+NCF C +C + L GDE Y+ ++ +++C+ D+E+
Sbjct: 63 PLNPSDFVQRSQDRIFHMNCFGCSICGKLLQPGDE-YVRQNEQILCRGDFESLVHNPYED 121
Query: 191 KAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVV 248
K G G KRPRT +T+ Q +T K ++ S KP R VRE L+++TGL +RVV
Sbjct: 122 AFKLGPFRHGHHKKTLKRPRTILTSHQRKTFKASFEVSAKPCRKVREALAKETGLSVRVV 181
Query: 249 QVWFQNRRAKEKR 261
Q+ +R+++ K+
Sbjct: 182 QMKKLHRKSEYKK 194
>gi|195160501|ref|XP_002021114.1| GL25001 [Drosophila persimilis]
gi|194118227|gb|EDW40270.1| GL25001 [Drosophila persimilis]
Length = 458
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 22/246 (8%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF-GT 130
C C I DR+I++V++ ++H CLKC C L C+AR G L+C+ D+ + +
Sbjct: 210 NCAHCCRPISDRYIMRVVDNSFHEGCLKCTACSLHLVHSCYAREGKLYCRIDYERLYIRN 269
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-A 189
+C GC + ++V R + V+HL CFACV+C L G++ Y+++ +L C+ DYE
Sbjct: 270 RCLGCGHKVAADELVMRCHENVFHLKCFACVVCGALLKKGEQ-YVVKQGQLFCRFDYEKE 328
Query: 190 AKAKDG----------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
+ G LDG + KRPRT + +Q + K ++ SPKP R VRE L++
Sbjct: 329 VEMLQGYDYYGDDLFPPKLDGRRGPKRPRTILNTQQRRSFKASFEVSPKPCRKVRENLAK 388
Query: 240 DTGLDMRVVQVWFQNRRAKEKRL---------KKDAGRTRWSQYFRSMKGGTSPKDELKI 290
+TGL +R+VQVWFQN+RAK K++ K A ++ SQ T KDE
Sbjct: 389 ETGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESHDSSLATKIKDEAHS 448
Query: 291 DLDSNF 296
D +S
Sbjct: 449 DSESQM 454
>gi|355567904|gb|EHH24245.1| LIM/homeobox protein LMX1B [Macaca mulatta]
Length = 367
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 110/200 (55%), Gaps = 34/200 (17%)
Query: 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNC 157
L+C C L C+ R+ L+CK+D+ + F KC+GC I PT+ V RA + VYHL C
Sbjct: 46 LQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGC 105
Query: 158 FACVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKD-------- 194
F C +C RQL GDEF L E +L+CK DYE + K++D
Sbjct: 106 FCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPA 164
Query: 195 --------GNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
G+ DG P KRPRT +T +Q K ++ S KP R VRE L+ +TGL
Sbjct: 165 KGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLS 224
Query: 245 MRVVQVWFQNRRAKEKRLKK 264
+RVVQVWFQN+RAK K+L +
Sbjct: 225 VRVVQVWFQNQRAKMKKLAR 244
>gi|308051668|gb|ADO00272.1| LIM homeodomain box protein 3 [Canis lupus familiaris]
Length = 107
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 81/102 (79%), Gaps = 9/102 (8%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
KRPRTTITAKQLETLK AYNTSPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKK
Sbjct: 6 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 65
Query: 265 DAGRTRWSQYFRSMK----GGTSPKDELK-----IDLDSNFS 297
DAGR RW YFRSMK G S KD ++ D D +F+
Sbjct: 66 DAGRQRWGPYFRSMKRARGGPKSDKDSVQEEGQDSDADVSFT 107
>gi|308512521|ref|XP_003118443.1| CRE-LIM-4 protein [Caenorhabditis remanei]
gi|308239089|gb|EFO83041.1| CRE-LIM-4 protein [Caenorhabditis remanei]
Length = 355
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 82 DRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK-----------RFGT 130
D+F L V R WH C +C C PL+ KCF ++ +CK +F+ FG
Sbjct: 107 DKFFLSVDGRHWHENCFQCTTCENPLSSKCFYKDMKFYCKTCYFRTHVTTTASSCREFGP 166
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
KCA CE I T VRRA++ VYHL CFAC C RQL+TG+E+ L E L+CK +
Sbjct: 167 KCASCERLIQSTDWVRRARNYVYHLACFACNQCKRQLSTGEEYALQEG-NLLCKQHFLEL 225
Query: 191 KAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQV 250
D KR RTT QL L+ +N P E+++ TGL RV QV
Sbjct: 226 VEGDSGVSSQKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVTQV 285
Query: 251 WFQNRRAKEKRL-KKDAGRTRWSQYFRSMKGGTSP 284
WFQN RA++K+ +K G SQ RS G SP
Sbjct: 286 WFQNSRARQKKWHQKSEGDNEDSQ--RSSVGPLSP 318
>gi|82524343|ref|NP_001032320.1| LIM/homeobox protein Lhx9 isoform 2 [Danio rerio]
gi|76667071|dbj|BAE45355.1| LIM homeodomain type transcription factor Lhx9 [Danio rerio]
Length = 395
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 143/310 (46%), Gaps = 71/310 (22%)
Query: 27 GICASKLHDLLHEAH--AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRF 84
GI + ++ E + S S + + E MP P C GCG I DR+
Sbjct: 24 GISGDHIEGIMAEMERRSKSESRLAKTVQMNGRETTMPSMSP-EKPALCAGCGGKISDRY 82
Query: 85 ILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPP 141
L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 83 YLHAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCAHCHLGISA 142
Query: 142 TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE------------- 188
+++V RA+D VYHL+CF C C + L TGD F M+D + C+ +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDNLVYCRVHFETLIQGEYHPQLNY 201
Query: 189 ---AAKA---------------------------------------KDGNCLDGD----- 201
AAKA D + LD D
Sbjct: 202 AELAAKAGGLALPYFNGTGTRKGRPRKRKSPAMGIDIGSYSSGCNENDADHLDRDQQPYP 261
Query: 202 --QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK
Sbjct: 262 PSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 321
Query: 260 KR--LKKDAG 267
+R L+++ G
Sbjct: 322 RRNVLRQENG 331
>gi|258504172|gb|ACV72780.1| LIM-4 [Caenorhabditis remanei]
Length = 285
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 99/182 (54%), Gaps = 3/182 (1%)
Query: 82 DRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF--KRFGTKCAGCEMGI 139
D+F L V R WH C +C C PL+ KCF ++ +CK +F + FG KCA CE I
Sbjct: 86 DKFFLSVDGRHWHENCFQCTTCENPLSSKCFYKDMKFYCKTCYFSCREFGPKCASCERLI 145
Query: 140 PPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLD 199
T VRRA+ VYHL CFAC C RQL+TG+E+ L E L+CK + D
Sbjct: 146 QSTDWVRRARSYVYHLACFACNQCKRQLSTGEEYALQEG-NLLCKQHFLELVEGDSGVSS 204
Query: 200 GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259
KR RTT QL L+ +N P E+++ TGL RV QVWFQN RA++
Sbjct: 205 QKAKTKRVRTTFADDQLSVLQTYFNRDSNPDGADLEKIATMTGLSKRVTQVWFQNSRARQ 264
Query: 260 KR 261
K+
Sbjct: 265 KK 266
>gi|391340116|ref|XP_003744391.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Metaseiulus
occidentalis]
Length = 460
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 120/233 (51%), Gaps = 43/233 (18%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG I D++IL+V + WHA CLKC EC L E C F R G +CK D+ +
Sbjct: 101 ISLCVGCGSQIQDQYILRVSPDLEWHASCLKCVECLQFLDESCTCFVREGKTYCKSDYHR 160
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FG KC+ C + + V RA+ ++H++CF C+ C+RQL GDEF + ED +L CK D
Sbjct: 161 LFGAKCSKCGLSFSRSDFVMRARGKIFHIDCFRCIACSRQLIPGDEFAIRED-ELFCKAD 219
Query: 187 YEAAKAKDGNCL--------------------------------------DGDQPNKRPR 208
++ + GN L G+ R R
Sbjct: 220 HDVLGPR-GNGLPSLGGNGAGGGGGGPGGGGGGGSAGGGSVRSQGHKGGRGGEHKPTRVR 278
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
T + KQL TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 279 TVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 331
>gi|156390719|ref|XP_001635417.1| predicted protein [Nematostella vectensis]
gi|156222511|gb|EDO43354.1| predicted protein [Nematostella vectensis]
Length = 253
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 43/231 (18%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG IL+RF L +++ WHA CLKC +C L + CF+++G++ C+ED+++RF
Sbjct: 9 CAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRRFSV 68
Query: 131 K-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
K C+ C I ++V RA+D VYH+NCFAC C R L TG E++ M ++ CK DYE
Sbjct: 69 KKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATG-EYFGMRGIRIYCKEDYEE 127
Query: 190 AKAKDG------NCLDGDQPN---------------------------------KRPRTT 210
++ N L +P KR RT+
Sbjct: 128 LLREESRNPTKINSLSKGRPRKRRIATAIESITNLGYDLSDRPGELTTGADGRPKRVRTS 187
Query: 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL +K + + P +QLSQ TGL RV+QVWFQN RAK +R
Sbjct: 188 FKHHQLRAMKTYFAMNHNPDAKDLKQLSQKTGLTKRVLQVWFQNARAKFRR 238
>gi|56694840|gb|AAW23082.1| Islet [Oikopleura dioica]
Length = 381
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 117/200 (58%), Gaps = 12/200 (6%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKRFG 129
C C I D F +V + ++H CLKC ECG A CF +N L +CKED+ + +
Sbjct: 44 CHSCRGKIDDAFSWQVHPDYSFHPHCLKCSECGCYFQDATSCFMKNELAYCKEDYERLYM 103
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP---- 185
CA C+ + PT +V + ++ +H++CF+C C R L +GDEF L+E R L C+P
Sbjct: 104 EHCAKCDHALQPTDLVHKVKNCTFHVDCFSCSSCVRVLVSGDEFLLIETR-LFCRPCHEL 162
Query: 186 DYEAAKAKDGNCLDGDQPNK----RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT 241
+ E ++ C + ++ NK R RT + KQL TL+ Y +P+P ++EQL + T
Sbjct: 163 ESEQSRQNQFRCREMERRNKPKTTRVRTVLNEKQLHTLRTCYQANPRPDALMKEQLVEMT 222
Query: 242 GLDMRVVQVWFQNRRAKEKR 261
GL RV++VWFQN+R K+K+
Sbjct: 223 GLSPRVIRVWFQNKRCKDKK 242
>gi|158299279|ref|XP_319393.4| AGAP010209-PA [Anopheles gambiae str. PEST]
gi|157014289|gb|EAA13793.5| AGAP010209-PA [Anopheles gambiae str. PEST]
Length = 451
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 115/246 (46%), Gaps = 57/246 (23%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 56 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFG 115
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC C V RA+ +YH+ CF C CARQL GDEF L + L CK D++
Sbjct: 116 TKCDKCGSSFSKNDFVMRAKTKIYHIECFRCSACARQLIPGDEFALRDGGSLYCKEDHDH 175
Query: 190 AKAKDGNCL-------------DGDQPNKRP----------------------------- 207
+ N L + NKR
Sbjct: 176 LEKSSQNGLVQGAGKQERRIQKNNKHTNKRQSSPSNANVVHVNQNSGSESGSHKSLRGKG 235
Query: 208 ------------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNR 255
RT + KQL TL+ YN +P+P ++EQL + TGL RV++VWFQN+
Sbjct: 236 PSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNK 295
Query: 256 RAKEKR 261
R K+K+
Sbjct: 296 RCKDKK 301
>gi|410921836|ref|XP_003974389.1| PREDICTED: LIM/homeobox protein Lhx9-like [Takifugu rubripes]
Length = 506
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 130/279 (46%), Gaps = 71/279 (25%)
Query: 58 EGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARN 115
E MP P C GCG I DR+ L +++ WH RCLKC EC L + CFA++
Sbjct: 166 ESTMPSMSP-EKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKD 224
Query: 116 GLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFY 174
G ++CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F
Sbjct: 225 GSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG 284
Query: 175 LMEDRKLVCK---------PDYEAA----------------------------------- 190
M+D + C+ PDY A
Sbjct: 285 -MKDSLVYCRLHFETLVQGPDYHAQLNFAELAAKGGGLSLPYFNGTGTAQKGRPRKRKSP 343
Query: 191 -------------KAKDGNCLDGD-------QPNKRPRTTITAKQLETLKMAYNTSPKPA 230
D + LD D Q KR RT+ QL T+K + + P
Sbjct: 344 AMGIDISSYNTGCNENDTDHLDRDQQAYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPD 403
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
+QL+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 404 AKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNILRQENG 442
>gi|170577993|ref|XP_001894217.1| Homeobox domain containing protein [Brugia malayi]
gi|158599257|gb|EDP36927.1| Homeobox domain containing protein [Brugia malayi]
Length = 452
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 104/194 (53%), Gaps = 20/194 (10%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
+ C C + ILDR +L V R WH CLKC +C L + RFG
Sbjct: 217 VEICSSCSEFILDRTLLTVNSRFWHINCLKCSQCSTLLEQ-----------------RFG 259
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC+ C+ I T VRRA++ VYHL CFAC C RQL+TG+EF L +D +L+CK Y
Sbjct: 260 TKCSSCQRLIHATDWVRRARNFVYHLACFACDQCKRQLSTGEEFAL-QDCRLLCKQHY-- 316
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
+ +G C KR RTT +QL L+ + P E+++ TGL RV Q
Sbjct: 317 MELIEGECGQQKAKTKRVRTTFAEEQLAVLQTHFQIDSNPDGADLERIATMTGLSKRVTQ 376
Query: 250 VWFQNRRAKEKRLK 263
VWFQN RA++K+ +
Sbjct: 377 VWFQNSRARQKKYQ 390
>gi|350579610|ref|XP_003480648.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like [Sus
scrofa]
Length = 332
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 117/205 (57%), Gaps = 20/205 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++ +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQ 269
Query: 226 SPKPARHVREQLSQDTGLDMRVVQV 250
P ++L+ TGL RV+QV
Sbjct: 270 VNNPDAQTLQKLADMTGLSRRVLQV 294
>gi|29500723|gb|AAO74860.1| LMX1B [Canis lupus familiaris]
Length = 309
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 108/198 (54%), Gaps = 34/198 (17%)
Query: 100 CHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFA 159
C C L C+ R+ L+CK+D+ + F KC+GC I PT+ V RA + VYHL CF
Sbjct: 1 CAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFC 60
Query: 160 CVMCARQLNTGDEFYLMEDRKLVCKPDYE---------------AAKAKD---------- 194
C +C RQL GDEF L E +L+CK DYE + K++D
Sbjct: 61 CCVCERQLRKGDEFVLKEG-QLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKG 119
Query: 195 ------GNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
G+ DG P KRPRT +T +Q K ++ S KP R VRE L+ +TGL +R
Sbjct: 120 QGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVR 179
Query: 247 VVQVWFQNRRAKEKRLKK 264
VVQVWFQN+RAK K+L +
Sbjct: 180 VVQVWFQNQRAKMKKLAR 197
>gi|371573882|gb|AEX38311.1| islet [Mnemiopsis leidyi]
Length = 321
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 111/203 (54%), Gaps = 21/203 (10%)
Query: 73 CGGCGDLILDRFILKVLER-TWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GC I D+FIL+V WHA CLKC +C L E C F R G +CK+DF RFG
Sbjct: 11 CAGCRCPITDQFILRVAPNLEWHASCLKCDDCNKFLDENCTCFIREGKPYCKKDFV-RFG 69
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC------ 183
KC C+ G V R ++ ++HL+CF C MC+RQL G+EF L+ + L+C
Sbjct: 70 AKCHRCDQGFSSNDFVMRVRENIFHLSCFRCNMCSRQLVPGEEFALLPE-GLICGTHIKQ 128
Query: 184 ----------KPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
+P E+ G+Q R RT + +QL L+ YN +P+P +
Sbjct: 129 QHHQQAPLPNEPLPESKPRSTNTGSSGEQKTTRVRTVLNDRQLRILRTCYNNNPRPDALM 188
Query: 234 REQLSQDTGLDMRVVQVWFQNRR 256
+EQ+++ TGL RV++VWFQN+R
Sbjct: 189 KEQMTKLTGLSARVIRVWFQNKR 211
>gi|348536381|ref|XP_003455675.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Oreochromis
niloticus]
Length = 399
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 132/279 (47%), Gaps = 71/279 (25%)
Query: 58 EGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARN 115
E MP P C GCG I DR+ L +++ WH RCLKC EC L + CFA++
Sbjct: 59 ESTMPSMSP-EKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKD 117
Query: 116 GLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFY 174
G ++CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F
Sbjct: 118 GSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG 177
Query: 175 LMEDRKLVCK---------PDYE--------AAKA------------------------- 192
M+D + C+ PDY AAK
Sbjct: 178 -MKDSLVYCRLHFETLVQGPDYHPQLNFAELAAKGGGLTLPYFNGTGTAQKGRPRKRKSP 236
Query: 193 ---------------KDGNCLDGD-------QPNKRPRTTITAKQLETLKMAYNTSPKPA 230
D + LD D Q KR RT+ QL T+K + + P
Sbjct: 237 AMGIDIPSYNTGCNENDTDHLDRDQQAYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPD 296
Query: 231 RHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
+QL+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 297 AKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNVLRQENG 335
>gi|110748616|gb|ABG89861.1| Lhx6, partial [Astyanax mexicanus]
Length = 303
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 111/195 (56%), Gaps = 20/195 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L + C+ +N +FCK D+F RFGT
Sbjct: 110 CASCGLEILDRYLLKVNNLIWHXRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFSRFGT 169
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 170 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 228
Query: 189 ------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHV 233
AA++ G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 229 VENLKRAAESGSGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQT 288
Query: 234 REQLSQDTGLDMRVV 248
++L+ TGL RV+
Sbjct: 289 LQKLADMTGLSRRVI 303
>gi|432854590|ref|XP_004067976.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Oryzias latipes]
Length = 378
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 128/264 (48%), Gaps = 70/264 (26%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 111
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK----- 184
+CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D + C+
Sbjct: 112 QRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDSLVYCRLHFET 170
Query: 185 ----PDYE--------AAKA---------------------------------------- 192
PDY AAK
Sbjct: 171 LVQGPDYHPQLNFAELAAKGGGLALPYFNGTGTTQKGRPRKRKSPAMGIDIPSYNTGCNE 230
Query: 193 KDGNCLDGD-------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDM 245
D + LD D Q KR RT+ QL T+K + + P +QL+Q TGL
Sbjct: 231 NDTDHLDRDQQAYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTK 290
Query: 246 RVVQVWFQNRRAKEKR--LKKDAG 267
RV+QVWFQN RAK +R L+++ G
Sbjct: 291 RVLQVWFQNARAKFRRNVLRQENG 314
>gi|332229915|ref|XP_003264132.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Nomascus
leucogenys]
Length = 365
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 21/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 140 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 198
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ + +
Sbjct: 199 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQ-VPLQTAI 257
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P +R S L QVWFQN RA+ K+
Sbjct: 258 PPGVSRRRVRLFSARLRLPRLSFQVWFQNCRARHKK 293
>gi|432854592|ref|XP_004067977.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Oryzias latipes]
Length = 380
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 128/266 (48%), Gaps = 72/266 (27%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 111
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK----- 184
+CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D + C+
Sbjct: 112 QRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDSLVYCRLHFET 170
Query: 185 ----PDYE--------AAKA---------------------------------------- 192
PDY AAK
Sbjct: 171 LVQGPDYHPQLNFAELAAKGGGLALPYFNGTGTTQKGRPRKRKSPAMGIDIPSYNTALRC 230
Query: 193 --KDGNCLDGD-------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
D + LD D Q KR RT+ QL T+K + + P +QL+Q TGL
Sbjct: 231 NENDTDHLDRDQQAYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGL 290
Query: 244 DMRVVQVWFQNRRAKEKR--LKKDAG 267
RV+QVWFQN RAK +R L+++ G
Sbjct: 291 TKRVLQVWFQNARAKFRRNVLRQENG 316
>gi|324540769|gb|ADY49599.1| Protein lin-11, partial [Ascaris suum]
Length = 141
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 86/117 (73%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
CGGC ILDR++ VL++TWHA C++C +C PL E CF+R+GL+ C++DF +RFGT+C
Sbjct: 4 CGGCNTAILDRYVFHVLDKTWHASCIQCADCKEPLTETCFSRDGLILCRQDFSRRFGTRC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
AGC + + +VRRA+D V+H+ CF C +C ++L+TG++ Y++ + VCK DY A
Sbjct: 64 AGCNVALDRNDLVRRARDKVFHVQCFQCTVCQKKLDTGEQLYILNGNRFVCKHDYLA 120
>gi|332229917|ref|XP_003264133.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Nomascus
leucogenys]
Length = 376
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 21/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ + +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQ-VPLQTAI 268
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P +R S L QVWFQN RA+ K+
Sbjct: 269 PPGVSRRRVRLFSARLRLPRLSFQVWFQNCRARHKK 304
>gi|194758653|ref|XP_001961576.1| GF14867 [Drosophila ananassae]
gi|190615273|gb|EDV30797.1| GF14867 [Drosophila ananassae]
Length = 550
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 115/248 (46%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 53 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 112
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 113 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 172
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQPN--- 204
+ E D G +
Sbjct: 173 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRE 232
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + TGL RV++VWFQ
Sbjct: 233 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQ 292
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 293 NKRCKDKK 300
>gi|1708562|sp|P53410.1|ISL2_CHICK RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531181|gb|AAA62172.1| sequence encoding 37 predicted 5' amino acids has not been
determined, partial [Gallus gallus]
Length = 319
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 109/210 (51%), Gaps = 35/210 (16%)
Query: 84 FILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFGTKCAGCEMGIP 140
F+L+V + WH CLKC ECG PL E C F R+G +CK D+ + FG KCA C
Sbjct: 1 FLLRVSPDLEWHVACLKCAECGQPLDETCTCFLRDGKAYCKRDYGRLFGIKCAQCRAAFS 60
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDG 200
+ +V RA+D VYHL CF C C RQL GD+F L E R L+C+ D+ DG G
Sbjct: 61 SSDLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRE-RDLLCRADH--GPPPDGAAARG 117
Query: 201 DQPNKRP-----------------------------RTTITAKQLETLKMAYNTSPKPAR 231
+ P RT + KQL TL+ Y +P+P
Sbjct: 118 PRSPAPPPAHLAEPVPGRPPGPRPQSHKAAEKTTRVRTVLNEKQLHTLRTCYAANPRPDA 177
Query: 232 HVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 178 LMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 207
>gi|332229919|ref|XP_003264134.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Nomascus
leucogenys]
Length = 391
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 21/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 91 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 150
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 151 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 209
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ + +
Sbjct: 210 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQ-VPLQTAI 268
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P +R S L QVWFQN RA+ K+
Sbjct: 269 PPGVSRRRVRLFSARLRLPRLSFQVWFQNCRARHKK 304
>gi|195386470|ref|XP_002051927.1| GJ24442 [Drosophila virilis]
gi|194148384|gb|EDW64082.1| GJ24442 [Drosophila virilis]
Length = 529
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 115/248 (46%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 51 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 110
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 111 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQPN--- 204
+ E D G +
Sbjct: 171 HDVLEKSSQSSLTSSSVESNNNISSNNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRE 230
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + TGL RV++VWFQ
Sbjct: 231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQ 290
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 291 NKRCKDKK 298
>gi|405976917|gb|EKC41395.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 280
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 108/195 (55%), Gaps = 8/195 (4%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGT 130
C GC ++I DR+ L V WH CL+C C + L E CF ++ ++C+ D+ FGT
Sbjct: 52 CEGCQEVIADRYFLHVNGACWHTDCLRCCVCCSSLEQEESCFVKDENIYCRRDYISEFGT 111
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY--- 187
KC+ C I T VRRA++ VYHL CFAC C RQL+TG+EF L D +L+C Y
Sbjct: 112 KCSKCYRKIQATDWVRRARENVYHLACFACDSCQRQLSTGEEFALSGD-QLLCLRHYTSL 170
Query: 188 -EAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
E KD L KR R++ T +QL+ L+ + P +++ G+ R
Sbjct: 171 VEGDTDKDSE-LSSKPKAKRVRSSFTEEQLQILQANFRIESNPDSQELNRIAITAGVSRR 229
Query: 247 VVQVWFQNRRAKEKR 261
V QVWFQN RA++K+
Sbjct: 230 VAQVWFQNARARQKK 244
>gi|195114382|ref|XP_002001746.1| GI17017 [Drosophila mojavensis]
gi|193912321|gb|EDW11188.1| GI17017 [Drosophila mojavensis]
Length = 533
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 114/245 (46%), Gaps = 56/245 (22%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 62 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFG 121
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
TKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D+
Sbjct: 122 TKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDV 181
Query: 188 -------------------------------------EAAKAKDGNCLDGDQP---NKRP 207
E D G +KRP
Sbjct: 182 LEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRDKRP 241
Query: 208 -----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
RT + KQL TL+ YN +P+P ++EQL + TGL RV++VWFQN+R
Sbjct: 242 SGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 301
Query: 257 AKEKR 261
K+K+
Sbjct: 302 CKDKK 306
>gi|209489337|gb|ACI49110.1| hypothetical protein Cbre_JD13.012 [Caenorhabditis brenneri]
Length = 369
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 105/182 (57%), Gaps = 44/182 (24%)
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+R+G +CAGC+ + +VRRA+D V+H+ CF C +C R L+TGD+ Y+ME + +C+
Sbjct: 85 RRYGHRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQN 144
Query: 186 DYEAAK------------------------------------------AKDGNCLDGDQP 203
D++ A KD N D +
Sbjct: 145 DFQTATKTSTPTSMHRPVSNGSECNSDMEEDNVDACDDVGLDDVDGDCGKD-NSDDSNSA 203
Query: 204 NKR-PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
+R PRTTI AKQLETLK A+ +PKP RH+REQL+ +TGL+MRV+QVWFQNRR+KE+R+
Sbjct: 204 KRRGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRM 263
Query: 263 KK 264
K+
Sbjct: 264 KQ 265
>gi|196000228|ref|XP_002109982.1| hypothetical protein TRIADDRAFT_14836 [Trichoplax adhaerens]
gi|190588106|gb|EDV28148.1| hypothetical protein TRIADDRAFT_14836, partial [Trichoplax
adhaerens]
Length = 215
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 116/214 (54%), Gaps = 26/214 (12%)
Query: 73 CGGCGDLILDRFILKV--LERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRF 128
C GCG I+D+ L + ++ WH +CL+C++C PL + C+ + G +FC+ D+F RF
Sbjct: 1 CAGCGRSIMDQEYLGIQKTDKKWHIQCLRCYDCNEPLDKDQSCYVKQGNIFCRTDYFNRF 60
Query: 129 GT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
