Query psy4325
Match_columns 306
No_of_seqs 313 out of 2533
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:44:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rgt_A Fusion of LIM/homeobox 100.0 4.7E-35 1.6E-39 244.3 4.7 159 69-231 5-163 (169)
2 2jtn_A LIM domain-binding prot 100.0 1.5E-29 5.1E-34 213.4 11.1 125 67-191 57-181 (182)
3 2xjy_A Rhombotin-2; oncoprotei 100.0 1.6E-29 5.3E-34 202.1 7.6 124 70-194 2-130 (131)
4 2xqn_T Testin, TESS; metal-bin 99.9 2.5E-28 8.5E-33 193.8 7.8 121 69-191 2-125 (126)
5 1rut_X Flinc4, fusion protein 99.9 5.2E-28 1.8E-32 204.9 4.5 124 69-193 4-132 (188)
6 1b8t_A Protein (CRP1); LIM dom 99.9 8.8E-26 3E-30 191.8 6.6 124 69-195 6-178 (192)
7 2cup_A Skeletal muscle LIM-pro 99.9 1.3E-24 4.4E-29 165.6 8.0 96 69-164 4-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.8 1.4E-21 4.9E-26 153.8 5.5 111 69-196 4-119 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.8 4.3E-20 1.5E-24 143.6 5.5 106 70-196 3-111 (114)
10 1b8t_A Protein (CRP1); LIM dom 99.8 2.1E-20 7.1E-25 158.7 3.2 125 15-139 7-185 (192)
11 2dmu_A Homeobox protein goosec 99.8 1.2E-19 4E-24 128.6 4.2 64 202-265 5-68 (70)
12 2dmt_A Homeobox protein BARH-l 99.8 7.6E-20 2.6E-24 133.0 3.3 64 201-264 14-77 (80)
13 1nk2_P Homeobox protein VND; h 99.8 2.6E-19 9E-24 129.2 5.8 68 201-268 6-73 (77)
14 2cra_A Homeobox protein HOX-B1 99.8 8E-20 2.7E-24 129.5 2.4 64 202-265 5-68 (70)
15 2dms_A Homeobox protein OTX2; 99.8 2.8E-19 9.4E-24 130.0 5.1 65 202-266 5-69 (80)
16 1zq3_P PRD-4, homeotic bicoid 99.8 3.5E-19 1.2E-23 125.4 5.3 63 204-266 2-64 (68)
17 2da3_A Alpha-fetoprotein enhan 99.8 1.5E-19 5.2E-24 131.5 3.4 64 201-264 14-77 (80)
18 2e1o_A Homeobox protein PRH; D 99.8 2.4E-19 8.2E-24 127.0 4.3 64 202-265 5-68 (70)
19 2dmq_A LIM/homeobox protein LH 99.8 4.5E-19 1.6E-23 128.9 5.8 65 202-266 5-69 (80)
20 2da2_A Alpha-fetoprotein enhan 99.8 1.2E-19 4.1E-24 128.6 2.6 65 201-265 4-68 (70)
21 2cue_A Paired box protein PAX6 99.8 4.5E-19 1.5E-23 128.9 5.4 65 202-266 5-69 (80)
22 2djn_A Homeobox protein DLX-5; 99.8 1.4E-19 4.7E-24 128.2 2.5 64 201-264 4-67 (70)
23 2da1_A Alpha-fetoprotein enhan 99.8 1.3E-19 4.4E-24 128.4 2.3 64 202-265 5-68 (70)
24 2h1k_A IPF-1, pancreatic and d 99.8 2.1E-19 7.2E-24 124.6 3.3 60 204-263 3-62 (63)
25 1ahd_P Antennapedia protein mu 99.8 1.8E-19 6.2E-24 126.8 2.8 63 204-266 2-64 (68)
26 1puf_A HOX-1.7, homeobox prote 99.8 5.8E-19 2E-23 127.3 5.4 66 201-266 10-75 (77)
27 2hdd_A Protein (engrailed home 99.8 2E-19 7E-24 123.8 2.7 58 204-261 3-60 (61)
28 3a01_A Homeodomain-containing 99.8 4.8E-19 1.6E-23 132.3 4.9 69 201-269 14-82 (93)
29 1ig7_A Homeotic protein MSX-1; 99.8 2.9E-19 9.9E-24 121.8 3.3 58 205-262 1-58 (58)
30 2vi6_A Homeobox protein nanog; 99.7 1.9E-19 6.5E-24 124.4 1.2 59 204-262 3-61 (62)
31 2l7z_A Homeobox protein HOX-A1 99.7 5.5E-19 1.9E-23 126.1 3.6 64 202-265 5-68 (73)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 6.2E-19 2.1E-23 124.1 3.8 63 204-266 2-64 (68)
33 2ecc_A Homeobox and leucine zi 99.7 5.2E-19 1.8E-23 125.6 3.2 59 206-264 5-63 (76)
34 1jgg_A Segmentation protein EV 99.7 5.3E-19 1.8E-23 121.3 3.0 58 205-262 2-59 (60)
35 2kt0_A Nanog, homeobox protein 99.7 4.1E-19 1.4E-23 130.4 2.4 64 201-264 19-82 (84)
36 1yz8_P Pituitary homeobox 2; D 99.7 3.8E-19 1.3E-23 125.2 2.2 63 203-265 2-64 (68)
37 2da4_A Hypothetical protein DK 99.7 7.7E-19 2.6E-23 127.7 3.8 64 201-264 5-72 (80)
38 1wh5_A ZF-HD homeobox family p 99.7 3.4E-19 1.2E-23 129.2 1.8 61 201-261 14-78 (80)
39 2r5y_A Homeotic protein sex co 99.7 6.3E-19 2.1E-23 130.5 3.2 64 200-263 24-87 (88)
40 3a02_A Homeobox protein arista 99.7 4.3E-19 1.5E-23 121.8 1.9 58 207-264 2-59 (60)
41 2m0c_A Homeobox protein arista 99.7 8.6E-19 2.9E-23 125.9 3.5 67 199-265 4-70 (75)
42 1fjl_A Paired protein; DNA-bin 99.7 1.2E-18 4E-23 127.0 4.2 64 201-264 15-78 (81)
43 3a03_A T-cell leukemia homeobo 99.7 7.9E-19 2.7E-23 118.7 2.8 54 209-262 2-55 (56)
44 1bw5_A ISL-1HD, insulin gene e 99.7 4.2E-19 1.4E-23 124.2 1.3 60 204-263 3-62 (66)
45 1b72_A Protein (homeobox prote 99.7 1.3E-18 4.4E-23 131.1 4.1 66 201-266 31-96 (97)
46 2k40_A Homeobox expressed in E 99.7 1.3E-18 4.3E-23 122.2 3.6 60 205-264 2-61 (67)
47 1uhs_A HOP, homeodomain only p 99.7 1.9E-18 6.5E-23 123.0 4.5 60 206-265 3-63 (72)
48 1b8i_A Ultrabithorax, protein 99.7 9.5E-19 3.3E-23 127.4 2.8 62 202-263 18-79 (81)
49 3rkq_A Homeobox protein NKX-2. 99.7 1.5E-18 5.2E-23 118.2 3.6 57 204-260 2-58 (58)
50 1rut_X Flinc4, fusion protein 99.7 1E-18 3.4E-23 147.7 3.0 145 16-160 6-170 (188)
51 2ecb_A Zinc fingers and homeob 99.7 3.2E-18 1.1E-22 125.8 4.9 58 209-266 16-73 (89)
52 2hi3_A Homeodomain-only protei 99.7 2.8E-18 9.7E-23 122.4 4.4 61 205-265 3-64 (73)
53 1wh7_A ZF-HD homeobox family p 99.7 7.4E-19 2.5E-23 127.2 1.4 60 201-261 14-78 (80)
54 2da5_A Zinc fingers and homeob 99.7 3E-18 1E-22 122.9 4.3 60 206-265 9-68 (75)
55 1x2n_A Homeobox protein pknox1 99.7 3.7E-18 1.3E-22 121.9 4.3 64 202-265 5-71 (73)
56 1akh_A Protein (mating-type pr 99.7 1.4E-18 4.7E-23 119.7 1.6 58 203-260 4-61 (61)
57 1x6a_A LIMK-2, LIM domain kina 99.7 8.4E-18 2.9E-22 122.5 5.9 77 115-193 1-77 (81)
58 2xjy_A Rhombotin-2; oncoprotei 99.7 1.2E-18 4.2E-23 138.6 1.6 114 17-130 4-129 (131)
59 2dn0_A Zinc fingers and homeob 99.7 1.7E-18 5.8E-23 124.6 2.1 63 203-265 7-69 (76)
60 2ehe_A Four and A half LIM dom 99.7 1.3E-17 4.4E-22 121.8 6.8 79 56-134 1-81 (82)
61 1x63_A Skeletal muscle LIM-pro 99.7 9E-18 3.1E-22 122.6 5.9 80 115-196 1-80 (82)
62 2ehe_A Four and A half LIM dom 99.7 6.2E-18 2.1E-22 123.5 4.6 77 115-193 1-77 (82)
63 1puf_B PRE-B-cell leukemia tra 99.7 6E-18 2E-22 120.8 4.4 62 205-266 2-66 (73)
64 1wi3_A DNA-binding protein SAT 99.7 4.7E-18 1.6E-22 115.9 3.3 59 201-259 4-63 (71)
65 2ly9_A Zinc fingers and homeob 99.7 3.1E-18 1.1E-22 122.6 2.5 64 203-266 5-68 (74)
66 2xqn_T Testin, TESS; metal-bin 99.7 4.4E-18 1.5E-22 134.5 3.2 113 16-128 4-125 (126)
67 3nau_A Zinc fingers and homeob 99.7 4.9E-18 1.7E-22 116.4 2.7 53 211-263 11-63 (66)
68 2cuf_A FLJ21616 protein; homeo 99.7 1.2E-17 4.1E-22 125.3 4.8 66 201-266 4-84 (95)
69 1du6_A PBX1, homeobox protein 99.7 3.8E-18 1.3E-22 118.6 1.6 58 204-261 3-63 (64)
70 2dmn_A Homeobox protein TGIF2L 99.7 1.8E-17 6E-22 121.1 5.1 65 202-266 5-72 (83)
71 2cqx_A LAG1 longevity assuranc 99.7 3.4E-18 1.2E-22 121.3 1.2 59 205-263 9-68 (72)
72 2egq_A FHL1 protein; LIM domai 99.7 2.1E-17 7.2E-22 119.1 5.3 73 115-189 1-76 (77)
73 2dmp_A Zinc fingers and homeob 99.7 2E-17 6.9E-22 122.4 5.3 60 207-266 16-75 (89)
74 1b72_B Protein (PBX1); homeodo 99.7 4.7E-18 1.6E-22 125.6 1.8 62 205-266 2-66 (87)
75 1k61_A Mating-type protein alp 99.7 7.3E-18 2.5E-22 115.6 2.5 55 208-262 2-59 (60)
76 2cuq_A Four and A half LIM dom 99.7 4.1E-17 1.4E-21 118.5 6.5 76 115-194 1-76 (80)
77 3nar_A ZHX1, zinc fingers and 99.7 7.7E-18 2.6E-22 126.6 2.3 62 202-263 23-84 (96)
78 2dlo_A Thyroid receptor-intera 99.7 3.3E-17 1.1E-21 119.3 5.2 78 55-134 1-80 (81)
79 2cuq_A Four and A half LIM dom 99.7 4.6E-17 1.6E-21 118.2 5.6 78 56-134 1-79 (80)
80 1x3h_A Leupaxin; paxillin fami 99.7 6.6E-17 2.3E-21 117.4 5.5 75 115-193 1-75 (80)
81 2da6_A Hepatocyte nuclear fact 99.7 6.6E-17 2.3E-21 120.9 5.6 65 202-266 4-89 (102)
82 2l9r_A Homeobox protein NKX-3. 99.7 9.3E-18 3.2E-22 117.7 0.9 57 208-264 8-64 (69)
83 1x3h_A Leupaxin; paxillin fami 99.7 5.9E-17 2E-21 117.6 4.9 77 57-134 2-79 (80)
84 2dlo_A Thyroid receptor-intera 99.7 7.5E-17 2.5E-21 117.4 5.2 75 115-193 2-76 (81)
85 1x2m_A LAG1 longevity assuranc 99.7 1.1E-17 3.9E-22 114.8 0.7 51 212-262 8-59 (64)
86 2rgt_A Fusion of LIM/homeobox 99.7 2.7E-17 9.1E-22 136.6 2.9 140 15-158 6-155 (169)
87 1iml_A CRIP, cysteine rich int 99.6 1.2E-16 4.1E-21 114.9 5.8 70 71-140 1-72 (76)
88 1le8_B Mating-type protein alp 99.6 3.6E-17 1.2E-21 119.6 2.2 58 206-263 4-64 (83)
89 1mnm_C Protein (MAT alpha-2 tr 99.6 5.7E-17 2E-21 119.6 3.0 58 203-260 26-86 (87)
90 2dj7_A Actin-binding LIM prote 99.6 1.7E-16 5.8E-21 115.2 5.5 66 69-134 14-79 (80)
91 2e19_A Transcription factor 8; 99.6 3E-17 1E-21 113.7 1.3 54 208-261 7-60 (64)
92 2xsd_C POU domain, class 3, tr 99.6 2.7E-17 9.2E-22 135.4 1.3 64 202-265 97-160 (164)
93 1x68_A FHL5 protein; four-and- 99.6 3.3E-16 1.1E-20 112.5 6.9 69 68-136 3-75 (76)
94 1lfb_A Liver transcription fac 99.6 3.3E-17 1.1E-21 123.2 1.1 65 200-264 5-90 (99)
95 1au7_A Protein PIT-1, GHF-1; c 99.6 3.7E-17 1.3E-21 132.1 1.5 61 202-262 85-145 (146)
96 1e3o_C Octamer-binding transcr 99.6 4.6E-17 1.6E-21 133.7 1.8 61 202-262 99-159 (160)
97 1x63_A Skeletal muscle LIM-pro 99.6 3.6E-16 1.2E-20 114.0 6.3 77 57-133 2-80 (82)
98 2jtn_A LIM domain-binding prot 99.6 1.5E-16 5.2E-21 133.6 3.2 112 16-127 61-180 (182)
99 3l1p_A POU domain, class 5, tr 99.6 2.8E-16 9.6E-21 128.3 4.5 61 202-262 94-154 (155)
100 3d1n_I POU domain, class 6, tr 99.6 1.8E-16 6.2E-21 129.0 3.2 60 202-261 91-150 (151)
101 2dar_A PDZ and LIM domain prot 99.6 7.3E-16 2.5E-20 114.4 6.0 69 65-134 20-89 (90)
102 1a7i_A QCRP2 (LIM1); LIM domai 99.6 2.2E-16 7.4E-21 114.9 2.9 71 69-139 6-77 (81)
103 1v6g_A Actin binding LIM prote 99.6 6.6E-16 2.2E-20 112.4 4.3 76 116-194 2-77 (81)
104 1wyh_A SLIM 2, skeletal muscle 99.6 1.1E-15 3.7E-20 108.6 4.8 67 68-134 3-71 (72)
105 1x4k_A Skeletal muscle LIM-pro 99.6 1.5E-15 5.2E-20 107.8 5.2 66 69-134 4-71 (72)
106 2cu8_A Cysteine-rich protein 2 99.6 1.4E-15 4.6E-20 109.3 4.8 66 69-134 8-75 (76)
107 2d8z_A Four and A half LIM dom 99.6 1.4E-15 4.8E-20 107.4 4.2 65 69-134 4-69 (70)
108 3k2a_A Homeobox protein MEIS2; 99.6 6.3E-16 2.2E-20 108.1 2.3 56 209-264 3-61 (67)
109 1x6a_A LIMK-2, LIM domain kina 99.6 1.7E-15 5.7E-20 110.2 4.6 77 57-134 2-81 (81)
110 2egq_A FHL1 protein; LIM domai 99.6 3E-15 1E-19 107.7 5.8 70 57-126 2-76 (77)
111 2cur_A Skeletal muscle LIM-pro 99.6 1.5E-15 5.3E-20 106.9 4.1 65 69-134 4-69 (69)
112 2d5v_A Hepatocyte nuclear fact 99.6 4.3E-16 1.5E-20 128.6 0.7 66 201-266 94-159 (164)
113 2cor_A Pinch protein; LIM doma 99.5 3.4E-15 1.2E-19 108.1 5.0 64 69-133 14-77 (79)
114 1x4l_A Skeletal muscle LIM-pro 99.5 3.2E-15 1.1E-19 106.2 4.3 64 69-132 4-71 (72)
115 1g47_A Pinch protein; LIM doma 99.5 4E-15 1.4E-19 107.0 4.1 65 69-133 10-76 (77)
116 1nyp_A Pinch protein; LIM doma 99.5 4.1E-15 1.4E-19 103.7 3.4 62 69-131 4-66 (66)
117 2d8y_A Eplin protein; LIM doma 99.5 6.8E-15 2.3E-19 109.4 4.5 67 69-135 14-81 (91)
118 2lk2_A Homeobox protein TGIF1; 99.5 7.9E-15 2.7E-19 106.9 4.0 59 208-266 9-70 (89)
119 2l3k_A Rhombotin-2, linker, LI 99.5 2.2E-14 7.6E-19 112.7 6.0 70 124-194 1-72 (123)
120 1x64_A Alpha-actinin-2 associa 99.5 2E-14 6.9E-19 106.4 4.7 64 69-133 24-88 (89)
121 2d8x_A Protein pinch; LIM doma 99.5 2.1E-14 7.1E-19 101.3 4.4 64 69-133 4-68 (70)
122 1x62_A C-terminal LIM domain p 99.5 1.1E-14 3.6E-19 105.4 2.3 64 69-133 14-78 (79)
123 1wig_A KIAA1808 protein; LIM d 99.5 4E-14 1.4E-18 100.7 5.2 62 69-131 4-67 (73)
124 1x61_A Thyroid receptor intera 99.5 2.8E-14 9.6E-19 101.2 4.1 66 69-135 4-71 (72)
125 1wig_A KIAA1808 protein; LIM d 99.5 7.8E-14 2.7E-18 99.2 6.2 65 126-193 2-66 (73)
126 2l4z_A DNA endonuclease RBBP8, 99.5 6.2E-14 2.1E-18 110.0 6.0 62 68-129 59-123 (123)
127 2da7_A Zinc finger homeobox pr 99.5 2E-14 6.7E-19 98.8 2.5 46 213-258 14-59 (71)
128 2co8_A NEDD9 interacting prote 99.4 8.6E-14 2.9E-18 101.3 5.5 64 69-132 14-80 (82)
129 2l3k_A Rhombotin-2, linker, LI 99.4 1E-13 3.6E-18 108.8 6.0 72 72-143 10-84 (123)
130 1x4k_A Skeletal muscle LIM-pro 99.4 8.2E-14 2.8E-18 98.7 4.9 66 126-193 2-67 (72)
131 2cup_A Skeletal muscle LIM-pro 99.4 7.7E-14 2.6E-18 105.6 4.5 90 15-104 5-101 (101)
132 3f6q_B LIM and senescent cell 99.4 8E-14 2.7E-18 98.7 4.0 67 124-192 6-72 (72)
133 1wyh_A SLIM 2, skeletal muscle 99.4 1.5E-13 5.2E-18 97.3 5.4 67 126-194 2-68 (72)
134 1x61_A Thyroid receptor intera 99.4 2.2E-13 7.4E-18 96.6 5.7 65 127-193 3-67 (72)
135 3f6q_B LIM and senescent cell 99.4 1.6E-13 5.5E-18 97.1 4.3 62 68-129 9-72 (72)
136 1x4l_A Skeletal muscle LIM-pro 99.4 2.1E-13 7.3E-18 96.6 4.8 65 127-193 3-69 (72)
137 1x68_A FHL5 protein; four-and- 99.4 2E-13 6.7E-18 97.9 4.1 66 126-193 2-69 (76)
138 1v6g_A Actin binding LIM prote 99.4 4.4E-13 1.5E-17 97.3 5.7 71 58-129 3-75 (81)
139 1nyp_A Pinch protein; LIM doma 99.4 2E-13 6.9E-18 95.1 3.4 64 126-193 2-65 (66)
140 2iyb_E Testin, TESS, TES; LIM 99.4 2.4E-13 8.1E-18 94.4 3.5 58 70-127 2-64 (65)
141 1g47_A Pinch protein; LIM doma 99.4 2.7E-13 9.3E-18 97.3 3.9 66 126-193 8-73 (77)
142 1ic8_A Hepatocyte nuclear fact 99.4 2.9E-14 1E-18 119.7 -1.8 60 202-261 113-193 (194)
143 2dar_A PDZ and LIM domain prot 99.3 9.3E-13 3.2E-17 97.5 5.9 74 118-195 14-87 (90)
144 2d8y_A Eplin protein; LIM doma 99.3 1.5E-12 5.2E-17 96.6 6.6 75 127-204 13-87 (91)
145 2cur_A Skeletal muscle LIM-pro 99.3 1.3E-12 4.5E-17 91.7 5.4 63 127-193 3-65 (69)
146 2d8x_A Protein pinch; LIM doma 99.3 1.3E-12 4.3E-17 92.1 5.0 63 128-194 4-66 (70)
147 2d8z_A Four and A half LIM dom 99.3 1.3E-12 4.5E-17 92.0 4.6 64 127-194 3-66 (70)
148 2iyb_E Testin, TESS, TES; LIM 99.3 6.5E-13 2.2E-17 92.2 2.8 61 128-190 1-64 (65)
149 2cu8_A Cysteine-rich protein 2 99.3 2.2E-12 7.5E-17 92.4 4.5 66 126-194 6-72 (76)
150 2cor_A Pinch protein; LIM doma 99.3 2E-12 6.7E-17 93.4 4.2 63 127-194 13-75 (79)
151 2l4z_A DNA endonuclease RBBP8, 99.3 1.8E-12 6.3E-17 101.5 4.3 65 126-192 58-123 (123)
152 2h8r_A Hepatocyte nuclear fact 99.3 7.4E-13 2.5E-17 112.3 1.9 59 201-259 139-218 (221)
153 2dj7_A Actin-binding LIM prote 99.3 3.9E-12 1.3E-16 92.0 5.5 62 129-194 15-76 (80)
154 1x62_A C-terminal LIM domain p 99.3 1.9E-12 6.7E-17 93.4 3.2 63 129-195 15-77 (79)
155 1x64_A Alpha-actinin-2 associa 99.2 4.6E-12 1.6E-16 93.5 4.6 63 128-194 24-86 (89)
156 2co8_A NEDD9 interacting prote 99.2 4.2E-12 1.4E-16 92.3 3.1 63 129-193 15-78 (82)
157 1a7i_A QCRP2 (LIM1); LIM domai 99.2 4.5E-12 1.6E-16 91.8 3.2 64 128-194 6-69 (81)
158 1j2o_A FLIN2, fusion of rhombo 99.2 1E-11 3.5E-16 96.0 5.0 65 129-195 3-68 (114)
159 1iml_A CRIP, cysteine rich int 99.2 7E-12 2.4E-16 89.7 3.4 63 130-195 1-64 (76)
160 1mh3_A Maltose binding-A1 home 99.2 3E-12 1E-16 120.2 -0.0 56 205-260 366-421 (421)
161 1m3v_A FLIN4, fusion of the LI 99.1 1.2E-11 4.2E-16 96.8 2.7 65 127-193 3-68 (122)
162 2nzz_A Penetratin conjugated G 98.9 3.9E-10 1.3E-14 67.9 1.9 21 246-266 1-21 (37)
163 1zfo_A LAsp-1; LIM domain, zin 97.7 9.1E-06 3.1E-10 47.1 1.6 29 70-98 3-31 (31)
164 1zfo_A LAsp-1; LIM domain, zin 97.4 5.3E-05 1.8E-09 43.8 1.7 29 129-158 3-31 (31)
165 2ys9_A Homeobox and leucine zi 94.0 0.013 4.6E-07 39.8 0.8 43 212-254 14-56 (70)
166 2kwj_A Zinc finger protein DPF 83.3 1 3.4E-05 33.8 3.6 79 90-190 30-109 (114)
167 2ysm_A Myeloid/lymphoid or mix 81.8 2.1 7.2E-05 31.7 4.9 93 70-187 7-102 (111)
168 1t1h_A Gspef-atpub14, armadill 81.6 0.81 2.8E-05 31.3 2.4 46 96-141 7-55 (78)
169 1jm7_B BARD1, BRCA1-associated 80.2 1.8 6.2E-05 32.2 4.1 44 97-140 22-66 (117)
170 2ysl_A Tripartite motif-contai 80.1 1.1 3.9E-05 30.0 2.7 26 116-141 39-69 (73)
171 2ecy_A TNF receptor-associated 79.8 0.63 2.2E-05 30.8 1.2 44 99-142 17-63 (66)
172 4ap4_A E3 ubiquitin ligase RNF 79.2 0.78 2.7E-05 34.7 1.8 10 72-81 9-18 (133)
173 4gne_A Histone-lysine N-methyl 79.1 5.3 0.00018 29.5 6.2 50 70-139 15-68 (107)
174 1bor_A Transcription factor PM 77.8 3 0.0001 26.6 4.0 41 99-140 8-48 (56)