G+ KC C GI P + V +A++ YH +CF C C R L TG+EF M KL CK +
Sbjct: 61 GSIKCPTCNSGISPKEHVMKAREYAYHCSCFICHTCNRLLKTGEEF-AMRGCKLYCKEHF 119
Query: 188 EAAKA---------KDGNCLDGDQPN-----------KRPRTTITAKQLETLKMAYNTSP 227
++ + KD + + D N KR RT+ QL T+K + +
Sbjct: 120 QSITSDHRHSHHSNKDNSGENHDSSNSNDITDEHGRSKRIRTSFKQPQLRTMKTYFALNH 179
Query: 228 KPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P +QLS TGL+ RV+QVWFQN RAK +R
Sbjct: 180 NPDSKDLKQLSIKTGLNKRVLQVWFQNARAKYRR 213
>gi|431921900|gb|ELK19103.1| LIM/homeobox protein Lhx9 [Pteropus alecto]
Length = 479
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 125/263 (47%), Gaps = 69/263 (26%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF
Sbjct: 153 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 212
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP---- 185
+CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D + C+
Sbjct: 213 QRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKDSLVYCRAHFET 271
Query: 186 ----------DYEAAKAKDGNC-------------------------------------- 197
Y AK G
Sbjct: 272 LLQGEYPPQLSYTELAAKSGGLALPYFNGAGTVQKGRPRKRKSPALGVDIVNYSSGCNEN 331
Query: 198 ----LDGDQP-------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
LD DQP KR RT+ QL T+K + + P +QL+Q TGL R
Sbjct: 332 EAEHLDRDQPPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKR 391
Query: 247 VVQVWFQNRRAKEKR--LKKDAG 267
V+QVWFQN RAK +R L+++ G
Sbjct: 392 VLQVWFQNARAKFRRNLLRQENG 414
>gi|47217395|emb|CAG00755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 125/267 (46%), Gaps = 71/267 (26%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 1 MPSMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 60
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 61 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKD 119
Query: 179 RKLVCK---------PDYEA---------------------------------------- 189
+ C+ PDY A
Sbjct: 120 SLVYCRLHFESLVQGPDYHAQLNFAELAAKGGGLPLPYFNGTGTAQKGRPRKRKSPAMGI 179
Query: 190 --------AKAKDGNCLDGD-------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
D + LD D Q KR RT+ QL T+K + + P
Sbjct: 180 DISGYSTGCNENDTDHLDRDQQAYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDL 239
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 240 KQLAQKTGLTKRVLQVWFQNARAKFRR 266
>gi|340377757|ref|XP_003387395.1| PREDICTED: LIM/homeobox protein Lhx5-like [Amphimedon
queenslandica]
Length = 272
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 86/117 (73%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC + I++RF++KVL+++WH +C+KC +C L+EKCF+R+ L+C+ DFF+++GT+C
Sbjct: 6 CAGCSEPIMERFLMKVLDKSWHVQCVKCSDCQCLLSEKCFSRDNKLYCRSDFFRQYGTQC 65
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
A C+ G+ P +VRR + +YH+ CF C +C RQLNTG++ YL++ K +C Y A
Sbjct: 66 ASCKEGLCPEDLVRRGVNKIYHVQCFKCSVCQRQLNTGEQLYLVQGEKFLCDSCYPA 122
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 200 GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259
GD + RT+I KQL L+ Y P+P+R +RE L+ TGL +V+QVWFQNRR+K+
Sbjct: 200 GDNRKGKTRTSINPKQLIVLQATYEKEPRPSRAMREDLAAQTGLTAKVIQVWFQNRRSKD 259
Query: 260 KR 261
K+
Sbjct: 260 KK 261
>gi|444730493|gb|ELW70875.1| LIM/homeobox protein Lhx4 [Tupaia chinensis]
Length = 768
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 121/248 (48%), Gaps = 44/248 (17%)
Query: 72 KCGGCGDLILD-RFILKVLERTWHARCLKCHECGAPLA---EKCFARNGLLFCKEDF--- 124
KC C I + + K + +H C C C LA E +G L CKED+
Sbjct: 367 KCTACQQGIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCKEDYETA 426
Query: 125 --------FKRFGT-----KCAGCEM--------------------GIPPTQVVRRAQDL 151
+ +G C+GC + PP R +L
Sbjct: 427 KQNDWAVEGRGWGADSWCWSCSGCRLRDEEEGPLATQGDSAQPCNFSGPPGPYSRLQWEL 486
Query: 152 VYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTI 211
V +R N + ++ + A +A+D D + KRPRTTI
Sbjct: 487 CTGQAGIRPVFSSRTRNPAGPLSMPVEQPCSFQRLDGAQQAQD----DSEAGAKRPRTTI 542
Query: 212 TAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRW 271
TAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAGR RW
Sbjct: 543 TAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRW 602
Query: 272 SQYFRSMK 279
Q+++S+K
Sbjct: 603 GQFYKSVK 610
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 57/68 (83%)
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKC C+ GIPPTQVVR+AQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK D
Sbjct: 363 RFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCKED 422
Query: 187 YEAAKAKD 194
YE AK D
Sbjct: 423 YETAKQND 430
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126
A IP+C GC ILD+FILKVL+R WH+ CLKC +C LA++CF+R G ++CKEDFFK
Sbjct: 147 AEIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK 205
>gi|296194639|ref|XP_002745038.1| PREDICTED: insulin gene enhancer protein ISL-1 [Callithrix jacchus]
Length = 348
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 117/226 (51%), Gaps = 36/226 (15%)
Query: 70 IPKCGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
I C GCG+ I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 14 ISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
+G KCA +G V RA+ VYH+ CF CV A + GDEF L ED L C+ D
Sbjct: 74 LYGIKCAXXSIGFSKNDFVMRARSKVYHIECFRCVAAA-PAHPGDEFALRED-GLFCRAD 131
Query: 187 Y---EAAKAKDGNCL----------------DGDQPNKRP------------RTTITAKQ 215
+ E A G+ L QP RP RT + KQ
Sbjct: 132 HDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQ 191
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 192 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 237
>gi|70887599|ref|NP_001020669.1| LIM homeobox transcription factor 1, alpha [Danio rerio]
Length = 366
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 115/219 (52%), Gaps = 30/219 (13%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC +LI DR++L+V + WH RCL C C PL + CF RN L+CK D+ K F +C
Sbjct: 26 CEGCNELIRDRYLLRVQDGLWHERCLHCASCREPLKDTCFLRNKTLYCKRDYQKLFVVRC 85
Query: 133 AGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--- 188
GC I P+++V RAQ V+HL CF C +C +L GD L D L C +
Sbjct: 86 QGCSEIISPSELVMRAQGSAVFHLRCFCCCVCGCRLQKGDHCVLRGD-GLFCATHFHNQL 144
Query: 189 ----------------------AAKAKDGNCLDGDQPN---KRPRTTITAKQLETLKMAY 223
K + + GD + KRPRT +T +Q K ++
Sbjct: 145 ASPTSSDSGKSEDIEEDNDDEDNLKTAGESNITGDVEHKRPKRPRTILTTQQRRAFKASF 204
Query: 224 NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 205 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 243
>gi|268576445|ref|XP_002643202.1| C. briggsae CBR-LIM-6 protein [Caenorhabditis briggsae]
Length = 257
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 109/191 (57%), Gaps = 13/191 (6%)
Query: 89 LERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVR 146
++ ++H CL+C+ C L+ +KCF+R+G ++C+ D FG +C C + T +V
Sbjct: 1 MDESYHETCLRCYCCQLSLSSLKKCFSRHGNIYCEHDHQMLFGKRCRRCMTVLSSTDIVH 60
Query: 147 RAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA----AKAKDGNCLDGDQ 202
R + YH CF C C N GDE+++ D ++ C+ DY+A + + D Q
Sbjct: 61 RVHYMYYHAQCFNCCSCQGPFNLGDEYHVF-DGEVFCRNDYQAMCDFGTSSESMLDDAVQ 119
Query: 203 PN------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
KRPRT + A+Q K A+ S KP+R VREQL+ +TGL +RVVQVWFQN+R
Sbjct: 120 SEIHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANETGLSVRVVQVWFQNQR 179
Query: 257 AKEKRLKKDAG 267
AK K++ K G
Sbjct: 180 AKIKKMNKKDG 190
>gi|426362929|ref|XP_004048602.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Gorilla gorilla
gorilla]
Length = 369
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 21/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 84 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 143
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 144 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 202
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ + +
Sbjct: 203 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQ-VPLQAAV 261
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P +R S L QVWFQN RA+ K+
Sbjct: 262 PPGVSRRRVRLFSSRLRLLRLSFQVWFQNCRARHKK 297
>gi|426362927|ref|XP_004048601.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Gorilla gorilla
gorilla]
Length = 384
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 21/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 84 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 143
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 144 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 202
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ + +
Sbjct: 203 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQ-VPLQAAV 261
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P +R S L QVWFQN RA+ K+
Sbjct: 262 PPGVSRRRVRLFSSRLRLLRLSFQVWFQNCRARHKK 297
>gi|225709660|gb|ACO10676.1| LIM/homeobox protein Awh [Caligus rogercresseyi]
Length = 274
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 19/206 (9%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I D++IL+V ++WH+ CL+C C L CF ++ LLFCK D+ + FG+
Sbjct: 25 CSDCGAGITDQYILQVAGQSWHSSCLRCSVCQEILDSHSSCFIKDDLLFCKLDYARAFGS 84
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
KC C I P+ VR+A++ +YHL CF+C C RQL+TG+EF + EDR ++CK +
Sbjct: 85 KCFKCSRNISPSDWVRKAREQIYHLACFSCDGCKRQLSTGEEFGIFEDR-VLCKCHF--L 141
Query: 191 KAKDG--------------NCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ +DG + +KR RTT T Q++ L+ ++ P E+
Sbjct: 142 ELRDGILSSSDESGESSETGGGGSKKKSKRMRTTFTEDQIQILQANFHIDSNPDGQDLER 201
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRL 262
++ TGL RV QVWFQN RA++K+
Sbjct: 202 IAGITGLSKRVTQVWFQNCRARQKKF 227
>gi|198473929|ref|XP_001356494.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
gi|198138172|gb|EAL33558.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
Length = 548
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 51 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 110
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 111 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQPN--- 204
+ E D G +
Sbjct: 171 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRE 230
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQ
Sbjct: 231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQ 290
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 291 NKRCKDKK 298
>gi|195147414|ref|XP_002014675.1| GL18825 [Drosophila persimilis]
gi|194106628|gb|EDW28671.1| GL18825 [Drosophila persimilis]
Length = 550
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 51 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 110
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 111 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQPN--- 204
+ E D G +
Sbjct: 171 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRE 230
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQ
Sbjct: 231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQ 290
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 291 NKRCKDKK 298
>gi|1895062|gb|AAB49892.1| LIM homeobox protein [Drosophila melanogaster]
Length = 534
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 51 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 110
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 111 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQP---N 204
+ E D G +
Sbjct: 171 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRD 230
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQ
Sbjct: 231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQ 290
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 291 NKRCKDKK 298
>gi|17136568|ref|NP_476775.1| tailup, isoform A [Drosophila melanogaster]
gi|195580000|ref|XP_002079844.1| GD21801 [Drosophila simulans]
gi|7298500|gb|AAF53720.1| tailup, isoform A [Drosophila melanogaster]
gi|194191853|gb|EDX05429.1| GD21801 [Drosophila simulans]
Length = 534
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 51 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 110
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 111 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQP---N 204
+ E D G +
Sbjct: 171 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRD 230
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQ
Sbjct: 231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQ 290
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 291 NKRCKDKK 298
>gi|195344936|ref|XP_002039032.1| GM17053 [Drosophila sechellia]
gi|194134162|gb|EDW55678.1| GM17053 [Drosophila sechellia]
Length = 534
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 51 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 110
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 111 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQP---N 204
+ E D G +
Sbjct: 171 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRD 230
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQ
Sbjct: 231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQ 290
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 291 NKRCKDKK 298
>gi|355567465|gb|EHH23806.1| hypothetical protein EGK_07356 [Macaca mulatta]
Length = 363
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 114/216 (52%), Gaps = 20/216 (9%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNT 225
C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+
Sbjct: 181 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVPXXXXXX 240
Query: 226 SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
S L QVWFQN RA+ K+
Sbjct: 241 XXXXXXXXVRLFSARLRLPRLSFQVWFQNCRARHKK 276
>gi|260794981|ref|XP_002592485.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277705|gb|EEN48496.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 452
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 126/281 (44%), Gaps = 69/281 (24%)
Query: 50 SSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE 109
SS ++ MPV P C GCG I+DR+ L +++ WH CLKC EC L
Sbjct: 37 SSGPSAEHGRAMPVVHPEEKPGVCAGCGGRIVDRYYLLAVDKQWHLHCLKCCECKLRLES 96
Query: 110 K--CFARNGLLFCKEDFFKRFGTK-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQ 166
+ CFA++G ++CK+D+++RF K CA C +GI +++V RA+DLV+HLNCF C C R
Sbjct: 97 ELTCFAKDGSIYCKQDYYRRFSVKRCARCHLGISASEMVMRARDLVFHLNCFMCETCNRP 156
Query: 167 LNTG-------DEFYLMEDRKLV-------------CKP--------------------- 185
L TG D Y D + + C P
Sbjct: 157 LTTGDQYGMRGDTVYCRYDYETLVHGEASHLPLGAACSPPQTPTSPTGAQFYNGVGAIHK 216
Query: 186 -------------------DYEAAKAKDGNCLDGDQPNKRP------RTTITAKQLETLK 220
D + + DG G+ P +P RT+ QL +K
Sbjct: 217 GRPRKRKSPEPNGYMQGDNDSDTSSHNDGYQQGGNSPGHQPQRQKRMRTSFKHHQLRAMK 276
Query: 221 MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+ + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 277 SYFALNHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKYRR 317
>gi|195433046|ref|XP_002064526.1| GK23894 [Drosophila willistoni]
gi|194160611|gb|EDW75512.1| GK23894 [Drosophila willistoni]
Length = 539
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 49 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 108
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 109 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 168
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQPN--- 204
+ E D G +
Sbjct: 169 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRE 228
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQ
Sbjct: 229 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQ 288
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 289 NKRCKDKK 296
>gi|194879942|ref|XP_001974333.1| GG21675 [Drosophila erecta]
gi|190657520|gb|EDV54733.1| GG21675 [Drosophila erecta]
Length = 534
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 113/245 (46%), Gaps = 56/245 (22%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFG 113
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
TKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D+
Sbjct: 114 TKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDV 173
Query: 188 -------------------------------------EAAKAKDGNCLDGDQP---NKRP 207
E D G +KRP
Sbjct: 174 LEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRDKRP 233
Query: 208 -----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQN+R
Sbjct: 234 SGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKR 293
Query: 257 AKEKR 261
K+K+
Sbjct: 294 CKDKK 298
>gi|17136566|ref|NP_476774.1| tailup, isoform B [Drosophila melanogaster]
gi|5052638|gb|AAD38649.1|AF145674_1 tailup [Drosophila melanogaster]
gi|22946785|gb|AAN11018.1| tailup, isoform B [Drosophila melanogaster]
gi|220942306|gb|ACL83696.1| tup-PB [synthetic construct]
gi|220952524|gb|ACL88805.1| tup-PB [synthetic construct]
Length = 465
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 114/248 (45%), Gaps = 56/248 (22%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 51 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 110
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 111 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKED 170
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQP---N 204
+ E D G +
Sbjct: 171 HDVLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRD 230
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
KRP RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQ
Sbjct: 231 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQ 290
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 291 NKRCKDKK 298
>gi|195484275|ref|XP_002090625.1| GE12696 [Drosophila yakuba]
gi|194176726|gb|EDW90337.1| GE12696 [Drosophila yakuba]
Length = 540
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 113/245 (46%), Gaps = 56/245 (22%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFG 113
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
TKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D+
Sbjct: 114 TKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDV 173
Query: 188 -------------------------------------EAAKAKDGNCLDGDQPN---KRP 207
E D G + KRP
Sbjct: 174 LEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIREKRP 233
Query: 208 -----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
RT + KQL TL+ YN +P+P ++EQL + T L RV++VWFQN+R
Sbjct: 234 SGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKR 293
Query: 257 AKEKR 261
K+K+
Sbjct: 294 CKDKK 298
>gi|308492800|ref|XP_003108590.1| CRE-MEC-3 protein [Caenorhabditis remanei]
gi|308248330|gb|EFO92282.1| CRE-MEC-3 protein [Caenorhabditis remanei]
Length = 320
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 28 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFCKNGRIYCSQHYYKDHSSH 87
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 88 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 146
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 147 PPQMDDSCGPPAGTSEVPSCSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 206
Query: 197 CLDGDQPNKRPRTTITAKQ--LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T KQ L+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 207 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 266
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 267 RRSKERRLK 275
>gi|301767830|ref|XP_002919335.1| PREDICTED: LIM/homeobox protein Lhx9-like [Ailuropoda melanoleuca]
Length = 447
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 72/274 (26%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYE----------------AAKA------------------------------ 192
+ C+ +E AAK+
Sbjct: 170 SLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 229
Query: 193 ----------KDGNCLDGDQPNKRP-------RTTITAKQLETLKMAYNTSPKPARHVRE 235
+ + LD DQ P RT+ QL T+K + + P +
Sbjct: 230 IVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLK 289
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
QL+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 290 QLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 323
>gi|224493113|sp|A2I8Z7.1|LHX9_ASTFA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|121531644|gb|ABM55505.1| LIM/homeobox protein 9 [Astyanax mexicanus]
Length = 377
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 128/274 (46%), Gaps = 72/274 (26%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPSVSPEKPALCAGCGSKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M +
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFG-MRE 159
Query: 179 RKLVCK-----------------------------PDYEAAKA----------------- 192
+ C+ P + A A
Sbjct: 160 NLVYCRAHFESLVQGEYHAPLNYAELAAKGGGLALPYFNGASAVQKGRPRKRKSPAMGID 219
Query: 193 ----------KDGNCLDGDQPNKRP-------RTTITAKQLETLKMAYNTSPKPARHVRE 235
D + LD DQ P RT+ QL T+K + + P +
Sbjct: 220 INTYNSGCNENDADHLDRDQQPYPPSQKTKXMRTSFKHHQLRTMKSYFAINHNPDAKDLK 279
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
QL+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 280 QLAQKTGLTKRVLQVWFQNARAKFRRNVLRQENG 313
>gi|395513919|ref|XP_003761169.1| PREDICTED: LIM/homeobox protein Lhx5 [Sarcophilus harrisii]
Length = 383
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 44/170 (25%)
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCAGC GI P+ +VR+A+ V+HLNCF C++C +QL+TG+E Y++++ K VCK D
Sbjct: 71 RFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKED 130
Query: 187 Y-EAAKAKDG------NCLD-----------GDQPNKR---------------------- 206
Y + K+G +C D D P +
Sbjct: 131 YLNSPSVKEGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETTNNENEEQNSGT 190
Query: 207 ----PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWF 252
PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+Q F
Sbjct: 191 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQTVF 240
>gi|21668482|dbj|BAC01272.1| LIM homeobox protein 4 [Homo sapiens]
Length = 240
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 71/81 (87%)
Query: 199 DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQVWFQNRRAK
Sbjct: 2 DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAK 61
Query: 259 EKRLKKDAGRTRWSQYFRSMK 279
EKRLKKDAGR RW Q+++S+K
Sbjct: 62 EKRLKKDAGRHRWGQFYKSVK 82
>gi|20339337|gb|AAM19349.1| LIM homeobox protein [Homo sapiens]
Length = 239
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 71/81 (87%)
Query: 199 DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQVWFQNRRAK
Sbjct: 1 DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAK 60
Query: 259 EKRLKKDAGRTRWSQYFRSMK 279
EKRLKKDAGR RW Q+++S+K
Sbjct: 61 EKRLKKDAGRHRWGQFYKSVK 81
>gi|344276912|ref|XP_003410249.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Loxodonta africana]
Length = 388
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 72/274 (26%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYE----------------AAKA------------------------------ 192
+ C+ +E AAK+
Sbjct: 170 SLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 229
Query: 193 ----------KDGNCLDGDQPNKRP-------RTTITAKQLETLKMAYNTSPKPARHVRE 235
+ + LD DQ P RT+ QL T+K + + P +
Sbjct: 230 MVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLK 289
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
QL+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 290 QLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 323
>gi|228432|prf||1804264A homeobox protein
Length = 320
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 28 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSH 87
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 88 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 146
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 147 PPQMDDSCGPPAGTSEVPSCSSDSSIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 206
Query: 197 CLDGDQPNKRPRTTITAKQ--LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T KQ L+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 207 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 266
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 267 RRSKERRLK 275
>gi|258504046|gb|ACV72735.1| MEC-3 [Caenorhabditis remanei]
gi|258504056|gb|ACV72740.1| MEC-3 [Caenorhabditis remanei]
Length = 291
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 13 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSH 72
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 73 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 131
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 132 PPQMDDSCGPPAGASEVPSCSSDSVIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 191
Query: 197 CLDGDQPNKRPRTTITAK--QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T K QL+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 192 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 251
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 252 RRSKERRLK 260
>gi|258504044|gb|ACV72734.1| MEC-3 [Caenorhabditis remanei]
gi|258504062|gb|ACV72743.1| MEC-3 [Caenorhabditis remanei]
Length = 291
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 13 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSH 72
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 73 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 131
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 132 PPQMDDSCGPPAGTSEVPSCSSDSVIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 191
Query: 197 CLDGDQPNKRPRTTITAK--QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T K QL+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 192 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 251
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 252 RRSKERRLK 260
>gi|258504050|gb|ACV72737.1| MEC-3 [Caenorhabditis remanei]
gi|258504068|gb|ACV72746.1| MEC-3 [Caenorhabditis remanei]
Length = 291
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 13 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSH 72
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 73 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 131
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 132 PPQMDDSCGPPAGTSEVPSCSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 191
Query: 197 CLDGDQPNKRPRTTITAKQ--LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T KQ L+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 192 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 251
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 252 RRSKERRLK 260
>gi|258504052|gb|ACV72738.1| MEC-3 [Caenorhabditis remanei]
gi|258504072|gb|ACV72748.1| MEC-3 [Caenorhabditis remanei]
Length = 291
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 13 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSQ 72
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 73 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 131
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 132 PPQMDDSCGPPAGASEVPSCSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 191
Query: 197 CLDGDQPNKRPRTTITAKQ--LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T KQ L+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 192 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 251
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 252 RRSKERRLK 260
>gi|258504048|gb|ACV72736.1| MEC-3 [Caenorhabditis remanei]
gi|258504054|gb|ACV72739.1| MEC-3 [Caenorhabditis remanei]
gi|258504060|gb|ACV72742.1| MEC-3 [Caenorhabditis remanei]
gi|258504066|gb|ACV72745.1| MEC-3 [Caenorhabditis remanei]
Length = 291
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 13 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSH 72
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 73 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 131
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 132 PPQMDDSCGPPAGASEVPSCSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 191
Query: 197 CLDGDQPNKRPRTTITAK--QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T K QL+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 192 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 251
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 252 RRSKERRLK 260
>gi|258504074|gb|ACV72749.1| MEC-3 [Caenorhabditis remanei]
Length = 291
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 13 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSQ 72
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 73 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 131
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 132 PPQMDDSCGPPAGTSEVPSCSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 191
Query: 197 CLDGDQPNKRPRTTITAKQ--LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T KQ L+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 192 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 251
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 252 RRSKERRLK 260
>gi|4530371|gb|AAD22008.1| LIM homeobox protein 9 [Mus musculus]
Length = 378
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 72/274 (26%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCFTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYE----------------AAKA------------------------------ 192
+ C+ +E AAK+
Sbjct: 160 SLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 219
Query: 193 ----------KDGNCLDGDQPNKRP-------RTTITAKQLETLKMAYNTSPKPARHVRE 235
+ + LD DQ P RT+ QL T+K + + P +
Sbjct: 220 IVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLK 279
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
QL+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 280 QLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 313
>gi|395536948|ref|XP_003770470.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 362
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 27/217 (12%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKE 122
MP A P IL V + WH RCL C C L C+ ++ +FCK
Sbjct: 79 MPEAQPPLSSSVAWQIL------VNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKL 132
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F+R+GT+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 133 DYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVL 191
Query: 183 CKPDYEAA------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYN 224
C+ Y+ + ++GN + + +P KR RT+ TA QL+ ++ +
Sbjct: 192 CRVHYDCMMDNLKREVENGNGISVEGALLSEQDVNHPKPAKRARTSFTADQLQVMQAQFA 251
Query: 225 TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
P ++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 252 QDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK 288
>gi|126306413|ref|XP_001367734.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Monodelphis
domestica]
gi|395531043|ref|XP_003767592.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sarcophilus
harrisii]
Length = 388
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 131/274 (47%), Gaps = 72/274 (26%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYE----------------AAKA------------------------------ 192
+ C+ +E AAK+
Sbjct: 170 NLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVD 229
Query: 193 ----------KDGNCLDGDQPNKRP-------RTTITAKQLETLKMAYNTSPKPARHVRE 235
+ + LD DQ P RT+ QL T+K + + P +
Sbjct: 230 IVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLK 289
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
QL+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 290 QLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 323
>gi|258504058|gb|ACV72741.1| MEC-3 [Caenorhabditis remanei]
Length = 291
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ R++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 13 KCNCCNEQIYDRFIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSH 72
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 73 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 131
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 132 PPQMDDCCGPPAGTSEVPSCSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 191
Query: 197 CLDGDQPNKRPRTTITAKQ--LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T KQ L+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQN
Sbjct: 192 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 251
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 252 RRSKERRLK 260
>gi|395530909|ref|XP_003767529.1| PREDICTED: uncharacterized protein LOC100914829 [Sarcophilus
harrisii]
Length = 659
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 71/81 (87%)
Query: 199 DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
D + KRPRTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQVWFQNRRAK
Sbjct: 421 DSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAK 480
Query: 259 EKRLKKDAGRTRWSQYFRSMK 279
EKRLKKDAGR RW Q+++S+K
Sbjct: 481 EKRLKKDAGRHRWGQFYKSVK 501
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 8/75 (10%)
Query: 60 IMPVYMPIAS--------IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKC 111
+ P +P+ S IP+C GC ILD+FILKVL+R WH CLKC +C LA++C
Sbjct: 19 LTPTPLPLLSVTLSILTEIPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLADRC 78
Query: 112 FARNGLLFCKEDFFK 126
F+R G ++CKEDFF
Sbjct: 79 FSRAGSVYCKEDFFN 93
>gi|326931564|ref|XP_003211898.1| PREDICTED: LIM/homeobox protein Lhx1-like [Meleagris gallopavo]
Length = 222
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 96/167 (57%), Gaps = 45/167 (26%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FGTKCAGC GI P+ +VRRA+ V+HLNCF C+MC +QL+TG+E Y++++ K VCK DY
Sbjct: 6 FGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 65
Query: 188 --------------------------------------EAAKAKD---GNCLDGDQ---- 202
E+A D G+ + DQ
Sbjct: 66 LNNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGA 125
Query: 203 PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
+ PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV+Q
Sbjct: 126 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 172
>gi|371573888|gb|AEX38314.1| Lmx [Mnemiopsis leidyi]
Length = 428
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 13/207 (6%)
Query: 71 PKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRF- 128
P C C I + ++KV + WH +CL+C C PL++ CF ++ L+CK D ++R
Sbjct: 63 PVCTACRLPIEESLLMKVNDVFWHEQCLRCCLCNVPLSDSCFFDKHQRLYCKADHYQRIL 122
Query: 129 -GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
+ C C I +V R +YH+ CF C C+ L GDE+ + + LVCK
Sbjct: 123 DASTCCTCNGSINANDLVYRVHGSLYHIRCFTCTRCSSSLRKGDEYVMHGNGDLVCKTCS 182
Query: 188 EAAK------AKDGNCLDGDQPNKRPRTTITAKQ----LETLKMAYNTSPKPARHVREQL 237
+ D +C + KRPRT +++ Q L K A++ +P+P R RE+L
Sbjct: 183 DDGLRDHFYLGVDPSCRRDRREVKRPRTVLSSVQRKEHLSVFKEAFDRTPRPCRKEREKL 242
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKK 264
S TGL +RVVQVWFQN+RAK K+L +
Sbjct: 243 SSQTGLSVRVVQVWFQNQRAKVKKLAR 269
>gi|351694308|gb|EHA97226.1| LIM/homeobox protein Lhx6 [Heterocephalus glaber]
Length = 294
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 113/207 (54%), Gaps = 34/207 (16%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 40 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 99
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 100 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 158
Query: 183 CKPDYE--------AAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVR 234
C+ Y+ AA+ +G L+G P+++ ++ PKPA+ R
Sbjct: 159 CRIHYDTMIENLKRAAENGNGLTLEGAVPSEQ-----------------DSQPKPAKRAR 201
Query: 235 EQLSQDTGLDMRVVQVWFQNRRAKEKR 261
T +QVWFQN RA+ K+
Sbjct: 202 ------TSFTAEQLQVWFQNCRARHKK 222
>gi|224493106|sp|A2PZF9.1|LHX9_RANRU RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|124377598|dbj|BAF46216.1| LIM homeobox gene 9 alpha protein [Glandirana rugosa]
Length = 379
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 138/311 (44%), Gaps = 71/311 (22%)
Query: 27 GICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDR 83
GI + ++ E S S+ + + G MP S K C GCG I DR
Sbjct: 5 GITGGHIQGIMEEMERRSKSADNRLAKTIQVNG-RETRMPPLSPEKPTLCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDE-------------FYLMEDRKLVCKPDY 187
+++V RA++ VYHL+CF C C + L+TGD F L+ + +Y
Sbjct: 124 ASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHFELLVQGDFHSQLNY 183
Query: 188 EAAKAKDGNC-------------------------------------------LDGDQP- 203
AK G LD DQ
Sbjct: 184 TELSAKGGGLSALPYFTNGTGAVQKGRPRKRKSPALGVDIINYTSGCNENDTDLDRDQSY 243
Query: 204 -----NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
KR RT+ QL T K + + P +QL+Q TGL RV+QVWFQN RAK
Sbjct: 244 PPSQKTKRMRTSFKHHQLRTTKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK 303
Query: 259 EKR--LKKDAG 267
+R L+++ G
Sbjct: 304 FRRNLLRQENG 314
>gi|393904553|gb|EJD73731.1| hypothetical protein LOAG_18862, partial [Loa loa]
Length = 114
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 83/114 (72%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
+ C GC + ILDR++ VLE+ WHA C++C +C A L+E CF RNGL+ C++DF +R+G
Sbjct: 1 MAICAGCNNAILDRYVFHVLEKAWHATCIQCADCKALLSETCFTRNGLILCRKDFARRYG 60
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
T+CAGC MG+ +VRRA+D V+H+ CF C +C ++L+TG++ Y++ + VC
Sbjct: 61 TRCAGCNMGLDRNDLVRRARDKVFHVQCFQCTVCQKKLDTGEQLYILNGNRFVC 114
>gi|324529696|gb|ADY49033.1| LIM homeobox transcription factor 1-alpha, partial [Ascaris suum]
Length = 179
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 12/180 (6%)
Query: 89 LERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVR 146
++ WH CL C C L++ CF ++G ++C+ED + F +CA C + + PT V
Sbjct: 1 MDEFWHENCLSCSTCHLRLSDNSTCFIKDGHVYCREDHAQLFSARCARCGITLQPTDFVF 60
Query: 147 RAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE---AAKAKDGNCLDGDQP 203
R + YH CF+CV C L GD+ YL+ D +++C+ DYE + D +Q
Sbjct: 61 RCLNSTYHAQCFSCVYCNHPLKKGDQ-YLILDGQVICRADYELLLCNQPMPHAYFDIEQS 119
Query: 204 N------KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRA 257
KRPRT + +Q K+A+ S KP R VREQL+++TGL +RVVQVWFQN+RA
Sbjct: 120 ESNRKTPKRPRTILNTQQRRAFKLAFEKSAKPCRKVREQLAKETGLSVRVVQVWFQNQRA 179
>gi|431897001|gb|ELK06265.1| LIM/homeobox protein Lhx8 [Pteropus alecto]
Length = 306
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 114/201 (56%), Gaps = 21/201 (10%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG I+D+++LKV + WH RCL C C L C+ ++ +FCK D+F+R+GT
Sbjct: 96 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 155
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
+C+ C I T VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 156 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCM 214
Query: 191 ------KAKDGNCLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARH 232
+ ++GN + + +P KR RT+ TA QL+ ++ + P
Sbjct: 215 LDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQ 274
Query: 233 VREQLSQDTGLDMRVVQVWFQ 253
++L++ TGL RV+Q+ Q
Sbjct: 275 TLQKLAERTGLSRRVIQIHQQ 295
>gi|50344739|ref|NP_001002043.1| islet1, like [Danio rerio]
gi|37682137|gb|AAQ97995.1| ISL1 transcription factor, LIM/homeodomain [Danio rerio]
Length = 323
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 24/212 (11%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG ILDRFI++V + WHARCLKC EC L E C F R+G FC+E + +
Sbjct: 19 CVGCGLEILDRFIVRVSPDLEWHARCLKCAECHQFLDESCTCFIRDGKTFCREHYSRLST 78
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+KCA C+ + V R+Q +YH+ CF C C R L +GDE Y+++D +L+C +
Sbjct: 79 SKCAKCDKAFISKEFVMRSQVNIYHVQCFRCEGCNRPLLSGDE-YVLQDGQLLCTDHHNK 137
Query: 190 AKAKDGNCLD--GDQPNK------------------RPRTTITAKQLETLKMAYNTSPKP 229
+ N GD + R RT ++ QL L+ Y +P+P
Sbjct: 138 LMSASINQQKEAGDPSEEIKSTLSWSSMQRRSERATRVRTVLSETQLCMLQTCYTANPRP 197
Query: 230 ARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 198 DALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 229
>gi|397496393|ref|XP_003819022.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Pan paniscus]
Length = 357
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 112/225 (49%), Gaps = 41/225 (18%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F R+G +CK D+ + FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKL-----VCK 184
KCA C++G + +V RA+D VYH+ CF C +C+RQ R VC
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQXXXXXXXARXARRACAGVSGVCV 146
Query: 185 ----------------PDYEAAKAKDGNCLDGDQPNKRP------------RTTITAKQL 216
P A A G QP RP RT + KQL
Sbjct: 147 RVGLGAGGWRPLANLWPHPVLADAGSGR-----QPALRPHVHKQTEKTTRVRTVLNEKQL 201
Query: 217 ETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 202 HTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 246
>gi|156552953|ref|XP_001603153.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Nasonia
vitripennis]
Length = 458
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 115/248 (46%), Gaps = 60/248 (24%)
Query: 73 CGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D++IL+V + WHA CLKC C L E C F R+G +CK+D+ + FG
Sbjct: 47 CVGCGGRIHDQWILRVAPDLEWHAACLKCAACQQFLDESCTCFVRDGKTYCKDDYVRLFG 106
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
TKC C V RA+ +YHL CF C C RQL GDEF L D L C+ D++A
Sbjct: 107 TKCDKCRQSFNKNDFVMRAKTKIYHLECFRCSACMRQLVPGDEFALRSD-GLFCRHDHDA 165
Query: 190 AKAK--------------------------------DGNCLD------------------ 199
+ + DG+ D
Sbjct: 166 LEGEKICGGGVPAGIPGNENNNNANLTNNNHHLHPNDGSLSDSGSESGSHKTVGGARGAA 225
Query: 200 ------GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
D R RT + KQL TL+ Y +P+P ++EQL + TGL RV++VWFQ
Sbjct: 226 GHKGGGSDGKPTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ 285
Query: 254 NRRAKEKR 261
N+R K+K+
Sbjct: 286 NKRCKDKK 293
>gi|196013287|ref|XP_002116505.1| hypothetical protein TRIADDRAFT_30944 [Trichoplax adhaerens]
gi|190581096|gb|EDV21175.1| hypothetical protein TRIADDRAFT_30944 [Trichoplax adhaerens]
Length = 265
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 116/230 (50%), Gaps = 37/230 (16%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFK 126
+P C GCG I DR+IL+V + +HA CLKC C L EK CF RNG +CK DF
Sbjct: 14 LPFCSGCGGKINDRYILQVAPDMQYHAACLKCASCQQLLDEKETCFLRNGKPYCKSDFKM 73
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
F +C C P++ + RA+ YH++CF C C R+L GD Y ++ L CK
Sbjct: 74 LFHNRCTKCNRIFEPSEFIMRAKGNPYHIDCFRCHSCMRKLIPGDR-YGVDTYILYCKEH 132
Query: 187 YEAAKAKDGN-------CLDGDQPNK--------------------------RPRTTITA 213
Y + N D D N R RT +
Sbjct: 133 YLNKMSSSSNHDTLQSTMADSDWQNSDNTDTKSQSTHAKSKQLTSRKGMKGTRIRTVLNE 192
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263
KQL+TL+ Y ++P+P V+E+L + TGL+ RV++VWFQN+R K+K++K
Sbjct: 193 KQLQTLRSYYASNPRPDSTVKEKLVELTGLNPRVIRVWFQNKRCKDKKIK 242
>gi|354468096|ref|XP_003496503.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cricetulus griseus]
Length = 344
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 19/188 (10%)
Query: 93 WHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQD 150
WH RCL C C L C+ ++ +FCK D+F+R+GT+C+ C I T VRRA+
Sbjct: 93 WHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKG 152
Query: 151 LVYHLNCFACVMCARQLNTGDEFYLMEDRKL-----VCKPDYEAAKAKDGNCLDGD---- 201
VYHL CFAC C RQL+TG+EF L+E++ L +C D + ++GN + +
Sbjct: 153 NVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFICMLDNLKREVENGNGISVEGALL 212
Query: 202 --------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
+P KR RT+ TA QL+ ++ + P ++L++ TGL RV+QVWFQ
Sbjct: 213 TEQDVSHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQ 272
Query: 254 NRRAKEKR 261
N + K+
Sbjct: 273 NCSPRHKK 280
>gi|195125467|ref|XP_002007199.1| GI12512 [Drosophila mojavensis]
gi|193918808|gb|EDW17675.1| GI12512 [Drosophila mojavensis]
Length = 239
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 98/169 (57%), Gaps = 11/169 (6%)
Query: 103 CGAPL--AEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
C PL + CF R ++CK D+ K FG KC+ C GI + VRRA+DLV+HL CFAC
Sbjct: 2 CMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARDLVFHLACFAC 61
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDY----EAAKAKDGNCLDGD----QPNKRPRTTIT 212
C RQL+TG++F LM+DR ++CK Y E + DGD KR RTT T
Sbjct: 62 DQCGRQLSTGEQFALMDDR-VLCKAHYLETVEGGTTSSDDGCDGDGYHKSKTKRVRTTFT 120
Query: 213 AKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+QL+ L+ + P E+++ TGL RV QVWFQN RA++K+
Sbjct: 121 EEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKK 169
>gi|195375542|ref|XP_002046559.1| GJ12418 [Drosophila virilis]
gi|194153717|gb|EDW68901.1| GJ12418 [Drosophila virilis]
Length = 239
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 98/169 (57%), Gaps = 11/169 (6%)
Query: 103 CGAPL--AEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
C PL + CF R ++CK D+ K FG KC+ C GI + VRRA+DLV+HL CFAC
Sbjct: 2 CMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARDLVFHLACFAC 61
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDY----EAAKAKDGNCLDGD----QPNKRPRTTIT 212
C RQL+TG++F LM+DR ++CK Y E + DGD KR RTT T
Sbjct: 62 DQCGRQLSTGEQFALMDDR-VLCKAHYLETVEGGTTSSDDGCDGDGYHKSKTKRVRTTFT 120
Query: 213 AKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+QL+ L+ + P E+++ TGL RV QVWFQN RA++K+
Sbjct: 121 EEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKK 169
>gi|289541370|gb|ADD09808.1| LIM-homeodomain transcription factor islet protein [Branchiostoma
belcheri]
Length = 250
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 104/201 (51%), Gaps = 38/201 (18%)
Query: 97 CLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYH 154
CLKC +C L E C F R+G +CK + + FGTKCA C +G V RA++ +YH
Sbjct: 2 CLKCSDCNQYLDETCTCFVRDGKTYCKRCYVRLFGTKCAKCSLGFTKNDFVMRARNKIYH 61
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNC----------------- 197
++CF CV C+RQL GDEF L ED L CK D+E + N
Sbjct: 62 IDCFRCVACSRQLIPGDEFALRED-GLFCKTDHEVLERASNNVDSNGRASLGSTDLEMAT 120
Query: 198 -----------------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD 240
DG +P R RT + KQL TL+ Y +P+P ++EQL +
Sbjct: 121 RPESHGRSDQRRPQVHKQDGHKPT-RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEM 179
Query: 241 TGLDMRVVQVWFQNRRAKEKR 261
TGL RV++VWFQN+R K+K+
Sbjct: 180 TGLSPRVIRVWFQNKRCKDKK 200
>gi|344284256|ref|XP_003413884.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein
ISL-2-like [Loxodonta africana]
Length = 356
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 115/223 (51%), Gaps = 38/223 (17%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFG 129
C GCG I D+FIL+V + WHA CLKC EC L E C F G +
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVXXGRPRLGPQAVR--- 83
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-- 187
KCA C++G + +V RA+D VYH+ CF C +C+RQL GDEF L E +L+C+ D+
Sbjct: 84 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHGL 142
Query: 188 -----EAAKAKDGNCLDGD------------QPNKRP------------RTTITAKQLET 218
A + L G QP+ RP RT + KQL T
Sbjct: 143 LLERAAAGSPRSPGPLPGARGLHLPDPGAGRQPSLRPHVHKQTEKTTRVRTVLNEKQLHT 202
Query: 219 LKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
L+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 203 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 245
>gi|462588|sp|P34765.1|MEC3_CAEVU RecName: Full=Mechanosensory protein 3
gi|11060|emb|CAA45377.1| mec-3 [Caenorhabditis remanei]
Length = 320
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 58/249 (23%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT- 130
KC C + I DRFI ++ ++H C+KC C +PLAEKCF +NG ++C + ++K +
Sbjct: 28 KCNCCNEQIYDRFIYRMDNHSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSH 87
Query: 131 KCAGCEMGIPPTQVVRRAQ-DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV------- 182
+CAGC+ G+ PT +V + + LV+H+ C C +C R L+ G++ L++D +
Sbjct: 88 RCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHY 146
Query: 183 -------CKPD---------------------------YEAAKAKDGN------------ 196
C P ++ K D
Sbjct: 147 PPQMDDSCGPPAGTSEVPSCSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDF 206
Query: 197 CLDGDQPNKRPRTTITAKQ--LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
C D + KR T KQ L+ L ++ +PKP++H R + + +TGL MRV+QVWFQN
Sbjct: 207 CDDDSRMLKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKKALETGLSMRVIQVWFQN 266
Query: 255 RRAKEKRLK 263
RR+KE+RLK
Sbjct: 267 RRSKERRLK 275
>gi|313233722|emb|CBY09892.1| unnamed protein product [Oikopleura dioica]
Length = 403
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 34/222 (15%)
Query: 73 CGGCGDLILDRFILKV-LERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKRFG 129
C C I D F +V + ++H CLKC ECG A CF +N L +CKED+ + +
Sbjct: 44 CHSCRGKIDDAFSWQVHPDYSFHPHCLKCSECGCYFQDATSCFMKNELAYCKEDYERLYM 103
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP--DY 187
CA C+ + PT +V + ++ +H++CF+C C R L +GDEF L+E R L C+P +
Sbjct: 104 EHCAKCDHALQPTDLVHKVKNCTFHVDCFSCSSCVRVLVSGDEFLLIETR-LFCRPCHEL 162
Query: 188 EAAKAKDGN---------------CLDGDQPNK-------------RPRTTITAKQLETL 219
E+ +++ G+ + + NK R RT + KQL TL
Sbjct: 163 ESEQSRIGSRYITRTAGETDRKYGAPEQAENNKVTSKFFSMSSYFRRVRTVLNEKQLHTL 222
Query: 220 KMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 223 RTCYQANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 264
>gi|56185681|gb|AAV84105.1| apterous [Euprymna scolopes]
Length = 423
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 110/250 (44%), Gaps = 61/250 (24%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKRFGT 130
C GCGDLI +R+ L V WH CLKC+EC + L C+ R G +C++D+ + F T
Sbjct: 92 CAGCGDLITERYYLNVANNAWHFNCLKCYECKSTLDTERSCYERMGNYYCRDDYQRLFST 151
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED----------- 178
+CA C MGI T +V RA++ VYHL CF C C + L GD F L E
Sbjct: 152 QRCARCNMGIQSTDLVMRARNHVYHLTCFTCFTCNKALQAGDTFGLREHLVYCQVHYENS 211
Query: 179 ---RKLVCKPDYEAAKA---------------------------------------KDGN 196
+ PD A + + G+
Sbjct: 212 YHAEYIALSPDMNAGQMPYYNGVGTLQKGRPRKRRSPNISSDEFAHNIGLGADSLDRAGD 271
Query: 197 CLDGDQ-----PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVW 251
+D D KR RT+ QL TLK + + P + L+Q TGL RV+QVW
Sbjct: 272 MIDRDTYQNAPRQKRMRTSFKHHQLRTLKSYFAVNHNPGAKDLKHLAQKTGLTKRVLQVW 331
Query: 252 FQNRRAKEKR 261
FQN RAK +R
Sbjct: 332 FQNARAKFRR 341
>gi|46276323|gb|AAS86420.1| lhx7 [Oryzias latipes]
Length = 191
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 106/192 (55%), Gaps = 21/192 (10%)
Query: 87 KVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQV 144
KV + WH RCL C C L C+ + +FCK D+F+R+GT CA C I T
Sbjct: 1 KVNDLCWHVRCLSCSVCQTSLGSHASCYIKEKEIFCKLDYFRRYGTWCACCGRNIHSTDW 60
Query: 145 VRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--------AAKAKDGN 196
VRRA+ VYHL CFAC C RQL+TG+EF L+E K++C+ Y+ A + G
Sbjct: 61 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEG-KVLCRIHYDCMLDNLKRAVEKGTGV 119
Query: 197 CLDG----------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
++G +P+KR RT+ A QL+ ++ + P ++L+++TGL R
Sbjct: 120 NMEGAVPTEREINQPKPSKRARTSFPADQLQVMQAQFAQDNNPDAQTLQKLAEETGLSRR 179
Query: 247 VVQVWFQNRRAK 258
V+QVWFQN A+
Sbjct: 180 VIQVWFQNCSAR 191
>gi|195016322|ref|XP_001984389.1| GH16430 [Drosophila grimshawi]
gi|193897871|gb|EDV96737.1| GH16430 [Drosophila grimshawi]
Length = 239
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 97/169 (57%), Gaps = 11/169 (6%)
Query: 103 CGAPL--AEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
C PL + CF R ++CK D+ K FG KC+ C I + VRRA+DLV+HL CFAC
Sbjct: 2 CMCPLDRQQSCFIRERQVYCKADYSKSFGAKCSKCCRSISASDWVRRARDLVFHLACFAC 61
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDY----EAAKAKDGNCLDGD----QPNKRPRTTIT 212
C RQL+TG++F LM+DR ++CK Y E + DGD KR RTT T
Sbjct: 62 DQCGRQLSTGEQFALMDDR-VLCKAHYLETVEGGTTSSDDGCDGDGYHKSKTKRVRTTFT 120
Query: 213 AKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+QL+ L+ + P E+++ TGL RV QVWFQN RA++K+
Sbjct: 121 EEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKK 169
>gi|558491|gb|AAB31260.1| LIM-type homeodomain [Mus sp.]