175 3hug_A RNA polymerase sigma fa 76.5 1.4 4.9E-05 31.2 2.4 51 210-265 37-87 (92)
176 2yur_A Retinoblastoma-binding 76.1 1.4 4.8E-05 29.9 2.2 47 98-144 16-67 (74)
177 2djb_A Polycomb group ring fin 75.5 1.8 6E-05 29.1 2.6 46 98-143 16-64 (72)
178 2ecv_A Tripartite motif-contai 74.9 2 6.9E-05 29.5 2.8 26 116-141 38-71 (85)
179 4ap4_A E3 ubiquitin ligase RNF 74.7 1.9 6.4E-05 32.5 2.8 93 97-193 7-112 (133)
180 2kre_A Ubiquitin conjugation f 73.0 2.5 8.7E-05 30.7 3.0 46 95-140 27-74 (100)
181 2ecw_A Tripartite motif-contai 69.9 1.9 6.5E-05 29.6 1.7 27 116-142 38-72 (85)
182 1wgm_A Ubiquitin conjugation f 69.5 2.8 9.6E-05 30.3 2.6 45 95-139 20-67 (98)
183 2egp_A Tripartite motif-contai 69.5 2.3 7.8E-05 28.9 2.0 25 116-140 31-64 (79)
184 2glo_A Brinker CG9653-PA; prot 69.0 1.6 5.5E-05 28.2 1.0 47 208-255 3-49 (59)
185 1jm7_A BRCA1, breast cancer ty 68.7 2.4 8.1E-05 31.1 2.1 43 98-140 22-69 (112)
186 2d8t_A Dactylidin, ring finger 68.5 2.9 0.0001 27.9 2.4 25 116-140 34-60 (71)
187 3l11_A E3 ubiquitin-protein li 68.1 2.6 8.9E-05 31.2 2.2 30 98-127 16-45 (115)
188 1jko_C HIN recombinase, DNA-in 68.0 1.6 5.5E-05 26.6 0.9 26 233-258 23-48 (52)
189 1hlv_A CENP-B, major centromer 67.5 3 0.0001 31.4 2.5 51 207-260 4-54 (131)
190 1p4w_A RCSB; solution structur 65.8 3 0.0001 30.3 2.1 46 208-259 32-77 (99)
191 4ayc_A E3 ubiquitin-protein li 65.8 2.9 9.8E-05 32.2 2.1 42 98-139 54-97 (138)
192 1tc3_C Protein (TC3 transposas 65.4 2.8 9.7E-05 25.0 1.6 41 210-255 5-45 (51)
193 2o8x_A Probable RNA polymerase 63.9 2.9 9.9E-05 27.5 1.6 48 210-262 15-62 (70)
194 2kr4_A Ubiquitin conjugation f 63.7 2.7 9.3E-05 29.4 1.5 46 95-140 12-59 (85)
195 2ecg_A Baculoviral IAP repeat- 62.5 4.3 0.00015 27.5 2.3 42 98-141 26-68 (75)
196 2csy_A Zinc finger protein 183 61.3 2.4 8.3E-05 29.1 0.8 24 116-139 34-59 (81)
197 2ct0_A Non-SMC element 1 homol 60.7 4.5 0.00015 27.8 2.1 15 69-83 14-28 (74)
198 4ic3_A E3 ubiquitin-protein li 59.4 5.2 0.00018 27.0 2.2 41 98-140 25-66 (74)
199 2eqg_A Tumor necrosis factor, 58.9 4.7 0.00016 24.4 1.6 22 171-192 19-40 (49)
200 2c2l_A CHIP, carboxy terminus 58.6 4.7 0.00016 34.5 2.4 48 95-142 206-256 (281)
201 1ku3_A Sigma factor SIGA; heli 58.4 4.8 0.00016 27.0 1.9 51 209-260 9-59 (73)
202 2jne_A Hypothetical protein YF 58.4 6.3 0.00022 28.4 2.5 31 130-168 62-92 (101)
203 2elh_A CG11849-PA, LD40883P; s 58.3 4.3 0.00015 28.4 1.7 44 205-253 17-60 (87)
204 3mzy_A RNA polymerase sigma-H 58.3 7.4 0.00025 29.8 3.3 50 210-265 109-158 (164)
205 3nw0_A Non-structural maintena 58.2 4.4 0.00015 34.5 2.0 15 69-83 179-193 (238)
206 2ct2_A Tripartite motif protei 57.8 4 0.00014 28.2 1.5 26 116-141 38-68 (88)
207 1iym_A EL5; ring-H2 finger, ub 57.8 8.3 0.00028 23.9 2.9 10 149-158 27-36 (55)
208 2ecn_A Ring finger protein 141 57.7 3.6 0.00012 27.2 1.2 26 116-141 33-60 (70)
209 2p7v_B Sigma-70, RNA polymeras 57.6 3.3 0.00011 27.3 1.0 51 210-261 5-55 (68)
210 3c57_A Two component transcrip 57.6 5 0.00017 28.6 2.0 47 209-261 26-72 (95)
211 2ecn_A Ring finger protein 141 57.5 2.1 7.3E-05 28.4 -0.1 36 131-169 17-60 (70)
212 1e4u_A Transcriptional repress 57.2 6.8 0.00023 27.0 2.6 27 116-142 34-63 (78)
213 1s7o_A Hypothetical UPF0122 pr 57.1 5.5 0.00019 29.6 2.2 49 210-263 22-70 (113)
214 2djb_A Polycomb group ring fin 56.6 8.2 0.00028 25.6 2.9 37 131-169 17-62 (72)
215 1je8_A Nitrate/nitrite respons 56.6 7.2 0.00025 26.9 2.6 50 205-260 16-65 (82)
216 2y43_A E3 ubiquitin-protein li 56.4 4 0.00014 29.2 1.3 42 98-139 23-67 (99)
217 2lfw_A PHYR sigma-like domain; 55.9 5.6 0.00019 31.0 2.2 49 209-262 92-140 (157)
218 1rmd_A RAG1; V(D)J recombinati 55.6 3.9 0.00013 30.2 1.1 45 98-142 24-71 (116)
219 2e6s_A E3 ubiquitin-protein li 55.5 13 0.00045 25.6 3.8 28 131-158 28-56 (77)
220 1xsv_A Hypothetical UPF0122 pr 55.3 6.2 0.00021 29.2 2.2 49 210-263 25-73 (113)
221 2dmi_A Teashirt homolog 3; zin 55.0 5.5 0.00019 28.7 1.9 12 157-168 80-91 (115)
222 1fse_A GERE; helix-turn-helix 54.0 8 0.00027 25.5 2.5 48 207-260 8-55 (74)
223 3fl2_A E3 ubiquitin-protein li 53.2 4 0.00014 30.6 0.9 43 98-140 53-98 (124)
224 2ecm_A Ring finger and CHY zin 53.1 6.3 0.00021 24.4 1.7 10 130-139 44-53 (55)
225 2ckl_A Polycomb group ring fin 53.0 5.2 0.00018 29.1 1.5 29 98-126 16-45 (108)
226 3hcs_A TNF receptor-associated 52.5 4.7 0.00016 32.0 1.2 44 98-141 19-65 (170)
227 2jrp_A Putative cytoplasmic pr 52.4 19 0.00067 25.0 4.2 31 131-169 33-63 (81)
228 3lrq_A E3 ubiquitin-protein li 52.4 3.7 0.00012 29.6 0.5 42 98-139 23-68 (100)
229 3ztg_A E3 ubiquitin-protein li 50.8 4.7 0.00016 28.3 0.9 42 98-139 14-60 (92)
230 2f42_A STIP1 homology and U-bo 50.8 5.5 0.00019 32.3 1.3 47 95-141 104-153 (179)
231 3hct_A TNF receptor-associated 50.6 4.2 0.00014 30.2 0.6 45 98-142 19-66 (118)
232 3vk6_A E3 ubiquitin-protein li 50.2 6.4 0.00022 28.7 1.5 45 100-144 4-52 (101)
233 1z6u_A NP95-like ring finger p 50.1 4.9 0.00017 31.4 1.0 43 98-140 79-124 (150)
234 1x3u_A Transcriptional regulat 50.0 6.3 0.00022 26.5 1.4 45 210-260 16-60 (79)
235 1iuf_A Centromere ABP1 protein 49.5 13 0.00046 28.5 3.4 51 205-255 6-60 (144)
236 1tty_A Sigma-A, RNA polymerase 49.4 5.2 0.00018 27.9 0.9 51 210-261 18-68 (87)
237 2jn6_A Protein CGL2762, transp 48.2 12 0.00039 26.5 2.7 42 208-253 3-45 (97)
238 1g25_A CDK-activating kinase a 48.2 8.3 0.00028 25.0 1.8 28 116-143 27-57 (65)
239 2yur_A Retinoblastoma-binding 47.8 21 0.00072 23.7 3.9 25 131-157 17-42 (74)
240 2ect_A Ring finger protein 126 47.6 18 0.00062 24.1 3.6 13 130-142 53-65 (78)
241 2ckl_B Ubiquitin ligase protei 47.4 6.1 0.00021 31.2 1.1 43 97-139 54-100 (165)
242 2xeu_A Ring finger protein 4; 47.2 3.6 0.00012 26.4 -0.2 27 116-142 29-57 (64)
243 2lv7_A Calcium-binding protein 47.1 32 0.0011 24.4 5.0 48 206-253 25-79 (100)
244 2ep4_A Ring finger protein 24; 46.9 12 0.00043 24.7 2.6 42 98-139 16-62 (74)
245 3ng2_A RNF4, snurf, ring finge 45.8 3.6 0.00012 27.2 -0.4 26 116-141 36-63 (71)
246 2rnj_A Response regulator prot 45.6 4.9 0.00017 28.3 0.3 48 207-260 26-73 (91)
247 2gvi_A Conserved hypothetical 45.2 5.2 0.00018 33.1 0.4 28 99-126 174-202 (204)
248 2ecj_A Tripartite motif-contai 45.0 9.5 0.00032 23.8 1.6 10 116-125 34-43 (58)
249 2ea6_A Ring finger protein 4; 44.9 4.3 0.00015 26.5 -0.1 24 116-139 41-66 (69)
250 2bay_A PRE-mRNA splicing facto 44.2 8.2 0.00028 25.1 1.2 48 97-144 3-53 (61)
251 1or7_A Sigma-24, RNA polymeras 43.9 10 0.00036 30.0 2.1 47 211-262 141-187 (194)
252 3ulq_B Transcriptional regulat 43.5 12 0.00042 26.3 2.2 47 206-258 25-71 (90)
253 1rp3_A RNA polymerase sigma fa 42.6 12 0.0004 30.7 2.2 47 211-262 188-234 (239)
254 1chc_A Equine herpes virus-1 r 42.3 16 0.00054 23.7 2.5 25 116-140 25-51 (68)
255 2xi8_A Putative transcription 41.0 8 0.00027 24.6 0.7 24 234-257 17-40 (66)
256 2d8s_A Cellular modulator of i 40.4 35 0.0012 23.4 4.1 17 151-167 42-68 (80)
257 3knv_A TNF receptor-associated 39.9 3.1 0.00011 32.3 -1.7 44 97-140 31-77 (141)
258 2jpc_A SSRB; DNA binding prote 39.7 7 0.00024 24.8 0.3 27 234-260 16-42 (61)
259 2r1j_L Repressor protein C2; p 39.4 8.8 0.0003 24.5 0.8 24 234-257 21-44 (68)
260 2yu4_A E3 SUMO-protein ligase 39.3 8.8 0.0003 27.2 0.8 32 96-127 6-38 (94)
261 2q0o_A Probable transcriptiona 38.9 17 0.0006 30.2 2.8 49 206-260 171-219 (236)
262 2ecl_A Ring-box protein 2; RNF 38.9 11 0.00037 25.9 1.2 21 148-168 47-75 (81)
263 2ysj_A Tripartite motif-contai 37.9 7.9 0.00027 24.9 0.3 11 116-126 39-49 (63)
264 2ea5_A Cell growth regulator w 37.8 25 0.00084 23.2 2.8 21 119-141 38-58 (68)
265 1zug_A Phage 434 CRO protein; 37.3 9.8 0.00034 24.6 0.8 24 234-257 19-42 (71)
266 2yho_A E3 ubiquitin-protein li 36.9 21 0.00073 24.3 2.5 41 99-141 20-61 (79)
267 2ee8_A Protein ODD-skipped-rel 36.6 13 0.00044 26.1 1.4 11 158-168 74-84 (106)
268 2e5r_A Dystrobrevin alpha; ZZ 36.2 16 0.00055 24.0 1.6 35 90-126 6-44 (63)
269 3bs3_A Putative DNA-binding pr 36.2 11 0.00037 24.8 0.8 24 234-257 26-49 (76)
270 1x4j_A Ring finger protein 38; 36.1 13 0.00044 24.8 1.2 42 98-139 24-70 (75)
271 1l3l_A Transcriptional activat 35.4 21 0.00072 29.6 2.7 47 207-259 170-216 (234)
272 3bd1_A CRO protein; transcript 35.3 9 0.00031 25.8 0.3 23 234-256 14-36 (79)
273 2x48_A CAG38821; archeal virus 34.6 12 0.00042 23.1 0.9 21 233-253 33-53 (55)
274 1adr_A P22 C2 repressor; trans 34.0 12 0.00041 24.5 0.8 24 234-257 21-44 (76)
275 1rzs_A Antirepressor, regulato 33.9 15 0.00053 23.6 1.3 19 234-252 13-31 (61)
276 2cs3_A Protein C14ORF4, MY039 33.8 18 0.00061 25.1 1.6 50 69-122 14-63 (93)
277 3omt_A Uncharacterized protein 33.5 13 0.00044 24.4 0.8 23 234-256 24-46 (73)
278 2b5a_A C.BCLI; helix-turn-heli 33.2 13 0.00044 24.5 0.8 23 234-256 26-48 (77)
279 1r69_A Repressor protein CI; g 33.1 13 0.00043 23.9 0.7 24 234-257 17-40 (69)
280 2pmy_A RAS and EF-hand domain- 33.1 19 0.00064 24.7 1.7 48 206-253 16-68 (91)
281 3clo_A Transcriptional regulat 32.8 13 0.00044 31.6 0.9 47 209-261 196-242 (258)
282 1jjd_A Metallothionein, SMTA; 32.7 24 0.00082 22.6 2.0 27 159-187 9-36 (55)
283 2eo2_A Adult MALE hypothalamus 32.5 1E+02 0.0035 20.6 5.1 44 204-248 22-68 (71)
284 3kz3_A Repressor protein CI; f 31.7 14 0.00047 24.8 0.8 24 234-257 28-51 (80)
285 3nw0_A Non-structural maintena 31.2 19 0.00064 30.5 1.7 38 130-168 181-228 (238)
286 2yu4_A E3 SUMO-protein ligase 31.1 58 0.002 22.7 4.1 35 157-193 7-41 (94)
287 2kpj_A SOS-response transcript 30.5 15 0.00051 25.6 0.8 24 234-257 25-48 (94)
288 3b7h_A Prophage LP1 protein 11 30.3 15 0.00052 24.2 0.8 23 234-256 23-45 (78)
289 1y7y_A C.AHDI; helix-turn-heli 30.2 16 0.00054 23.8 0.8 23 234-256 29-51 (74)
290 2ctu_A Zinc finger protein 483 29.8 17 0.00056 23.3 0.9 9 72-80 20-28 (73)
291 2a6c_A Helix-turn-helix motif; 29.5 18 0.0006 24.6 1.0 23 234-256 34-56 (83)
292 3t6p_A Baculoviral IAP repeat- 29.4 35 0.0012 30.5 3.2 42 98-141 296-338 (345)
293 2q1z_A RPOE, ECF SIGE; ECF sig 29.4 6.3 0.00022 31.1 -1.6 45 211-261 136-181 (184)
294 2c2l_A CHIP, carboxy terminus 28.2 80 0.0027 26.4 5.3 36 155-193 206-241 (281)
295 2dmj_A Poly (ADP-ribose) polym 27.7 22 0.00076 26.0 1.4 16 68-83 23-38 (106)
296 3t72_q RNA polymerase sigma fa 27.6 33 0.0011 24.6 2.2 53 210-263 19-71 (99)
297 1j9i_A GPNU1 DBD;, terminase s 27.5 22 0.00075 23.3 1.2 21 234-254 5-25 (68)
298 2q24_A Putative TETR family tr 27.0 14 0.00047 29.0 0.1 44 215-260 20-63 (194)
299 2k9q_A Uncharacterized protein 26.6 19 0.00066 23.8 0.8 24 234-257 18-41 (77)
300 1l0o_C Sigma factor; bergerat 26.5 14 0.00047 30.3 0.0 45 210-259 198-242 (243)
301 3qp6_A CVIR transcriptional re 26.5 45 0.0015 28.3 3.3 48 207-260 194-241 (265)
302 2hin_A GP39, repressor protein 26.2 21 0.00073 24.0 0.9 24 234-257 13-36 (71)
303 1jm7_B BARD1, BRCA1-associated 26.1 57 0.002 23.7 3.5 35 131-167 24-65 (117)
304 3fmy_A HTH-type transcriptiona 25.7 24 0.00083 23.3 1.2 42 209-257 9-50 (73)
305 2ef8_A C.ECOT38IS, putative tr 25.4 21 0.00073 23.8 0.8 24 234-257 26-49 (84)
306 1u78_A TC3 transposase, transp 25.3 32 0.0011 25.5 2.0 42 209-255 5-46 (141)
307 1pdn_C Protein (PRD paired); p 25.3 95 0.0033 22.1 4.6 45 209-254 74-126 (128)
308 3t76_A VANU, transcriptional r 24.9 22 0.00074 24.9 0.8 42 209-257 22-63 (88)
309 2wiu_B HTH-type transcriptiona 24.8 23 0.00078 24.0 0.9 24 234-257 28-51 (88)
310 3f6w_A XRE-family like protein 24.2 23 0.00077 23.7 0.8 24 234-257 30-53 (83)
311 1v87_A Deltex protein 2; ring- 23.4 33 0.0011 24.7 1.7 24 116-139 62-92 (114)
312 2ict_A Antitoxin HIGA; helix-t 23.3 21 0.00073 24.7 0.5 23 234-256 24-46 (94)
313 1weo_A Cellulose synthase, cat 22.8 47 0.0016 23.5 2.1 12 128-139 15-26 (93)
314 3asl_A E3 ubiquitin-protein li 22.7 38 0.0013 22.6 1.7 10 149-158 39-48 (70)
315 2l49_A C protein; P2 bacteriop 22.6 29 0.00099 24.1 1.1 24 234-257 20-43 (99)
316 1iq3_A Ralbp1-interacting prot 22.5 41 0.0014 24.3 2.0 47 207-253 12-63 (110)
317 3qq6_A HTH-type transcriptiona 22.1 27 0.00091 23.4 0.8 21 234-254 26-46 (78)
318 1lmb_3 Protein (lambda repress 22.1 26 0.00089 24.0 0.8 24 234-257 33-56 (92)
319 1etf_B REV peptide; complex (R 21.9 34 0.0012 18.3 1.0 12 254-265 8-19 (26)
320 3i5g_B Myosin regulatory light 21.9 1E+02 0.0034 23.3 4.3 40 207-246 6-50 (153)
321 2yt5_A Metal-response element- 21.7 52 0.0018 21.3 2.2 52 70-126 6-61 (66)
322 3odc_A Poly [ADP-ribose] polym 21.7 29 0.00099 25.6 1.0 15 68-82 17-31 (111)
323 3szt_A QCSR, quorum-sensing co 21.6 42 0.0014 27.9 2.1 46 207-258 172-217 (237)
324 3s8q_A R-M controller protein; 21.6 28 0.00094 23.3 0.8 23 234-256 27-49 (82)
325 2l8n_A Transcriptional repress 21.6 36 0.0012 22.5 1.3 24 233-256 11-34 (67)
326 2kvr_A Ubiquitin carboxyl-term 21.4 45 0.0016 25.2 2.1 24 233-256 71-94 (130)
327 2lo3_A SAGA-associated factor 21.3 27 0.00093 20.9 0.6 15 71-85 18-32 (44)
328 3od8_A Poly [ADP-ribose] polym 21.1 23 0.00078 26.5 0.3 20 124-143 33-52 (116)
329 2d8v_A Zinc finger FYVE domain 20.9 23 0.00079 23.6 0.2 13 116-128 27-39 (67)
330 1uxc_A FRUR (1-57), fructose r 20.8 27 0.00093 22.9 0.6 23 234-256 3-25 (65)
331 2vpb_A Hpygo1, pygopus homolog 20.6 33 0.0011 22.6 1.0 27 131-157 10-39 (65)
332 1ovx_A ATP-dependent CLP prote 20.6 72 0.0025 21.2 2.6 34 158-192 19-52 (67)
333 1fi6_A EH domain protein REPS1 20.6 42 0.0014 23.1 1.6 42 211-252 3-49 (92)
334 2dip_A Zinc finger SWIM domain 20.4 40 0.0014 24.3 1.5 11 116-126 54-64 (98)
335 1neq_A DNA-binding protein NER 20.2 36 0.0012 22.8 1.1 22 234-255 25-46 (74)
336 2k16_A Transcription initiatio 20.2 40 0.0014 22.6 1.4 48 71-126 19-68 (75)
337 2ds5_A CLPX, ATP-dependent CLP 20.2 78 0.0027 19.8 2.6 32 158-190 12-43 (51)
338 3shb_A E3 ubiquitin-protein li 20.2 56 0.0019 22.3 2.1 8 150-157 48-55 (77)
No 1
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=100.00 E-value=4.7e-35 Score=244.27 Aligned_cols=159 Identities=58% Similarity=1.134 Sum_probs=137.8
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcceeeCCeeccccccccccCcCCCCCCCCCCCCCceecc
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRA 148 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~ 148 (306)
..++|++|+++|.+.+++.++|+.||+.||+|..|+++|.+..|.++|++||+.||.++|+++|.+|+++|.+.+.++.+
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a 84 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRA 84 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEEc
Confidence 35799999999999887889999999999999999999998889999999999999999999999999999988888899
Q ss_pred cCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhccCCCCCCCCCCCCCCcccchHhHHHHHhccccCCC
Q psy4325 149 QDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPNKRPRTTITAKQLETLKMAYNTSPK 228 (306)
Q Consensus 149 ~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~kr~rt~~s~~q~~~Le~~F~~~~~ 228 (306)
.++.||++||+|..|++.|..|+.|++..++++||..||.++++...+ ..+.+++|+.++..|++.|+..|+.++|
T Consensus 85 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~----~~~~~rprt~~~~~q~~~l~~~f~~~~~ 160 (169)
T 2rgt_A 85 QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSG----GSGGSGGGTPMVAASPERHDGGLQANPV 160 (169)
T ss_dssp TTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC--------------EEEECCCCEECCSSCCCCCC
T ss_pred CCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCC----CCCCcCCCCcccHHHHHHHHHHHhCCCC
Confidence 999999999999999999987888877778999999999998876221 2456899999999999999999999999
Q ss_pred CCH
Q psy4325 229 PAR 231 (306)
Q Consensus 229 p~~ 231 (306)
|..