Length = 230
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 66/72 (91%)
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAG 267
RTTITAKQLETLK AY SPKPARHVREQLS +TGLDMRVVQVWFQNRRAKEKRLKKDAG
Sbjct: 1 RTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAG 60
Query: 268 RTRWSQYFRSMK 279
R RW Q+++S+K
Sbjct: 61 RHRWGQFYKSVK 72
>gi|341880444|gb|EGT36379.1| CBN-MEC-3 protein [Caenorhabditis brenneri]
Length = 305
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 60/232 (25%)
Query: 91 RTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQ 149
R++H C+KC C +PL+EKCF +NG ++C + ++K +CAGC+ G+ PT +V + +
Sbjct: 30 RSYHENCVKCTICESPLSEKCFWKNGRIYCSQHYYKDHSAHRCAGCKKGVSPTDMVYKLK 89
Query: 150 -DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV-------------------------- 182
LV+H+ C C +C R L+ G++ L++D +
Sbjct: 90 AGLVFHVECHFCTLCGRHLSPGEQI-LVDDTMMTVSCMTHYPPQIEDSCGSTSIVGPSEV 148
Query: 183 --CKPDYEAAKA----KDG-----------------------NCLDGDQPNKR--PRTTI 211
C D A A DG C D + KR PRTTI
Sbjct: 149 PSCSSDASAVVAPYPMDDGFPFQVKKEVDAYGYNFEHYSFSDFCDDDSRMLKRRGPRTTI 208
Query: 212 TAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263
QL+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQNRR+KE+RLK
Sbjct: 209 KQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQNRRSKERRLK 260
>gi|61200414|gb|AAX39779.1| ISL1 transcription factor, partial [Ovis aries]
Length = 243
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 102/197 (51%), Gaps = 34/197 (17%)
Query: 98 LKCHECGAPLAEKC--FARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHL 155
LKC EC L E C F R+G +CK D+ + +G KCA C +G V RA+ VYH+
Sbjct: 1 LKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI 60
Query: 156 NCFACVMCARQLNTGDEFYLMEDRKLVCKPDY---EAAKAKDGNCL-------------- 198
CF CV C+RQL GDEF L ED L C+ D+ E A G+ L
Sbjct: 61 ECFRCVACSRQLIPGDEFALRED-GLFCRADHDVVERASLGAGDPLSPLHPARPLQMAAE 119
Query: 199 --DGDQPNKRP------------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
QP RP RT + KQL TL+ Y +P+P ++EQL + TGL
Sbjct: 120 PISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLS 179
Query: 245 MRVVQVWFQNRRAKEKR 261
RV++VWFQN+R K+K+
Sbjct: 180 PRVIRVWFQNKRCKDKK 196
>gi|508712|gb|AAB08752.1| LIM-homeobox domain protein [Homo sapiens]
Length = 423
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 94/148 (63%), Gaps = 7/148 (4%)
Query: 46 SSFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECG 104
S SS+ + D E MP + A++ CGGCG I DR+ L +++ WH RCLKC EC
Sbjct: 26 SRISSAIDRGDTETTMPSISSDRAAL--CGGCGGKISDRYYLLAVDKQWHMRCLKCCECK 83
Query: 105 APLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACV 161
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 84 LNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCT 143
Query: 162 MCARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 144 TCNKMLTTGDHFG-MKDSLVYCRLHFEA 170
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 194 DGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL RV
Sbjct: 248 DAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 307
Query: 248 VQVWFQNRRAKEKR 261
+QVWFQN RAK +R
Sbjct: 308 LQVWFQNARAKFRR 321
>gi|432876050|ref|XP_004072952.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oryzias latipes]
Length = 380
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
Query: 43 GSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHE 102
G S++ SS+ + + E MP M + C GCG I DR+ L +++ WH RCLKC E
Sbjct: 45 GESAAISSAIDMGESETPMPC-MTSERVALCAGCGRKIADRYYLLAVDKQWHMRCLKCCE 103
Query: 103 CGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFA 159
C L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF
Sbjct: 104 CKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFT 163
Query: 160 CVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
C C + L TGD F M+D + C+ +E
Sbjct: 164 CTTCGKMLTTGDHFG-MKDSLVYCRLHFE 191
>gi|405961382|gb|EKC27193.1| LIM/homeobox protein Lhx9 [Crassostrea gigas]
Length = 415
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 61 MPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLL 118
MPV S C GCG I DR+ L +++ WH CLKC EC L + CFAR+G +
Sbjct: 50 MPVLNKFESPSFCAGCGSRIFDRYYLMAVDKQWHVNCLKCCECKIGLDSELTCFARDGNI 109
Query: 119 FCKEDFFKRFGTK-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME 177
+CKED+++R+ K C C GI ++V RA+DLV+H+NCF C C + L TGD+F M+
Sbjct: 110 YCKEDYYRRYAVKRCTRCHQGITANELVMRAKDLVFHINCFTCASCNKTLTTGDQFG-MQ 168
Query: 178 DRKLVCKPDYE 188
D + C+ DYE
Sbjct: 169 DDLIYCRTDYE 179
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 200 GDQP---NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNR- 255
G QP KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN
Sbjct: 256 GSQPPPRQKRVRTSFKHHQLRTMKSYFALNHNPDAKDLKQLAQKTGLSKRVLQVWFQNEG 315
Query: 256 -----RAKEKR--LKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFS 297
RAK +R LK D+ +T S + SP D+ KI D + S
Sbjct: 316 VVQNARAKYRRNMLKSDSDKTGQGGSQSSDQSAVSPDDD-KIKDDQSIS 363
>gi|348535176|ref|XP_003455077.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oreochromis niloticus]
Length = 417
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 5/148 (3%)
Query: 45 SSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECG 104
S++ SS+ + + E MP M + C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 47 SAAISSAIDMGESETSMPC-MTNERVALCAGCGRKIADRYYLLAVDKQWHMRCLKCCECK 105
Query: 105 APLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACV 161
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 106 LNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCT 165
Query: 162 MCARQLNTGDEFYLMEDRKLVCKPDYEA 189
C++ L TGD F M+D + C+ +E
Sbjct: 166 TCSKMLTTGDHFG-MKDSLVYCRLHFET 192
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 250 YNAALSCNENDGESMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 309
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR--LKKDAGRTRWSQYFRSMKGGT--SPKDEL 288
+Q TGL RV+QVWFQN RAK +R L++++ + +++GGT P E+
Sbjct: 310 AQKTGLTKRVLQVWFQNARAKFRRNLLRQESTGVDKASDGSTLQGGTPSGPASEI 364
>gi|133778048|gb|AAI27382.2| LIM homeobox 2 [Danio rerio]
gi|182888988|gb|AAI64490.1| Lhx2 protein [Danio rerio]
Length = 396
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 8/169 (4%)
Query: 27 GICASKLHDLLHEAH---AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDR 83
G+ ++H ++ E S++ SS+ + + E MP + + C GCG I DR
Sbjct: 5 GLPGGEMHGVMEEMERRGKSDSATISSAIDMGETETNMPS-ISGDRVALCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + CK +E
Sbjct: 124 ASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCKLHFET 171
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 229 YNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 288
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 289 AQKTGLTKRVLQVWFQNARAKFRR 312
>gi|326925561|ref|XP_003208981.1| PREDICTED: LIM/homeobox protein Lhx8-like [Meleagris gallopavo]
Length = 290
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 21/197 (10%)
Query: 85 ILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPT 142
+L+V + WH RCL C C L C+ ++ +FCK D+F+R+GT+C+ C I T
Sbjct: 21 LLRVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHST 80
Query: 143 QVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA------KAKDGN 196
VRRA+ VYHL CFAC C RQL+TG+EF L+E+ K++C+ Y+ + ++GN
Sbjct: 81 DWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHYDCMLDNLKREVENGN 139
Query: 197 CLDGD------------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
+ + +P KR RT+ TA QL+ ++ + P ++L++
Sbjct: 140 GVSVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAEXXXXX 199
Query: 245 MRVVQVWFQNRRAKEKR 261
QVWFQN RA+ K+
Sbjct: 200 XXFFQVWFQNCRARHKK 216
>gi|345326124|ref|XP_001508297.2| PREDICTED: hypothetical protein LOC100077000 [Ornithorhynchus
anatinus]
Length = 553
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 96/189 (50%), Gaps = 33/189 (17%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+L+V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 209 CEGCQRPISDRFLLRVNEASWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 268
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK- 191
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 269 SGCLEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKSDYEKEKD 327
Query: 192 ----------------AKDGNCL-------------DGDQPN--KRPRTTITAKQLETLK 220
+DG+ DG P KRPRT +T +Q K
Sbjct: 328 LLSSVSPDESDSVKSDDEDGDVKPTKGQASQGKGSDDGKDPRRPKRPRTILTTQQRRAFK 387
Query: 221 MAYNTSPKP 229
++ S KP
Sbjct: 388 ASFEVSSKP 396
>gi|426223096|ref|XP_004023228.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like
[Ovis aries]
Length = 370
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 104/181 (57%), Gaps = 24/181 (13%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 80 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 139
Query: 123 DFFKRFGTKCAGCEMGIPP----TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
D+F RFGTKCA C P + VRRA+ YHL CFAC C RQL+TG+EF L+E+
Sbjct: 140 DYFSRFGTKCARCGRQSTPEIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE 199
Query: 179 RKLVCKPDYE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKM 221
K++C+ Y+ AA+ +G L+G +P KR RT+ TA+QL+ ++
Sbjct: 200 -KVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVPRL 258
Query: 222 A 222
A
Sbjct: 259 A 259
>gi|241811703|ref|XP_002416452.1| lim homeobox protein, putative [Ixodes scapularis]
gi|215510916|gb|EEC20369.1| lim homeobox protein, putative [Ixodes scapularis]
Length = 155
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 88/140 (62%), Gaps = 10/140 (7%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KCAGC I P+++V RA + V+H+ CFACV+C R L GD+F + R L C+PD+
Sbjct: 2 FGVKCAGCLGSIAPSELVMRALEHVFHVACFACVVCGRTLQKGDQFVVRSGR-LYCRPDF 60
Query: 188 EAAKA------KDGNCL---DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
E A ++G DG + KRPRT +T Q K ++ S KP R VRE L+
Sbjct: 61 EKEMALVPGAGQNGQPAVRPDGRRGPKRPRTILTTAQRRAFKASFEISQKPCRKVRETLA 120
Query: 239 QDTGLDMRVVQVWFQNRRAK 258
++TGL +R+VQVWFQN+RAK
Sbjct: 121 KETGLSVRIVQVWFQNQRAK 140
>gi|190338019|gb|AAI62549.1| LIM homeobox 2 [Danio rerio]
Length = 396
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 8/169 (4%)
Query: 27 GICASKLHDLLHEAH---AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDR 83
G+ ++H ++ E S++ SS+ + + E MP + + C GCG I DR
Sbjct: 5 GLPGGEMHGVMEEMERRGKSDSATISSAIDMGETETNMPS-ISGDRVALCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +E
Sbjct: 124 ASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFET 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 229 YNAALSCNENDGDAMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 288
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 289 AQKTGLTKRVLQVWFQNARAKFRR 312
>gi|547852|sp|P36198.1|LHX2_RAT RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
Length = 426
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 7/148 (4%)
Query: 46 SSFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECG 104
S SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 26 SGISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECK 83
Query: 105 APLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACV 161
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 84 LNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISESEMVMRARDLVYHLNCFTCT 143
Query: 162 MCARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 144 TCNKMLTTGDHFG-MKDSLVYCRLHFEA 170
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 238 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 297
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 298 AQKTGLTKRVLQVWFQNARAKFRR 321
>gi|75993708|gb|ABA33890.1| lim homeobox transcription factor 2 [Danio rerio]
Length = 396
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 8/169 (4%)
Query: 27 GICASKLHDLLHEAH---AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDR 83
G+ ++H ++ E S++ SS+ + + E MP + + C GCG I DR
Sbjct: 5 GLPGGEMHGVMEEMERRGKSDSATISSAIDMGETETNMPS-ISGDRVALCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +E
Sbjct: 124 ASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFET 171
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 229 YNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 288
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 289 AQKTGLTKRVLQVWFQNARAKFRR 312
>gi|187171273|ref|NP_001035099.3| LIM/homeobox protein Lhx2 [Danio rerio]
Length = 427
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 8/169 (4%)
Query: 27 GICASKLHDLLHEAH---AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDR 83
G+ ++H ++ E S++ SS+ + + E MP + + C GCG I DR
Sbjct: 36 GLPGGEMHGVMEEMERRGKSDSATISSAIDMGETETNMPS-ISGDRVALCAGCGGKISDR 94
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 95 YYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGIS 154
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +E
Sbjct: 155 ASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFET 202
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 260 YNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 319
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 320 AQKTGLTKRVLQVWFQNARAKFRR 343
>gi|355567447|gb|EHH23788.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 193 KDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL R
Sbjct: 249 NDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKR 308
Query: 247 VVQVWFQNRRAKEKR 261
V+QVWFQN RAK +R
Sbjct: 309 VLQVWFQNARAKFRR 323
>gi|256073008|ref|XP_002572825.1| arrowhead [Schistosoma mansoni]
gi|360042902|emb|CCD78312.1| putative lim homeobox protein [Schistosoma mansoni]
Length = 418
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 10/156 (6%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTK 131
+C C +I D++ + + TWH CL+C +CG L E+C+ ++G L+C+EDF K FG K
Sbjct: 128 RCNECQSIIFDQYYHSIDDLTWHQNCLRCFDCGFVLTERCYTKDGHLYCREDFIKNFGPK 187
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM-EDRKLVCKPDYEAA 190
C+ C I ++VR A+ VYH+NCF C +C +Q TGD++YL+ D+ L+C+ Y +
Sbjct: 188 CSACHKLIRNGELVRFARHYVYHINCFQCTICKKQFTTGDQYYLLYSDKFLICREHYYES 247
Query: 191 KAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTS 226
G + TT T+ +++ L + N++
Sbjct: 248 ---------GSSLIPQISTTRTSSEMDLLSILTNSN 274
>gi|444707251|gb|ELW48535.1| LIM/homeobox protein Lhx2 [Tupaia chinensis]
Length = 442
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SSS + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSSIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 194 DGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL RV
Sbjct: 286 DAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 345
Query: 248 VQVWFQNRRAKEKR 261
+QVWFQN RAK +R
Sbjct: 346 LQVWFQNARAKFRR 359
>gi|6754538|ref|NP_034840.1| LIM/homeobox protein Lhx2 [Mus musculus]
gi|157817308|ref|NP_001100041.1| LIM/homeobox protein Lhx2 [Rattus norvegicus]
gi|8134552|sp|Q9Z0S2.1|LHX2_MOUSE RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|4406516|gb|AAD20012.1| LIM-homeodomain protein MLHX2 [Mus musculus]
gi|26343551|dbj|BAC35432.1| unnamed protein product [Mus musculus]
gi|33416474|gb|AAH55741.1| LIM homeobox protein 2 [Mus musculus]
gi|149047902|gb|EDM00518.1| LIM homeobox protein 2 (predicted) [Rattus norvegicus]
Length = 406
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|4406518|gb|AAD20013.1| LIM-homeodomain protein HLHX2 [Homo sapiens]
Length = 389
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 11 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 68
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 69 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 128
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 129 CNKMLTTGDHFG-MKDSLVYCRLHFEA 154
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 223 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 282
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 283 AQKTGLTKRVLQVWFQNARAKFRR 306
>gi|344243883|gb|EGV99986.1| LIM/homeobox protein Lhx2 [Cricetulus griseus]
Length = 385
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 11 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 68
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 69 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 128
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 129 CNKMLTTGDHFG-MKDSLVYCRLHFEA 154
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 219 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 278
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 279 AQKTGLTKRVLQVWFQNARAKFRR 302
>gi|242023961|ref|XP_002432399.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
gi|212517822|gb|EEB19661.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
Length = 383
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 87/138 (63%), Gaps = 5/138 (3%)
Query: 68 ASIPK-CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDF 124
AS P C GCG ILDR+ L ++R WH+ CLKC EC +PL + CFAR+G ++CKED+
Sbjct: 25 ASCPTACAGCGGRILDRYYLLAVDRQWHSPCLKCTECKSPLDTELTCFARDGNIYCKEDY 84
Query: 125 FKRFGTK-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVC 183
++ F K C+ C+ GI +++V RA+D+V+H+NCF C C L+ GD F M + + C
Sbjct: 85 YRLFAIKRCSRCQTGISASELVMRAKDMVFHINCFTCTSCGIPLSKGDHFG-MRNGLVYC 143
Query: 184 KPDYEAAKAKDGNCLDGD 201
P YE + D C D D
Sbjct: 144 HPHYEHLCSHDPYCNDLD 161
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 49/247 (19%)
Query: 64 YMPIASIPKCGGCGDLI-LDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFC 120
Y + +I +C C I +++ + +H C C CG PL+ + RNGL++C
Sbjct: 84 YYRLFAIKRCSRCQTGISASELVMRAKDMVFHINCFTCTSCGIPLSKGDHFGMRNGLVYC 143
Query: 121 KE--------------------------DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYH 154
DF+ + +G G+ + +R
Sbjct: 144 HPHYEHLCSHDPYCNDLDNVFRAGGSPADFYNTGNDRISG---GVQKGRPRKRKLQTPID 200
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDG------DQPNKRPR 208
+ + + + +L+T L + E + + D DG Q KR R
Sbjct: 201 SSPGSDLNVSLRLSTATLEMLHPN---------ELSSSMDSISYDGPLTVPSQQSTKRMR 251
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDA 266
T+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R +++++
Sbjct: 252 TSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNLMRQES 311
Query: 267 GRTRWSQ 273
G + Q
Sbjct: 312 GSNQQQQ 318
>gi|432095435|gb|ELK26634.1| LIM/homeobox protein Lhx2 [Myotis davidii]
Length = 389
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 11 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 68
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 69 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 128
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 129 CNKMLTTGDHFG-MKDSLVYCRLHFEA 154
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 223 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 282
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 283 AQKTGLTKRVLQVWFQNARAKFRR 306
>gi|449478514|ref|XP_002188995.2| PREDICTED: LIM/homeobox protein LMX-1.2-like [Taeniopygia guttata]
Length = 352
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 91/172 (52%), Gaps = 33/172 (19%)
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
F+ F KC+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK
Sbjct: 60 FRLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCK 118
Query: 185 PDYEAAK------------------------------AKDGNCLDGDQPN--KRPRTTIT 212
DYE K + DG P KRPRT +T
Sbjct: 119 SDYEKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTILT 178
Query: 213 AKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 179 TQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 230
>gi|387763115|ref|NP_001248721.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
gi|402896424|ref|XP_003911300.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Papio anubis]
gi|380818036|gb|AFE80892.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|332229975|ref|XP_003264161.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Nomascus
leucogenys]
Length = 406
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDSETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|281427312|ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]
gi|300794175|ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]
gi|239937382|dbj|BAH79127.1| LIM homeobox protein 2 [Sus scrofa]
gi|296482193|tpg|DAA24308.1| TPA: LIM homeobox protein 2-like [Bos taurus]
Length = 406
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|348570108|ref|XP_003470839.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Cavia porcellus]
Length = 406
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|30795196|ref|NP_004780.3| LIM/homeobox protein Lhx2 [Homo sapiens]
gi|297685314|ref|XP_002820237.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pongo abelii]
gi|397473226|ref|XP_003808118.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pan paniscus]
gi|426362988|ref|XP_004048630.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Gorilla gorilla
gorilla]
gi|8247936|sp|P50458.2|LHX2_HUMAN RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|62739692|gb|AAH93662.1| LIM homeobox 2 [Homo sapiens]
gi|85567249|gb|AAI12186.1| LIM homeobox protein 2 [Homo sapiens]
gi|119607982|gb|EAW87576.1| LIM homeobox 2, isoform CRA_a [Homo sapiens]
gi|167773563|gb|ABZ92216.1| LIM homeobox 2 [synthetic construct]
gi|261859194|dbj|BAI46119.1| LIM homeobox 2 [synthetic construct]
Length = 406
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|395824161|ref|XP_003785339.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Otolemur garnettii]
Length = 406
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|403299862|ref|XP_003940693.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 406
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|301769255|ref|XP_002920044.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 1 [Ailuropoda
melanoleuca]
gi|345806102|ref|XP_863668.2| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Canis lupus
familiaris]
gi|281350174|gb|EFB25758.1| hypothetical protein PANDA_008723 [Ailuropoda melanoleuca]
Length = 406
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|354498706|ref|XP_003511455.1| PREDICTED: LIM/homeobox protein Lhx2-like [Cricetulus griseus]
Length = 475
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 101 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 158
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 159 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 218
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 219 CNKMLTTGDHFG-MKDSLVYCRLHFEA 244
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 309 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 368
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 369 AQKTGLTKRVLQVWFQNARAKFRR 392
>gi|291408369|ref|XP_002720520.1| PREDICTED: LIM homeobox protein 2-like [Oryctolagus cuniculus]
Length = 406
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|449478340|ref|XP_004175607.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Taeniopygia
guttata]
Length = 399
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 10/169 (5%)
Query: 28 ICASKLHDLLHEAHAGSSS---SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDR 83
+ S++H ++ E + S + SS+ + + E MP + A++ C GCG I DR
Sbjct: 6 LSGSEMHGVIDEMDRRTKSEAPAISSAIDRGETETTMPSISSDRAAL--CAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +E
Sbjct: 124 ASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDNLVYCRLHFET 171
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQ------PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ LD DQ KR RT+ QL T+K + + P +QL
Sbjct: 233 YNAALSCNENDGDHLDRDQQYPSNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 292
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 293 AQKTGLTKRVLQVWFQNARAKFRR 316
>gi|426223060|ref|XP_004005697.1| PREDICTED: LIM/homeobox protein Lhx2 [Ovis aries]
Length = 404
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 262 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 321
>gi|301769257|ref|XP_002920045.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 2 [Ailuropoda
melanoleuca]
Length = 404
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 7/137 (5%)
Query: 59 GIMPVYMPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFA 113