T Consensus 161 ~~~ 163 (169)
T 2rgt_A 161 EVQ 163 (169)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
No 2
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=1.5e-29 Score=213.39 Aligned_cols=125 Identities=70% Similarity=1.418 Sum_probs=115.5
Q ss_pred CCCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcceeeCCeeccccccccccCcCCCCCCCCCCCCCcee
Q psy4325 67 IASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVR 146 (306)
Q Consensus 67 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 146 (306)
....++|.+|+++|.+.+++.++|+.||+.||+|..|+++|.+..|.++|++||+.||.++|+++|.+|+++|.+.+.++
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~ 136 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR 136 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEE
Confidence 34568999999999998888899999999999999999999988899999999999999999999999999998877777
Q ss_pred cccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHh
Q psy4325 147 RAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191 (306)
Q Consensus 147 ~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~ 191 (306)
.+.++.||++||+|..|++.|..|+.|+...++++||..||.++.
T Consensus 137 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 137 RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp EETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred ecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 899999999999999999999878888777789999999998764
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.96 E-value=1.6e-29 Score=202.06 Aligned_cols=124 Identities=34% Similarity=0.847 Sum_probs=113.1
Q ss_pred CCCCccCCCeeccceeeeecCccccccCcccCcCCCCCC--C-cceeeCCeeccccccccccCc--CCCCCCCCCCCCCc
Q psy4325 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--E-KCFARNGLLFCKEDFFKRFGT--KCAGCEMGIPPTQV 144 (306)
Q Consensus 70 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~-~~f~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~~ 144 (306)
.++|++|+++|.+.+++.++|+.||+.||+|..|+.+|. + .+|.++|++||+.||.+++++ +|.+|+++|.+.+.
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 468999999999987788999999999999999999996 3 455999999999999999999 99999999988777
Q ss_pred eecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 145 VRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 145 ~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
++.+.++.||++||+|..|+++|..|..|+. .++++||..||.+++++.
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHHHHHH
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHHhhcc
Confidence 8899999999999999999999977787776 589999999999998864
No 4
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=193.78 Aligned_cols=121 Identities=25% Similarity=0.624 Sum_probs=109.3
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCCCCCCCCCCCceec
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRR 147 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 147 (306)
..++|++|+++|.+++++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++++++|.+|+++|.+.+.+|.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 81 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVT 81 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEE
Confidence 35799999999998777789999999999999999999988655 99999999999999999999999999998777789
Q ss_pred ccCcccc--CCCcccccCCCCCCCCCceeeccCCcccccchhHHHh
Q psy4325 148 AQDLVYH--LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAK 191 (306)
Q Consensus 148 ~~~~~~H--~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~ 191 (306)
+.++.|| ++||+|..|+++|. +..|+. .++++||..++.+++
T Consensus 82 a~~~~~H~~~~CF~C~~C~~~l~-~~~f~~-~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 82 YNNFSWHASTECFLCSCCSKCLI-GQKFMP-VEGMVFCSVECKKRM 125 (126)
T ss_dssp ETTEEEESSTTTSBCTTTCCBCT-TSEEEE-ETTEEESSHHHHHSC
T ss_pred CCCCEeeCCCCCcCcCCCCCccC-CCeeEe-ECCEEcchHHhhhhc
Confidence 9999999 99999999999996 676765 689999998877654
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.94 E-value=5.2e-28 Score=204.92 Aligned_cols=124 Identities=40% Similarity=0.948 Sum_probs=112.4
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCC---cceeeCCeeccccccccccCc--CCCCCCCCCCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE---KCFARNGLLFCKEDFFKRFGT--KCAGCEMGIPPTQ 143 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~---~~f~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~ 143 (306)
..++|++|+++|.+.+++.++++.||+.||+|..|+++|.. .+|.++|++||+.||.++|++ +|..|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 45799999999999888889999999999999999999974 566999999999999999999 7999999999878
Q ss_pred ceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 144 VVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 144 ~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
.++.+.++.||++||+|..|++.|..|..|+. .++++||..||.+++++
T Consensus 84 ~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 84 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHY-INGSLFCEHDRPTALIN 132 (188)
T ss_dssp EEEEETTEEECGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGCCTTTC-
T ss_pred EEEEcCCCEEeCCCCeECCCCCCCCCCCeEEE-ECCeEECHHHHHHHhcc
Confidence 88899999999999999999999977777766 68899999999888765
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=8.8e-26 Score=191.84 Aligned_cols=124 Identities=23% Similarity=0.534 Sum_probs=108.9
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcC----------------
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTK---------------- 131 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~---------------- 131 (306)
..++|..|+++|...+++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++|+++
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~ 85 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 85 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCC
Confidence 45789999999986666789999999999999999999987655 8999999999999999876
Q ss_pred --------------------------------CCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCC
Q psy4325 132 --------------------------------CAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDR 179 (306)
Q Consensus 132 --------------------------------C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~ 179 (306)
|..|+++|...+.+ .+.++.||++||+|..|+++|..+ .|+ ..++
T Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~-~~~-~~~g 162 (192)
T 1b8t_A 86 ESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKV-IGAGKSWHKSCFRCAKCGKSLEST-TLA-DKDG 162 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCE-EETTEEECTTTCBCTTTCCBCCSS-SEE-EETT
T ss_pred cccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEE-ecCCCccchhcCCccccCCCCCCC-ccc-ccCC
Confidence 77899999876665 599999999999999999999654 465 4799
Q ss_pred cccccchhHHHhhccC
Q psy4325 180 KLVCKPDYEAAKAKDG 195 (306)
Q Consensus 180 ~~~C~~c~~~~~~~~~ 195 (306)
++||..||.+++++..
T Consensus 163 ~~yC~~cy~~~f~~kc 178 (192)
T 1b8t_A 163 EIYCKGCYAKNFGPKG 178 (192)
T ss_dssp EEEEHHHHHHHTCCCC
T ss_pred EEeCHHHHHHhcCCcC
Confidence 9999999999998743
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.91 E-value=1.3e-24 Score=165.58 Aligned_cols=96 Identities=26% Similarity=0.550 Sum_probs=87.9
Q ss_pred CCCCCccCCCeec-cceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCCCCCCCCCCCcee
Q psy4325 69 SIPKCGGCGDLIL-DRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVR 146 (306)
Q Consensus 69 ~~~~C~~C~~~I~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 146 (306)
+.++|.+|+++|. +++++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++++++|.+|+++|...+.+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 83 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNV 83 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEE
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEE
Confidence 4679999999997 4677789999999999999999999987644 9999999999999999999999999998767778
Q ss_pred cccCccccCCCcccccCC
Q psy4325 147 RAQDLVYHLNCFACVMCA 164 (306)
Q Consensus 147 ~~~~~~~H~~CF~C~~C~ 164 (306)
.+.++.||++||+|..|+
T Consensus 84 ~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 84 EYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ESSSCEEETTTCCCTTCC
T ss_pred EeCCcchHHhCCCCCCCC
Confidence 999999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=1.4e-21 Score=153.80 Aligned_cols=111 Identities=31% Similarity=0.645 Sum_probs=93.5
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCC---CcceeeCCeeccccccccccCc--CCCCCCCCCCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA---EKCFARNGLLFCKEDFFKRFGT--KCAGCEMGIPPTQ 143 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~---~~~f~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~ 143 (306)
..++|++|+++|.+.+++.++++.||+.||+|..|+.+|. ..+|.++|++||..||.++|++ +|.+|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 5679999999999988778999999999999999999996 2466999999999999999999 9999999998754
Q ss_pred ceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhccCC
Q psy4325 144 VVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGN 196 (306)
Q Consensus 144 ~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~~~ 196 (306)
+ .+.++ .+..|+.|+. .++++||..||.+.+.+.|.
T Consensus 84 ~--~~~g~--------------~~l~g~~f~~-~~~~~yC~~~~~~~~~~~g~ 119 (122)
T 1m3v_A 84 V--MVVGE--------------PTLMGGEFGD-EDERLITRLENTQFDAANGI 119 (122)
T ss_dssp S--SSSSS--------------SSCCSCTTCC-TTCCCCEECTTTTTTCCSCC
T ss_pred e--EEcCC--------------cCCCCCccEe-cCCEeEccCcchhchhhcCC
Confidence 3 34442 2335777755 78999999999998877554
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4.3e-20 Score=143.57 Aligned_cols=106 Identities=29% Similarity=0.577 Sum_probs=88.1
Q ss_pred CCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCC---cceeeCCeeccccccccccCcCCCCCCCCCCCCCcee
Q psy4325 70 IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE---KCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVR 146 (306)
Q Consensus 70 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~---~~f~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~ 146 (306)
.++|.+|+++|.+.+++.++++.||+.||+|..|+++|.. .+|.++|++||+.||.++|+++|..|.. +.+|
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~-----~~~~ 77 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG-----GDVM 77 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS-----CSCC
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC-----Ccee
Confidence 4689999999999888889999999999999999999974 4669999999999999999999998862 1222
Q ss_pred cccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhccCC
Q psy4325 147 RAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGN 196 (306)
Q Consensus 147 ~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~~~ 196 (306)
. |...+..|+.|+. .++++||..|+.+..++.|.
T Consensus 78 ~---------------~~~~~~~g~~f~~-~~~~~~C~~~~~~~~~~~g~ 111 (114)
T 1j2o_A 78 V---------------VGEPTLMGGEFGD-EDERLITRLENTQFDAANGI 111 (114)
T ss_dssp C---------------SSCSSTTSSBCCC-SSSCCCEEEECTTCCCTTSS
T ss_pred E---------------cCCccCCCCeeEE-cCCEeecchhhhccccccCC
Confidence 1 4566667888754 78999999999888777543
No 10
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.79 E-value=2.1e-20 Score=158.65 Aligned_cols=125 Identities=18% Similarity=0.303 Sum_probs=104.6
Q ss_pred cccccCCCCccc-ccchhhhcccccccccC---CCcccc-CCccccCCcccccccCCCCC--------------------
Q psy4325 15 GLAVQRGNGLTV-GICASKLHDLLHEAHAG---SSSSFS-SSFNDVDYEGIMPVYMPIAS-------------------- 69 (306)
Q Consensus 15 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------- 69 (306)
+..+..|+.+|. +....++++.||++||. |...|. ..|+..++.+||..+|...+
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~ 86 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCc
Confidence 345888998886 66677999999999995 455774 55888999999977765322
Q ss_pred ----------------------------CCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeecc
Q psy4325 70 ----------------------------IPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFC 120 (306)
Q Consensus 70 ----------------------------~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC 120 (306)
.++|.+|+++|.+.+++.++++.||+.||+|..|+++|.+. ++.++|++||
T Consensus 87 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC 166 (192)
T 1b8t_A 87 SLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYC 166 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEE
T ss_pred ccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeC
Confidence 23499999999976666799999999999999999999764 4599999999
Q ss_pred ccccccccCcCCCCCCCCC
Q psy4325 121 KEDFFKRFGTKCAGCEMGI 139 (306)
Q Consensus 121 ~~cy~~~~~~~C~~C~~~I 139 (306)
+.||.++|+++|.+|++++
T Consensus 167 ~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 167 KGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp HHHHHHHTCCCCCCCCCCC
T ss_pred HHHHHHhcCCcCCCCCCcc
Confidence 9999999999999999986
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=128.60 Aligned_cols=64 Identities=38% Similarity=0.554 Sum_probs=59.9
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
...++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.||++||||||+|+|+..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 4467889999999999999999999999999999999999999999999999999999997654
No 12
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.6e-20 Score=132.99 Aligned_cols=64 Identities=30% Similarity=0.408 Sum_probs=59.8
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
..+.++.|+.|+..|+.+||..|..++||+..+++.||..|||++.||+|||||||+|+||..+
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 3456788999999999999999999999999999999999999999999999999999998655
No 13
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.77 E-value=2.6e-19 Score=129.15 Aligned_cols=68 Identities=26% Similarity=0.380 Sum_probs=62.2
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhcCC
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGR 268 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~~~ 268 (306)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.||+|||||||+|+|+.....+.
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccC
Confidence 34567889999999999999999999999999999999999999999999999999999998776543
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=8e-20 Score=129.45 Aligned_cols=64 Identities=30% Similarity=0.505 Sum_probs=59.6
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
...++.|+.|+..|+.+||..|..++||+..+++.||..+||++.||++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 4467889999999999999999999999999999999999999999999999999999986543
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.8e-19 Score=130.04 Aligned_cols=65 Identities=34% Similarity=0.552 Sum_probs=60.9
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
...++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.+|++||||||+|+|+..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 45678999999999999999999999999999999999999999999999999999999976644
No 16
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=3.5e-19 Score=125.37 Aligned_cols=63 Identities=27% Similarity=0.403 Sum_probs=59.9
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578899999999999999999999999999999999999999999999999999999987654
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=131.49 Aligned_cols=64 Identities=45% Similarity=0.711 Sum_probs=59.8
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
....++.|+.|+..|+.+|+..|..++||+..+++.||..|||++.||++||||||+|+||...
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 3456788999999999999999999999999999999999999999999999999999998654
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=2.4e-19 Score=126.97 Aligned_cols=64 Identities=28% Similarity=0.368 Sum_probs=59.6
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
...++.|++|+..|+.+|+..|..++||+..+++.||..+||++.||++||||||+|+|+....
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 3467789999999999999999999999999999999999999999999999999999997653
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=128.93 Aligned_cols=65 Identities=42% Similarity=0.556 Sum_probs=61.0
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
...++.|+.|+..|+..|+..|..++||+..+++.||..+||++.||++||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999977654
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-19 Score=128.58 Aligned_cols=65 Identities=32% Similarity=0.460 Sum_probs=60.2
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
....++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.||++||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 34567889999999999999999999999999999999999999999999999999999986553
No 21
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=4.5e-19 Score=128.90 Aligned_cols=65 Identities=35% Similarity=0.541 Sum_probs=60.9
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
...++.|+.|+..|+.+||..|..++||+..++..||..|||++.||+|||||||+|+|+..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999887654
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-19 Score=128.23 Aligned_cols=64 Identities=30% Similarity=0.496 Sum_probs=59.5
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
....++.|+.|+..|+.+|+..|..++||+..+++.||..+||++.||++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 3456788999999999999999999999999999999999999999999999999999998554
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-19 Score=128.40 Aligned_cols=64 Identities=30% Similarity=0.574 Sum_probs=59.9
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.||++||||||+|+|+..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 4567899999999999999999999999999999999999999999999999999999987653
No 24
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=2.1e-19 Score=124.57 Aligned_cols=60 Identities=37% Similarity=0.459 Sum_probs=56.2
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 578899999999999999999999999999999999999999999999999999999853
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=1.8e-19 Score=126.81 Aligned_cols=63 Identities=32% Similarity=0.431 Sum_probs=59.3
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
.++.|+.|+..|+..|+..|..++||+..++..||..+||+++||++||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 467899999999999999999999999999999999999999999999999999999976544
No 26
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.75 E-value=5.8e-19 Score=127.33 Aligned_cols=66 Identities=29% Similarity=0.425 Sum_probs=61.3
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
....++.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+..+..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 345678899999999999999999999999999999999999999999999999999999987654
No 27
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=2e-19 Score=123.83 Aligned_cols=58 Identities=40% Similarity=0.696 Sum_probs=53.3
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999997
No 28
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=4.8e-19 Score=132.31 Aligned_cols=69 Identities=28% Similarity=0.420 Sum_probs=61.5
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhcCCC
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRT 269 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~~~~ 269 (306)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.||+|||||||+|+|+........
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999987765443
No 29
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.9e-19 Score=121.81 Aligned_cols=58 Identities=38% Similarity=0.586 Sum_probs=55.7
Q ss_pred CCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.||++||||||+|+|++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 4789999999999999999999999999999999999999999999999999999973
No 30
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=1.9e-19 Score=124.40 Aligned_cols=59 Identities=31% Similarity=0.417 Sum_probs=53.0
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 56889999999999999999999999999999999999999999999999999999985
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=5.5e-19 Score=126.11 Aligned_cols=64 Identities=34% Similarity=0.536 Sum_probs=59.7
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
...++.|+.|+..|+..||..|..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4567889999999999999999999999999999999999999999999999999999986543
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=6.2e-19 Score=124.10 Aligned_cols=63 Identities=29% Similarity=0.405 Sum_probs=59.1
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 467899999999999999999999999999999999999999999999999999999976543
No 33
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=5.2e-19 Score=125.61 Aligned_cols=59 Identities=25% Similarity=0.243 Sum_probs=55.2
Q ss_pred CCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
..+++||.+|+.+|+..|..++||+..+|++||..+||+++||+|||||||+|+|+...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999998644
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=5.3e-19 Score=121.32 Aligned_cols=58 Identities=36% Similarity=0.535 Sum_probs=55.5
Q ss_pred CCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999984
No 35
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-19 Score=130.39 Aligned_cols=64 Identities=28% Similarity=0.419 Sum_probs=59.6
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.||+|||||||+|+|+..+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999999999999999999999999999999998654
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.74 E-value=3.8e-19 Score=125.22 Aligned_cols=63 Identities=33% Similarity=0.529 Sum_probs=59.4
Q ss_pred CCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 203 PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 203 ~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 357889999999999999999999999999999999999999999999999999999997654
No 37
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.7e-19 Score=127.66 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=59.7
Q ss_pred CCCCCCCCcccchHhHHHHHhccccC----CCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTS----PKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~----~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
....++.|+.|+..|+.+|+..|+.+ +||+..++++||..+||++.||+|||||||+|+|+...
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 45577899999999999999999999 99999999999999999999999999999999999543
No 38
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=3.4e-19 Score=129.17 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=57.4
Q ss_pred CCCCCCCCcccchHhHHHHHhcccc----CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNT----SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~----~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
..+.++.||.|+..|+..|+..|+. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4457889999999999999999999 999999999999999999999999999999999875
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=6.3e-19 Score=130.49 Aligned_cols=64 Identities=30% Similarity=0.431 Sum_probs=55.5
Q ss_pred CCCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 200 GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 200 ~~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
.....++.|+.|+..|+.+||..|..++||+..+|..||..+||++++|+|||||||+|+|+..
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 3455778999999999999999999999999999999999999999999999999999999864
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=4.3e-19 Score=121.79 Aligned_cols=58 Identities=41% Similarity=0.608 Sum_probs=50.7
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
.|+.|+..|+..|+..|..++||+..++..||..+||+++||++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999998653
No 41
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=8.6e-19 Score=125.87 Aligned_cols=67 Identities=40% Similarity=0.539 Sum_probs=61.4
Q ss_pred CCCCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 199 DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 199 ~~~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
+...+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|++||||||+|+|+..+.
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 3445667889999999999999999999999999999999999999999999999999999986554
No 42
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.73 E-value=1.2e-18 Score=127.00 Aligned_cols=64 Identities=39% Similarity=0.628 Sum_probs=59.1
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
..+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3456788999999999999999999999999999999999999999999999999999999765
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.73 E-value=7.9e-19 Score=118.68 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=51.0
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
|.|+..|+..|+..|..++||+..+|..||..+||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 44
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=4.2e-19 Score=124.24 Aligned_cols=60 Identities=45% Similarity=0.791 Sum_probs=57.3
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.||++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 578899999999999999999999999999999999999999999999999999998854
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.3e-18 Score=131.14 Aligned_cols=66 Identities=27% Similarity=0.445 Sum_probs=57.2
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
....++.|+.|+..|+.+|+..|..++||+..++..||..|||+++||+|||||||+|+|+..+.+
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~g 96 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 96 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhccC
Confidence 345678899999999999999999999999999999999999999999999999999999977643
No 46
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=122.18 Aligned_cols=60 Identities=40% Similarity=0.690 Sum_probs=57.3
Q ss_pred CCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678999999999999999999999999999999999999999999999999999998654
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=123.00 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=56.6
Q ss_pred CCCcccchHhHHHHHhcccc-CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 206 RPRTTITAKQLETLKMAYNT-SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~~-~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
+.|+.|+..|+.+|+..|.. ++||+..+++.||..+||+++||++||||||+|+|+..+.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 56899999999999999996 9999999999999999999999999999999999997643
No 48
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.73 E-value=9.5e-19 Score=127.39 Aligned_cols=62 Identities=31% Similarity=0.419 Sum_probs=54.6
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
...++.|+.|+..|+.+||..|..++||+..+++.||..+||++++|+|||||||+|+||..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 44678899999999999999999999999999999999999999999999999999999864
No 49
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=118.23 Aligned_cols=57 Identities=30% Similarity=0.480 Sum_probs=54.7
Q ss_pred CCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999975
No 50
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.72 E-value=1e-18 Score=147.73 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=106.7
Q ss_pred ccccCCCCcccccc-hhhhcccccccccCC---Ccccc---CCccccCCcccccccCCCCCCC--CCccCCCeeccc-ee
Q psy4325 16 LAVQRGNGLTVGIC-ASKLHDLLHEAHAGS---SSSFS---SSFNDVDYEGIMPVYMPIASIP--KCGGCGDLILDR-FI 85 (306)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~-~~ 85 (306)
..+..|+.+|.+.. ..++++.||++||.| ...|. ..|+..++.+||..+|...+.+ +|..|+++|.+. .+
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~ 85 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELV 85 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEE
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEE
Confidence 45788899988763 678999999999955 55775 4799999999999999876666 799999999863 46
Q ss_pred eeecCccccccCcccCcCCCCCC-Ccce-eeCCeeccccccccccCcCCCCCCCCC----CCCCcee----cccCccccC
Q psy4325 86 LKVLERTWHARCLKCHECGAPLA-EKCF-ARNGLLFCKEDFFKRFGTKCAGCEMGI----PPTQVVR----RAQDLVYHL 155 (306)
Q Consensus 86 ~~~~~~~~H~~Cf~C~~C~~~l~-~~~f-~~~g~~yC~~cy~~~~~~~C~~C~~~I----~~~~~~~----~~~~~~~H~ 155 (306)
+.++++.||+.||+|..|+++|. +..| ..++++||..||.++++++|...+..- ...++.+ ...+..||+
T Consensus 86 i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~~~~~~~~~~~v~vvgep~l~g~~~~~ 165 (188)
T 1rut_X 86 MRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGD 165 (188)
T ss_dssp EEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC----------------CCCEECCCCEETTCCCCC
T ss_pred EEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCCCCcccccCCcccccCCCcccCCCCCC
Confidence 67999999999999999999995 5544 889999999999999999998776521 1111111 244566777
Q ss_pred CCccc
Q psy4325 156 NCFAC 160 (306)
Q Consensus 156 ~CF~C 160 (306)
...+.
T Consensus 166 ~~~r~ 170 (188)
T 1rut_X 166 EDERL 170 (188)
T ss_dssp TTEEE
T ss_pred CCCce
Confidence 66654
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=3.2e-18 Score=125.83 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=54.4
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
.+++..|+.+||..|..++||+..+|++||..|||+++||+|||||||+|||++....
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999999866544
No 52
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2.8e-18 Score=122.40 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=57.1
Q ss_pred CCCCcccchHhHHHHHhccc-cCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 205 KRPRTTITAKQLETLKMAYN-TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F~-~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
.+.|+.|+..|+.+|+..|. .++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 46789999999999999999 59999999999999999999999999999999999997653
No 53
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=7.4e-19 Score=127.19 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=55.9
Q ss_pred CCCCCCCCcccchHhHHHHHhcccc-----CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNT-----SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
....++.||.|+..|+..|+ .|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34567899999999999999 7999 999999999999999999999999999999999875
No 54
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=122.90 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=56.2
Q ss_pred CCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
+.|++||..|+.+|+..|..++||+..++..||..+||+++||++||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456789999999999999999999999999999999999999999999999999997653
No 55
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.7e-18 Score=121.85 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=59.0
Q ss_pred CCCCCCCcccchHhHHHHHhcccc---CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNT---SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
...++.|+.|+..|+..|+.+|.. ++||+..+++.||..+||++.||++||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 456788999999999999999976 9999999999999999999999999999999999986553
No 56
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=1.4e-18 Score=119.67 Aligned_cols=58 Identities=19% Similarity=0.424 Sum_probs=48.5
Q ss_pred CCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 203 PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 203 ~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4568899999999999999999999999999999999999999999999999999975
No 57
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=8.4e-18 Score=122.46 Aligned_cols=77 Identities=25% Similarity=0.558 Sum_probs=68.8
Q ss_pred CCeeccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 115 NGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 115 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
++.+||+.||.++++++|..|+++|. +.++.+.++.||++||+|..|+++|..|..|++..++++||..||.+++++
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCC--SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred CCCccchhHHhhhcCCcCccCCCCcC--ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 36799999999999999999999998 345689999999999999999999977777764578999999999999886
No 58
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.71 E-value=1.2e-18 Score=138.58 Aligned_cols=114 Identities=12% Similarity=0.215 Sum_probs=96.8
Q ss_pred cccCCCCccccc-chhhhcccccccccCC---Ccccc---CCccccCCcccccccCCCCCCC--CCccCCCeecc-ceee
Q psy4325 17 AVQRGNGLTVGI-CASKLHDLLHEAHAGS---SSSFS---SSFNDVDYEGIMPVYMPIASIP--KCGGCGDLILD-RFIL 86 (306)
Q Consensus 17 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~-~~~~ 86 (306)
.+..|+.+|.+. ...++++.||++||.| ..+|. ..|+..++.+||..+|.....+ +|..|+++|.+ +.++
T Consensus 4 ~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~ 83 (131)
T 2xjy_A 4 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTM 83 (131)
T ss_dssp BBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEE
T ss_pred cCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeE
Confidence 467788888877 4679999999999955 55774 4689999999999999877777 99999999986 3466
Q ss_pred eecCccccccCcccCcCCCCCC-Cc-ceeeCCeeccccccccccCc
Q psy4325 87 KVLERTWHARCLKCHECGAPLA-EK-CFARNGLLFCKEDFFKRFGT 130 (306)
Q Consensus 87 ~~~~~~~H~~Cf~C~~C~~~l~-~~-~f~~~g~~yC~~cy~~~~~~ 130 (306)
.++++.||+.||+|..|+++|. +. ++..+|++||..||.+++++
T Consensus 84 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 84 RVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp EETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred eeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 8999999999999999999994 55 44889999999999887754
No 59
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-18 Score=124.56 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=58.0
Q ss_pred CCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 203 PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 203 ~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
.....|++|+..|+.+|+..|..++||+..+++.||..+||+++||++||||||+|+|+....
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 345568999999999999999999999999999999999999999999999999999986543
No 60
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=121.77 Aligned_cols=79 Identities=23% Similarity=0.459 Sum_probs=71.9
Q ss_pred CCcccccccCCCCCCCCCccCCCeec-cceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCC
Q psy4325 56 DYEGIMPVYMPIASIPKCGGCGDLIL-DRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 56 ~~~~~~~~~~~~~~~~~C~~C~~~I~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~ 133 (306)
++.+||..+|...+.++|.+|+++|. ++.++.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 46789999999889999999999999 4667788999999999999999999988666 899999999999999999996
Q ss_pred C
Q psy4325 134 G 134 (306)
Q Consensus 134 ~ 134 (306)
+
T Consensus 81 ~ 81 (82)
T 2ehe_A 81 S 81 (82)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=9e-18 Score=122.58 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=71.1
Q ss_pred CCeeccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 115 NGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 115 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
++.+||+.||.++++++|..|+++|...+.++.+.++.||++||+|..|+++|..+ .|+. .++.+||..||.+++++.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~~~~yC~~cy~~~f~~~ 78 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG-SFFP-KGEDFYCVTCHETKFASG 78 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTS-CEEE-ETTEEEEHHHHHHHTSCC
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCC-ccEe-eCCEEECHHHHHHHhCCC
Confidence 46899999999999999999999998777778999999999999999999999754 5555 699999999999999875
Q ss_pred CC
Q psy4325 195 GN 196 (306)
Q Consensus 195 ~~ 196 (306)
+.
T Consensus 79 ~~ 80 (82)
T 1x63_A 79 PS 80 (82)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 62
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-18 Score=123.47 Aligned_cols=77 Identities=25% Similarity=0.430 Sum_probs=69.0
Q ss_pred CCeeccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 115 NGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 115 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
+|++||+.||.++++++|.+|+++|...+.++.+.++.||++||+|..|+++|. +..|+. .++++||..||.+++++
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~-~~~~~~C~~c~~~~~~~ 77 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA-DEPFTC-QDSELLCNDCYCSAFSS 77 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS-SCCEEE-ETTEEEETTTSSCCGGG
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC-CCccEe-eCCEEECHHHHhhhcCC
Confidence 589999999999999999999999986667778999999999999999999996 455654 78999999999888876
No 63
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=6e-18 Score=120.76 Aligned_cols=62 Identities=24% Similarity=0.484 Sum_probs=58.1
Q ss_pred CCCCcccchHhHHHHHhcc---ccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 205 KRPRTTITAKQLETLKMAY---NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F---~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
++.|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6789999999999999999 9999999999999999999999999999999999999865543
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=4.7e-18 Score=115.87 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=55.5
Q ss_pred CCCCCCCCcccchHhHHHHHhcccc-CCCCCHHHHHHHHHhhCCCccchhcccccchhHH
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNT-SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~-~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~ 259 (306)
.+..+|.||.|+.+|+..|+..|+. ++||+.+.|+.||.+|||++++|+|||||||.-.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 4467899999999999999999999 9999999999999999999999999999999863
No 65
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-18 Score=122.60 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=59.2
Q ss_pred CCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 203 PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 203 ~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
..++.|+.|+..|+..|+..|..++||+..++++||..+||+++||++||||||+|+|+.....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 3467899999999999999999999999999999999999999999999999999999866543
No 66
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.70 E-value=4.4e-18 Score=134.51 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=97.3
Q ss_pred ccccCCCCccc-ccchhhhcccccccccCC---Ccccc-CCccccCCcccccccCCCCCCCCCccCCCeecc-ceeeeec
Q psy4325 16 LAVQRGNGLTV-GICASKLHDLLHEAHAGS---SSSFS-SSFNDVDYEGIMPVYMPIASIPKCGGCGDLILD-RFILKVL 89 (306)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~-~~~~~~~ 89 (306)
+.+..|+.+|. +....++++.||+++|.| ..+|. +.|...++.+||..+|...+.++|.+|+++|.+ +.++.++
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~ 83 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYN 83 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEET
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEECC
Confidence 45788998888 456779999999999954 55775 468899999999999998889999999999996 3456799
Q ss_pred Ccccc--ccCcccCcCCCCCCCcce-eeCCeecccccccccc
Q psy4325 90 ERTWH--ARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRF 128 (306)
Q Consensus 90 ~~~~H--~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~ 128 (306)
++.|| +.||+|..|+++|.+..| ..+|++||..+|.++|
T Consensus 84 ~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 84 NFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 99999 999999999999988766 8899999998877665
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.69 E-value=4.9e-18 Score=116.35 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=50.2
Q ss_pred cchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 211 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
-+..|+.+|+..|..++||+..++++||..+||+++||++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 46799999999999999999999999999999999999999999999999743
No 68
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.2e-17 Score=125.34 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=61.4
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhC---------------CCccchhcccccchhHHHHhhhh
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG---------------LDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~---------------l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
....++.|+.|+..|+.+||..|+.++||+..+|+.||..++ |++.+|++||||||+|+|++...
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999999 99999999999999999998775
Q ss_pred c
Q psy4325 266 A 266 (306)
Q Consensus 266 ~ 266 (306)
.
T Consensus 84 ~ 84 (95)
T 2cuf_A 84 A 84 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 69
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=3.8e-18 Score=118.62 Aligned_cols=58 Identities=22% Similarity=0.485 Sum_probs=55.5
Q ss_pred CCCCCcccchHhHHHHHhcc---ccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 204 NKRPRTTITAKQLETLKMAY---NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F---~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
.++.|+.|+..|+..|+.+| ..++||+..+++.||..+||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 99999999999999999999999999999999999876
No 70
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=121.14 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=59.0
Q ss_pred CCCCCCCcccchHhHHHHHhcccc---CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNT---SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
...++.|+.|+..|+..|+.+|.. ++||+..+|+.||..+||++.||++||||||+|+|+.....
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 456788999999999999999876 69999999999999999999999999999999999865544
No 71
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=3.4e-18 Score=121.33 Aligned_cols=59 Identities=20% Similarity=0.382 Sum_probs=54.6
Q ss_pred CCCCcccchHhHHHHHhcc-ccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 205 KRPRTTITAKQLETLKMAY-NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F-~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
.+.+++++..|+.+||..| ..++||+..+|++||..+||+++||+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4567778889999999999 9999999999999999999999999999999999999743
No 72
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=119.12 Aligned_cols=73 Identities=21% Similarity=0.392 Sum_probs=64.6
Q ss_pred CCeeccccccccccCcCCCCCCCCCCC---CCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHH
Q psy4325 115 NGLLFCKEDFFKRFGTKCAGCEMGIPP---TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEA 189 (306)
Q Consensus 115 ~g~~yC~~cy~~~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~ 189 (306)
++++||+.||.++++++|.+|+++|.+ ...++.+.++.||++||+|..|+++|. +..|+. .++.+||..||.+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~-~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA-NKRFVF-HQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT-TSCCCE-ETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC-CCccEe-ECCEEEChHHhcc
Confidence 478999999999999999999999986 446778999999999999999999996 455654 7899999999965
No 73
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-17 Score=122.40 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
.+..+|..|+.+|+..|..++||+..+|+.||..+||++++|+|||||||+|+|++.+..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 345599999999999999999999999999999999999999999999999999876544
No 74
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=4.7e-18 Score=125.56 Aligned_cols=62 Identities=24% Similarity=0.484 Sum_probs=57.7
Q ss_pred CCCCcccchHhHHHHHhcc---ccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 205 KRPRTTITAKQLETLKMAY---NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F---~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
++.|+.|+..|+.+|+.+| ..++||+..+++.||..+||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5789999999999999999 9999999999999999999999999999999999999876543
No 75
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=7.3e-18 Score=115.61 Aligned_cols=55 Identities=25% Similarity=0.386 Sum_probs=53.1
Q ss_pred CcccchHhHHHHHhcccc---CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 208 RTTITAKQLETLKMAYNT---SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 208 rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
+++|+..|+.+|+..|.. ++||+..+++.||..+||++.||++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 689999999999999999 9999999999999999999999999999999999974
No 76
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.1e-17 Score=118.46 Aligned_cols=76 Identities=20% Similarity=0.395 Sum_probs=67.9
Q ss_pred CCeeccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 115 NGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 115 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
+|++||+.||.++++++|..|+++|.+. +|.+.++.||++||+|..|+++|. +..|+. .++.+||..||.+++++.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~f~~~ 76 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHRECLVCTGCQTPLA-GQQFTS-RDEDPYCVACFGELFASG 76 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC--CEESSSSEECTTTCBCSSSCCBCT-TCCEEE-CSSSEEEHHHHHHHTTCS
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc--EEEECCchhhhhhCCcccCCCcCC-CCeeEe-ECCEEECHHHHHHHcCCC
Confidence 5899999999999999999999999764 568999999999999999999995 556655 799999999999998873
No 77
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.68 E-value=7.7e-18 Score=126.58 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=56.1
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
...++.|++|+..|+.+|+..|..++||+..+++.||..+||+++||++||||||+|+|+..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 44568899999999999999999999999999999999999999999999999999999854
No 78
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=3.3e-17 Score=119.29 Aligned_cols=78 Identities=27% Similarity=0.554 Sum_probs=70.1
Q ss_pred cCCcccccccCCCCCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCccee-e-CCeeccccccccccCcCC
Q psy4325 55 VDYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFA-R-NGLLFCKEDFFKRFGTKC 132 (306)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~-~-~g~~yC~~cy~~~~~~~C 132 (306)
+++.+||..+|. ...++|++|+++|.+. ++.++++.||+.||+|..|+++|.+..|. . +|++||+.||.++|+++|
T Consensus 1 ~~g~~yC~~~y~-~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C 78 (81)
T 2dlo_A 1 GSSGSSGEGCYV-ATLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78 (81)
T ss_dssp CCCCCCCCCCCC-SSCCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSS
T ss_pred CcCCEECHHHhh-cCCCccccCCCeecce-eEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcC
Confidence 367899999998 6889999999999976 66899999999999999999999987774 4 689999999999999999
Q ss_pred CC
Q psy4325 133 AG 134 (306)
Q Consensus 133 ~~ 134 (306)
.+
T Consensus 79 ~~ 80 (81)
T 2dlo_A 79 SS 80 (81)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 79
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.6e-17 Score=118.19 Aligned_cols=78 Identities=23% Similarity=0.500 Sum_probs=70.6
Q ss_pred CCcccccccCCCCCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCC
Q psy4325 56 DYEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 56 ~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
++.+||..+|...+.++|.+|+++|.++ .+.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|++
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 3678999999988899999999999986 4579999999999999999999987555 8999999999999999999964
No 80
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=6.6e-17 Score=117.37 Aligned_cols=75 Identities=28% Similarity=0.578 Sum_probs=67.0
Q ss_pred CCeeccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 115 NGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 115 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
+|++||+.||.++++++|.+|+++|.+ .++.+.++.||++||+|..|+++|..+ .|+. .++.+||..||.+++++
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~~~~yC~~~y~~~f~~ 75 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLE--NYLSAMDTVWHPECFVCGDCFTSFSTG-SFFE-LDGRPFCELHYHHRRGS 75 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCS--SCEEETTEEECTTTCBCSSSCCBSCSS-CCEE-SSSCEECHHHHHHHHSS
T ss_pred CCCccchhHHhhhcCCccccCCCeecc--eeEEECCCeEecCcCChhhCCCCCCCC-cEEe-ECCEEECHHHHHHHcCC
Confidence 478999999999999999999999986 346899999999999999999999654 4555 69999999999999886
No 81
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.6e-17 Score=120.94 Aligned_cols=65 Identities=28% Similarity=0.348 Sum_probs=60.1
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhh---------------------CCCccchhcccccchhHHH
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDT---------------------GLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~---------------------~l~~~~V~~WFqNrR~k~k 260 (306)
...++.|+.|+..|+.+|+..|+.++||+..+|++||..+ .|++.+|++||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3467889999999999999999999999999999999999 7999999999999999999
Q ss_pred Hhhhhc
Q psy4325 261 RLKKDA 266 (306)
Q Consensus 261 ~~~~~~ 266 (306)
+..+..
T Consensus 84 r~~~~~ 89 (102)
T 2da6_A 84 FRQKLA 89 (102)
T ss_dssp HHHHHH
T ss_pred HhhHhh
Confidence 876654
No 82
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=9.3e-18 Score=117.66 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=53.3
Q ss_pred CcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 208 rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
-..++..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+|+...
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 456889999999999999999999999999999999999999999999999998654
No 83
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.9e-17 Score=117.61 Aligned_cols=77 Identities=26% Similarity=0.654 Sum_probs=69.9
Q ss_pred CcccccccCCCCCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccCcCCCC
Q psy4325 57 YEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 57 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
+.+||..+|...+.++|++|+++|.+.. +.++++.||+.||+|..|+++|.+. ++.+++++||+.||.++|+++|.+
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVLENY-LSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSC-EEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccchhHHhhhcCCccccCCCeeccee-EEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 5789999999888999999999999865 5799999999999999999999774 558999999999999999999964
No 84
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=7.5e-17 Score=117.41 Aligned_cols=75 Identities=28% Similarity=0.481 Sum_probs=66.0
Q ss_pred CCeeccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 115 NGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 115 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
+|++||+.||. .++++|..|+++|.+ .++.+.++.||++||+|..|+++|. +..|+...++++||..||.+++++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC~~cy~~~f~~ 76 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILD--RILRAMGKAYHPGCFTCVVCHRGLD-GIPFTVDATSQIHCIEDFHRKFAS 76 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCS--CCEEETTEEECTTTCBCSSSCCBCT-TSCEECCTTCCCEEHHHHHHHTTS
T ss_pred cCCEECHHHhh-cCCCccccCCCeecc--eeEEECCccccHHhcCcccCCCccC-CCeeEECCCCEEECHHHHHHHhcC
Confidence 68999999998 799999999999974 4678999999999999999999996 555654347899999999999886
No 85
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.1e-17 Score=114.80 Aligned_cols=51 Identities=31% Similarity=0.505 Sum_probs=47.0
Q ss_pred chHhHHHHHhcc-ccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 212 TAKQLETLKMAY-NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 212 s~~q~~~Le~~F-~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
...|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 346899999999 679999999999999999999999999999999998863
No 86
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.65 E-value=2.7e-17 Score=136.61 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=104.7
Q ss_pred cccccCCCCcccccc-hhhhcccccccccC---CCccccCCccccCCcccccccCCCCCCCCCccCCCeeccce-eeeec
Q psy4325 15 GLAVQRGNGLTVGIC-ASKLHDLLHEAHAG---SSSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRF-ILKVL 89 (306)
Q Consensus 15 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~~~~~ 89 (306)
...+..|+.+|.+.. ..++++.||++||. |..+|....+..++.+||..+|...+.++|.+|+++|.+.+ ++.++
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~ 85 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQ 85 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEET
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEEcC
Confidence 355888999988763 56899999999995 55588766668899999999998888899999999998754 45789
Q ss_pred CccccccCcccCcCCCCCC-Ccc-e-eeCCeeccccccccccCcCCC--CCCCCCCCCCceecccCccccCCCc
Q psy4325 90 ERTWHARCLKCHECGAPLA-EKC-F-ARNGLLFCKEDFFKRFGTKCA--GCEMGIPPTQVVRRAQDLVYHLNCF 158 (306)
Q Consensus 90 ~~~~H~~Cf~C~~C~~~l~-~~~-f-~~~g~~yC~~cy~~~~~~~C~--~C~~~I~~~~~~~~~~~~~~H~~CF 158 (306)
++.||+.||+|..|+++|. +.. | ..+|++||..||.+.+...+. ....+. ..+.+.....|...|
T Consensus 86 ~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rpr----t~~~~~q~~~l~~~f 155 (169)
T 2rgt_A 86 DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGG----TPMVAASPERHDGGL 155 (169)
T ss_dssp TEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC--------------EEEECCCCEECCSSC
T ss_pred CceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCCC----CcccHHHHHHHHHHH
Confidence 9999999999999999996 444 4 458999999999888765443 222222 123444445565555
No 87
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.2e-16 Score=114.88 Aligned_cols=70 Identities=29% Similarity=0.592 Sum_probs=62.6
Q ss_pred CCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccc-cccccccCcCCCCCCCCCC
Q psy4325 71 PKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCK-EDFFKRFGTKCAGCEMGIP 140 (306)
Q Consensus 71 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~-~cy~~~~~~~C~~C~~~I~ 140 (306)
++|.+|+++|...+.+.++|+.||+.||+|..|+++|.+. ++.++|++||. .||.++|+++|.+|+..+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 4799999999965567899999999999999999999875 44999999999 7999999999999997664
No 88
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=3.6e-17 Score=119.56 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=53.9
Q ss_pred CCCcccchHhHHHHHhcccc---CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 206 RPRTTITAKQLETLKMAYNT---SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
+.+++|+..|+..|+.+|.. ++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 45667999999999999999 99999999999999999999999999999999999854
No 89
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=5.7e-17 Score=119.62 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=55.1
Q ss_pred CCCCCCcccchHhHHHHHhcccc---CCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 203 PNKRPRTTITAKQLETLKMAYNT---SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 203 ~~kr~rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
.+++.|+.|+..|+.+|+.+|.. ++||+..+++.||..+||++.||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667999999999999999999 99999999999999999999999999999999987
No 90
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.7e-16 Score=115.23 Aligned_cols=66 Identities=27% Similarity=0.776 Sum_probs=60.7
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcceeeCCeeccccccccccCcCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
..++|.+|+++|.+.+++.++++.||+.||+|..|+++|.+.+|.+++++||+.||.++|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHHcCCCCCC
Confidence 467999999999976677899999999999999999999887779999999999999999999974
No 91
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3e-17 Score=113.66 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=49.8
Q ss_pred CcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 208 rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
+...+..|+..||..|..++||+..+|+.||..+||++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 344568999999999999999999999999999999999999999999998765
No 92
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.64 E-value=2.7e-17 Score=135.41 Aligned_cols=64 Identities=34% Similarity=0.555 Sum_probs=52.7
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
.+.++.|+.|+..|+.+|+..|..++||+..+|..||..+||+++||+|||||||+|+||+.+.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 4567889999999999999999999999999999999999999999999999999999997654
No 93
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=3.3e-16 Score=112.52 Aligned_cols=69 Identities=20% Similarity=0.449 Sum_probs=61.8
Q ss_pred CCCCCCccCCCeecc---ceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCCCC
Q psy4325 68 ASIPKCGGCGDLILD---RFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAGCE 136 (306)
Q Consensus 68 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~C~ 136 (306)
...++|.+|+++|.+ ..++.++++.||++||+|..|+++|.+..| .+++++||+.||.++|+++|..++
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 356799999999995 456689999999999999999999987655 899999999999999999999875
No 94
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=3.3e-17 Score=123.16 Aligned_cols=65 Identities=28% Similarity=0.408 Sum_probs=53.7
Q ss_pred CCCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHh------------------hC---CCccchhcccccchhH
Q psy4325 200 GDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQD------------------TG---LDMRVVQVWFQNRRAK 258 (306)
Q Consensus 200 ~~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~------------------~~---l~~~~V~~WFqNrR~k 258 (306)
...+.++.|+.|+..|+..||..|+.++||+..+|++||.. || |++.+|++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34556789999999999999999999999999999999999 88 9999999999999999
Q ss_pred HHHhhh
Q psy4325 259 EKRLKK 264 (306)
Q Consensus 259 ~k~~~~ 264 (306)
+|+..+
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 876554
No 95
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=3.7e-17 Score=132.13 Aligned_cols=61 Identities=31% Similarity=0.602 Sum_probs=55.6
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
.+.++.|+.|+..|+.+|+..|..++||+..+|..||..+||+++||+|||||||+|+||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999974
No 96
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.63 E-value=4.6e-17 Score=133.73 Aligned_cols=61 Identities=28% Similarity=0.544 Sum_probs=54.9
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
.+.++.|+.|+..|+.+|+..|..++||+..+|+.||..+||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999985
No 97
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.6e-16 Score=113.97 Aligned_cols=77 Identities=19% Similarity=0.455 Sum_probs=68.8
Q ss_pred CcccccccCCCCCCCCCccCCCeeccc-eeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCC
Q psy4325 57 YEGIMPVYMPIASIPKCGGCGDLILDR-FILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 57 ~~~~~~~~~~~~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~ 133 (306)
+.+||..+|.....++|.+|+++|... .++.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 468999999988899999999999843 34679999999999999999999987655 899999999999999999875
No 98
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.61 E-value=1.5e-16 Score=133.62 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=93.4
Q ss_pred ccccCCCCcccccc-hhhhcccccccccCC---CccccCCccccCCcccccccCCCCCCCCCccCCCeeccce-eeeecC
Q psy4325 16 LAVQRGNGLTVGIC-ASKLHDLLHEAHAGS---SSSFSSSFNDVDYEGIMPVYMPIASIPKCGGCGDLILDRF-ILKVLE 90 (306)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~~~~~~ 90 (306)
+.+..|+.+|.+.. ..++++.||++||.| ..+|....+..++.+||..+|...+.++|.+|+++|.+.. ++.+.+
T Consensus 61 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~ 140 (182)
T 2jtn_A 61 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQD 140 (182)
T ss_dssp CBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETT
T ss_pred CcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEEecCC
Confidence 45778888888763 568999999999954 5588666568899999999999889999999999998753 457899
Q ss_pred ccccccCcccCcCCCCCC-Ccc-e-eeCCeeccccccccc
Q psy4325 91 RTWHARCLKCHECGAPLA-EKC-F-ARNGLLFCKEDFFKR 127 (306)
Q Consensus 91 ~~~H~~Cf~C~~C~~~l~-~~~-f-~~~g~~yC~~cy~~~ 127 (306)
+.||+.||+|..|+++|. +.. | ..+|++||..||.+.