G P MP S + C GCG I DR+ L +++ WH RCLKC EC L + CF+
Sbjct: 35 GGNPATMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFS 94
Query: 114 RNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDE 172
++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C C + L TGD
Sbjct: 95 KDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDH 154
Query: 173 FYLMEDRKLVCKPDYEA 189
F M+D + C+ +EA
Sbjct: 155 FG-MKDSLVYCRLHFEA 170
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 194 DGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL RV
Sbjct: 248 DAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 307
Query: 248 VQVWFQNRRAKEKR 261
+QVWFQN RAK +R
Sbjct: 308 LQVWFQNARAKFRR 321
>gi|291290877|ref|NP_001167469.1| LIM homeobox 2 [Xenopus laevis]
gi|37720481|gb|AAN41461.1| LIM homeobox protein 2 [Xenopus laevis]
Length = 419
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 92/149 (61%), Gaps = 9/149 (6%)
Query: 46 SSFSSSFNDVDYEGIMPVYMPIAS--IPKCGGCGDLILDRFILKVLERTWHARCLKCHEC 103
S+ SS + + E IMP I+S C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 48 SAISSVIDRGETETIMP---SISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCEC 104
Query: 104 GAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 105 KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTC 164
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +E
Sbjct: 165 NTCNKMLTTGDHFG-MKDNLVYCRLHFET 192
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQ------PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D DQ +KR RT+ QL T+K + + P +QL
Sbjct: 253 YNAALSCNENDGDHMDRDQQYTSNQKSKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 312
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 313 AQKTGLTKRVLQVWFQNARAKFRR 336
>gi|395505659|ref|XP_003757157.1| PREDICTED: LIM/homeobox protein Lhx2 [Sarcophilus harrisii]
Length = 408
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 93/147 (63%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + + E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGETETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQ------PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ LD DQ KR RT+ QL T+K + + P +QL
Sbjct: 242 YNAALSCNENDGDHLDRDQQYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 301
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 302 AQKTGLTKRVLQVWFQNARAKFRR 325
>gi|45382441|ref|NP_990220.1| LIM/homeobox protein Lhx2 [Gallus gallus]
gi|2340819|dbj|BAA21846.1| LIM homeodomain [Gallus gallus]
Length = 400
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 98/168 (58%), Gaps = 7/168 (4%)
Query: 28 ICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDRF 84
+ S++H ++ E + + ++ + +D MP S + C GCG I DR+
Sbjct: 6 LSGSEMHGVIDEMDRRTKTEAAAISSAIDRGETETQTMPSISSDRAALCAGCGGKISDRY 65
Query: 85 ILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPP 141
L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 66 YLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISA 125
Query: 142 TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +E
Sbjct: 126 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDNLVYCRLHFET 172
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQ------PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ LD DQ KR RT+ QL T+K + + P +QL
Sbjct: 234 YNAALSCNENDGDHLDRDQQYPSNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 293
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 294 AQKTGLTKRVLQVWFQNARAKFRR 317
>gi|224073927|ref|XP_002191376.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Taeniopygia
guttata]
Length = 436
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 28 ICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDRF 84
+ S++H ++ E + S + + +D MP S + C GCG I DR+
Sbjct: 42 LSGSEMHGVIDEMDRRTKSEAPAISSAIDRGETETQTMPSISSDRAALCAGCGGKISDRY 101
Query: 85 ILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPP 141
L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 102 YLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISA 161
Query: 142 TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +E
Sbjct: 162 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDNLVYCRLHFET 208
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQ------PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ LD DQ KR RT+ QL T+K + + P +QL
Sbjct: 270 YNAALSCNENDGDHLDRDQQYPSNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 329
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 330 AQKTGLTKRVLQVWFQNARAKFRR 353
>gi|449477358|ref|XP_004176635.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5
[Taeniopygia guttata]
Length = 328
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 98/184 (53%), Gaps = 36/184 (19%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC ILDRF+L VL+R WH +C++C EC L EKCF+R G L+CK DFF+
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFQ------ 58
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192
Y +C R L+ + + +D K D +
Sbjct: 59 --------------------YRSRVSSCT--DRSLSPDLQDPMQDDTKET---DNSTSSD 93
Query: 193 KDGNCLDGDQPN-----KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
K+ + ++ N + PRTTI AKQLETLK A+ +PKP RH+REQL+Q+TGL+MRV
Sbjct: 94 KETTNNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRV 153
Query: 248 VQVW 251
+Q +
Sbjct: 154 IQSY 157
>gi|259013283|ref|NP_001158443.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
gi|197320559|gb|ACH68441.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
Length = 402
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 87/138 (63%), Gaps = 4/138 (2%)
Query: 55 VDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CF 112
++ E MPV C GCG ILDR+ L +++ WH +CLKC EC L + CF
Sbjct: 41 LEIERTMPVINRENKPCICAGCGGRILDRYYLLAVDKQWHMQCLKCCECKLRLDSELTCF 100
Query: 113 ARNGLLFCKEDFFKRFGTK-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGD 171
A++G ++CK+D+++RF K CA C +GI +++V RA+DLVYHL+CF C C + L TGD
Sbjct: 101 AKDGSIYCKDDYYRRFSVKRCARCHLGISASEMVMRARDLVYHLSCFTCATCNKALATGD 160
Query: 172 EFYLMEDRKLVCKPDYEA 189
F M+D + C+ YEA
Sbjct: 161 HFG-MKDAMVYCRSHYEA 177
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 16/204 (7%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C LA + ++ +++C+ +
Sbjct: 117 SVKRCARCHLGISASEMVMRARDLVYHLSCFTCATCNKALATGDHFGMKDAMVYCRSHYE 176
Query: 126 KRFGTKCAGCEMGIPPTQV-------VRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
T+ MG+ P Q Y+ N V R L D
Sbjct: 177 AMLHTEHV---MGLSPYHHQPSPMPGASPTQHTPYY-NGVGAVQKGRPRKRKSP-NLEND 231
Query: 179 RKLVCKPDYEAAKAKDGNCLD-GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
P ++ +D N Q KR RT+ QL T+K + + P +QL
Sbjct: 232 YHTQGYPHNDSENHQDLNSDQYTQQRTKRMRTSFKHHQLRTMKSYFALNHNPDAKDLKQL 291
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+ VWFQN RAK +R
Sbjct: 292 AQKTGLTKRVLHVWFQNARAKYRR 315
>gi|34733871|gb|AAQ81868.1| LIM homeobox gene protein 2 [Ambystoma mexicanum]
Length = 398
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 94/151 (62%), Gaps = 7/151 (4%)
Query: 43 GSSSSFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCH 101
G + SS+ + D + MP + A++ C GCG I DR+ L +++ WH RCLKC
Sbjct: 24 GEGPAISSAIDRGDTQTTMPSISNDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCC 81
Query: 102 ECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCF 158
EC L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF
Sbjct: 82 ECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCF 141
Query: 159 ACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
C C + L TGD F M+D + C+ +E+
Sbjct: 142 TCSTCNKMLTTGDHFG-MKDSLVYCRLHFES 171
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D DQ KR RT+ QL T+K + + P +QL
Sbjct: 232 YNAALSCNENDGDHMDRDQSYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 291
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 292 AQKTGLTKRVLQVWFQNARAKFRR 315
>gi|358414621|ref|XP_003582878.1| PREDICTED: LIM homeobox transcription factor 1-beta [Bos taurus]
Length = 315
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 93/170 (54%), Gaps = 34/170 (20%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DY
Sbjct: 24 FAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDY 82
Query: 188 E---------------AAKAKD----------------GNCLDGDQPN--KRPRTTITAK 214
E + K++D G+ DG P KRPRT +T +
Sbjct: 83 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 142
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 143 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 192
>gi|123299964|dbj|BAF45328.1| LIM homeobox protein 2 [Sus scrofa]
Length = 373
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 7/149 (4%)
Query: 45 SSSFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHEC 103
+ + SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 26 APAISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCEC 83
Query: 104 GAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFAC 160
L + CF+++G ++CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 84 KLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTC 143
Query: 161 VMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 144 TTCNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 194 DGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL RV
Sbjct: 250 DAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 309
Query: 248 VQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDS 294
+QVWFQN RAK +R AG+ R G TSP + D D+
Sbjct: 310 LQVWFQNARAKFRRKPLTAGKPR---------GWTSPTEAALQDGDA 347
>gi|301618805|ref|XP_002938795.1| PREDICTED: LIM/homeobox protein Lhx2-like [Xenopus (Silurana)
tropicalis]
Length = 419
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 8/168 (4%)
Query: 28 ICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDRF 84
+ ++H ++ E S + S+ + +D G MP S + C GCG I DR+
Sbjct: 27 LSGGEMHGVIDEMDRRSKNEVSAISSAID-RGETETTMPSISSDRAALCAGCGGKISDRY 85
Query: 85 ILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPP 141
L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 86 YLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISA 145
Query: 142 TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +E
Sbjct: 146 SEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFG-MKDNLVYCRLHFET 192
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQ---PN---KRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D DQ PN KR RT+ QL T+K + + P +QL
Sbjct: 253 YNAALSCNENDGDHMDRDQQYTPNQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 312
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 313 AQKTGLTKRVLQVWFQNARAKFRR 336
>gi|354507888|ref|XP_003515986.1| PREDICTED: LIM homeobox transcription factor 1-beta-like, partial
[Cricetulus griseus]
Length = 243
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 93/170 (54%), Gaps = 34/170 (20%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DY
Sbjct: 44 FAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDY 102
Query: 188 E---------------AAKAKD----------------GNCLDGDQPN--KRPRTTITAK 214
E + K++D G+ DG P KRPRT +T +
Sbjct: 103 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 162
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 163 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 212
>gi|410929509|ref|XP_003978142.1| PREDICTED: LIM/homeobox protein Lhx2-like [Takifugu rubripes]
Length = 417
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 27 GICASKLHDLLHEAH---AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDR 83
G+ +H ++ E S + SS + + E +P + + C GCG I+DR
Sbjct: 26 GLPGGDVHGMVEEMDRRGKSESVAISSVIDMGESETPLPC-LTGERVALCAGCGRKIVDR 84
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF +CA C +GI
Sbjct: 85 YYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGIS 144
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C++ L TGD F M+D + C+ +E
Sbjct: 145 ASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFG-MKDSLVYCRLHFET 192
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 250 YNAALSCNENDGESMDRDSQYSSTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 309
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR--LKKDAGRTRWSQYFRSMKGGT--SPKDEL 288
+Q TGL RV+QVWFQN RAK +R L++++ + +++GGT P E+
Sbjct: 310 AQKTGLTKRVLQVWFQNARAKFRRNLLRQESTGVDKASDSSTLQGGTPSGPASEI 364
>gi|47212495|emb|CAG12709.1| unnamed protein product [Tetraodon nigroviridis]
Length = 285
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 90/166 (54%), Gaps = 33/166 (19%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F TKC+GC I PT+ V RA + VYHLNCF C +C RQL GDEF L E +L+CK DY
Sbjct: 3 FATKCSGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEG-QLLCKFDY 61
Query: 188 EAAK-------------------------------AKDGNCLDGDQPNKRPRTTITAKQL 216
E K K + D +P KRPRT +T +Q
Sbjct: 62 EREKDLLSSVSPDDSDSEKSDDEELDIKQEKGIGQGKGDDSKDSRRP-KRPRTILTTQQR 120
Query: 217 ETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 121 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 166
>gi|312371799|gb|EFR19895.1| hypothetical protein AND_21633 [Anopheles darlingi]
Length = 284
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 90/149 (60%), Gaps = 9/149 (6%)
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKP 185
+ FGTKCA C I T VRRA+DL++HL CFAC C RQL+TG++F L++D K++CK
Sbjct: 45 RTFGTKCARCSRTISATDWVRRARDLIFHLACFACDSCGRQLSTGEQFALVDD-KVLCKT 103
Query: 186 DYE-----AAKAKDGNCLDGDQPN---KRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y + DG DG Q N KR RTT T +QL+ L+ +N P E++
Sbjct: 104 HYSEMFDCGTSSDDGCEADGYQKNSKTKRVRTTFTEEQLQILQANFNIDSNPDGQDLERI 163
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266
+ TGL RV QVWFQN RA++K+ +D
Sbjct: 164 ASVTGLSKRVTQVWFQNSRARQKKHVQDG 192
>gi|193786574|dbj|BAG51357.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 92/147 (62%), Gaps = 7/147 (4%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVM 162
L + CF+++G +CKED+++RF +CA C +GI +++V RA+DLVYHLNCF C
Sbjct: 86 NLESELTCFSKDGSSYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTT 145
Query: 163 CARQLNTGDEFYLMEDRKLVCKPDYEA 189
C + L TGD F M+D + C+ +EA
Sbjct: 146 CNKMLTTGDHFG-MKDSLVYCRLHFEA 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 240 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 300 AQKTGLTKRVLQVWFQNARAKFRR 323
>gi|440910599|gb|ELR60379.1| LIM homeobox transcription factor 1-alpha, partial [Bos grunniens
mutus]
Length = 303
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 87/166 (52%), Gaps = 33/166 (19%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC GC I P + V RAQ VYHL+CF C +C RQL GDEF L E +L+CK DY
Sbjct: 11 FAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDY 69
Query: 188 E-------------------------------AAKAKDGNCLDGDQPNKRPRTTITAKQL 216
E A K + D +P KRPRT +T +Q
Sbjct: 70 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDSKDHKRP-KRPRTILTTQQR 128
Query: 217 ETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 129 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 174
>gi|327291350|ref|XP_003230384.1| PREDICTED: LIM homeobox transcription factor 1-beta-like, partial
[Anolis carolinensis]
Length = 185
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 90/171 (52%), Gaps = 37/171 (21%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DY
Sbjct: 2 FAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKSDY 60
Query: 188 EAAK--------------------------------AKDGNCLDGDQPN--KRPRTTITA 213
E K K G+ DG P KRPRT +T
Sbjct: 61 EKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQTNPGKGGD--DGKDPRRPKRPRTILTT 118
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 119 QQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 169
>gi|148679946|gb|EDL11893.1| LIM homeobox protein 8, isoform CRA_a [Mus musculus]
Length = 291
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 98/168 (58%), Gaps = 17/168 (10%)
Query: 111 CFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTG 170
C+ ++ +FCK D+F+R+GT+C+ C I T VRRA+ VYHL CFAC C RQL+TG
Sbjct: 65 CYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTG 124
Query: 171 DEFYLMEDRKLV-----CKPDYEAAKAKDGNCLDGD------------QPNKRPRTTITA 213
+EF L+E++ L C D + ++GN + + +P KR RT+ TA
Sbjct: 125 EEFALVEEKVLCRVHFDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTA 184
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL+ ++ + P ++L++ TGL RV+QVWFQN RA+ K+
Sbjct: 185 DQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK 232
>gi|402591685|gb|EJW85614.1| hypothetical protein WUBG_03477, partial [Wuchereria bancrofti]
Length = 103
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 75/100 (75%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC + ILDR++ VLE+ WHA C++C +C L+E CF R+GL+ C++DF +R+GT+C
Sbjct: 4 CAGCNNAILDRYVFHVLEKAWHASCIQCADCKELLSETCFTRDGLILCRKDFARRYGTRC 63
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDE 172
AGC MG+ +VRRA+D ++H+ CF C +C ++L+TG++
Sbjct: 64 AGCNMGLDRNDLVRRARDKIFHVQCFQCTVCQKKLDTGEQ 103
>gi|444721284|gb|ELW62028.1| LIM homeobox transcription factor 1-beta [Tupaia chinensis]
Length = 471
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 93/170 (54%), Gaps = 34/170 (20%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DY
Sbjct: 7 FAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDY 65
Query: 188 E---------------AAKAKD----------------GNCLDGDQPN--KRPRTTITAK 214
E + K++D G+ DG P KRPRT +T +
Sbjct: 66 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQNKGSGDDGKDPRRPKRPRTILTTQ 125
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
Q K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 126 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 175
>gi|402581255|gb|EJW75203.1| hypothetical protein WUBG_13886 [Wuchereria bancrofti]
Length = 185
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 77/102 (75%), Gaps = 7/102 (6%)
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
AK+K+ D D KRPRTTI+AK LETLK AY S KPARHVREQL+ DTGLDMRVVQ
Sbjct: 2 AKSKE---TDIDSNTKRPRTTISAKSLETLKQAYQASSKPARHVREQLAADTGLDMRVVQ 58
Query: 250 VWFQNRRAKEKRLKKDAGRTRWSQYF--RSMKGGT-SPKDEL 288
VWFQNRRAKEKRLKKDAGR +W Y +S+ G+ SP D +
Sbjct: 59 VWFQNRRAKEKRLKKDAGR-QWGTYGIPKSLDSGSASPNDSI 99
>gi|348536383|ref|XP_003455676.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Oreochromis
niloticus]
Length = 333
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 129/298 (43%), Gaps = 71/298 (23%)
Query: 21 GNGLTVGICASKLHDLLHEAH--AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGD 78
G L GI + ++ E + + S + E MP P C GCG
Sbjct: 20 GAMLFHGISGDHIQGIMEEMERRSKTESRLAKGMQLNGRESTMPSMSP-EKPALCAGCGG 78
Query: 79 LILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGC 135
I DR+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C
Sbjct: 79 KISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARC 138
Query: 136 EMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK---------PD 186
+GI +++V RA+D VYHL+CF C C + L TGD F M+D + C+ PD
Sbjct: 139 HLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDSLVYCRLHFETLVQGPD 197
Query: 187 YE--------AAKA----------------------------------------KDGNCL 198
Y AAK D + L
Sbjct: 198 YHPQLNFAELAAKGGGLTLPYFNGTGTAQKGRPRKRKSPAMGIDIPSYNTGCNENDTDHL 257
Query: 199 DGD-------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
D D Q KR RT+ QL T+K + + P +QL+Q TGL RV+Q
Sbjct: 258 DRDQQAYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 315
>gi|344271943|ref|XP_003407796.1| PREDICTED: LIM/homeobox protein Lhx2 [Loxodonta africana]
Length = 365
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 71
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +EA
Sbjct: 72 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 130
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 199 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 258
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 259 AQKTGLTKRVLQVWFQNARAKFRR 282
>gi|114626624|ref|XP_528427.2| PREDICTED: LIM/homeobox protein Lhx2 [Pan troglodytes]
Length = 365
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 71
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +EA
Sbjct: 72 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 130
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 199 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 258
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 259 AQKTGLTKRVLQVWFQNARAKFRR 282
>gi|348570106|ref|XP_003470838.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Cavia porcellus]
Length = 404
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 111
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +EA
Sbjct: 112 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 170
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 194 DGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL RV
Sbjct: 248 DAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 307
Query: 248 VQVWFQNRRAKEKR 261
+QVWFQN RAK +R
Sbjct: 308 LQVWFQNARAKFRR 321
>gi|351702111|gb|EHB05030.1| LIM/homeobox protein Lhx2 [Heterocephalus glaber]
Length = 502
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF
Sbjct: 165 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 224
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +EA
Sbjct: 225 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 283
>gi|296190791|ref|XP_002743350.1| PREDICTED: LIM/homeobox protein Lhx2 [Callithrix jacchus]
Length = 365
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 71
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +EA
Sbjct: 72 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 130
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 199 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 258
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 259 AQKTGLTKRVLQVWFQNARAKFRR 282
>gi|348570110|ref|XP_003470840.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 3 [Cavia porcellus]
Length = 404
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 111
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +EA
Sbjct: 112 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 170
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 194 DGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL RV
Sbjct: 248 DAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 307
Query: 248 VQVWFQNRRAKEKR 261
+QVWFQN RAK +R
Sbjct: 308 LQVWFQNARAKFRR 321
>gi|344236825|gb|EGV92928.1| LIM homeobox transcription factor 1-alpha [Cricetulus griseus]
Length = 333
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 89/166 (53%), Gaps = 33/166 (19%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC GC I P + V RAQ VYHL+CF C +C RQL GDEF L E +L+CK DY
Sbjct: 41 FAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDY 99
Query: 188 E---------------AAKAKDGNCL----------------DGDQPNKRPRTTITAKQL 216
E + K+ D L D +P KRPRT +T +Q
Sbjct: 100 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRP-KRPRTILTTQQR 158
Query: 217 ETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 159 RAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 204
>gi|47214973|emb|CAG01307.1| unnamed protein product [Tetraodon nigroviridis]
Length = 396
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 81/120 (67%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I+DR+ L +++ WH RCL+C EC L + CF+++G ++CKED+++RF
Sbjct: 53 CAGCGRKIVDRYYLLAVDKQWHMRCLRCCECKLHLESELTCFSKDGSIYCKEDYYRRFSV 112
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C++ L TGD F M+D + C+ +E
Sbjct: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFG-MKDSLVYCRLHFET 171
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 229 YNAALSCNENDGESMDRDSQYSSTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 288
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR--LKKDAGRTRWSQYFRSMKGGT--SPKDEL 288
+Q TGL RV+QVWFQN RAK +R L++++ + +++GGT P E+
Sbjct: 289 AQKTGLTKRVLQVWFQNARAKFRRNLLRQESSGVDKASDSSTLQGGTPSGPASEI 343
>gi|380027052|ref|XP_003697250.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis florea]
Length = 390
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG I +R+ L+ +R WH CL+C C PLA + CFAR+G ++CKED+++ F
Sbjct: 38 CGGCGREIAERWYLRAADRAWHCGCLRCCHCRVPLAAELTCFARDGNIYCKEDYYRLFAG 97
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
+C+ C GI T++V RA+DLVYH+ CF C C LN GD F D + C+P YE