T Consensus 141 ~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 141 FVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp EECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred CCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 999999999999999996 444 4 458999999999653
No 99
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.61 E-value=2.8e-16 Score=128.30 Aligned_cols=61 Identities=39% Similarity=0.619 Sum_probs=57.5
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
.+.++.|+.|+..|+..|+..|..++||+..+|..||..+||+++||+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567889999999999999999999999999999999999999999999999999999984
No 100
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.61 E-value=1.8e-16 Score=129.02 Aligned_cols=60 Identities=28% Similarity=0.574 Sum_probs=57.2
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
.++++.|+.|+..|+.+|+..|..++||+..+|..||..+||+++||+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 456778999999999999999999999999999999999999999999999999999986
No 101
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=7.3e-16 Score=114.44 Aligned_cols=69 Identities=26% Similarity=0.574 Sum_probs=60.6
Q ss_pred CCCCCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCC
Q psy4325 65 MPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 65 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
+.....++|.+|+++|.+.. +.++|+.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.+
T Consensus 20 ~~~~~~~~C~~C~~~I~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 20 PAGKRTPMCAHCNQVIRGPF-LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CTTTCCCBBSSSCCBCCSCE-EEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCccCCCEecceE-EEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 34457789999999998765 469999999999999999999987655 8899999999999999999964
No 102
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.60 E-value=2.2e-16 Score=114.94 Aligned_cols=71 Identities=25% Similarity=0.548 Sum_probs=54.4
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccCcCCCCCCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFGTKCAGCEMGI 139 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~~~C~~C~~~I 139 (306)
..++|..|+++|.+.+++.++++.||+.||+|..|+++|.+. ++.+++++||+.||.++|+++|.+|++..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 457999999999866677899999999999999999999876 45899999999999999999999998654
No 103
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=6.6e-16 Score=112.36 Aligned_cols=76 Identities=22% Similarity=0.471 Sum_probs=64.3
Q ss_pred CeeccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 116 GLLFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 116 g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
+.+||+.||.++|+++|..|+++|.+ .+|.+.++.||++||+|..|+++|..+..+ ...++.+||..||.+.+...
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~-~~~~~~~~C~~C~~~~~~~~ 77 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRV-TFNGKECMCQKCSLPVSVSG 77 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCCCCSSSCE-EEETTEEEEHHHHSCCSSCC
T ss_pred CCCcchHHHHhHhCCcCccccCEecc--ceEEECCceeCccCCccccCCCCCCCCCEE-EeCCCCEEChhhhcccCCCC
Confidence 46899999999999999999999984 466899999999999999999999766644 44555679999997776653
No 104
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.1e-15 Score=108.57 Aligned_cols=67 Identities=24% Similarity=0.673 Sum_probs=59.8
Q ss_pred CCCCCCccCCCeecc-ceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCC
Q psy4325 68 ASIPKCGGCGDLILD-RFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 68 ~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
...++|.+|+++|.+ +.++.++|+.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 356799999999996 367789999999999999999999987655 8999999999999999999964
No 105
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.5e-15 Score=107.81 Aligned_cols=66 Identities=23% Similarity=0.597 Sum_probs=59.5
Q ss_pred CCCCCccCCCeeccc-eeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCC
Q psy4325 69 SIPKCGGCGDLILDR-FILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
+.++|..|+++|.+. .++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 567999999999974 56789999999999999999999987655 8999999999999999999964
No 106
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.4e-15 Score=109.30 Aligned_cols=66 Identities=26% Similarity=0.566 Sum_probs=59.0
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccc-cccccccCcCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCK-EDFFKRFGTKCAG 134 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~-~cy~~~~~~~C~~ 134 (306)
..++|.+|+++|.+.+.+.++++.||+.||+|..|+++|.+. ++.+++++||. .||.++|+++|.+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 457999999999965667899999999999999999999876 55999999999 7999999999964
No 107
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.4e-15 Score=107.39 Aligned_cols=65 Identities=23% Similarity=0.560 Sum_probs=58.6
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
+.++|..|+++|.++. +.++++.||+.||+|..|+++|.+..| .+++++||..||.++|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGG-VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCBCSSSCCBCCSSE-EESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCcccCCeeccce-EEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 5679999999999875 579999999999999999999987655 8899999999999999999964
No 108
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=6.3e-16 Score=108.10 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=50.2
Q ss_pred cccchHhHHHHHhccc---cCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhh
Q psy4325 209 TTITAKQLETLKMAYN---TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~---~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~ 264 (306)
..|+..|+..|+.+|. .++||+..+++.||..+||++.||++||||||+|+|+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 4789999999999999 9999999999999999999999999999999999997543
No 109
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.7e-15 Score=110.16 Aligned_cols=77 Identities=17% Similarity=0.322 Sum_probs=67.7
Q ss_pred CcccccccCCCCCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCC-Ccce--eeCCeeccccccccccCcCCC
Q psy4325 57 YEGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA-EKCF--ARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 57 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f--~~~g~~yC~~cy~~~~~~~C~ 133 (306)
+.+||..+|...+.++|++|+++|.+. ++.++++.||+.||+|..|+++|. +..| ..++++||+.||.++|++.|.
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCCSC-CBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCccchhHHhhhcCCcCccCCCCcCce-EEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 467999999988999999999999965 457999999999999999999996 4666 378999999999999998875
Q ss_pred C
Q psy4325 134 G 134 (306)
Q Consensus 134 ~ 134 (306)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=107.71 Aligned_cols=70 Identities=24% Similarity=0.508 Sum_probs=63.0
Q ss_pred CcccccccCCCCCCCCCccCCCeecc----ceeeeecCccccccCcccCcCCCCCCCcce-eeCCeecccccccc
Q psy4325 57 YEGIMPVYMPIASIPKCGGCGDLILD----RFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFK 126 (306)
Q Consensus 57 ~~~~~~~~~~~~~~~~C~~C~~~I~~----~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~ 126 (306)
+.+||..+|.....++|++|+++|.+ ..++.++++.||+.||+|..|+++|.+..| .++|++||+.||.+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 56899999998899999999999994 466789999999999999999999987655 99999999999964
No 111
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.5e-15 Score=106.89 Aligned_cols=65 Identities=23% Similarity=0.535 Sum_probs=58.6
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCAG 134 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~~ 134 (306)
..++|.+|+++|.++. +.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAITSGG-ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCCTTC-EEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeCcce-EEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 4679999999999864 579999999999999999999987655 8999999999999999999964
No 112
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=4.3e-16 Score=128.60 Aligned_cols=66 Identities=24% Similarity=0.417 Sum_probs=54.9
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
....++.|+.|+..|+..|+..|..++||+..+|+.||..+||++.||+|||||||+|+|+.....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 345678999999999999999999999999999999999999999999999999999998865433
No 113
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.4e-15 Score=108.07 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=58.4
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcceeeCCeeccccccccccCcCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~ 133 (306)
..++|.+|+++|.+.. +.++|+.||+.||+|..|+++|.+..|.++|++||..||.++|+|++.
T Consensus 14 ~~~~C~~C~~~I~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIIDEQP-LIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCBCTTTCCBCCSCC-CCCSSSCCCTTTSBCSSSCCBCCTTCEEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCCccCCCEecceE-EEECcceeCCCCCEeCCCCCccCCCCEeECCEEeCHHHHHHhCCCCCC
Confidence 5679999999999655 579999999999999999999998888999999999999999998765
No 114
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.2e-15 Score=106.17 Aligned_cols=64 Identities=23% Similarity=0.567 Sum_probs=57.6
Q ss_pred CCCCCccCCCeecc---ceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCC
Q psy4325 69 SIPKCGGCGDLILD---RFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKC 132 (306)
Q Consensus 69 ~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C 132 (306)
+.++|.+|+++|.+ +.++.++++.||+.||+|..|+++|.+..| .++|++||..||.++|+|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 46799999999995 466789999999999999999999988766 79999999999999999876
No 115
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=4e-15 Score=107.05 Aligned_cols=65 Identities=20% Similarity=0.463 Sum_probs=56.7
Q ss_pred CCCCCccCCCeecc-ceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccCcCCC
Q psy4325 69 SIPKCGGCGDLILD-RFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 69 ~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~~~C~ 133 (306)
..++|.+|+++|.. +.++.++|+.||+.||+|..|+++|.+. ++.++|++||+.||.++|+++|.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 56799999999984 5566799999999999999999999774 45999999999999999999985
No 116
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.52 E-value=4.1e-15 Score=103.74 Aligned_cols=62 Identities=27% Similarity=0.817 Sum_probs=55.4
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccCcC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFGTK 131 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~~~ 131 (306)
..++|++|+++|.+. ++.++|+.||+.||+|..|+++|.+. ++.++|++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEecce-EEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 567999999999965 56799999999999999999999875 559999999999999999875
No 117
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=6.8e-15 Score=109.39 Aligned_cols=67 Identities=21% Similarity=0.429 Sum_probs=60.3
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccCcCCCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFGTKCAGC 135 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~~~C~~C 135 (306)
..++|..|+++|.+.+++.++++.||+.||+|..|+++|.+. ++.+++++||+.||.++|+++|..+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~ 81 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCcc
Confidence 467999999999986677899999999999999999999875 5589999999999999999999743
No 118
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.51 E-value=7.9e-15 Score=106.92 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=53.3
Q ss_pred CcccchHhHHHHHhcccc---CCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhhc
Q psy4325 208 RTTITAKQLETLKMAYNT---SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 208 rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~~ 266 (306)
...|+.+++..|+.+|.. ++||+.++|++||.++||++.||++||||+|+|+++.....
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 356889999999999976 89999999999999999999999999999999999765443
No 119
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.49 E-value=2.2e-14 Score=112.67 Aligned_cols=70 Identities=31% Similarity=0.777 Sum_probs=62.6
Q ss_pred cccccCc--CCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 124 FFKRFGT--KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 124 y~~~~~~--~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
|.++|++ +|..|+++|...+.++.+.++.||++||+|..|++.|..+..|+. .++.+||..||.+++++.
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~~~~~ 72 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLL-INSDIVCEQDIYEWTKIN 72 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHHHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEe-eCCEEEcHHHhHHHhccc
Confidence 5678998 999999999887778899999999999999999999977777766 689999999999998774
No 120
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=2e-14 Score=106.37 Aligned_cols=64 Identities=25% Similarity=0.595 Sum_probs=57.7
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCC-cceeeCCeeccccccccccCcCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE-KCFARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~f~~~g~~yC~~cy~~~~~~~C~ 133 (306)
..++|..|++.|.+.. +.++++.||+.||+|..|+++|.+ .+|.+++++||+.||.++|++++.
T Consensus 24 ~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAV-VKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCCSCC-EESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEecccE-EEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5679999999999854 579999999999999999999987 466899999999999999999875
No 121
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=2.1e-14 Score=101.32 Aligned_cols=64 Identities=25% Similarity=0.693 Sum_probs=56.6
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcce-eeCCeeccccccccccCcCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~~~C~ 133 (306)
+.++|..|+++|.+. ++.++++.||++||+|..|+++|.+..| .+++++||+.||.++++++..
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CSSBCSSSCCBCCSC-CEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCcCccCCCEecce-EEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 457899999999975 4579999999999999999999987655 789999999999999987753
No 122
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.1e-14 Score=105.43 Aligned_cols=64 Identities=27% Similarity=0.669 Sum_probs=57.5
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccCcCCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFGTKCA 133 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~~~C~ 133 (306)
..++|.+|+++|.+. ++.++++.||+.||+|..|+++|.+. +|.+++++||+.||.++|++++.
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 467999999999986 55799999999999999999999764 56899999999999999999864
No 123
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=4e-14 Score=100.74 Aligned_cols=62 Identities=19% Similarity=0.407 Sum_probs=54.0
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCC-Ccce-eeCCeeccccccccccCcC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA-EKCF-ARNGLLFCKEDFFKRFGTK 131 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f-~~~g~~yC~~cy~~~~~~~ 131 (306)
+.++|++|+++|.+. ++.++++.||++||+|..|+++|. +..| ..++++||..||.+.++..
T Consensus 4 ~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 4 GSSGCDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp SCCSCSSSCCCCSSC-CBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCCcccCCCEecCe-eEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 567999999999985 457999999999999999999997 5544 8899999999998877643
No 124
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=2.8e-14 Score=101.20 Aligned_cols=66 Identities=23% Similarity=0.592 Sum_probs=56.6
Q ss_pred CCCCCccCCCeecc-ceeeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccCcCCCCC
Q psy4325 69 SIPKCGGCGDLILD-RFILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFGTKCAGC 135 (306)
Q Consensus 69 ~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~~~C~~C 135 (306)
+.++|.+|+++|.+ +.++.++++.||+.||+|..|+++|.+. ++.+++++||+.||.++| .+|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 56799999999986 4567899999999999999999999876 448999999999999887 456544
No 125
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=7.8e-14 Score=99.25 Aligned_cols=65 Identities=28% Similarity=0.509 Sum_probs=56.8
Q ss_pred cccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
.+|+++|.+|+++|.+ .++.+.++.||++||+|..|+++|..+..|+. .++.+||..||.+++++
T Consensus 2 s~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 2 SSGSSGCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAARTE 66 (73)
T ss_dssp CCSCCSCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHTSSS
T ss_pred CcCcCCcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHhhcc
Confidence 3578999999999987 35689999999999999999999976777765 68999999999988776
No 126
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.46 E-value=6.2e-14 Score=109.99 Aligned_cols=62 Identities=40% Similarity=1.072 Sum_probs=55.6
Q ss_pred CCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCC--C-cceeeCCeeccccccccccC
Q psy4325 68 ASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLA--E-KCFARNGLLFCKEDFFKRFG 129 (306)
Q Consensus 68 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~-~~f~~~g~~yC~~cy~~~~~ 129 (306)
...++|++|+++|.+.+++.++++.||+.||+|..|+++|. + .+|.++|++||+.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 35679999999999988778999999999999999999996 3 56699999999999998875
No 127
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2e-14 Score=98.84 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=44.0
Q ss_pred hHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhH
Q psy4325 213 AKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258 (306)
Q Consensus 213 ~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k 258 (306)
.+|+..|+..|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999974
No 128
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=8.6e-14 Score=101.33 Aligned_cols=64 Identities=22% Similarity=0.452 Sum_probs=55.8
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCccee---eCCeeccccccccccCcCC
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFA---RNGLLFCKEDFFKRFGTKC 132 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~---~~g~~yC~~cy~~~~~~~C 132 (306)
..++|.+|+++|++.+++.++++.||..||+|..|+++|....|. ++|++||+.||.++++.-+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 457999999999877667799999999999999999999886653 6899999999999887644
No 129
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.43 E-value=1e-13 Score=108.79 Aligned_cols=72 Identities=18% Similarity=0.468 Sum_probs=63.1
Q ss_pred CCccCCCeecc-ceeeeecCccccccCcccCcCCCCC-CCc-ceeeCCeeccccccccccCcCCCCCCCCCCCCC
Q psy4325 72 KCGGCGDLILD-RFILKVLERTWHARCLKCHECGAPL-AEK-CFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQ 143 (306)
Q Consensus 72 ~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~-~f~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~ 143 (306)
+|..|++.|.. +.++.++++.||..||+|..|+++| .+. ++..++++||..||.++++++|..++..+...+
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGD 84 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCSC
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccCC
Confidence 89999999996 3456799999999999999999999 455 558899999999999999999999988876544
No 130
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=8.2e-14 Score=98.74 Aligned_cols=66 Identities=26% Similarity=0.522 Sum_probs=58.4
Q ss_pred cccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
++++++|..|+++|...+.++.+.++.||++||+|..|+++|..+ .|+. .++.+||..||.+++++
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~~~~yC~~cy~~~f~~ 67 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK-SFIP-KDNQNFCVPCYEKQHAS 67 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSS-SEEE-ETTEEEEHHHHHHHTSS
T ss_pred CccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCC-ccCc-cCCeEECHHHHhHHhCC
Confidence 467899999999998877778999999999999999999999654 5554 78999999999999887
No 131
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.43 E-value=7.7e-14 Score=105.59 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=77.1
Q ss_pred cccccCCCCccc--ccchhhhcccccccccCC---Ccccc-CCccccCCcccccccCCCCCCCCCccCCCeecc-ceeee
Q psy4325 15 GLAVQRGNGLTV--GICASKLHDLLHEAHAGS---SSSFS-SSFNDVDYEGIMPVYMPIASIPKCGGCGDLILD-RFILK 87 (306)
Q Consensus 15 g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~-~~~~~ 87 (306)
+..+..|+.+|. +....++++.||+++|.| ..+|. ..|+..++.+||..++.....++|.+|+++|.. +.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 84 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVE 84 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEE
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEEE
Confidence 455788999886 566779999999999954 55775 558899999999999999999999999999983 34668
Q ss_pred ecCccccccCcccCcCC
Q psy4325 88 VLERTWHARCLKCHECG 104 (306)
Q Consensus 88 ~~~~~~H~~Cf~C~~C~ 104 (306)
++|+.||+.||+|..|+
T Consensus 85 a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 85 YKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp SSSCEEETTTCCCTTCC
T ss_pred eCCcchHHhCCCCCCCC
Confidence 99999999999999996
No 132
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.42 E-value=8e-14 Score=98.65 Aligned_cols=67 Identities=27% Similarity=0.641 Sum_probs=58.3
Q ss_pred cccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhh
Q psy4325 124 FFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192 (306)
Q Consensus 124 y~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~ 192 (306)
|...++++|..|+++|.+.+.++.+.++.||++||+|..|+++|..+ .|+. .++++||..||.++|+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYE-FEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEE-ETTEEECHHHHHHHTC
T ss_pred ccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEe-ECCeEeCHHHHHHhhC
Confidence 34477899999999999888888899999999999999999999765 4554 6899999999998874
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.5e-13 Score=97.32 Aligned_cols=67 Identities=22% Similarity=0.452 Sum_probs=58.3
Q ss_pred cccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
++++++|..|+++|...+.++.+.++.||++||+|..|+++|..+ .|+. .++.+||..||.+++++.
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~~~~yC~~cy~~~f~~~ 68 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR-SFVP-DKGAHYCVPCYENKFASG 68 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTS-CEEE-ETTEEEEHHHHHHHTSCC
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCC-ccCC-cCCeEECHHHHHHHccCc
Confidence 467899999999998766778999999999999999999999654 4554 699999999999998874
No 134
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=2.2e-13 Score=96.56 Aligned_cols=65 Identities=31% Similarity=0.628 Sum_probs=57.1
Q ss_pred ccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 127 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
.++++|..|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+. .++.+||..||.+++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR-GQHFYA-VERRAYCEGCYVATLES 67 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT-TSCEEE-SSSCEEEHHHHHHHHHT
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC-cCcCEe-eCCeEECHHHHHHHHcc
Confidence 467899999999987666778999999999999999999994 566665 68999999999999876
No 135
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.40 E-value=1.6e-13 Score=97.05 Aligned_cols=62 Identities=21% Similarity=0.507 Sum_probs=53.8
Q ss_pred CCCCCCccCCCeeccce-eeeecCccccccCcccCcCCCCCCCc-ceeeCCeeccccccccccC
Q psy4325 68 ASIPKCGGCGDLILDRF-ILKVLERTWHARCLKCHECGAPLAEK-CFARNGLLFCKEDFFKRFG 129 (306)
Q Consensus 68 ~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~g~~yC~~cy~~~~~ 129 (306)
...++|.+|+++|...+ ++.+.|+.||+.||+|..|+++|.+. ++.++|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 45679999999999643 55799999999999999999999765 5599999999999988774
No 136
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=2.1e-13 Score=96.63 Aligned_cols=65 Identities=23% Similarity=0.457 Sum_probs=55.9
Q ss_pred ccCcCCCCCCCCCCC--CCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 127 RFGTKCAGCEMGIPP--TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 127 ~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
.++++|..|+++|.+ .+.++.+.++.||++||+|..|+++|. +..|+. .++++||..||.+++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV-GRGFLT-ERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT-TSCCEE-CSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC-CCccEe-ECCEEEChhHcCcccCC
Confidence 467899999999986 456678999999999999999999995 555654 79999999999988876
No 137
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=2e-13 Score=97.89 Aligned_cols=66 Identities=21% Similarity=0.451 Sum_probs=57.2
Q ss_pred cccCcCCCCCCCCCCC--CCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 126 KRFGTKCAGCEMGIPP--TQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
++|+++|..|+++|.+ ...++.+.++.||++||+|..|+++|. +..|+. .++++||..||.+++++
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~cy~~~f~~ 69 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV-GKGFLT-QNKEIFCQKCGSGMDTD 69 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS-SSCEEE-ETTEEEETTTTCCCCCC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC-CCceEe-ECCEEECHHHhhhhhCC
Confidence 4688999999999986 445678999999999999999999996 555665 79999999999888876
No 138
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=4.4e-13 Score=97.26 Aligned_cols=71 Identities=20% Similarity=0.396 Sum_probs=60.4
Q ss_pred cccccccCCCCCCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCC-cceeeCC-eeccccccccccC
Q psy4325 58 EGIMPVYMPIASIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAE-KCFARNG-LLFCKEDFFKRFG 129 (306)
Q Consensus 58 ~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~f~~~g-~~yC~~cy~~~~~ 129 (306)
..||..+|...+.++|++|+++|.+. ++.++++.||+.||+|..|+++|.. ..|..++ .+||..||.+.+.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCSC-CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCcchHHHHhHhCCcCccccCEeccc-eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 57899999988999999999999965 5679999999999999999999974 5665555 5799999976553
No 139
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.37 E-value=2e-13 Score=95.05 Aligned_cols=64 Identities=20% Similarity=0.399 Sum_probs=54.9
Q ss_pred cccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
++++++|.+|+++|.+ .++.+.++.||++||+|..|+++|. +..|+. .++.+||..||.+++++
T Consensus 2 ~~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 2 SMGVPICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEKPFL-GHRHYE-RKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCCCEETTTTEECCS--CEECCTTSBEETTTCBCTTTCCBCS-SSCCEE-ETTEEECHHHHHHHCSC
T ss_pred CcCCCCCcccCCEecc--eEEEECccccccCcCEECCCCCCCC-CCceEe-ECCcEECHHHHHHHhCC
Confidence 4678999999999983 3568999999999999999999996 455654 79999999999998875
No 140
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=94.45 Aligned_cols=58 Identities=26% Similarity=0.533 Sum_probs=50.2
Q ss_pred CCCCccCCCeecc-ceeeeecCcccc--ccCcccCcCCCCCCCcce-eeCCeecc-ccccccc
Q psy4325 70 IPKCGGCGDLILD-RFILKVLERTWH--ARCLKCHECGAPLAEKCF-ARNGLLFC-KEDFFKR 127 (306)
Q Consensus 70 ~~~C~~C~~~I~~-~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~f-~~~g~~yC-~~cy~~~ 127 (306)
.++|.+|+++|.. +..+.++|+.|| +.||+|..|+++|.+..| .++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4589999999995 356689999999 999999999999988655 99999999 7898653
No 141
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=2.7e-13 Score=97.30 Aligned_cols=66 Identities=26% Similarity=0.619 Sum_probs=57.4
Q ss_pred cccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
..++++|.+|+++|...+.++.+.|+.||++||+|..|+++|..+ .|+. .++.+||..||.+++++
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~~f~~ 73 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYE-FEGRKYCEHDFQMLFAP 73 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG-CSEE-ETTEEECHHHHHHHCCC
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC-CeEe-ECCeEeCHHHHHHHhhc
Confidence 345789999999998777788999999999999999999999765 4554 79999999999998876
No 142
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.36 E-value=2.9e-14 Score=119.73 Aligned_cols=60 Identities=27% Similarity=0.412 Sum_probs=53.6
Q ss_pred CCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhC---------------------CCccchhcccccchhHHH
Q psy4325 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG---------------------LDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 202 ~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~---------------------l~~~~V~~WFqNrR~k~k 260 (306)
.+.+|.|+.|+..|+.+|++.|..++||+..+|++||..++ |++.+|++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 45678899999999999999999999999999999999999 999999999999999876
Q ss_pred H
Q psy4325 261 R 261 (306)
Q Consensus 261 ~ 261 (306)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 143
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=9.3e-13 Score=97.51 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=60.8
Q ss_pred eccccccccccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhccC
Q psy4325 118 LFCKEDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDG 195 (306)
Q Consensus 118 ~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~~ 195 (306)
..+...+...++++|..|+++|.+ .++.+.++.||++||+|..|++.|.. ..|+ ..++.+||..||.++|++..
T Consensus 14 ~~~~~~~~~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~~-~~f~-~~~g~~yC~~cy~~~f~~~c 87 (90)
T 2dar_A 14 QRAEHIPAGKRTPMCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTMAY-IGFV-EEKGALYCELCYEKFFASGP 87 (90)
T ss_dssp BCCEEECTTTCCCBBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBCSS-SCBE-ESSSCEECHHHHHHHTSCCC
T ss_pred hhcccCCCCCCCCCCccCCCEecc--eEEEECCccccccCCccCCCCCCCCC-CEeE-eECCEEECHHHHHHHcCCCC
Confidence 344445667888999999999963 45689999999999999999999964 4555 47999999999999998743
No 144
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=1.5e-12 Score=96.56 Aligned_cols=75 Identities=24% Similarity=0.588 Sum_probs=61.9
Q ss_pred ccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhccCCCCCCCCCC
Q psy4325 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDGNCLDGDQPN 204 (306)
Q Consensus 127 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~ 204 (306)
...++|..|+++|.+.+.+ .+.++.||++||+|..|++.|..+. |+. .++.+||..||.+++++.+...++-.+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~~-~~~-~~g~~yC~~~y~~~f~~kc~~~~g~g~~ 87 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERL-LANQQVFHISCFRCSYCNNKLSLGT-YAS-LHGRIYCKPHFNQLFKSKGNYDEGFGSG 87 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEE-ECSSSEEETTTCBCTTTCCBCCTTT-CCC-SSSCCCCHHHHHHHSCCCSCCCSCCCCC
T ss_pred CCCCcCccCCCccCCceeE-EECCCEECCCCCeeCCCCCCCCCCC-cEe-ECCEEECHHHHHHHhCCCcCccCCcCCC
Confidence 3467999999999876665 7999999999999999999997654 554 7999999999999999877655554443
No 145
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=1.3e-12 Score=91.69 Aligned_cols=63 Identities=25% Similarity=0.554 Sum_probs=54.7
Q ss_pred ccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 127 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
.++++|..|+++|.+. .+.+.++.||++||+|..|+++|. +..|+. .++++||..||.+++++
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG--GITYQDQPWHADCFVCVTCSKKLA-GQRFTA-VEDQYYCVDCYKNFVSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT--CEEETTEEECTTTTBCTTTCCBCT-TSCEEE-CSSCEEEHHHHHHHHTC
T ss_pred CCcCCCcccCCEeCcc--eEEECccccccCcCEECCCCCCCC-CCccEe-ECCEEECHHHhHHHhcC
Confidence 4678999999999754 458999999999999999999996 555655 78999999999999886
No 146
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=1.3e-12 Score=92.06 Aligned_cols=63 Identities=25% Similarity=0.451 Sum_probs=54.2
Q ss_pred cCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 128 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
+.++|..|+++|.+ .++.+.++.||++||+|..|+++|..+ .|+. .++++||..||.+++++.
T Consensus 4 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~-~f~~-~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLADI-GFVK-NAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CSSBCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBCSSS-CCEE-ETTEEECHHHHHHHHCCC
T ss_pred CCCcCccCCCEecc--eEEEECcccccccCCEeCCCCCcCCCC-ccEe-ECCeEECHHHhhhhcCCC
Confidence 46799999999975 356899999999999999999999755 4544 799999999999999873
No 147
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=1.3e-12 Score=91.96 Aligned_cols=64 Identities=23% Similarity=0.463 Sum_probs=55.0
Q ss_pred ccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 127 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
.++++|..|+++|.+. .+.+.++.||++||+|..|+++|. +..|+. .++++||..||.+++++.
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~~f~~~ 66 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG--GVTYREQPWHKECFVCTACRKQLS-GQRFTA-RDDFAYCLNCFCDLYASG 66 (70)
T ss_dssp CCCCBCSSSCCBCCSS--EEESSSSEEETTTSBCSSSCCBCT-TSCCEE-SSSSEECHHHHHHHTCCC
T ss_pred CCCCCCcccCCeeccc--eEEECccccCCCCCccCCCCCcCC-cCceEe-eCCeEECHHHHHHHhccc
Confidence 5678999999999754 468999999999999999999995 455654 789999999999998873
No 148
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.31 E-value=6.5e-13 Score=92.21 Aligned_cols=61 Identities=23% Similarity=0.548 Sum_probs=51.5
Q ss_pred cCcCCCCCCCCCCCCCceecccCcccc--CCCcccccCCCCCCCCCceeeccCCcccc-cchhHHH
Q psy4325 128 FGTKCAGCEMGIPPTQVVRRAQDLVYH--LNCFACVMCARQLNTGDEFYLMEDRKLVC-KPDYEAA 190 (306)
Q Consensus 128 ~~~~C~~C~~~I~~~~~~~~~~~~~~H--~~CF~C~~C~~~l~~g~~~~~~~~~~~~C-~~c~~~~ 190 (306)
|+++|.+|+++|...+.++.+.|+.|| ++||+|..|+++|. +..|+. .++++|| .+||.++
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMP-VEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCT-TSCCEE-ETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCC-CCceEE-ECCEEecCHHHhhhh
Confidence 578999999999875567789999999 99999999999995 555655 6899999 8888654
No 149
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2.2e-12 Score=92.35 Aligned_cols=66 Identities=21% Similarity=0.442 Sum_probs=56.0
Q ss_pred cccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCccccc-chhHHHhhcc
Q psy4325 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK-PDYEAAKAKD 194 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~-~c~~~~~~~~ 194 (306)
..++++|..|+++|...+.+ .+.++.||++||+|..|+++|. +..|+. .++.+||. .||.+++++.
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKV-SSLGKDWHKFCLKCERCSKTLT-PGGHAE-HDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEE-EETTEEEETTTCBCSSSCCBCC-TTSCEE-ETTEEECTTTHHHHHSCSS
T ss_pred CCCCCCCcCCCCEeECCeEE-EECCeEeeCCCCCCCCCCCccC-CCceEe-ECCEEecchHHHHHhcccc
Confidence 45678999999999866654 6999999999999999999996 445655 68999999 8999998863
No 150
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2e-12 Score=93.37 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=53.6
Q ss_pred ccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 127 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
.+.++|..|+++|.+ .+|.+.++.||++||+|..|+++|..+ +| ..++.+||..||.+++++.
T Consensus 13 ~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~~~--~f-~~~g~~yC~~cy~~~f~p~ 75 (79)
T 2cor_A 13 LGKYICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKELTAD--AR-ELKGELYCLPCHDKMGVSG 75 (79)
T ss_dssp CCCCBCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCCBCCTT--CE-EETTEEECHHHHHTTSCCS
T ss_pred cCCCCCccCCCEecc--eEEEECcceeCCCCCEeCCCCCccCCC--CE-eECCEEeCHHHHHHhCCCC
Confidence 456899999999984 456899999999999999999999744 34 4699999999999998873
No 151
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=101.54 Aligned_cols=65 Identities=28% Similarity=0.521 Sum_probs=54.8
Q ss_pred cccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCC-CCCceeeccCCcccccchhHHHhh
Q psy4325 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLN-TGDEFYLMEDRKLVCKPDYEAAKA 192 (306)
Q Consensus 126 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~-~g~~~~~~~~~~~~C~~c~~~~~~ 192 (306)
..++++|.+|+++|.+.+ ++.+.++.||++||+|..|++.|. .|..|+. .++.+||..||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~-~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF-LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS-EEEETTEEEETTTSBCTTTCCBGGGTTCCCBC-SSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcE-EEEeCCcEEcccccCcCcCCCcccccCCceEE-ECCEEeCHHHhhhhcC
Confidence 445689999999998654 458999999999999999999996 3556665 7999999999998874
No 152
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.27 E-value=7.4e-13 Score=112.26 Aligned_cols=59 Identities=27% Similarity=0.450 Sum_probs=53.0
Q ss_pred CCCCCCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhC---------------------CCccchhcccccchhHH
Q psy4325 201 DQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTG---------------------LDMRVVQVWFQNRRAKE 259 (306)
Q Consensus 201 ~~~~kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~---------------------l~~~~V~~WFqNrR~k~ 259 (306)
.++.+|.|+.|+..|+.+|+..|..++||+..+|++||..++ |++.+|++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 345678899999999999999999999999999999999987 89999999999999863
No 153
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=3.9e-12 Score=92.00 Aligned_cols=62 Identities=34% Similarity=0.660 Sum_probs=53.3
Q ss_pred CcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 129 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
.++|..|+++|...+. +.+.++.||++||+|..|++.|. + .|+. .++++||..||.++|++.
T Consensus 15 ~~~C~~C~~~I~~~~~-v~a~~~~wH~~CF~C~~C~~~L~-~-~~~~-~~g~~yC~~~y~~~fg~~ 76 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQS-LLALDKQWHVSCFKCQTCSVILT-G-EYIS-KDGVPYCESDYHAQFGSG 76 (80)
T ss_dssp CSCCTTTCCCCSSSCC-EEETTEEECTTTCBCSSSCCBCS-S-CCEE-ETTEEECTTHHHHHTTCC
T ss_pred CCCCcCcCCeeCCCeE-EEECCcccccccCCcCcCCCCcC-C-CeEE-ECCEEECHHHHHHHcCCC
Confidence 4689999999986555 47999999999999999999996 4 4654 799999999999999874
No 154
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.26 E-value=1.9e-12 Score=93.38 Aligned_cols=63 Identities=17% Similarity=0.456 Sum_probs=54.0
Q ss_pred CcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhccC
Q psy4325 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKDG 195 (306)
Q Consensus 129 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~~ 195 (306)
.++|..|+++|.+. ++.+.++.||++||+|..|++.|. +..|+. .++.+||..||.+++++.+
T Consensus 15 ~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 15 LPMCDKCGTGIVGV--FVKLRDRHRHPECYVCTDCGTNLK-QKGHFF-VEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCSSSCCCCCSS--CEECSSCEECTTTTSCSSSCCCHH-HHCCEE-SSSCEECHHHHHHHHSSCC
T ss_pred CCccccCCCCccCc--EEEECcceeCcCcCeeCCCCCCCC-CCCeEe-ECCEEECHHHHHHHhCCCC
Confidence 57999999999864 568999999999999999999995 344554 6899999999999998743
No 155
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.24 E-value=4.6e-12 Score=93.55 Aligned_cols=63 Identities=25% Similarity=0.523 Sum_probs=53.8
Q ss_pred cCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 128 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
..++|..|+++|.+ .++.+.++.||++||+|..|++.|..+ .|+. .++.+||..||.+++++.
T Consensus 24 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~~f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLKQK-GYFF-VEGELYCETHARARTSGP 86 (89)
T ss_dssp SCCBCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCTTTS-CCEE-ETTEEECHHHHHHHSSSC
T ss_pred cCCCcccCCCEecc--cEEEECCceECccCCEecCCCCCCCCC-CeEe-ECCEEECHHHHHHHhCCC
Confidence 35789999999986 356899999999999999999999654 4555 689999999999998874
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=4.2e-12 Score=92.33 Aligned_cols=63 Identities=21% Similarity=0.444 Sum_probs=52.5
Q ss_pred CcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceee-ccCCcccccchhHHHhhc
Q psy4325 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYL-MEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 129 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~-~~~~~~~C~~c~~~~~~~ 193 (306)
.++|..|+++|...+.+ .+.++.||.+||+|..|++.|..+. |+. ..++++||..||.++++.
T Consensus 15 ~~~C~~C~~~I~~~e~v-~a~~~~wH~~CF~C~~C~~~L~~~~-~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL-CVNGHFFHRSCFRCHTCEATLWPGG-YEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SCBCSSSCCBCCTTTBC-CBTTBCCBTTTCBCSSSCCBCCTTS-EECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCcccCCCcccceEE-EECCCeeCCCcCEEcCCCCCcCCCc-eeEeCcCCEEEChHHHHhhhcC
Confidence 46899999999877666 5999999999999999999996544 442 368999999999877764
No 157
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.21 E-value=4.5e-12 Score=91.83 Aligned_cols=64 Identities=22% Similarity=0.553 Sum_probs=52.7
Q ss_pred cCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhcc
Q psy4325 128 FGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAKD 194 (306)
Q Consensus 128 ~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~~ 194 (306)
..++|..|+++|...+. +.+.++.||++||+|..|+++|..+ .|+. .++++||..||.+++++.
T Consensus 6 ~~~~C~~C~~~I~~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~~~~yC~~cy~~~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEE-VQCDGRSFHRCCFLCMVCRKNLDST-TVAI-HDAEVYCKSCYGKKYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTTE-EEETTEEEESSSEECSSSCCEECSS-CCEE-ETTEEECSHHHHHHCC--
T ss_pred CCCcCcCcCccccCcee-EEeCCcccccccCccCCCCCCCCCC-CeEe-eCCEEECHHHHHHHhCCc
Confidence 45799999999976664 5899999999999999999999654 4555 699999999999999874
No 158
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=1e-11 Score=95.99 Aligned_cols=65 Identities=26% Similarity=0.627 Sum_probs=55.5
Q ss_pred CcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCC-CCceeeccCCcccccchhHHHhhccC
Q psy4325 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNT-GDEFYLMEDRKLVCKPDYEAAKAKDG 195 (306)
Q Consensus 129 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~-g~~~~~~~~~~~~C~~c~~~~~~~~~ 195 (306)
.++|..|+++|.+.+ ++.+.++.||++||+|..|+++|.. |..|+. .++++||..||.++|++..
T Consensus 3 ~~~C~~C~~~I~~~~-~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~~y~~~f~~~c 68 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY-FLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLGGSGG 68 (114)
T ss_dssp CBCBSSSCSCBCSSE-EEECSSSEECTTTCCCSSSCSCCCCSSSCCCC-BTTBCCCHHHHHHHHTSCC
T ss_pred CCCCcCCCCeeCCcE-EEEECchhHHHhcCcccccCCchhcCCCeeEE-ECCeeechHHHHHHhCccc
Confidence 368999999998653 5589999999999999999999974 456655 7999999999999999853
No 159
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.20 E-value=7e-12 Score=89.68 Aligned_cols=63 Identities=24% Similarity=0.512 Sum_probs=53.5
Q ss_pred cCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCCCCceeeccCCccccc-chhHHHhhccC
Q psy4325 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCK-PDYEAAKAKDG 195 (306)
Q Consensus 130 ~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~-~c~~~~~~~~~ 195 (306)
|+|..|+++|...+. +.+.++.||++||+|..|+++|..+ .|+. .++.+||. .||.+++++..
T Consensus 1 p~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~cy~~~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAER-VTSLGKDWHRPCLKCEKCGKTLTSG-GHAE-HEGKPYCNHPCYSAMFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGGE-EEETTEEEETTTCBCTTTCCBCCTT-TEEE-ETTEEEETTTHHHHHSSCCC
T ss_pred CcCCCCCCEEECceE-EEECCccccCCCCCccccCccCCCC-ceEC-cCCeEeeCHHHHHHHhCccC
Confidence 589999999985555 5789999999999999999999654 5654 79999999 79999998743
No 160
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.16 E-value=3e-12 Score=120.15 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=52.7
Q ss_pred CCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
++.++.++..|+..|++.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 35677899999999999999999999999999999999999999999999999875
No 161
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=1.2e-11 Score=96.77 Aligned_cols=65 Identities=28% Similarity=0.533 Sum_probs=55.7
Q ss_pred ccCcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCC-CCceeeccCCcccccchhHHHhhc
Q psy4325 127 RFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNT-GDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 127 ~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~-g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
.+.++|..|+++|.+.+. +.+.++.||++||+|..|+++|.. +..|+. .++++||..||.+++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~-~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~ 68 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFL-LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGN 68 (122)
T ss_dssp SCCCCBSSSSSCCCSSCC-EEETTEEECHHHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCC
T ss_pred CCCCCCcccCCEeCCcEE-EEECCceeHhhCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCC
Confidence 457899999999987653 579999999999999999999962 445654 79999999999999987
No 162
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.90 E-value=3.9e-10 Score=67.90 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=18.8
Q ss_pred cchhcccccchhHHHHhhhhc
Q psy4325 246 RVVQVWFQNRRAKEKRLKKDA 266 (306)
Q Consensus 246 ~~V~~WFqNrR~k~k~~~~~~ 266 (306)
+||+|||||||+||||.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 599999999999999987764
No 163
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.75 E-value=9.1e-06 Score=47.07 Aligned_cols=29 Identities=28% Similarity=0.881 Sum_probs=26.1
Q ss_pred CCCCccCCCeeccceeeeecCccccccCc
Q psy4325 70 IPKCGGCGDLILDRFILKVLERTWHARCL 98 (306)
Q Consensus 70 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 98 (306)
.+.|..|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35899999999987788899999999998
No 164
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.41 E-value=5.3e-05 Score=43.79 Aligned_cols=29 Identities=34% Similarity=0.697 Sum_probs=25.7
Q ss_pred CcCCCCCCCCCCCCCceecccCccccCCCc
Q psy4325 129 GTKCAGCEMGIPPTQVVRRAQDLVYHLNCF 158 (306)
Q Consensus 129 ~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF 158 (306)
.++|..|++.+...+.+ .+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~-~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKV-NCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCC-CSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeE-EECCeEecccCC
Confidence 47899999999888776 589999999998
No 165
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.02 E-value=0.013 Score=39.83 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=38.6
Q ss_pred chHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhccccc
Q psy4325 212 TAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQN 254 (306)
Q Consensus 212 s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqN 254 (306)
+....+.|+.+|.............|+.+..|+..||+-||--
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3445678999999999999999999999999999999999953
No 166
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=83.29 E-value=1 Score=33.83 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=45.5
Q ss_pred CccccccCcccCcCCCCCCCcceeeCCeeccccccccccCcCCCCCCCCCCCCCcee-cccCccccCCCcccccCCCCCC
Q psy4325 90 ERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVR-RAQDLVYHLNCFACVMCARQLN 168 (306)
Q Consensus 90 ~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~-~~~~~~~H~~CF~C~~C~~~l~ 168 (306)
++.||..|..=. +........+..+|..|- .|..|++.-.+...++ ..-+..||..|.. -+|.
T Consensus 30 ~~~~H~~Cl~~~-----~~~~~~~~~~~W~C~~C~------~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-----ppl~ 93 (114)
T 2kwj_A 30 GRSGHPTCLQFT-----LNMTEAVKTYKWQCIECK------SCILCGTSENDDQLLFCDDCDRGYHMYCLN-----PPVA 93 (114)
T ss_dssp CCEECTTTTTCC-----HHHHHHHHHTTCCCGGGC------CCTTTTCCTTTTTEEECSSSCCEEETTTSS-----SCCS
T ss_pred CCccchhhCCCh-----hhhhhccCCCccCccccC------ccCcccccCCCCceEEcCCCCccccccccC-----CCcc
Confidence 577887764211 100011345678888883 6899988754443332 3456779988742 1231
Q ss_pred CCCceeeccCCcccccchhHHH
Q psy4325 169 TGDEFYLMEDRKLVCKPDYEAA 190 (306)
Q Consensus 169 ~g~~~~~~~~~~~~C~~c~~~~ 190 (306)
.+..+.-+|..|....