Sbjct: 98 RCSRCRAGISATELVMRARDLVYHVACFTCASCGTPLNKGDHFG-QRDGLVYCRPHYE 154
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
YEA+ G + Q KR RT+ QL T+K + + P +QL+Q TGL R
Sbjct: 245 YEASVGSPGP-VHQSQRTKRMRTSFKHHQLRTMKNYFAINQNPDAKDLKQLAQKTGLSKR 303
Query: 247 VVQVWFQNRRAKEKR-LKKDAGRTRWSQ 273
V+QVWFQN RAK +R + + G T S
Sbjct: 304 VLQVWFQNARAKWRRNMMRQEGNTTTSN 331
>gi|328787166|ref|XP_003250891.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis mellifera]
Length = 390
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
CGGCG I +R+ L+ +R WH CL+C C PLA + CFAR+G ++CKED+++ F
Sbjct: 38 CGGCGREIAERWYLRAADRAWHCGCLRCCHCRVPLAAELTCFARDGNIYCKEDYYRLFAG 97
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
+C+ C GI T++V RA+DLVYH+ CF C C LN GD ++ D + C+P YE
Sbjct: 98 RCSRCRAGISATELVMRARDLVYHVACFTCASCGTPLNKGD-YFGQRDGLVYCRPHYE 154
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 35/223 (15%)
Query: 84 FILKVLERTWHARCLKCHECGAPLAEKCF--ARNGLLFCKEDF-----FKRFGTKCAGCE 136
+++ + +H C C CG PL + + R+GL++C+ + +G E
Sbjct: 111 LVMRARDLVYHVACFTCASCGTPLNKGDYFGQRDGLVYCRPHYELLCCAGDYGGAATSIE 170
Query: 137 ----MGIPPTQVVRRAQDLVYHLNCFACVMCARQLN------TGDEF-----------YL 175
G+ P A + + V R TG E L
Sbjct: 171 DIGSPGVSPLPAYYSAAEQS-PITSSGTVQKGRPRKRKLSEVTGSELPVTMRLAAGALEL 229
Query: 176 MEDRKLVCKPD----YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPAR 231
+ +L + YEA+ G + Q KR RT+ QL T+K + + P
Sbjct: 230 LHPTELSSSMESLAAYEASVGSPGP-VHQSQRTKRMRTSFKHHQLRTMKNYFAINQNPDA 288
Query: 232 HVREQLSQDTGLDMRVVQVWFQNRRAKEKR-LKKDAGRTRWSQ 273
+QL+Q TGL RV+QVWFQN RAK +R + + G T S
Sbjct: 289 KDLKQLAQKTGLSKRVLQVWFQNARAKWRRNMMRQEGNTTTSN 331
>gi|312370934|gb|EFR19232.1| hypothetical protein AND_22855 [Anopheles darlingi]
Length = 919
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 15/148 (10%)
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE-- 188
+C GC I ++V RA D V+HL CF CV+C +L GD+ Y+++ +L C+PDYE
Sbjct: 47 RCLGCGEKIGADELVMRALDNVFHLKCFICVVCGVRLQKGDQ-YVIKQSQLFCRPDYEKE 105
Query: 189 ----AAKAKDGNC--------LDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ D C +DG + KRPRT +T +Q K +++ SPKP R +RE
Sbjct: 106 VEMFQGYSYDDYCCDDMFQTRIDGRRGPKRPRTILTTQQRRAFKASFDISPKPCRKIREG 165
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
L++DTGL +R+VQVWFQN+RAK K+++K
Sbjct: 166 LAKDTGLSIRIVQVWFQNQRAKMKKIQK 193
>gi|449268581|gb|EMC79437.1| LIM/homeobox protein LMX-1.2, partial [Columba livia]
Length = 291
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 89/169 (52%), Gaps = 33/169 (19%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC+GC I PT+ V RA + VYHL+CF C +C RQL GDEF L E +L+CK DY
Sbjct: 2 FAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEG-QLLCKSDY 60
Query: 188 EAAK------------------------------AKDGNCLDGDQPN--KRPRTTITAKQ 215
E K + DG P KRPRT +T +Q
Sbjct: 61 EKEKDLLSSVSPDDSDSVKSDDEDGDVKPTKGQVNQGKGSDDGKDPRRPKRPRTILTTQQ 120
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 121 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 169
>gi|225543484|ref|NP_001139388.1| apterous [Tribolium castaneum]
gi|224459214|gb|ACN43342.1| apterous b [Tribolium castaneum]
Length = 361
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 77/119 (64%), Gaps = 4/119 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG- 129
C GCG I DR+ L ++R WHA CLKC EC PL + CFAR+G ++CKED+++ F
Sbjct: 30 CAGCGGRIQDRYYLLAVDRQWHASCLKCCECKLPLDTELTCFARDGNIYCKEDYYRMFAV 89
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
T+C C+ GI ++V RA+D VYHL+CF+C C L+ GD F M D + C+P YE
Sbjct: 90 TRCGRCQAGISANELVMRARDSVYHLHCFSCTSCGMPLSKGDHFG-MRDGLIYCRPHYE 147
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 38/238 (15%)
Query: 64 YMPIASIPKCGGC-GDLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFC 120
Y + ++ +CG C + + +++ + +H C C CG PL+ + R+GL++C
Sbjct: 83 YYRMFAVTRCGRCQAGISANELVMRARDSVYHLHCFSCTSCGMPLSKGDHFGMRDGLIYC 142
Query: 121 KEDF-FKRFGTKCAGCEMGI-----PPTQVV-----------RRAQDLVYHLNCFACVMC 163
+ + F EM PP R+ + V C +
Sbjct: 143 RPHYELLDFCDTSDPVEMMFRGSESPPGYFANAAPQHHKGRPRKRKLPVEDRGCGEIPVT 202
Query: 164 ARQ-------LNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQP--NKRPRTTITAK 214
R L GD ME Y+++ + +G QP KR RT+
Sbjct: 203 MRMAAATLEMLQQGDLSSSMESLS------YDSSVTSPASS-NGHQPQRTKRMRTSFKHH 255
Query: 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAGRTR 270
QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R ++++ G+++
Sbjct: 256 QLRTMKTYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRRNIMRQEGGQSQ 313
>gi|410979132|ref|XP_003995940.1| PREDICTED: LIM/homeobox protein Lhx2 [Felis catus]
Length = 484
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CF+++G ++CKED+++RF
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 71
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+DLVYHLNCF C C + L TGD F M+D + C+ +EA
Sbjct: 72 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 130
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 194 DGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRV 247
D LD DQP KR RT+ QL T+K + + P +QL+Q TGL RV
Sbjct: 209 DAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV 268
Query: 248 VQV 250
+QV
Sbjct: 269 LQV 271
>gi|444730606|gb|ELW70984.1| LIM homeobox transcription factor 1-alpha [Tupaia chinensis]
Length = 265
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +I DRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIETSASFSSLLGRAVSPKSV-------CEGCQRVISDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKFDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
YHL+CF C +C RQL GDEF L E +L+CK DYE
Sbjct: 115 YHLSCFCCCVCERQLQKGDEFVLKEG-QLLCKGDYE 149
>gi|258504064|gb|ACV72744.1| MEC-3 [Caenorhabditis remanei]
gi|258504070|gb|ACV72747.1| MEC-3 [Caenorhabditis remanei]
Length = 274
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 58/230 (25%)
Query: 91 RTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQ 149
R++H C+KC C +PLAEKCF +NG ++C + ++K + +CAGC+ G+ PT +V + +
Sbjct: 15 RSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSSHRCAGCKKGVSPTDMVYKLK 74
Query: 150 -DLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV--------------CKPD-------- 186
LV+H+ C C +C R L+ G++ L++D + C P
Sbjct: 75 AGLVFHVECHCCSLCGRHLSPGEQI-LVDDTMMTVSCMTHYPPQMDDSCGPPAGASEVPS 133
Query: 187 -------------------YEAAKAKDGN------------CLDGDQPNKRPRTTITAK- 214
++ K D C D + KR T K
Sbjct: 134 CSSDSAIAPYPMDEGFPSAFQVKKEVDAYGYNFEHYSFSDFCDDDSRMLKRRGPRTTIKQ 193
Query: 215 -QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263
QL+ L ++ +PKP++H R +L+ +TGL MRV+QVWFQNRR+KE+RLK
Sbjct: 194 NQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQNRRSKERRLK 243
>gi|76667074|dbj|BAE45356.1| LIM homeodomain type transcription factor Lhx2 [Danio rerio]
Length = 395
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 27 GICASKLHDLLHEAH---AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDR 83
G+ ++H ++ E S++ SS+ + + E MP + + C GCG I DR
Sbjct: 5 GLPGGEMHGVMEEMERRGKSDSATISSAIDMGETETNMPS-ISGDRVALCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CF ++G ++CKE++++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHMRCLKCCECKLNLESELTCFDKDGSIYCKEEYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+DLVYHLNCF C C + L TGD M+D + C+ +E
Sbjct: 124 ASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHVG-MKDSLVYCRLHFET 171
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGD------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA DG+ +D D Q KR RT+ QL T+K + + P +QL
Sbjct: 228 YNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 287
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 288 AQKTGLTKRVLQVWFQNARAKFRR 311
>gi|13516919|dbj|BAB40339.1| islet [Halocynthia roretzi]
Length = 432
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 70 IPKCGGCGDLILDRFILKVLER-TWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFK 126
+P C GCG I D+++L+V WHA CLKC +CG L E CF R+G +CK+D+
Sbjct: 22 VPLCVGCGTPIQDQYMLRVAPNLEWHAGCLKCADCGLHLDESRTCFVRDGKTYCKQDYIM 81
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C +G V RA++ +YH+ CF CV C++QL GDEF L ED L CK D
Sbjct: 82 LFGTKCNKCGLGFTKNDFVMRARNKIYHIECFKCVACSKQLIPGDEFALRED-GLFCKAD 140
Query: 187 YEAAKAKDGNCLDGD 201
++ + NCL GD
Sbjct: 141 HDVVER---NCLVGD 152
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 7/197 (3%)
Query: 72 KCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKRF 128
KC CG + F+++ + +H C KC C L ++ R LFCK D
Sbjct: 86 KCNKCGLGFTKNDFVMRARNKIYHIECFKCVACSKQLIPGDEFALREDGLFCKADHDVVE 145
Query: 129 GTKCAGCEMGIPPTQVVRRAQDL----VYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
G + + R + + N + VM G ++
Sbjct: 146 RNCLVGDVLSLSNGNDHRMTNGMSPMSMQSGNVLSPVMGGVGPPVGHMGGMVNGGTPGGT 205
Query: 185 PDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLD 244
+ G D R RT + KQL TL+ Y +P+P ++EQL + T L
Sbjct: 206 SSSSGGSSGGGRRSHKDPKTTRVRTVLNEKQLHTLRTCYGANPRPDALMKEQLVEMTALS 265
Query: 245 MRVVQVWFQNRRAKEKR 261
RV++VWFQN+R K+K+
Sbjct: 266 PRVIRVWFQNKRCKDKK 282
>gi|330858350|gb|AEC46867.1| LIM homeobox 1 protein [Coturnix japonica]
Length = 151
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 85/149 (57%), Gaps = 45/149 (30%)
Query: 152 VYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY------------------------ 187
V+HLNCF C+MC ++L+TG+E Y++++ K VCK DY
Sbjct: 3 VFHLNCFTCMMCNKRLSTGEELYIIDENKFVCKEDYLNNSNTAKENSLHSATTGSDPSLS 62
Query: 188 --------------EAAKAKD---GNCLDGDQ----PNKRPRTTITAKQLETLKMAYNTS 226
E+A D G+ + DQ + PRTTI AKQLETLK A+ +
Sbjct: 63 PDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAAT 122
Query: 227 PKPARHVREQLSQDTGLDMRVVQVWFQNR 255
PKPARH+REQL+Q+TGL+MRV+QVWFQNR
Sbjct: 123 PKPARHIREQLAQETGLNMRVIQVWFQNR 151
>gi|402580740|gb|EJW74689.1| hypothetical protein WUBG_14403, partial [Wuchereria bancrofti]
Length = 126
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 78/109 (71%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
++ C C + I DRF+LKVL+R++H CL+C C L+ KC+ + G +CK+ F+K+
Sbjct: 12 GTVYLCSKCEEPIRDRFVLKVLDRSFHPHCLRCVYCEQLLSSKCYLKGGQPYCKDHFYKQ 71
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLM 176
FGTKC+ C+ GI P VVRRA + VYH++CF C++C R+L TG+EFYL+
Sbjct: 72 FGTKCSMCDEGICPDMVVRRANEHVYHVSCFQCIICKRELRTGEEFYLI 120
>gi|117306370|gb|AAI26705.1| LHX9 protein [Bos taurus]
Length = 388
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|345132129|gb|AEN75257.1| apterous [Neanthes arenaceodentata]
Length = 420
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 39 EAHAGSSSSFSS-SFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARC 97
E A FS +F + E MPV C GCG I+DR+ L +++ WH C
Sbjct: 26 EERASEGIPFSGDAFPSSNAEQTMPVVAGEVEPAPCAGCGGKIIDRYYLLAVDKQWHINC 85
Query: 98 LKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGTK-CAGCEMGIPPTQVVRRAQDLVYH 154
LKC +C PL + CFA++G +FCKED+++RF K C+ C I ++V RA++ V+H
Sbjct: 86 LKCADCHLPLDSELTCFAKDGEIFCKEDYYRRFAVKRCSRCHQAISANELVMRAREHVFH 145
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
+ CF C C++ L TGD ++ M+D + C+ YE
Sbjct: 146 IGCFTCASCSKALTTGD-YFGMKDHLIYCRSHYE 178
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--L 262
KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R L
Sbjct: 283 KRVRTSFKHHQLRTMKSYFALNHNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKYRRNVL 342
Query: 263 KKDAGRTR 270
K+ +R
Sbjct: 343 KQQGDPSR 350
>gi|66792874|ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]
gi|61555226|gb|AAX46681.1| LIM homeobox 9 [Bos taurus]
gi|296478851|tpg|DAA20966.1| TPA: LIM/homeobox protein Lhx9 [Bos taurus]
Length = 378
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 188
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 246 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 305
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 306 NLLRQENG 313
>gi|335296201|ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa]
Length = 388
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|348578262|ref|XP_003474902.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cavia
porcellus]
Length = 388
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 17/246 (6%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
+ C+ +E L G+ P + T + AK +L + Y + R +
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAKS-GSLALPYFNGTGTVQKGRPRKR 221
Query: 239 QDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFSH 298
+ L + +V + L +D SQ + M+ TS K + S F+
Sbjct: 222 KSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMR--TSFKHHQLRTMKSYFAI 279
Query: 299 SHGKTA 304
+H A
Sbjct: 280 NHNPDA 285
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|348578264|ref|XP_003474903.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Cavia
porcellus]
Length = 321
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 17/246 (6%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
+ C+ +E L G+ P + T + AK +L + Y + R +
Sbjct: 170 SLVYCRAHFETL-------LQGEYPPQLSYTELAAKS-GSLALPYFNGTGTVQKGRPRKR 221
Query: 239 QDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFSH 298
+ L + +V + L +D SQ + M+ TS K + S F+
Sbjct: 222 KSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMR--TSFKHHQLRTMKSYFAI 279
Query: 299 SHGKTA 304
+H A
Sbjct: 280 NHNPDA 285
>gi|123907024|sp|Q1LWV4.1|LHX9_DANRE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|94732381|emb|CAK04966.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
rerio]
gi|190339118|gb|AAI63023.1| Lhx9 protein [Danio rerio]
gi|190339147|gb|AAI63060.1| Lhx9 protein [Danio rerio]
gi|190339149|gb|AAI63073.1| Lhx9 protein [Danio rerio]
Length = 396
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 27 GICASKLHDLLHEAH--AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRF 84
GI + ++ E + S S + + E MP P C GCG I DR+
Sbjct: 24 GISGDHIQGIMEEMERRSKSESRLAKTVQMNGRETTMPSMSP-EKPALCAGCGGKISDRY 82
Query: 85 ILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPP 141
L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 83 YLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISA 142
Query: 142 TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+D VYHL+CF C C + L TGD F M+D + C+ +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDNLVYCRVHFET 189
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NVLRQENG 332
>gi|62241033|ref|NP_001014434.1| LIM/homeobox protein Lhx9 isoform 2 [Homo sapiens]
gi|114571650|ref|XP_525011.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 6 [Pan troglodytes]
gi|297281170|ref|XP_001110674.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Macaca mulatta]
gi|395729258|ref|XP_002809704.2| PREDICTED: LIM/homeobox protein Lhx9 [Pongo abelii]
gi|397505118|ref|XP_003823120.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan paniscus]
gi|402857736|ref|XP_003893401.1| PREDICTED: LIM/homeobox protein Lhx9 [Papio anubis]
gi|426333155|ref|XP_004028150.1| PREDICTED: LIM/homeobox protein Lhx9 [Gorilla gorilla gorilla]
gi|9367761|emb|CAB97493.1| LIM-homeobox 9 [Homo sapiens]
gi|119611697|gb|EAW91291.1| LIM homeobox 9, isoform CRA_e [Homo sapiens]
Length = 388
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|296230329|ref|XP_002760660.1| PREDICTED: LIM/homeobox protein Lhx9 [Callithrix jacchus]
Length = 388
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|403307414|ref|XP_003944190.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 388
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|348578260|ref|XP_003474901.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cavia
porcellus]
Length = 397
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 17/246 (6%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
+ C+ +E L G+ P + T + AK +L + Y + R +
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAKS-GSLALPYFNGTGTVQKGRPRKR 230
Query: 239 QDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFSH 298
+ L + +V + L +D SQ + M+ TS K + S F+
Sbjct: 231 KSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMR--TSFKHHQLRTMKSYFAI 288
Query: 299 SHGKTA 304
+H A
Sbjct: 289 NHNPDA 294
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|149743835|ref|XP_001492921.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Equus caballus]
Length = 388
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|119611694|gb|EAW91288.1| LIM homeobox 9, isoform CRA_b [Homo sapiens]
Length = 378
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 188
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 246 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 305
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 306 NLLRQENG 313
>gi|345803062|ref|XP_857156.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 4 [Canis lupus
familiaris]
Length = 380
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 188
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C L + ++ L++C+ F
Sbjct: 110 SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 170 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 222
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 223 YNSALGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 282
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 283 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 315
>gi|198437781|ref|XP_002124033.1| PREDICTED: transcription factor protein [Ciona intestinalis]
Length = 402
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 124/278 (44%), Gaps = 49/278 (17%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFFKR 127
+ KC GC +ILDR L V + WH CLKC C PL + CF ++ ++C+ D+ +
Sbjct: 36 VQKCAGCHQVILDRSYLFVEDSYWHMGCLKCCACAQPLDNSRTCFVKDTRVYCRNDYKRL 95
Query: 128 FGTK-CAGCEMGIPPTQVVRRAQDLVYHLN--CFACVMCARQLNTGDEFYLMEDRKLVCK 184
FG++ C C + I P ++V R D VYH N CF+C C R TG EF + LVC
Sbjct: 96 FGSQLCTHCGVFIEPHELVMRVHDRVYHANYKCFSCCSCQRPFTTGQEFVEVAP-NLVCM 154
Query: 185 PDYEAAKAKDGNCLDGDQP----------------------------------------- 203
E + + ++ +P
Sbjct: 155 DCCERESSSEYFDINLHKPGRPKKRKAIMTSSHLDSIGGMAVNYVTEEIRSDTERMNFPP 214
Query: 204 --NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+KR RT+ QL +K ++ + P +QL+Q+TGL RV+QVWFQN RAK +R
Sbjct: 215 HKSKRMRTSFKHHQLRAMKAYFHQNHNPDAKDLKQLAQETGLTKRVLQVWFQNARAKYRR 274
Query: 262 LKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFSHS 299
+ T S S T ++++ DSN S S
Sbjct: 275 GRAQNKTTNQSFTKGSGSDVTKSENDVTTQQDSNCSDS 312
>gi|449268141|gb|EMC79011.1| LIM/homeobox protein Lhx9 [Columba livia]
Length = 378
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E+ L G+ P + T + AK
Sbjct: 160 NLVYCRAHFES-------LLQGEYPPQLSYTELAAK 188
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 19/211 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ E +H C C C L + ++ L++C+ F
Sbjct: 110 SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 169
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--D 178
+ PP T++ ++ L + N V R ++ +
Sbjct: 170 SLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 222
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
C + +D Q KR RT+ QL T+K + + P +QL+
Sbjct: 223 YNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLA 282
Query: 239 QDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 283 QKTGLTKRVLQVWFQNARAKFRRNLLRQENG 313
>gi|444717046|gb|ELW57882.1| LIM/homeobox protein Lhx9 [Tupaia chinensis]
Length = 378
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 188
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 246 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 305
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 306 NLLRQENG 313
>gi|115727487|ref|XP_782032.2| PREDICTED: LIM/homeobox protein Lhx9 [Strongylocentrotus
purpuratus]
Length = 474
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DRF L +R WH +CL+C EC L + CFA+ G ++CKED+ KR+G
Sbjct: 54 CAGCGGRICDRFYLLAADRQWHTQCLQCCECNVQLDSELSCFAKEGNIYCKEDYLKRYGI 113
Query: 131 K-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
K CA C +GI ++V RA++LVYHL CF+C +C +L+TGD +Y M + + C+ YE
Sbjct: 114 KKCARCHVGIESHEMVMRARELVYHLACFSCAVCNLELHTGD-YYGMRENLVYCQLHYET 172
Query: 190 --AKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPA 230
+ D + P T L + SP PA
Sbjct: 173 LFVPSSDQSTYHHLHHASPPPPQPTLHNLSPSYHTHGGSPNPA 215
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR--L 262
KR RT+ QL T+K + + P +QL+ TGL RV+QVWFQN RAK +R
Sbjct: 283 KRMRTSFKHHQLRTMKSYFAMNHNPDAKDLKQLAHKTGLTKRVLQVWFQNARAKYRRTST 342
Query: 263 KKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFS 297
KKD + S+ S G P ++D N S
Sbjct: 343 KKDDEK---SEKNASECDGDQPSPSTQVDDQDNIS 374
>gi|224471838|sp|A0JNI8.2|LHX9_BOVIN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|110665672|gb|ABG81482.1| LIM homeobox 9 [Bos taurus]
Length = 397
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|449268603|gb|EMC79459.1| LIM/homeobox protein Lhx6, partial [Columba livia]
Length = 263
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 34/188 (18%)
Query: 93 WHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQD 150
WH RCL+C C L ++ C+ +N +FCK D+F RFGTKCA C I
Sbjct: 9 WHVRCLECSVCRTSLRQQQSCYIKNKEIFCKMDYFSRFGTKCARCGRQI----------- 57
Query: 151 LVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE--------AAKAKDGNCLDG-- 200
+ + FAC C RQL+TG+EF L+E+ K++C+ Y+ AA+ +G L+G
Sbjct: 58 ---YASDFACFTCKRQLSTGEEFGLVEE-KVLCRIHYDTMIENLKRAAENGNGITLEGAV 113
Query: 201 -------DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253
+P KR RTT TA+QL+ ++ + P ++L+ TGL RV+QVWFQ
Sbjct: 114 PSEQDSQPKPAKRARTTFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQ 173
Query: 254 NRRAKEKR 261
N RA+ K+
Sbjct: 174 NCRARHKK 181
>gi|311213854|ref|NP_001185656.1| LIM homeobox 9 [Taeniopygia guttata]
Length = 378
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E+ L G+ P + T + AK
Sbjct: 160 NLVYCRAHFES-------LLQGEYPPQLSYTELAAK 188
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 246 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 305
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 306 NLLRQENG 313
>gi|291402696|ref|XP_002717724.1| PREDICTED: LIM homeobox protein 9-like isoform 2 [Oryctolagus
cuniculus]
Length = 388
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|31077136|ref|NP_852032.1| LIM/homeobox protein Lhx9 [Rattus norvegicus]
gi|81895227|sp|Q80W90.1|LHX9_RAT RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|30525882|gb|AAP32472.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 388
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|440904877|gb|ELR55334.1| LIM/homeobox protein Lhx9 [Bos grunniens mutus]
Length = 397
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|371573884|gb|AEX38312.1| Lhx1 [Mnemiopsis leidyi]
Length = 424
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I D+F++KVL++TWH+ CL C +CG LA++CF RNG +C +DF K + C
Sbjct: 5 CAGCNGKIHDKFLMKVLDKTWHSECLVCVDCGVVLADQCFTRNGKFYCSKDFEKSQASSC 64
Query: 133 AGCEMGIPPTQVVRRAQDLV--YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
C+ I P ++ + + V +H+ CF C C+RQL G+EFY ++++K +C D++
Sbjct: 65 GACKKDITPDDMILKPPNTVGMFHVKCFTCSKCSRQLEAGEEFYTIDNKKFLCSRDFKNH 124
Query: 191 KA 192
++
Sbjct: 125 RS 126
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 2/67 (2%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK--K 264
PRTTI +KQL+ LK A+ ++ KP R++REQL+ +TGL+MRV+QVWFQNRR+KE+R+ K
Sbjct: 249 PRTTIKSKQLDILKAAFKSNQKPTRNIREQLATETGLNMRVIQVWFQNRRSKERRMTQMK 308
Query: 265 DAGRTRW 271
A R R+
Sbjct: 309 LANRGRY 315
>gi|344276910|ref|XP_003410248.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Loxodonta africana]
Length = 380
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 188
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C L + ++ L++C+ F
Sbjct: 110 SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 170 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDMVN 222
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 223 YNSALCCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 282
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 283 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 315
>gi|293339636|gb|ADE44110.1| tailup [Megaselia abdita]
Length = 348
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 103/224 (45%), Gaps = 47/224 (20%)
Query: 85 ILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFKRFGTKCAGCEMGIPP 141
IL+V + WHA CLKC EC L E C F R+G +CK D+ + F KC C
Sbjct: 1 ILRVAPDLEWHAACLKCTECRQYLDENCTCFVRDGKTYCKRDYVRLFRAKCDKCGNSFSR 60
Query: 142 TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY-------------- 187
V RA+ ++H++CF C CA QL G EF L + L CK D+
Sbjct: 61 NDYVMRARTKIFHMDCFRCNTCAIQLKPGQEFALRDGGVLYCKEDHDILEKSHSQTNISS 120
Query: 188 ----------------EAAKAKDGNCLDGDQPN---KRP-----------RTTITAKQLE 217
E D G + KRP RT + KQL
Sbjct: 121 IETNNNTNLNNNNHSSELGSLSDSGSESGSHKSIREKRPSGPSDGKPTRVRTVLNEKQLH 180
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TL+ YN +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 181 TLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 224
>gi|348536385|ref|XP_003455677.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Oreochromis
niloticus]
Length = 320
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 127/297 (42%), Gaps = 70/297 (23%)
Query: 21 GNGLTVGICASKLHDLLHEAH--AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGD 78
G L GI + ++ E + + S + E MP P C GCG
Sbjct: 20 GAMLFHGISGDHIQGIMEEMERRSKTESRLAKGMQLNGRESTMPSMSP-EKPALCAGCGG 78
Query: 79 LILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGTKCAGCE 136
I DR+ L +++ WH RCLKC EC L + CFA++G ++CKED+++ +CA C
Sbjct: 79 KISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRFSVQRCARCH 138
Query: 137 MGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK---------PDY 187
+GI +++V RA+D VYHL+CF C C + L TGD F M+D + C+ PDY
Sbjct: 139 LGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDSLVYCRLHFETLVQGPDY 197
Query: 188 E--------AAKA----------------------------------------KDGNCLD 199
AAK D + LD
Sbjct: 198 HPQLNFAELAAKGGGLTLPYFNGTGTAQKGRPRKRKSPAMGIDIPSYNTGCNENDTDHLD 257
Query: 200 GD-------QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
D Q KR RT+ QL T+K + + P +QL+Q TGL RV+Q
Sbjct: 258 RDQQAYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 314
>gi|6754542|ref|NP_034844.1| LIM/homeobox protein Lhx9 isoform b [Mus musculus]
gi|6179608|emb|CAB59907.1| putative LIM-homeodomain alpha isoform [Mus musculus]
gi|148707590|gb|EDL39537.1| LIM homeobox protein 9, isoform CRA_b [Mus musculus]
Length = 321
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 198
>gi|354485100|ref|XP_003504722.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cricetulus
griseus]
gi|118763751|gb|AAI28723.1| Lhx9 protein [Rattus norvegicus]
Length = 321
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 198
>gi|291402698|ref|XP_002717725.1| PREDICTED: LIM homeobox protein 9-like isoform 3 [Oryctolagus
cuniculus]
Length = 321
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 198
>gi|45382197|ref|NP_990757.1| LIM/homeobox protein Lhx9 [Gallus gallus]
gi|556038|gb|AAA50258.1| homeobox protein [Gallus gallus]
Length = 378
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E+ L G+ P + T + AK
Sbjct: 160 NLVYCRAHFES-------LLQGEYPPQLSYTELAAK 188
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 19/211 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ E +H C C C L + ++ L++C+ F
Sbjct: 110 SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 169
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--D 178
+ PP T++ ++ L + N V R ++ +
Sbjct: 170 SLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 222
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
C + +D Q KR T+ QL T+K + + P +QL+
Sbjct: 223 YNSGCNENEADHMDRDQQPYPPSQKTKRMATSFKHHQLRTMKSYFAINHNPDAKDLKQLA 282
Query: 239 QDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 283 QKTGLTKRVLQVWFQNARAKFRRNLLRQENG 313
>gi|432887976|ref|XP_004075005.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 366
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 111/212 (52%), Gaps = 26/212 (12%)
Query: 73 CGGCGDLILDRFILKVLERTW-----HARCLKCHECGAPLAEKCFARNGLL-FCKEDFFK 126
C CG ILDR++LK E W H E A A +G + +
Sbjct: 86 CASCGLEILDRYLLK--EWGWDYVSLHGGGAGGGEQDRAPAVPLKAMSGFGGLISDTYMG 143
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+
Sbjct: 144 RFGTKCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEE-KVLCRIH 202
Query: 187 YE--------AAKAKDGNCLDG---------DQPNKRPRTTITAKQLETLKMAYNTSPKP 229
Y+ AA++ +G L+G +P KR RT+ TA+QL+ ++ + P
Sbjct: 203 YDTMVENLKRAAESGNGITLEGAVPTEQDSQPKPAKRARTSFTAEQLQIMQAQFAQDNNP 262
Query: 230 ARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 263 DAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 294
>gi|119611698|gb|EAW91292.1| LIM homeobox 9, isoform CRA_f [Homo sapiens]
Length = 321
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 198
>gi|148707589|gb|EDL39536.1| LIM homeobox protein 9, isoform CRA_a [Mus musculus]
Length = 342
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 198
>gi|126306417|ref|XP_001367814.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Monodelphis
domestica]
Length = 380
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 NLVYCRAHFET-------LLQGEYPPQLSYTELAAK 188
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ E +H C C C L + ++ L++C+ F
Sbjct: 110 SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 169
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 170 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 222
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ +L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 223 YNSELSCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 282
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 283 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 315
>gi|46276325|gb|AAS86421.1| lhx9 [Oryzias latipes]
Length = 237
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 110/237 (46%), Gaps = 67/237 (28%)
Query: 88 VLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVV 145
+++ WH RCLKC EC L + CFA++G ++CKED+++ +CA C +GI +++V
Sbjct: 2 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRFSVQRCARCHLGISASEMV 61
Query: 146 RRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK---------PDYE-------- 188
RA+D VYHL+CF C C + L TGD F M+D + C+ PDY
Sbjct: 62 MRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDSLVYCRLHFETLVQGPDYHPQLNFAEL 120
Query: 189 AAKA----------------------------------------KDGNCLDGD------- 201
AAK D + LD D
Sbjct: 121 AAKGGGLALPYFNGTGTTQKGRPRKRKSPAMGIDIPSYNTGCNENDTDHLDRDQQAYPPT 180
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK
Sbjct: 181 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK 237
>gi|47223723|emb|CAF99332.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE--KCFARNGLLFCKEDFFKRFGT 130
C CG ILDR++LKV WH RCL+C C L + C+ +N +FCK D+F RFGT
Sbjct: 46 CASCGQEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYFSRFGT 105
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
KCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++C+ Y+
Sbjct: 106 KCARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEE-KVLCRIHYDT 163
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+ I+A+ ++ ++ + P ++L+ TGL RV+QVWFQN RA+ K+
Sbjct: 257 SQISAQNMQIMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 309
>gi|6180222|emb|CAB59909.1| putative LIM homeodomain protein [Mus musculus]
Length = 299
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 29 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 88
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 89 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 147
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 148 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 176
>gi|215276334|gb|ACJ65031.1| LHX9 [Xenopus laevis]
Length = 399
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 8/168 (4%)
Query: 27 GICASKLHDLLHEAHAGSSSS---FSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDR 83
GI + ++ E S S+ + S E MP P C GCG I DR
Sbjct: 25 GITGGHIQGIMEEMERRSKSADSRLAKSIQVNSRETRMPTLNPEKPT-LCAGCGGKISDR 83
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGTK-CAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF K CA C +GI
Sbjct: 84 YYLLAVDKQWHLRCLKCCECKLTLESELTCFAKDGSIYCKEDYYRRFSVKRCARCHLGIS 143
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
+++V RA++ VYHL+CF C C + L+TGD+F + E+ + C+ +E
Sbjct: 144 ASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENL-VYCRIHFE 190
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 267 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 326
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 327 NLLRQENG 334
>gi|335296199|ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa]
Length = 399
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 207
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C L + ++ L++C+ F
Sbjct: 129 SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 189 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 241
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 242 YNSALCCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 301
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 302 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 334
>gi|395531047|ref|XP_003767594.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Sarcophilus
harrisii]
Length = 380
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 NLVYCRAHFET-------LLQGEYPPQLSYTELAAK 188
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ E +H C C C L + ++ L++C+ F
Sbjct: 110 SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 169
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 170 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 222
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 223 YNSGLSCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 282
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 283 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 315
>gi|308220074|gb|ADO22609.1| LIM class homeobox transcription factor Lhx1.5 [Mnemiopsis leidyi]
Length = 288
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I D+F++KVL++TWH+ CL C +CG LA++CF RNG +C +DF K + C
Sbjct: 5 CAGCNGKIHDKFLMKVLDKTWHSECLVCVDCGVVLADQCFTRNGKFYCSKDFEKSQASSC 64
Query: 133 AGCEMGIPPTQVVRRAQDLV--YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190
C+ I P ++ + + V +H+ CF C C+RQL G+EFY ++++K +C D++
Sbjct: 65 GACKKDITPDDMILKPPNTVGMFHVKCFTCSKCSRQLEAGEEFYTIDNKKFLCSRDFKNH 124
Query: 191 KA 192
++
Sbjct: 125 RS 126
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 46/53 (86%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259
PRTTI +KQL+ LK A+ ++ KP R++REQL+ +TGL+MRV+QVWFQNRR+K+
Sbjct: 213 PRTTIKSKQLDILKAAFKSNQKPTRNIREQLATETGLNMRVIQVWFQNRRSKD 265
>gi|4809142|gb|AAD30110.1|AF134761_1 LIM-homeodomain type transcription factor Lhx9 [Mus musculus]
Length = 300
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 198
>gi|344254817|gb|EGW10921.1| LIM/homeobox protein Lhx9 [Cricetulus griseus]
Length = 311
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 160 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 188
>gi|170034026|ref|XP_001844876.1| LIM/homeobox protein Awh [Culex quinquefasciatus]
gi|167875284|gb|EDS38667.1| LIM/homeobox protein Awh [Culex quinquefasciatus]
Length = 198
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 88/142 (61%), Gaps = 9/142 (6%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C I P+ VR+A+DLV+HL CF+C C RQL+TG++F L++D K++CK Y
Sbjct: 4 FGAKCSKCSRSIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDD-KVMCKIHY 62
Query: 188 -----EAAKAKDGNC-LDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
EA+ + D C DG N KR RTT T +QL L+ + P E+++Q
Sbjct: 63 QDTGDEASNSSDDGCSTDGFNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLERIAQ 122
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 123 LTGLSKRVTQVWFQNSRARQKK 144
>gi|157137279|ref|XP_001663969.1| arrowhead [Aedes aegypti]
gi|108869747|gb|EAT33972.1| AAEL013765-PA [Aedes aegypti]
Length = 201
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 8/146 (5%)
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
++ + FG KC+ C I P+ VR+A+DLV+HL CF+C C RQL+TG++F L++D K++
Sbjct: 4 NYLQTFGAKCSKCSRTIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDD-KVM 62
Query: 183 CKPDY-----EAAKAKDGNCLDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVRE 235
CK Y ++ + DG DG N KR RTT T +QL L+ + P E
Sbjct: 63 CKIHYMDNADDSNSSDDGCSTDGFNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLE 122
Query: 236 QLSQDTGLDMRVVQVWFQNRRAKEKR 261
+++Q TGL RV QVWFQN RA++K+
Sbjct: 123 RIAQLTGLSKRVTQVWFQNSRARQKK 148
>gi|356577835|ref|XP_003557027.1| PREDICTED: insulin gene enhancer protein isl-1-like, partial
[Glycine max]
Length = 289
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 104/236 (44%), Gaps = 56/236 (23%)
Query: 70 IPKCGGCGDLILDRFILKVL-ERTWHARCLKCHECGAPLAEKC--FARNGLLFCKEDFFK 126
+ C GCG I D++IL+V + WHA CLKC EC L E C F R+G +CK D+ +
Sbjct: 4 LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVR 63
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
FGTKC C V RA+ ++H+ CF C CARQL GDEF L + L CK D
Sbjct: 64 LFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSSCARQLLPGDEFALRDGGALYCKED 123
Query: 187 Y---------------------------------------EAAKAKDGNCLDGDQPN--- 204
+ E D G +
Sbjct: 124 HDMLEKSSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRE 183
Query: 205 KRP-----------RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
KRP RT + KQL TL+ YN +P+P ++EQL + TGL RV++
Sbjct: 184 KRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 239
>gi|395838925|ref|XP_003792355.1| PREDICTED: LIM/homeobox protein Lhx9 [Otolemur garnettii]
Length = 397
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|170034028|ref|XP_001844877.1| arrowhead [Culex quinquefasciatus]
gi|167875285|gb|EDS38668.1| arrowhead [Culex quinquefasciatus]
Length = 213
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 88/142 (61%), Gaps = 9/142 (6%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FG KC+ C I P+ VR+A+DLV+HL CF+C C RQL+TG++F L++D K++CK Y
Sbjct: 21 FGAKCSKCSRSIAPSDWVRKARDLVFHLACFSCDTCGRQLSTGEQFALIDD-KVMCKIHY 79
Query: 188 -----EAAKAKDGNC-LDGDQPN--KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQ 239
EA+ + D C DG N KR RTT T +QL L+ + P E+++Q
Sbjct: 80 QDTGDEASNSSDDGCSTDGFNKNKSKRVRTTFTEEQLHILQANFQIDSNPDGQDLERIAQ 139
Query: 240 DTGLDMRVVQVWFQNRRAKEKR 261
TGL RV QVWFQN RA++K+
Sbjct: 140 LTGLSKRVTQVWFQNSRARQKK 161
>gi|431898835|gb|ELK07205.1| LIM homeobox transcription factor 1-beta, partial [Pteropus alecto]
Length = 291
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKC 132
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ + F KC
Sbjct: 10 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 69
Query: 133 AGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191
+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK DYE K
Sbjct: 70 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGDYEKEK 127
>gi|62955397|ref|NP_001017710.1| LIM/homeobox protein Lhx9 isoform 1 [Danio rerio]
gi|62205415|gb|AAH93258.1| LIM homeobox 9 [Danio rerio]
Length = 330
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 27 GICASKLHDLLHEAH--AGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRF 84
GI + ++ E + S S + + E MP P C GCG I DR+
Sbjct: 24 GISGDHIQGIMEEMERRSKSESRLAKTVQMNGRETTMPSMSP-ERPALCAGCGGKISDRY 82
Query: 85 ILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIPP 141
L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 83 YLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISA 142
Query: 142 TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+++V RA+D VYHL+CF C C + L TGD F M+D + C+ +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFG-MKDNLVYCRVHFET 189
>gi|6180221|emb|CAB59908.1| putative LIM homeodomain protein [Mus musculus]
Length = 366
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 29 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 88
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 89 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 147
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 148 SLVYCRAHFET-------LLQGEYPPQLSYTELAAK 176
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 234 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 293
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 294 NLLRQENG 301
>gi|33569216|ref|NP_064589.2| LIM/homeobox protein Lhx9 isoform 1 [Homo sapiens]
gi|73960328|ref|XP_848787.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Canis lupus
familiaris]
gi|332230752|ref|XP_003264559.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Nomascus
leucogenys]
gi|224471883|sp|Q9NQ69.3|LHX9_HUMAN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|33416232|gb|AAP32471.2| LIM-homeobox 9 protein [Homo sapiens]
gi|119611696|gb|EAW91290.1| LIM homeobox 9, isoform CRA_d [Homo sapiens]
gi|124297089|gb|AAI31623.1| LIM homeobox 9 [Homo sapiens]
gi|355558916|gb|EHH15696.1| hypothetical protein EGK_01820 [Macaca mulatta]
gi|355746065|gb|EHH50690.1| hypothetical protein EGM_01558 [Macaca fascicularis]
Length = 397
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|403307412|ref|XP_003944189.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 399
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C L + ++ L++C+ F
Sbjct: 129 SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 189 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 241
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 242 YNSGLSCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 301
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 302 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 334
>gi|351708127|gb|EHB11046.1| LIM/homeobox protein Lhx9 [Heterocephalus glaber]
Length = 397
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|397505116|ref|XP_003823119.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Pan paniscus]
gi|441624364|ref|XP_004088986.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Nomascus
leucogenys]
Length = 399
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C L + ++ L++C+ F
Sbjct: 129 SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 189 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 241
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 242 YNSGLSCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 301
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 302 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 334
>gi|114571656|ref|XP_001139158.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan troglodytes]
Length = 399
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 207
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C L + ++ L++C+ F
Sbjct: 129 SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--- 177
+ PP T++ ++ L + N V R ++
Sbjct: 189 TLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 241
Query: 178 -DRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+ L C + +D Q KR RT+ QL T+K + + P +Q
Sbjct: 242 YNSALCCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQ 301
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
L+Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 302 LAQKTGLTKRVLQVWFQNARAKFRRNLLRQENG 334
>gi|29570244|gb|AAO85392.1| LIM-homeobox protein 9 [Sus scrofa]
Length = 369
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|126306415|ref|XP_001367775.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Monodelphis
domestica]
gi|395531045|ref|XP_003767593.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sarcophilus
harrisii]
Length = 321
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 170 NLVYCRAHFETL-------LQGEYPPQLSYTELAAK 198
>gi|291402694|ref|XP_002717723.1| PREDICTED: LIM homeobox protein 9-like isoform 1 [Oryctolagus
cuniculus]
Length = 397
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|326924940|ref|XP_003208680.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Meleagris
gallopavo]
Length = 338
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 1 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 60
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 61 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 119
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E+ L G+ P + T + AK
Sbjct: 120 NLVYCRAHFESL-------LQGEYPPQLSYTELAAK 148
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 19/211 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ E +H C C C L + ++ L++C+ F
Sbjct: 70 SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 129
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--D 178
+ PP T++ ++ L + N V R ++ +
Sbjct: 130 SLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 182
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
C + +D Q KR RT+ QL T+K + + P +QL+
Sbjct: 183 YNSGCNENEADHMDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLA 242
Query: 239 QDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 243 QKTGLTKRVLQVWFQNARAKFRRNLLRQENG 273
>gi|326924942|ref|XP_003208681.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Meleagris
gallopavo]
Length = 271
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 1 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 60
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 61 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHF-GMKD 119
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E+ L G+ P + T + AK
Sbjct: 120 NLVYCRAHFESL-------LQGEYPPQLSYTELAAK 148
>gi|224493175|sp|Q90881.2|LHX9_CHICK RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA++ VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E+ L G+ P + T + AK
Sbjct: 179 NLVYCRAHFESL-------LQGEYPPQLSYTELAAK 207
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 19/211 (9%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFCKEDFF 125
S+ +C C + +++ E +H C C C L + ++ L++C+ F
Sbjct: 129 SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 188
Query: 126 KRFGTKCAGCEMGIPP----TQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--D 178
+ PP T++ ++ L + N V R ++ +
Sbjct: 189 SLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVN 241
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLS 238
C + +D Q KR T+ QL T+K + + P +QL+
Sbjct: 242 YNSGCNENEADHMDRDQQPYPPSQKTKRMATSFKHHQLRTMKSYFAINHNPDAKDLKQLA 301
Query: 239 QDTGLDMRVVQVWFQNRRAKEKR--LKKDAG 267
Q TGL RV+QVWFQN RAK +R L+++ G
Sbjct: 302 QKTGLTKRVLQVWFQNARAKFRRNLLRQENG 332
>gi|122934990|gb|ABM68252.1| LHX3 [Lagothrix lagotricha]
gi|124013648|gb|ABM88086.1| LHX3 [Macaca nemestrina]
Length = 67
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
RFGTKCA C++GIPPTQVVRRAQD VYHL+CFACV+C RQL TGDEFYLMED +LVCK D
Sbjct: 1 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 60
Query: 187 YEAAKAK 193
YE AK +
Sbjct: 61 YETAKQR 67
>gi|281354175|gb|EFB29759.1| hypothetical protein PANDA_007956 [Ailuropoda melanoleuca]
Length = 382
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|354485102|ref|XP_003504723.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cricetulus
griseus]
Length = 397
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|70909340|ref|NP_001020736.1| LIM/homeobox protein Lhx9 isoform a [Mus musculus]
gi|49119043|gb|AAH72623.1| LIM homeobox protein 9 [Mus musculus]
Length = 330
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 207
>gi|345487079|ref|XP_001599685.2| PREDICTED: LIM/homeobox protein Lhx9-like [Nasonia vitripennis]
Length = 406
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 11/186 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG- 129
CGGCG I +R+ L+ +R WH CL+C C PLA + CFAR+G ++CKED+++ F
Sbjct: 46 CGGCGREIAERWYLRAADRPWHCGCLRCCHCRLPLAAELTCFARDGNIYCKEDYYRLFAV 105
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
++C+ C GI T++V RA+DLVYH+ CF C C LN GD F D + C+P YE
Sbjct: 106 SRCSRCRAGISATELVMRARDLVYHVACFTCASCGTPLNKGDHFG-QRDGLVYCRPHYEL 164
Query: 190 A------KAKDGNCLDGDQPNKRPRTT-ITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
+ G+ D P P +A + + + R + +LS+ TG
Sbjct: 165 ICCATDYGSTSGSVEDLGSPGVSPLPGYYSAAEQSPIAAGGGGGAQKGRPRKRKLSEVTG 224
Query: 243 LDMRVV 248
++ V
Sbjct: 225 SELPVT 230
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 187 YEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMR 246
Y+A+ G + +Q KR RT+ QL T+K + + P +QL+Q TGL R