T Consensus 94 ------~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 94 ------EPPEGSWSCHLCWELL 109 (114)
T ss_dssp ------SCCSSCCCCHHHHHHH
T ss_pred ------CCCCCCeECccccchh
Confidence 1245678999886544
No 167
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.81 E-value=2.1 Score=31.72 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=52.9
Q ss_pred CCCCccCCCeeccceee--eecCccccccCcccCcCCCCCCCcceeeCCeeccccccccccCcCCCCCCCCCCCCCcee-
Q psy4325 70 IPKCGGCGDLILDRFIL--KVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIPPTQVVR- 146 (306)
Q Consensus 70 ~~~C~~C~~~I~~~~~~--~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~- 146 (306)
...|..|+..-....++ ..=++.||..|..=.. .+ ...+..+|..|. .|..|++.-.....++
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~------~~~~~W~C~~C~------~C~~C~~~~~~~~ll~C 72 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP------LKRAGWQCPECK------VCQNCKQSGEDSKMLVC 72 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT------TTSTTCCCTTTC------CCTTTCCCSCCTTEEEC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc------ccccCccCCcCC------cccccCccCCCCCeeEC
Confidence 45788887653222122 2235788887754321 11 234678898885 6889988754332221
Q ss_pred cccCccccCCCcccccCCCCCCCCCceeeccCCcccccchh
Q psy4325 147 RAQDLVYHLNCFACVMCARQLNTGDEFYLMEDRKLVCKPDY 187 (306)
Q Consensus 147 ~~~~~~~H~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~ 187 (306)
..-++.||..|.. -+|. .+..+.-+|..|.
T Consensus 73 d~C~~~yH~~Cl~-----ppl~------~~P~g~W~C~~C~ 102 (111)
T 2ysm_A 73 DTCDKGYHTFCLQ-----PVMK------SVPTNGWKCKNCR 102 (111)
T ss_dssp SSSCCEEEGGGSS-----SCCS------SCCSSCCCCHHHH
T ss_pred CCCCcHHhHHhcC-----Cccc------cCCCCCcCCcCCc
Confidence 3457789988752 1221 1134678888874
No 168
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.58 E-value=0.81 Score=31.33 Aligned_cols=46 Identities=9% Similarity=0.233 Sum_probs=28.8
Q ss_pred cCcccCcCCCCCCCcceeeCCeeccccccccccC---cCCCCCCCCCCC
Q psy4325 96 RCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG---TKCAGCEMGIPP 141 (306)
Q Consensus 96 ~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 141 (306)
.-|.|..|...+..-....-|..||..|..+.+. ..|..|+.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3467777777665533344688888888755442 356666666643
No 169
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.23 E-value=1.8 Score=32.24 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=27.4
Q ss_pred CcccCcCCCCCCCccee-eCCeeccccccccccCcCCCCCCCCCC
Q psy4325 97 CLKCHECGAPLAEKCFA-RNGLLFCKEDFFKRFGTKCAGCEMGIP 140 (306)
Q Consensus 97 Cf~C~~C~~~l~~~~f~-~~g~~yC~~cy~~~~~~~C~~C~~~I~ 140 (306)
-+.|.+|...+...... .=|..||..|....+...|..|..++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 35667776666443333 346778888876665566777776663
No 170
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.07 E-value=1.1 Score=30.04 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=16.5
Q ss_pred CeeccccccccccC-----cCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRFG-----TKCAGCEMGIPP 141 (306)
Q Consensus 116 g~~yC~~cy~~~~~-----~~C~~C~~~I~~ 141 (306)
|..||..|..+.+. ..|..|..+|..
T Consensus 39 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 39 GHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 55677777655442 367888777743
No 171
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.77 E-value=0.63 Score=30.82 Aligned_cols=44 Identities=25% Similarity=0.521 Sum_probs=23.8
Q ss_pred ccCcCCCCCCCcceeeCCeecccccccccc---CcCCCCCCCCCCCC
Q psy4325 99 KCHECGAPLAEKCFARNGLLFCKEDFFKRF---GTKCAGCEMGIPPT 142 (306)
Q Consensus 99 ~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 142 (306)
.|..|...+.......=|..||..|..+.+ ...|..|..+|...
T Consensus 17 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp ECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 444444443322222235667777776544 34688888777543
No 172
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=79.17 E-value=0.78 Score=34.68 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=5.1
Q ss_pred CCccCCCeec
Q psy4325 72 KCGGCGDLIL 81 (306)
Q Consensus 72 ~C~~C~~~I~ 81 (306)
.|..|.+.+.
T Consensus 9 ~C~IC~~~~~ 18 (133)
T 4ap4_A 9 SCPICMDGYS 18 (133)
T ss_dssp BCTTTCCBHH
T ss_pred CCcccChhhh
Confidence 4555555443
No 173
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.09 E-value=5.3 Score=29.52 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=30.9
Q ss_pred CCCCccCCCeeccceeeeec----CccccccCcccCcCCCCCCCcceeeCCeeccccccccccCcCCCCCCCCC
Q psy4325 70 IPKCGGCGDLILDRFILKVL----ERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGI 139 (306)
Q Consensus 70 ~~~C~~C~~~I~~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~~C~~~I 139 (306)
...|..|+. ++.++.-. .+.||..|.. |.. .-.|..||..| .|..|++..
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~---~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ---PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS---CCSSCCCCGGG-------BCTTTCSBC
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc---CCCCCEECCCC-------CCCcCCCCC
Confidence 346888874 23443233 2678877653 322 23578999988 588888764
No 174
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.81 E-value=3 Score=26.57 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=19.0
Q ss_pred ccCcCCCCCCCcceeeCCeeccccccccccCcCCCCCCCCCC
Q psy4325 99 KCHECGAPLAEKCFARNGLLFCKEDFFKRFGTKCAGCEMGIP 140 (306)
Q Consensus 99 ~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 140 (306)
.|..|...+.......=|..||..|..+ ....|..|...+.
T Consensus 8 ~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp SCSSSCSSCBCCSCSTTSCCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred CceEeCCccCCeEEcCCCCcccHHHHcc-CCCCCCcCCcEee
Confidence 3444444443221122244455555433 3345666666653
No 175
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.53 E-value=1.4 Score=31.22 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=37.0
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
.++..++.+|...|-..- ...++|..+|++...|+.+...-|.+.|+.-..
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777766432221 367899999999999999999888888775443
No 176
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=76.14 E-value=1.4 Score=29.91 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=26.1
Q ss_pred cccCcCCCCCCCcceee-CCeeccccccccccC----cCCCCCCCCCCCCCc
Q psy4325 98 LKCHECGAPLAEKCFAR-NGLLFCKEDFFKRFG----TKCAGCEMGIPPTQV 144 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~-~g~~yC~~cy~~~~~----~~C~~C~~~I~~~~~ 144 (306)
+.|.+|...+....... =|..||..|..+.+. ..|..|..++...+.
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 45555555554332222 266777777755442 468888777644433
No 177
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.53 E-value=1.8 Score=29.13 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=25.5
Q ss_pred cccCcCCCCCCCccee-eCCeecccccccccc--CcCCCCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFA-RNGLLFCKEDFFKRF--GTKCAGCEMGIPPTQ 143 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~-~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~~ 143 (306)
+.|..|...+...... .=|..||..|..+.+ ...|..|..+|...+
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4555555555432222 335667777764433 356778877775543
No 178
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.90 E-value=2 Score=29.50 Aligned_cols=26 Identities=23% Similarity=0.639 Sum_probs=15.7
Q ss_pred Ceecccccccccc--------CcCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--------GTKCAGCEMGIPP 141 (306)
Q Consensus 116 g~~yC~~cy~~~~--------~~~C~~C~~~I~~ 141 (306)
|..||..|..+.+ ...|..|...+..
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 38 GHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4556766664422 3567777777754
No 179
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=74.74 E-value=1.9 Score=32.45 Aligned_cols=93 Identities=14% Similarity=0.271 Sum_probs=59.7
Q ss_pred CcccCcCCCCCCCc-----c-e-eeCCeecccccccccc--CcCCCCCCCCCCCCCceecccCccccCCCcccccCCCCC
Q psy4325 97 CLKCHECGAPLAEK-----C-F-ARNGLLFCKEDFFKRF--GTKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQL 167 (306)
Q Consensus 97 Cf~C~~C~~~l~~~-----~-f-~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l 167 (306)
=+.|.+|...+... . . ..=|..||..|..+.+ ...|..|.+.+......... .-.+=..|.+|...+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~----i~~~~~~C~iC~~~~ 82 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY----IGSGTVSCPICMDGY 82 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECB----CSSSSCBCTTTCCBH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccc----cCCCCCCCCCCCCcc
Confidence 36888998877432 1 2 3348999999986543 35899999999765443211 123446689998877
Q ss_pred CCC----CceeeccCCcccccchhHHHhhc
Q psy4325 168 NTG----DEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 168 ~~g----~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
... .......=|..||..|..+....
T Consensus 83 ~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 112 (133)
T 4ap4_A 83 SEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112 (133)
T ss_dssp HHHHHTTCCEEEETTSBEEEHHHHHHHHHH
T ss_pred ccccccCcceEeCCCCChhhHHHHHHHHHc
Confidence 421 11123345778999998766544
No 180
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=72.99 E-value=2.5 Score=30.70 Aligned_cols=46 Identities=2% Similarity=-0.005 Sum_probs=30.7
Q ss_pred ccCcccCcCCCCCCCcceeeCCeecccccccccc--CcCCCCCCCCCC
Q psy4325 95 ARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF--GTKCAGCEMGIP 140 (306)
Q Consensus 95 ~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 140 (306)
+.-|.|..|...+.+-.....|..||..|..+.+ ...|..|+.++.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 5678899998887765555589999998864432 234555555543
No 181
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=69.85 E-value=1.9 Score=29.61 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=15.0
Q ss_pred Ceecccccccccc--------CcCCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--------GTKCAGCEMGIPPT 142 (306)
Q Consensus 116 g~~yC~~cy~~~~--------~~~C~~C~~~I~~~ 142 (306)
|..||..|..+.+ ...|..|..++...
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 38 NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4556666654321 34677777776443
No 182
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=69.51 E-value=2.8 Score=30.34 Aligned_cols=45 Identities=0% Similarity=-0.091 Sum_probs=27.8
Q ss_pred ccCcccCcCCCCCCCcceeeCC-eecccccccccc--CcCCCCCCCCC
Q psy4325 95 ARCLKCHECGAPLAEKCFARNG-LLFCKEDFFKRF--GTKCAGCEMGI 139 (306)
Q Consensus 95 ~~Cf~C~~C~~~l~~~~f~~~g-~~yC~~cy~~~~--~~~C~~C~~~I 139 (306)
+.-|.|..|...+.+-.....| ..||..|..+.+ ...|..|+.++
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 4567888888777665445566 889888864432 13444444444
No 183
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=69.48 E-value=2.3 Score=28.92 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=12.8
Q ss_pred Ceecccccccccc---------CcCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF---------GTKCAGCEMGIP 140 (306)
Q Consensus 116 g~~yC~~cy~~~~---------~~~C~~C~~~I~ 140 (306)
|..||..|..+.+ ...|..|..++.
T Consensus 31 gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 31 GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4455666654322 235666666554
No 184
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=68.97 E-value=1.6 Score=28.19 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=29.8
Q ss_pred CcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccc
Q psy4325 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNR 255 (306)
Q Consensus 208 rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNr 255 (306)
+..|+.+........+.. .........++|..+|++..+|..|....
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456777666555443332 22211126789999999999999997643
No 185
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.72 E-value=2.4 Score=31.05 Aligned_cols=43 Identities=26% Similarity=0.539 Sum_probs=21.9
Q ss_pred cccCcCCCCCCCcceeeCCeeccccccccccC-----cCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRFG-----TKCAGCEMGIP 140 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~-----~~C~~C~~~I~ 140 (306)
+.|..|...+.......=|..||..|..+.+. ..|..|..+|.
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 45666665554322222356677777644332 24666655553
No 186
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.51 E-value=2.9 Score=27.87 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=14.3
Q ss_pred Ceecccccccccc--CcCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--GTKCAGCEMGIP 140 (306)
Q Consensus 116 g~~yC~~cy~~~~--~~~C~~C~~~I~ 140 (306)
|..||..|..+.+ ...|..|...|.
T Consensus 34 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 34 KHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp TEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4556666654322 245777776664
No 187
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=68.13 E-value=2.6 Score=31.15 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=16.6
Q ss_pred cccCcCCCCCCCcceeeCCeeccccccccc
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKR 127 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~ 127 (306)
+.|.+|...+.......=|..||..|..+.
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQST 45 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCC
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHH
Confidence 566666665543222223666777776543
No 188
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=68.05 E-value=1.6 Score=26.61 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCccchhcccccchhH
Q psy4325 233 VREQLSQDTGLDMRVVQVWFQNRRAK 258 (306)
Q Consensus 233 ~r~~La~~~~l~~~~V~~WFqNrR~k 258 (306)
...+||+.+|++...|..|+.....+
T Consensus 23 s~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 23 PRQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp CHHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred CHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 35689999999999999999765543
No 189
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=67.45 E-value=3 Score=31.43 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=38.0
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
.|..+|.++...+-..+..++... ..++|+.+|++..+|..|..+++....
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 577899999877766654445443 336899999999999999988776543
No 190
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=65.85 E-value=3 Score=30.28 Aligned_cols=46 Identities=9% Similarity=0.137 Sum_probs=35.3
Q ss_pred CcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHH
Q psy4325 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259 (306)
Q Consensus 208 rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~ 259 (306)
...++..++++|...++-. ..+++|..+|+++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5678999999988765322 247899999999999999877655553
No 191
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=65.80 E-value=2.9 Score=32.17 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=20.6
Q ss_pred cccCcCCCCCCCcceeeCCeecccccccccc--CcCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRF--GTKCAGCEMGI 139 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~--~~~C~~C~~~I 139 (306)
+.|..|...+.......=|..||..|..+.+ ...|..|..+|
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 4566666555432222235667777764322 12344444444
No 192
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=65.39 E-value=2.8 Score=25.04 Aligned_cols=41 Identities=7% Similarity=0.168 Sum_probs=26.4
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccc
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNR 255 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNr 255 (306)
.++..+...+...+.. .. ...++|+.+|++...|..|....
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 3455555443333332 22 36678999999999999997543
No 193
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.88 E-value=2.9 Score=27.46 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=35.0
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
.+++.+..+|...|-.. ....++|..+|++...|+.+...-+.+-++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46777888887754322 1356899999999999999888777776653
No 194
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=63.69 E-value=2.7 Score=29.44 Aligned_cols=46 Identities=2% Similarity=-0.029 Sum_probs=29.4
Q ss_pred ccCcccCcCCCCCCCcceeeCCeecccccccccc--CcCCCCCCCCCC
Q psy4325 95 ARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF--GTKCAGCEMGIP 140 (306)
Q Consensus 95 ~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 140 (306)
+.-|.|..|...+.+-.....|..||..|..+.+ ...|..|+.++.
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 4567888888877665544578889888864432 234555555553
No 195
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.54 E-value=4.3 Score=27.49 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=26.4
Q ss_pred cccCcCCCCCCCcceeeCCee-ccccccccccCcCCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLL-FCKEDFFKRFGTKCAGCEMGIPP 141 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~-yC~~cy~~~~~~~C~~C~~~I~~ 141 (306)
+.|..|...+....+..=|.. ||..|..+. ..|..|..+|..
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCC--CCCccCCceecC
Confidence 356666655544333333555 888887543 688888888854
No 196
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.35 E-value=2.4 Score=29.12 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=12.5
Q ss_pred Ceecccccccccc--CcCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--GTKCAGCEMGI 139 (306)
Q Consensus 116 g~~yC~~cy~~~~--~~~C~~C~~~I 139 (306)
|..||..|..+.+ ...|..|..++
T Consensus 34 gH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 34 RHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp SCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 4556666654332 23466665555
No 197
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.69 E-value=4.5 Score=27.76 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=10.9
Q ss_pred CCCCCccCCCeeccc
Q psy4325 69 SIPKCGGCGDLILDR 83 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~ 83 (306)
....|+.|...|...
T Consensus 14 ~i~~C~IC~~~i~~g 28 (74)
T 2ct0_A 14 AVKICNICHSLLIQG 28 (74)
T ss_dssp SSCBCSSSCCBCSSS
T ss_pred CCCcCcchhhHcccC
Confidence 345799998888643
No 198
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=59.38 E-value=5.2 Score=27.03 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=25.6
Q ss_pred cccCcCCCCCCCcceeeCCee-ccccccccccCcCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLL-FCKEDFFKRFGTKCAGCEMGIP 140 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~-yC~~cy~~~~~~~C~~C~~~I~ 140 (306)
+.|..|...+....+.-=|.. +|..|.... ..|..|..+|.
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 356666655544333333555 888887654 67888888774
No 199
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=58.87 E-value=4.7 Score=24.43 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=16.7
Q ss_pred CceeeccCCcccccchhHHHhh
Q psy4325 171 DEFYLMEDRKLVCKPDYEAAKA 192 (306)
Q Consensus 171 ~~~~~~~~~~~~C~~c~~~~~~ 192 (306)
..||...+.+++|..||++.-.
T Consensus 19 CpF~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 19 CPFFMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp CCSBCCTTTTTSCHHHHHHHHT
T ss_pred CCeEEEecCccchHHHHHHHhh
Confidence 4456667889999999986644
No 200
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=58.55 E-value=4.7 Score=34.46 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=33.5
Q ss_pred ccCcccCcCCCCCCCcceeeCCeecccccccccc---CcCCCCCCCCCCCC
Q psy4325 95 ARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF---GTKCAGCEMGIPPT 142 (306)
Q Consensus 95 ~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 142 (306)
+.-|.|..|...+.+-.....|..||..|..+.+ ...|..|+.++...
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 4678899998887665555579999999875433 23477777777443
No 201
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=58.38 E-value=4.8 Score=26.95 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=36.1
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
..+++.+..++...|-.... ....-.++|..+|++...|+.|....+.+-+
T Consensus 9 ~~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34788888888887641100 0123568899999999999998877777766
No 202
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.38 E-value=6.3 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=17.1
Q ss_pred cCCCCCCCCCCCCCceecccCccccCCCcccccCCCCCC
Q psy4325 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLN 168 (306)
Q Consensus 130 ~~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~ 168 (306)
..|..|++++ .+++|.|-+ =|.|..|+..++
T Consensus 62 a~CPdC~q~L----evLkACGAv----dYFC~~chgLiS 92 (101)
T 2jne_A 62 ALCPDCHQPL----QVLKACGAV----DYFCQHGHGLIS 92 (101)
T ss_dssp EECTTTCSBC----EEEEETTEE----EEEETTTTEEEC
T ss_pred ccCcchhhHH----HHHHHhcCc----chhhccCCceee
Confidence 3466666666 244565522 134777776664
No 203
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=58.35 E-value=4.3 Score=28.40 Aligned_cols=44 Identities=16% Similarity=0.344 Sum_probs=29.8
Q ss_pred CCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccc
Q psy4325 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQ 253 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFq 253 (306)
++.+..++.++.......+. ... ...++|+.+|++..+|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34566777777544444443 221 356889999999999999974
No 204
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=58.34 E-value=7.4 Score=29.78 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=36.4
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhhhh
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKD 265 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~~~ 265 (306)
.+++.++.++...++. ....++|..+|++...|+.+...-|.+.|+.-..
T Consensus 109 ~L~~~~r~v~~~~~~g------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 109 NFSKFEKEVLTYLIRG------YSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HSCHHHHHHHHHHTTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777633322 2467899999999999999998888887765443
No 205
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=58.23 E-value=4.4 Score=34.48 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=11.3
Q ss_pred CCCCCccCCCeeccc
Q psy4325 69 SIPKCGGCGDLILDR 83 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~ 83 (306)
....|..|.+.|..+
T Consensus 179 ~i~~C~iC~~iv~~g 193 (238)
T 3nw0_A 179 AVKICNICHSLLIQG 193 (238)
T ss_dssp TCCBCTTTCSBCSSC
T ss_pred CCCcCcchhhHHhCC
Confidence 367899999888644
No 206
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.84 E-value=4 Score=28.24 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=16.3
Q ss_pred Ceecccccccccc-----CcCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF-----GTKCAGCEMGIPP 141 (306)
Q Consensus 116 g~~yC~~cy~~~~-----~~~C~~C~~~I~~ 141 (306)
|..||..|..+.+ ...|..|..++..
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 38 GHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 5667777765433 2467888777644
No 207
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=57.76 E-value=8.3 Score=23.86 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=4.3
Q ss_pred cCccccCCCc
Q psy4325 149 QDLVYHLNCF 158 (306)
Q Consensus 149 ~~~~~H~~CF 158 (306)
-+..||..|+
T Consensus 27 C~H~f~~~Ci 36 (55)
T 1iym_A 27 CGHGFHAECV 36 (55)
T ss_dssp SCCEECTTHH
T ss_pred CCCcccHHHH
Confidence 3444444443
No 208
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.72 E-value=3.6 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=13.8
Q ss_pred Ceecccccccccc--CcCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--GTKCAGCEMGIPP 141 (306)
Q Consensus 116 g~~yC~~cy~~~~--~~~C~~C~~~I~~ 141 (306)
|..||..|..+.+ ...|..|..+|..
T Consensus 33 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 33 AHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4556666654332 2456666666643
No 209
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.64 E-value=3.3 Score=27.33 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=35.2
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
.+++.+..+|...|....+-. ..-+++|..+|++...|+.+...-+.|.|+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888888888773211111 235778999999999999887766665554
No 210
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.56 E-value=5 Score=28.60 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=35.2
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
..++..++++|...++.. ...++|..+|++...|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 458888988888864332 24789999999999999887766666554
No 211
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.46 E-value=2.1 Score=28.41 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCceecccCccccCCCc--------ccccCCCCCCC
Q psy4325 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCF--------ACVMCARQLNT 169 (306)
Q Consensus 131 ~C~~C~~~I~~~~~~~~~~~~~~H~~CF--------~C~~C~~~l~~ 169 (306)
.|..|...+.. ++..-+..||..|. .|..|...+..
T Consensus 17 ~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 17 ECCICMDGRAD---LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCSSSCCSCCS---EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCeeCCcCccC---cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 45666555533 33445666766664 35555555543
No 212
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=57.18 E-value=6.8 Score=26.95 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=17.0
Q ss_pred Ceecccccccccc---CcCCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF---GTKCAGCEMGIPPT 142 (306)
Q Consensus 116 g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 142 (306)
|..+|..|+.+.. ...|..|.+++...
T Consensus 34 GH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 34 GYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp SCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 5567777765443 34677777777543
No 213
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=57.06 E-value=5.5 Score=29.59 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=37.1
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
.+++.++.++...|...- ...++|..+|++...|+.|...-|.+-++.-
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 467778888777543221 3578999999999999999998888777543
No 214
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.62 E-value=8.2 Score=25.64 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCcee-cccCccccCCCc--------ccccCCCCCCC
Q psy4325 131 KCAGCEMGIPPTQVVR-RAQDLVYHLNCF--------ACVMCARQLNT 169 (306)
Q Consensus 131 ~C~~C~~~I~~~~~~~-~~~~~~~H~~CF--------~C~~C~~~l~~ 169 (306)
.|..|...+.. .++ ..-|..||..|. .|-.|+..+..