Sbjct: 256 YDASVGSPGGPVHQNQRTKRMRTSFKHHQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKR 315
Query: 247 VVQVWFQNRRAKEKR 261
V+QVWFQN RAK +R
Sbjct: 316 VLQVWFQNARAKWRR 330
>gi|27923333|gb|AAO27570.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 325
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 29 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 88
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 89 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 147
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 148 SLVYCRAHFE-------TLLQGEYPPQLSYTELAAK 176
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 234 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 293
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 294 NLLRQENG 301
>gi|110611159|ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus]
gi|224471884|sp|Q9WUH2.3|LHX9_MOUSE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 14/156 (8%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 60 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 119
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 120 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 178
Query: 179 RKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAK 214
+ C+ +E L G+ P + T + AK
Sbjct: 179 SLVYCRAHFETL-------LQGEYPPQLSYTELAAK 207
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 324
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 325 NLLRQENG 332
>gi|383850874|ref|XP_003700999.1| PREDICTED: LIM/homeobox protein Lhx9-like [Megachile rotundata]
Length = 391
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 11/185 (5%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG- 129
CGGCG I +R+ L+ +R WH CL+C C PLA + CFAR+G ++CKED+++ F
Sbjct: 38 CGGCGREIAERWYLRAADRAWHCGCLRCCHCRVPLAAELTCFARDGNIYCKEDYYRLFAV 97
Query: 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
++C+ C GI +++V RA+DLVYH+ CF C C LN GD F D + C+P YE
Sbjct: 98 SRCSRCRAGISASELVMRARDLVYHVACFTCASCGTPLNKGDHFG-QRDGLVYCRPHYEL 156
Query: 190 A------KAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGL 243
+ N D P P + E +A + + + R + +LS+ TG
Sbjct: 157 LCCAGDYGSAASNIEDIGSPGVSPLPAYYSAA-EQSPIATSGTVQKGRPRKRKLSEVTGS 215
Query: 244 DMRVV 248
++ V
Sbjct: 216 ELPVT 220
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 35/231 (15%)
Query: 64 YMPIASIPKCGGC-GDLILDRFILKVLERTWHARCLKCHECGAPL--AEKCFARNGLLFC 120
Y + ++ +C C + +++ + +H C C CG PL + R+GL++C
Sbjct: 91 YYRLFAVSRCSRCRAGISASELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRDGLVYC 150
Query: 121 KEDF-----FKRFGTKCAGCE----MGIPPTQVVRRAQDLVYHLNCFACVMCARQLN--- 168
+ + +G+ + E G+ P A + + V R
Sbjct: 151 RPHYELLCCAGDYGSAASNIEDIGSPGVSPLPAYYSAAEQS-PIATSGTVQKGRPRKRKL 209
Query: 169 ---TGDEF-----------YLMEDRKLVCKPD----YEAAKAKDGNCLDGDQPNKRPRTT 210
TG E L+ +L + YEA+ G + Q KR RT+
Sbjct: 210 SEVTGSELPVTMRLAAGALELLHPTELSSSMESLAAYEASVGSPGP-VHQSQRTKRMRTS 268
Query: 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 269 FKHHQLRTMKNYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 319
>gi|443696308|gb|ELT97041.1| hypothetical protein CAPTEDRAFT_43751, partial [Capitella teleta]
Length = 271
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG+ I DR+ L+ +ER WHA CL+C +C PL + C+AR+G +FCKED+++ F
Sbjct: 2 CAGCGEKITDRYYLQAVERAWHANCLRCAQCKLPLDSEVTCYARDGSIFCKEDYYRLFAI 61
Query: 131 K-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
K C+GC + I ++V +A+D VYH+NCF C C + L TG+ F + E+ + C+ YE
Sbjct: 62 KRCSGCHLAISANELVMKARDSVYHMNCFTCASCHKLLITGEHFGMKENL-IYCRMHYE 119
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 195 GNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254
GN + KR RT+ QL +K + + P +QL+Q TGL RV+QVWFQN
Sbjct: 196 GNDMSMQARQKRMRTSFKHHQLRIMKSYFQLNHNPDAKDLKQLAQKTGLSKRVLQVWFQN 255
Query: 255 RRAKEKR--LKKDA 266
RAK +R LK+DA
Sbjct: 256 ARAKHRRNLLKQDA 269
>gi|345806104|ref|XP_548461.3| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Canis lupus
familiaris]
Length = 397
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 11 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 68
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 69 NLESELTCFSKDGSIYCKEDYYSPSLNGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 128
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 129 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 162
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 231 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 290
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 291 AQKTGLTKRVLQVWFQNARAKFRR 314
>gi|426223032|ref|XP_004005683.1| PREDICTED: LIM homeobox transcription factor 1-beta [Ovis aries]
Length = 405
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 97/195 (49%), Gaps = 40/195 (20%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFF------K 126
C GC I DRF+++V E +WH CL+C C L C+ R+ L+CK+D+ +
Sbjct: 56 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYGVAGTLQQ 115
Query: 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPD 186
F KC+GC I PT+ V RA + VYHL CF C +C RQL GDEF L E +L+CK D
Sbjct: 116 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEG-QLLCKGD 174
Query: 187 YE---------------AAKAKD----------------GNCLDGDQPN--KRPRTTITA 213
YE + K++D G+ DG P KRPRT +T
Sbjct: 175 YEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTT 234
Query: 214 KQLETLKMAYNTSPK 228
+Q K ++ S K
Sbjct: 235 QQRRAFKASFEVSSK 249
>gi|440908262|gb|ELR58305.1| LIM/homeobox protein Lhx2, partial [Bos grunniens mutus]
Length = 410
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 25 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 82
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 83 NLESELTCFSKDGSIYCKEDYYSPSLDGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 142
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 143 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 176
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 244 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 303
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 304 AQKTGLTKRVLQVWFQNARAKFRR 327
>gi|410986202|ref|XP_003999401.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Felis catus]
Length = 388
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 51 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 110
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 111 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 169
Query: 179 RKLVCKPDYE 188
+ C+ +E
Sbjct: 170 SLVYCRAHFE 179
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 315
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 316 NLLRQENG 323
>gi|397473228|ref|XP_003808119.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pan paniscus]
gi|426362990|ref|XP_004048631.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Gorilla gorilla
gorilla]
gi|21753589|dbj|BAC04371.1| unnamed protein product [Homo sapiens]
gi|119607983|gb|EAW87577.1| LIM homeobox 2, isoform CRA_b [Homo sapiens]
Length = 397
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 11 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 68
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 69 NLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 128
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 129 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 162
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 231 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 290
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 291 AQKTGLTKRVLQVWFQNARAKFRR 314
>gi|403299864|ref|XP_003940694.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 11 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 68
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 69 NLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 128
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 129 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 162
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 231 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 290
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 291 AQKTGLTKRVLQVWFQNARAKFRR 314
>gi|297685312|ref|XP_002820236.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pongo abelii]
Length = 414
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 145
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 146 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 179
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 248 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 307
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 308 AQKTGLTKRVLQVWFQNARAKFRR 331
>gi|402896426|ref|XP_003911301.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Papio anubis]
Length = 414
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 145
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 146 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 179
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 248 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 307
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 308 AQKTGLTKRVLQVWFQNARAKFRR 331
>gi|332229977|ref|XP_003264162.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Nomascus
leucogenys]
Length = 414
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDSETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 145
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 146 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 179
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 248 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 307
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 308 AQKTGLTKRVLQVWFQNARAKFRR 331
>gi|297662848|ref|XP_002809900.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Pongo abelii]
Length = 489
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 85/156 (54%), Gaps = 9/156 (5%)
Query: 33 LHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERT 92
L L E + S+ S+SF+ + + P + C GC +ILDRF+L++ +
Sbjct: 2 LDGLKMEENFQSAIDTSASFSSLLGRAVSPKSV-------CEGCQRVILDRFLLRLNDSF 54
Query: 93 WHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLV 152
WH +C++C C PL CF R+ L+CK D+ K F KC GC I P + V RAQ V
Sbjct: 55 WHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSV 114
Query: 153 YHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
YHL+CF C +C RQL GDEF L R + DYE
Sbjct: 115 YHLSCFCCCVCERQLQXGDEFVL--KRAAALQRDYE 148
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 177 EDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQ 236
+D + +CK + A K D +P KRPRT +T +Q K ++ S KP R VRE
Sbjct: 276 DDEESLCKSAHGAGKGTAEEGKDHKRP-KRPRTILTTQQRRAFKASFEVSSKPCRKVRET 334
Query: 237 LSQDTGLDMRVVQVWFQNRRAKEKRL 262
L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 335 LAAETGLSVRVVQVWFQNQRAKMKKL 360
>gi|395824163|ref|XP_003785340.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Otolemur garnettii]
Length = 414
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYSPSLHGLYRRFSVQRCARCHLGISASEMVMRARDLVYH 145
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 146 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 179
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 248 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 307
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 308 AQKTGLTKRVLQVWFQNARAKFRR 331
>gi|410986204|ref|XP_003999402.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Felis catus]
Length = 380
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 7/131 (5%)
Query: 65 MPIASIPK---CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLF 119
MP S K C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++
Sbjct: 41 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 100
Query: 120 CKEDFFKRFGT-KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
CKED+++RF +CA C +GI +++V RA+D VYHL+CF C C + L TGD F M+D
Sbjct: 101 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKD 159
Query: 179 RKLVCKPDYEA 189
+ C+ +E
Sbjct: 160 SLVYCRAHFET 170
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 248 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 307
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 308 NLLRQENG 315
>gi|301605176|ref|XP_002932201.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 398
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 8/168 (4%)
Query: 27 GICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDR 83
GI + ++ E S S+ S + G MP S K C GCG I DR
Sbjct: 24 GITGGHIQGIMEEMERRSKSADSRLAKGIQVNG-RETRMPSLSPEKPALCAGCGGKISDR 82
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 83 YYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGIS 142
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
+++V RA++ VYHL+CF C C + L+TGD F + E+ + C+ +E
Sbjct: 143 ASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENL-VYCRIHFE 189
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+ QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 266 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 325
Query: 262 --LKKDAG 267
L+++ G
Sbjct: 326 NLLRQENG 333
>gi|257207364|emb|CAX83161.1| LIM/homeobox protein Lhx5 [Schistosoma japonicum]
Length = 307
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Query: 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKR 127
++ +C C +I D++ + +TWH CL+C +CG L E+C+ ++G L+C+EDF K
Sbjct: 151 VNLLRCTECQSIIFDQYYHSIDNQTWHQSCLRCFDCGLILTERCYVKDGHLYCREDFIKN 210
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLME-DRKLVCKPD 186
FG KC+ C I ++VR A+ VYH+NCF C +C + +TGD+++L D L+C+
Sbjct: 211 FGPKCSACHKIIHEGELVRFARHYVYHINCFQCGVCKKLFDTGDQYFLSHSDTFLICREH 270
Query: 187 Y 187
Y
Sbjct: 271 Y 271
>gi|431898812|gb|ELK07182.1| LIM/homeobox protein Lhx2 [Pteropus alecto]
Length = 414
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 47 SFSSSFNDVDYEGIMP-VYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGA 105
+ SS+ + D E MP + A++ C GCG I DR+ L +++ WH RCLKC EC
Sbjct: 28 AISSAIDRGDTETTMPSISSDRAAL--CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL 85
Query: 106 PLAEK--CFARNGLLFCKEDFF--------KRFGT-KCAGCEMGIPPTQVVRRAQDLVYH 154
L + CF+++G ++CKED++ +RF +CA C +GI +++V RA+DLVYH
Sbjct: 86 NLESELTCFSKDGSIYCKEDYYSPSFDGPYRRFSVQRCARCHLGISASEMVMRARDLVYH 145
Query: 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
LNCF C C + L TGD F M+D + C+ +EA
Sbjct: 146 LNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 179
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 187 YEAA---KAKDGNCLDGDQP------NKRPRTTITAKQLETLKMAYNTSPKPARHVREQL 237
Y AA D LD DQP KR RT+ QL T+K + + P +QL
Sbjct: 248 YNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 307
Query: 238 SQDTGLDMRVVQVWFQNRRAKEKR 261
+Q TGL RV+QVWFQN RAK +R
Sbjct: 308 AQKTGLTKRVLQVWFQNARAKFRR 331
>gi|124377600|dbj|BAF46217.1| LIM homeobox gene 9 beta protein [Glandirana rugosa]
Length = 347
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
Query: 27 GICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDR 83
GI + ++ E S S+ + + G MP S K C GCG I DR
Sbjct: 5 GITGGHIQGIMEEMERRSKSADNRLAKTIQVNG-RETRMPPLSPEKPTLCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
+++V RA++ VYHL+CF C C + L+TGD F + E+
Sbjct: 124 ASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKEN 161
>gi|432092293|gb|ELK24915.1| LIM/homeobox protein Lhx9, partial [Myotis davidii]
Length = 420
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT 130
C GCG I DR+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF
Sbjct: 12 CAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 71
Query: 131 -KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189
+CA C +GI +++V RA+D VYHL+CF C C++ L TGD F M+D + C+ +E+
Sbjct: 72 QRCARCHLGISASEMVMRARDAVYHLSCFTCSTCSKTLATGDHFG-MKDGLVYCRAHFES 130
Query: 190 AKAKDGNCLDGDQPNKRPRTTITAK 214
L G+ P T + AK
Sbjct: 131 L-------LHGEFPAPLSYTELAAK 148
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 11/207 (5%)
Query: 69 SIPKCGGCG-DLILDRFILKVLERTWHARCLKCHECGAPLA--EKCFARNGLLFCKEDFF 125
S+ +C C + +++ + +H C C C LA + ++GL++C+ F
Sbjct: 70 SVQRCARCHLGISASEMVMRARDAVYHLSCFTCSTCSKTLATGDHFGMKDGLVYCRAHFE 129
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVY-HLNCFACVMCARQLNTGDEFYLME--DRKLV 182
+ + T++ + L + N V R ++ +
Sbjct: 130 SLLHGEFPA---PLSYTELAAKGGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYSSG 186
Query: 183 CKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG 242
C + +D Q KR RT+ QL T+K + + P +QL+Q TG
Sbjct: 187 CNENEADPLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTG 246
Query: 243 LDMRVVQVWFQNRRAKEKR--LKKDAG 267
L RV+QVWFQN RAK +R L+++ G
Sbjct: 247 LTKRVLQVWFQNARAKFRRNLLRQENG 273
>gi|328925124|dbj|BAK19077.1| apterous B alpha [Bombyx mori]
Length = 349
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 10/131 (7%)
Query: 72 KCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFG 129
+C GCG I DR+ L ++R WH CL+C EC PL + CF+R+G ++CKED+++ F
Sbjct: 17 ECAGCGGKIQDRYYLLAVDRQWHGSCLRCCECRLPLDTELTCFSRDGNIYCKEDYYRLFC 76
Query: 130 TK-CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
K C C GI ++V RA+DLVYHLNCF CV C QL+ GD F M+ + C+P Y+
Sbjct: 77 VKRCGRCCNGITANELVMRARDLVYHLNCFTCVACGTQLSKGDVFG-MKGGLVYCRPHYD 135
Query: 189 AAKAKDGNCLD 199
A CLD
Sbjct: 136 TA------CLD 140
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 36/228 (15%)
Query: 64 YMPIASIPKCGGC-GDLILDRFILKVLERTWHARCLKCHECGAPLAE-KCFA-RNGLLFC 120
Y + + +CG C + + +++ + +H C C CG L++ F + GL++C
Sbjct: 71 YYRLFCVKRCGRCCNGITANELVMRARDLVYHLNCFTCVACGTQLSKGDVFGMKGGLVYC 130
Query: 121 K--------EDFFKRFGTKCAGCE-------------MGIPPTQVVRR------AQDLVY 153
+ +D+ T C+ G P R+ + D +
Sbjct: 131 RPHYDTACLDDYCDEEMTNGYRCQDMHNGGNSPQYYSGGSTPKGRPRKRKIPHGSPDELQ 190
Query: 154 HLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITA 213
L+ GD ME Y+++ A G+ Q KR RT+
Sbjct: 191 AQTIRMASSALEILHRGDLSSSMESLA------YDSSVASPGSVSSHTQRTKRMRTSFKH 244
Query: 214 KQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
QL T+K + + P +QL+Q TGL RV+QVWFQN RAK +R
Sbjct: 245 HQLRTMKSYFAINQNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKWRR 292
>gi|312385469|gb|EFR29961.1| hypothetical protein AND_00756 [Anopheles darlingi]
Length = 344
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 57/244 (23%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDF------ 124
C CG+ I D+++ + WH CL+C C L + C+ R+ ++C+ D+
Sbjct: 13 CTACGEPIADKYLFDIDGCAWHGSCLRCSVCLTLLERQPSCYFRDRHVYCRADYANTAST 72
Query: 125 -------------------------------------FKRFGTKCAGCEMGIPPTQVVRR 147
FG KC+ C I + VR+
Sbjct: 73 DSKPPGTSTKQQQQQQQQVVCYHRRDREVLDRFPGPLLLTFGAKCSKCCRTIAASDWVRK 132
Query: 148 AQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLD-------- 199
A+DLV+HL CF+C C RQL+TG++F L++D K++C+ Y DG+
Sbjct: 133 ARDLVFHLACFSCDTCGRQLSTGEQFALIDD-KVMCRSHY-MDTVDDGSNSSDDGCSSSD 190
Query: 200 --GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRA 257
+KR RTT T +QL+ L+ + P E+++Q TGL RV QVWFQN RA
Sbjct: 191 GYNKNKSKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIAQLTGLSKRVTQVWFQNSRA 250
Query: 258 KEKR 261
++K+
Sbjct: 251 RQKK 254
>gi|301605174|ref|XP_002932200.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 331
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 8/168 (4%)
Query: 27 GICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDR 83
GI + ++ E S S+ S + G MP S K C GCG I DR
Sbjct: 24 GITGGHIQGIMEEMERRSKSADSRLAKGIQVNG-RETRMPSLSPEKPALCAGCGGKISDR 82
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 83 YYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGIS 142
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYE 188
+++V RA++ VYHL+CF C C + L+TGD F + E+ + C+ +E
Sbjct: 143 ASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENL-VYCRIHFE 189
>gi|432889048|ref|XP_004075119.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
latipes]
Length = 357
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 90/169 (53%), Gaps = 30/169 (17%)
Query: 125 FKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK 184
F F KC+GC I T +V RA + VYHL+CF C +C QL GDEF L E +L CK
Sbjct: 118 FGLFSAKCSGCLERIAATDLVIRALERVYHLSCFCCCICEHQLCKGDEFVLKEG-QLFCK 176
Query: 185 PDYEAAK---AKDGNCLDGDQPN--------------------------KRPRTTITAKQ 215
DY+ + + G+ D D+ KRPRT +T +Q
Sbjct: 177 KDYDKERNLSSTGGDNSDSDKSRDDFEAESEHFVTAVKGSDDNKDPFRPKRPRTILTTQQ 236
Query: 216 LETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
T K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L +
Sbjct: 237 RRTFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 285
>gi|124377602|dbj|BAF46218.1| LIM homeobox gene 9 gamma protein [Glandirana rugosa]
Length = 331
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
Query: 27 GICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDR 83
GI + ++ E S S+ + + G MP S K C GCG I DR
Sbjct: 5 GITGGHIQGIMEEMERRSKSADNRLAKTIQVNG-RETRMPPLSPEKPTLCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
+++V RA++ VYHL+CF C C + L+TGD F + E+
Sbjct: 124 ASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKEN 161
>gi|327290473|ref|XP_003229947.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like, partial
[Anolis carolinensis]
Length = 293
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 87/165 (52%), Gaps = 32/165 (19%)
Query: 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
F KC+ C I P+Q V RAQ VYH+ CF C +C +QL GDEF L E +L+C DY
Sbjct: 2 FAVKCSNCFEAISPSQFVMRAQKNVYHVACFCCGVCEKQLQKGDEFVLKEG-QLLCNSDY 60
Query: 188 E---------------AAKAKDGNCL---------------DGDQPNKRPRTTITAKQLE 217
E K+ D L D +P KRPRT +T +Q
Sbjct: 61 EKECELLSLVSPAASDPGKSSDVENLCKMEEKTRKVSEDTKDHKRP-KRPRTILTTQQRR 119
Query: 218 TLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
K ++ S KP R VRE L+ +TGL +RVVQVWFQN+RAK K+L
Sbjct: 120 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKIKKL 164
>gi|124377606|dbj|BAF46220.1| LIM homeobox gene 9 epsilon protein [Glandirana rugosa]
Length = 297
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
Query: 27 GICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDR 83
GI + ++ E S S+ + + G MP S K C GCG I DR
Sbjct: 5 GITGGHIQGIMEEMERRSKSADNRLAKTIQVNG-RETRMPPLSPEKPTLCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
+++V RA++ VYHL+CF C C + L+TGD F + E+
Sbjct: 124 ASEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKEN 161
>gi|121483796|gb|ABM54189.1| LHX6 [Pan paniscus]
gi|124054101|gb|ABM89234.1| LHX6 [Pongo pygmaeus]
Length = 198
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKE 122
+P A C CG ILDR++LKV WH RCL+C C L ++ C+ +N +FCK
Sbjct: 62 VPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKM 121
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLV 182
D+F RFGTKCA C I + VRRA+ YHL CFAC C RQL+TG+EF L+E+ K++
Sbjct: 122 DYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVL 180
Query: 183 CKPDYE 188
C+ Y+
Sbjct: 181 CRIHYD 186
>gi|124377604|dbj|BAF46219.1| LIM homeobox gene 9 delta protein [Glandirana rugosa]
Length = 312
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
Query: 27 GICASKLHDLLHEAHAGSSSSFSSSFNDVDYEGIMPVYMPIASIPK---CGGCGDLILDR 83
GI + ++ E S S+ + + G MP S K C GCG I DR
Sbjct: 5 GITGGHIQGIMEEMERRSKSADNRLAKTIQVNG-RETRMPPLSPEKPTLCAGCGGKISDR 63
Query: 84 FILKVLERTWHARCLKCHECGAPLAEK--CFARNGLLFCKEDFFKRFGT-KCAGCEMGIP 140
+ L +++ WH RCLKC EC L + CFA++G ++CKED+++RF +CA C +GI
Sbjct: 64 YYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGIS 123
Query: 141 PTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMED 178
+++V RA++ VYHL+CF C C + L+TGD F + E+
Sbjct: 124 ASEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKEN 161
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,968,575,548
Number of Sequences: 23463169
Number of extensions: 207007782
Number of successful extensions: 457991
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 15089
Number of HSP's successfully gapped in prelim test: 4310
Number of HSP's that attempted gapping in prelim test: 423540
Number of HSP's gapped (non-prelim): 28183
length of query: 306
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 164
effective length of database: 9,027,425,369
effective search space: 1480497760516
effective search space used: 1480497760516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)