T Consensus 17 ~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 17 LCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp SCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 56666665532 222 256777777765 47777777753
No 215
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=56.61 E-value=7.2 Score=26.86 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
...-..++..++++|...++. ....++|..+|++...|+.+..+-+.|.+
T Consensus 16 ~~~~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 16 ERDVNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp -CCGGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 344567889999998885432 24678999999999999988776665544
No 216
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=56.43 E-value=4 Score=29.20 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=21.5
Q ss_pred cccCcCCCCCCCccee-eCCeecccccccccc--CcCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFA-RNGLLFCKEDFFKRF--GTKCAGCEMGI 139 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~-~~g~~yC~~cy~~~~--~~~C~~C~~~I 139 (306)
+.|..|...+...... .=|..||..|..+.+ ...|..|..++
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 4566665555442222 236667777764433 23455555554
No 217
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=55.88 E-value=5.6 Score=30.96 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=37.0
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
..++..++.+|...|-.. ...+++|..+|+++..|+.+...-|.+-|+.
T Consensus 92 ~~Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TTSCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 457778888887653322 2467899999999999999988777777664
No 218
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=55.65 E-value=3.9 Score=30.23 Aligned_cols=45 Identities=27% Similarity=0.583 Sum_probs=28.3
Q ss_pred cccCcCCCCCCCcceeeCCeecccccccccc---CcCCCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRF---GTKCAGCEMGIPPT 142 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 142 (306)
+.|..|...+.......=|..||..|..+.+ ...|..|..+|...
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 5666676666443333347788888875433 34788888887543
No 219
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.54 E-value=13 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.553 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCcee-cccCccccCCCc
Q psy4325 131 KCAGCEMGIPPTQVVR-RAQDLVYHLNCF 158 (306)
Q Consensus 131 ~C~~C~~~I~~~~~~~-~~~~~~~H~~CF 158 (306)
.|..|++.-.+.+.++ ..-+..||..|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl 56 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCL 56 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCcccccccc
Confidence 4778887543333332 345677888774
No 220
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=55.26 E-value=6.2 Score=29.22 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=36.9
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
.+++.++.++...|-..- ...++|..+|++...|+.+....|.+-|+.-
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 467778877777543222 3578999999999999999998888877543
No 221
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.04 E-value=5.5 Score=28.72 Aligned_cols=12 Identities=17% Similarity=0.838 Sum_probs=9.3
Q ss_pred CcccccCCCCCC
Q psy4325 157 CFACVMCARQLN 168 (306)
Q Consensus 157 CF~C~~C~~~l~ 168 (306)
=|.|..|++.+.
T Consensus 80 ~~~C~~C~k~f~ 91 (115)
T 2dmi_A 80 VLKCMYCGHSFE 91 (115)
T ss_dssp SCBCSSSCCBCS
T ss_pred ceECCCCCCccC
Confidence 478888888874
No 222
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=53.96 E-value=8 Score=25.50 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=35.5
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
.-..+++.+++.|...++ .+ ...++|..+|++...|..+...-+.|.+
T Consensus 8 ~~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 345688889888888532 22 3567999999999999988876665544
No 223
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=53.23 E-value=4 Score=30.60 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=24.1
Q ss_pred cccCcCCCCCCCcceeeCCeecccccccccc---CcCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRF---GTKCAGCEMGIP 140 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 140 (306)
+.|..|...+.......=|..||..|....+ ...|..|..+|.
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 5666666655432223336678888775433 125666666664
No 224
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=53.14 E-value=6.3 Score=24.44 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=5.0
Q ss_pred cCCCCCCCCC
Q psy4325 130 TKCAGCEMGI 139 (306)
Q Consensus 130 ~~C~~C~~~I 139 (306)
..|..|..+|
T Consensus 44 ~~CP~Cr~~~ 53 (55)
T 2ecm_A 44 YRCPLCSGPS 53 (55)
T ss_dssp CCCTTSCCSS
T ss_pred CcCCCCCCcC
Confidence 3455555544
No 225
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=53.03 E-value=5.2 Score=29.10 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=16.1
Q ss_pred cccCcCCCCCCCccee-eCCeecccccccc
Q psy4325 98 LKCHECGAPLAEKCFA-RNGLLFCKEDFFK 126 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~-~~g~~yC~~cy~~ 126 (306)
+.|..|...+...... .=|..||..|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~ 45 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVR 45 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHH
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHH
Confidence 5566666655443222 3466777777643
No 226
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=52.47 E-value=4.7 Score=32.02 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=25.5
Q ss_pred cccCcCCCCCCCcceeeCCeeccccccccccC---cCCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRFG---TKCAGCEMGIPP 141 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 141 (306)
|.|.+|...+.......-|..||..|..+.+. ..|..|..+|..
T Consensus 19 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45666666554433333466777777755432 367777776644
No 227
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.43 E-value=19 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCceecccCccccCCCcccccCCCCCCC
Q psy4325 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCFACVMCARQLNT 169 (306)
Q Consensus 131 ~C~~C~~~I~~~~~~~~~~~~~~H~~CF~C~~C~~~l~~ 169 (306)
.|..|++++. ++.+-|-. =|.|..|+..++.
T Consensus 33 fCPeCgq~Le----~lkACGA~----~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQ----VLKACGAV----DYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCC----EEEETTEE----EECCTTTTCCCCT
T ss_pred cCcchhhHHH----HHHhcCCc----CeeeccCCCEeec
Confidence 4555555552 23444432 2457777777753
No 228
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=52.37 E-value=3.7 Score=29.62 Aligned_cols=42 Identities=17% Similarity=0.452 Sum_probs=21.8
Q ss_pred cccCcCCCCCCCcce-eeCCeeccccccccccC---cCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCF-ARNGLLFCKEDFFKRFG---TKCAGCEMGI 139 (306)
Q Consensus 98 f~C~~C~~~l~~~~f-~~~g~~yC~~cy~~~~~---~~C~~C~~~I 139 (306)
+.|..|...+..... ..=|..||..|..+.+. ..|..|..++
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 456666665543322 22266777777644321 3455555555
No 229
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=50.82 E-value=4.7 Score=28.25 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=22.0
Q ss_pred cccCcCCCCCCCcceee-CCeeccccccccccC----cCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFAR-NGLLFCKEDFFKRFG----TKCAGCEMGI 139 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~-~g~~yC~~cy~~~~~----~~C~~C~~~I 139 (306)
+.|..|...+....... =|..||..|....+. ..|..|..++
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 45555655554322233 267788887754331 3555555554
No 230
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=50.75 E-value=5.5 Score=32.34 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=32.7
Q ss_pred ccCcccCcCCCCCCCcceeeCCeecccccccccc---CcCCCCCCCCCCC
Q psy4325 95 ARCLKCHECGAPLAEKCFARNGLLFCKEDFFKRF---GTKCAGCEMGIPP 141 (306)
Q Consensus 95 ~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 141 (306)
+.-|.|..|...+.+-.....|..||..|..+.+ +..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 5678899998888765555679999998864432 2347777766643
No 231
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=50.62 E-value=4.2 Score=30.20 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=26.2
Q ss_pred cccCcCCCCCCCcceeeCCeeccccccccccC---cCCCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRFG---TKCAGCEMGIPPT 142 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~~ 142 (306)
+.|..|...+.......=|..||..|..+.+. ..|..|..+|...
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 45566665554332223366788888755332 3788888877543
No 232
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=50.22 E-value=6.4 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.496 Sum_probs=26.8
Q ss_pred cCcCCCCCCCcc-eeeCCeecccccccc---ccCcCCCCCCCCCCCCCc
Q psy4325 100 CHECGAPLAEKC-FARNGLLFCKEDFFK---RFGTKCAGCEMGIPPTQV 144 (306)
Q Consensus 100 C~~C~~~l~~~~-f~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~~~~ 144 (306)
|..|+.|+.-.. ..-=+..+|.+|+.. .-...|..|..+|..-+.
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 455555553211 111245788888854 445689999999965444
No 233
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=50.12 E-value=4.9 Score=31.43 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=24.0
Q ss_pred cccCcCCCCCCCcceeeCCeeccccccccccC---cCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLLFCKEDFFKRFG---TKCAGCEMGIP 140 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 140 (306)
+.|.+|...+.......=|..||..|....+. ..|..|..+|.
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 56777766664433333466777777644332 24666655553
No 234
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=50.00 E-value=6.3 Score=26.52 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=32.7
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
.+++.+..+|...+. .+ ...++|..+|++...|+.+..+-+.|.+
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 467778888877433 22 3468999999999999988776665544
No 235
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=49.46 E-value=13 Score=28.53 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCCCcccchHhHHHHHhcc-ccCCCCCHHHHHHH-HHhh--CCCccchhcccccc
Q psy4325 205 KRPRTTITAKQLETLKMAY-NTSPKPARHVREQL-SQDT--GLDMRVVQVWFQNR 255 (306)
Q Consensus 205 kr~rt~~s~~q~~~Le~~F-~~~~~p~~~~r~~L-a~~~--~l~~~~V~~WFqNr 255 (306)
++.|.++|.+|...+-..+ +.++..+..+...- ..+. +++..+|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6789999999999999988 67776664433331 2266 77888999998663
No 236
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.43 E-value=5.2 Score=27.90 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=34.7
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
.+++.+..+|...|-...- ....-.++|..+|++...|+.+....+.|-|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4677888888776641100 01246778999999999999987766666553
No 237
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=48.24 E-value=12 Score=26.48 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=28.2
Q ss_pred CcccchHhHHHHHhccccC-CCCCHHHHHHHHHhhCCCccchhcccc
Q psy4325 208 RTTITAKQLETLKMAYNTS-PKPARHVREQLSQDTGLDMRVVQVWFQ 253 (306)
Q Consensus 208 rt~~s~~q~~~Le~~F~~~-~~p~~~~r~~La~~~~l~~~~V~~WFq 253 (306)
|..|+.++....-..+... . .....+|..+|++..+|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 3567777765444433322 2 2367899999999999999964
No 238
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.24 E-value=8.3 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=18.5
Q ss_pred Ceecccccccccc---CcCCCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF---GTKCAGCEMGIPPTQ 143 (306)
Q Consensus 116 g~~yC~~cy~~~~---~~~C~~C~~~I~~~~ 143 (306)
|..||..|..+.+ ...|..|+.++...+
T Consensus 27 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 27 GHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 6677887775542 246888888775543
No 239
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=47.81 E-value=21 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCceecc-cCccccCCC
Q psy4325 131 KCAGCEMGIPPTQVVRRA-QDLVYHLNC 157 (306)
Q Consensus 131 ~C~~C~~~I~~~~~~~~~-~~~~~H~~C 157 (306)
.|..|...+.. .++.. -|..||..|
T Consensus 17 ~C~IC~~~~~~--p~~~~~CgH~fC~~C 42 (74)
T 2yur_A 17 LCLICKDIMTD--AVVIPCCGNSYCDEC 42 (74)
T ss_dssp SCSSSCCCCTT--CEECSSSCCEECTTH
T ss_pred CCcCCChHHhC--CeEcCCCCCHHHHHH
Confidence 46666555532 23333 466666666
No 240
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.62 E-value=18 Score=24.14 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=8.2
Q ss_pred cCCCCCCCCCCCC
Q psy4325 130 TKCAGCEMGIPPT 142 (306)
Q Consensus 130 ~~C~~C~~~I~~~ 142 (306)
..|..|...|...
T Consensus 53 ~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 53 DSCPVCRKSLTGQ 65 (78)
T ss_dssp CSCTTTCCCCCCS
T ss_pred CcCcCcCCccCCc
Confidence 4577777776544
No 241
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=47.36 E-value=6.1 Score=31.19 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=24.2
Q ss_pred CcccCcCCCCCCCccee-eCCeeccccccccccC---cCCCCCCCCC
Q psy4325 97 CLKCHECGAPLAEKCFA-RNGLLFCKEDFFKRFG---TKCAGCEMGI 139 (306)
Q Consensus 97 Cf~C~~C~~~l~~~~f~-~~g~~yC~~cy~~~~~---~~C~~C~~~I 139 (306)
-+.|.+|...+...... .=|..||..|..+.+. ..|..|..+|
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 35677777666553333 3477888888754331 2355554444
No 242
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=47.17 E-value=3.6 Score=26.44 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=14.6
Q ss_pred Ceecccccccccc--CcCCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--GTKCAGCEMGIPPT 142 (306)
Q Consensus 116 g~~yC~~cy~~~~--~~~C~~C~~~I~~~ 142 (306)
|..||..|..+.+ ...|..|..++...
T Consensus 29 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 29 GHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 5556666654322 24566666666443
No 243
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=47.15 E-value=32 Score=24.36 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=36.3
Q ss_pred CCCcccchHhHHHHHhccc-----cCCCCCHHHHHHHHHhhCC--Cccchhcccc
Q psy4325 206 RPRTTITAKQLETLKMAYN-----TSPKPARHVREQLSQDTGL--DMRVVQVWFQ 253 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~-----~~~~p~~~~r~~La~~~~l--~~~~V~~WFq 253 (306)
.....++..++..|+..|. .+.+.+..+...+.+.+|. +..+|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4456788899999988874 5678999999988888875 5566665553
No 244
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.86 E-value=12 Score=24.72 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=20.2
Q ss_pred cccCcCCCCCCCc-ce-e-eCCeecccccccccc--CcCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEK-CF-A-RNGLLFCKEDFFKRF--GTKCAGCEMGI 139 (306)
Q Consensus 98 f~C~~C~~~l~~~-~f-~-~~g~~yC~~cy~~~~--~~~C~~C~~~I 139 (306)
..|.+|...+... .. . .=+..||..|..+.+ ...|..|..+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 3566666665432 12 1 235566666654321 23455555554
No 245
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=45.76 E-value=3.6 Score=27.19 Aligned_cols=26 Identities=23% Similarity=0.614 Sum_probs=13.7
Q ss_pred Ceecccccccccc--CcCCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--GTKCAGCEMGIPP 141 (306)
Q Consensus 116 g~~yC~~cy~~~~--~~~C~~C~~~I~~ 141 (306)
|..||..|..+.+ ...|..|..++..
T Consensus 36 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 36 GHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4456666653321 2456666666643
No 246
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.59 E-value=4.9 Score=28.25 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
.-..++..++.+|...++ .+ ...++|..+|++...|+.+..+-+.|.+
T Consensus 26 ~l~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp TGGGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 345688888888887543 22 2457899999999999988776665544
No 247
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=45.18 E-value=5.2 Score=33.13 Aligned_cols=28 Identities=32% Similarity=0.626 Sum_probs=18.5
Q ss_pred ccCcCCCCCCCcce-eeCCeecccccccc
Q psy4325 99 KCHECGAPLAEKCF-ARNGLLFCKEDFFK 126 (306)
Q Consensus 99 ~C~~C~~~l~~~~f-~~~g~~yC~~cy~~ 126 (306)
+|..|+.......- ..+|+++|.+|+.+
T Consensus 174 ~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 174 RCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp ECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 56666665544333 66888999998854
No 248
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.03 E-value=9.5 Score=23.82 Aligned_cols=10 Identities=40% Similarity=0.633 Sum_probs=4.8
Q ss_pred Ceeccccccc
Q psy4325 116 GLLFCKEDFF 125 (306)
Q Consensus 116 g~~yC~~cy~ 125 (306)
|..||..|..
T Consensus 34 gH~fC~~Ci~ 43 (58)
T 2ecj_A 34 GHNFCKACIT 43 (58)
T ss_dssp CCCCCHHHHH
T ss_pred CCccCHHHHH
Confidence 3445555543
No 249
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.91 E-value=4.3 Score=26.50 Aligned_cols=24 Identities=25% Similarity=0.693 Sum_probs=12.0
Q ss_pred Ceecccccccccc--CcCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--GTKCAGCEMGI 139 (306)
Q Consensus 116 g~~yC~~cy~~~~--~~~C~~C~~~I 139 (306)
|..||..|..+.+ ...|..|..+|
T Consensus 41 gH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 41 GHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp SCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 3445555553322 23566666555
No 250
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=44.23 E-value=8.2 Score=25.14 Aligned_cols=48 Identities=8% Similarity=0.076 Sum_probs=34.0
Q ss_pred CcccCcCCCCCCCccee-eCCeeccccccccccC--cCCCCCCCCCCCCCc
Q psy4325 97 CLKCHECGAPLAEKCFA-RNGLLFCKEDFFKRFG--TKCAGCEMGIPPTQV 144 (306)
Q Consensus 97 Cf~C~~C~~~l~~~~f~-~~g~~yC~~cy~~~~~--~~C~~C~~~I~~~~~ 144 (306)
.|.|..+...+.+-... ..|..|+..+..+.+. .+|...++++...+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 47888888888765555 7899999988765442 358778777755443
No 251
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.92 E-value=10 Score=30.02 Aligned_cols=47 Identities=6% Similarity=-0.018 Sum_probs=32.8
Q ss_pred cchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 211 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
++..++.+|...|-.. ..-+++|..+|++...|+.+...-|.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4455555555433211 1346899999999999999998888887764
No 252
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.55 E-value=12 Score=26.30 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=32.8
Q ss_pred CCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhH
Q psy4325 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k 258 (306)
.....++..++++|....+-. ...++|..||++.+.|+....+-+.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345678899999888876322 36789999999999999866654444
No 253
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=42.60 E-value=12 Score=30.73 Aligned_cols=47 Identities=2% Similarity=0.073 Sum_probs=34.6
Q ss_pred cchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHh
Q psy4325 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262 (306)
Q Consensus 211 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~ 262 (306)
+++.+..+|...|-.. ....++|..+|++...|+.+...-|.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5566666666654322 2456899999999999999998888887764
No 254
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=42.31 E-value=16 Score=23.65 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=14.7
Q ss_pred Ceecccccccccc--CcCCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF--GTKCAGCEMGIP 140 (306)
Q Consensus 116 g~~yC~~cy~~~~--~~~C~~C~~~I~ 140 (306)
|..||..|..+.+ ...|..|..++.
T Consensus 25 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 25 LHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp TEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4455666653321 256888888774
No 255
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=40.99 E-value=8 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=20.7
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987653
No 256
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.44 E-value=35 Score=23.35 Aligned_cols=17 Identities=24% Similarity=0.796 Sum_probs=10.3
Q ss_pred ccccCCCc----------ccccCCCCC
Q psy4325 151 LVYHLNCF----------ACVMCARQL 167 (306)
Q Consensus 151 ~~~H~~CF----------~C~~C~~~l 167 (306)
..||..|. .|..|+..+
T Consensus 42 h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 42 HFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 55676664 466666655
No 257
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=39.88 E-value=3.1 Score=32.28 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=28.4
Q ss_pred CcccCcCCCCCCCcceeeCCeeccccccccccC---cCCCCCCCCCC
Q psy4325 97 CLKCHECGAPLAEKCFARNGLLFCKEDFFKRFG---TKCAGCEMGIP 140 (306)
Q Consensus 97 Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~~~~---~~C~~C~~~I~ 140 (306)
-|.|.+|...|.......=|..||..|..+.+. ..|..|..+|.
T Consensus 31 ~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 356777777665432233477888888866443 47888887763
No 258
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.66 E-value=7 Score=24.82 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHHHHHhhCCCccchhcccccchhHHH
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
..++|..+|+++..|+.+..+-+.|.+
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 357899999999999998876666654
No 259
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=39.37 E-value=8.8 Score=24.53 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=20.8
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 260
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.28 E-value=8.8 Score=27.22 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=22.6
Q ss_pred cCcccCcCCCCCCCccee-eCCeeccccccccc
Q psy4325 96 RCLKCHECGAPLAEKCFA-RNGLLFCKEDFFKR 127 (306)
Q Consensus 96 ~Cf~C~~C~~~l~~~~f~-~~g~~yC~~cy~~~ 127 (306)
.-|.|..|...+.+-... ..|..||..|..+.
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~ 38 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRM 38 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHH
Confidence 347888888877665445 47889998886443
No 261
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=38.93 E-value=17 Score=30.16 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
.+...+|..++++|.-..+-. .-+++|..+|++++.|+....|-+.|..
T Consensus 171 ~~~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 171 NPKQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp CGGGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 345679999999997754322 3577899999999999998877666643
No 262
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.88 E-value=11 Score=25.87 Aligned_cols=21 Identities=19% Similarity=0.646 Sum_probs=15.1
Q ss_pred ccCccccCCCcc--------cccCCCCCC
Q psy4325 148 AQDLVYHLNCFA--------CVMCARQLN 168 (306)
Q Consensus 148 ~~~~~~H~~CF~--------C~~C~~~l~ 168 (306)
.-+..||..|.. |-.|.+.+.
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 467788887763 777877763
No 263
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.93 E-value=7.9 Score=24.87 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=5.6
Q ss_pred Ceecccccccc
Q psy4325 116 GLLFCKEDFFK 126 (306)
Q Consensus 116 g~~yC~~cy~~ 126 (306)
|..||..|..+
T Consensus 39 gH~fC~~Ci~~ 49 (63)
T 2ysj_A 39 GHNFCLKCITQ 49 (63)
T ss_dssp SSEECHHHHHH
T ss_pred CCcchHHHHHH
Confidence 44555555533
No 264
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.81 E-value=25 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=14.5
Q ss_pred ccccccccccCcCCCCCCCCCCC
Q psy4325 119 FCKEDFFKRFGTKCAGCEMGIPP 141 (306)
Q Consensus 119 yC~~cy~~~~~~~C~~C~~~I~~ 141 (306)
+|..|... ...|..|..+|..
T Consensus 38 ~C~~C~~~--~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 38 LCDGCVKY--FQQCPMCRQFVQE 58 (68)
T ss_dssp SCTTHHHH--CSSCTTTCCCCCC
T ss_pred hhHHHHhc--CCCCCCCCcchhc
Confidence 66666653 2578888888854
No 265
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=37.31 E-value=9.8 Score=24.59 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.8
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 266
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=36.88 E-value=21 Score=24.31 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=25.8
Q ss_pred ccCcCCCCCCCcceeeCCee-ccccccccccCcCCCCCCCCCCC
Q psy4325 99 KCHECGAPLAEKCFARNGLL-FCKEDFFKRFGTKCAGCEMGIPP 141 (306)
Q Consensus 99 ~C~~C~~~l~~~~f~~~g~~-yC~~cy~~~~~~~C~~C~~~I~~ 141 (306)
.|..|...+....+.-=|.. +|..|.... ..|..|..+|..
T Consensus 20 ~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCEEEETTCBCCBCHHHHTTC--SBCTTTCCBCCE
T ss_pred EeEEeCcccCcEEEECCCCHHHHHHHHHhc--CcCCCCCchhhC
Confidence 46666555544444434555 788887654 388888888844
No 267
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=36.55 E-value=13 Score=26.10 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=7.1
Q ss_pred cccccCCCCCC
Q psy4325 158 FACVMCARQLN 168 (306)
Q Consensus 158 F~C~~C~~~l~ 168 (306)
|.|..|++.+.
T Consensus 74 ~~C~~C~~~f~ 84 (106)
T 2ee8_A 74 FKCQECGKGFC 84 (106)
T ss_dssp TSCSSSCCCCS
T ss_pred eECCCcCCccc
Confidence 56777776663
No 268
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.22 E-value=16 Score=24.03 Aligned_cols=35 Identities=14% Similarity=0.559 Sum_probs=19.0
Q ss_pred CccccccCcccCcCCC-CCCCcce---eeCCeecccccccc
Q psy4325 90 ERTWHARCLKCHECGA-PLAEKCF---ARNGLLFCKEDFFK 126 (306)
Q Consensus 90 ~~~~H~~Cf~C~~C~~-~l~~~~f---~~~g~~yC~~cy~~ 126 (306)
...+|+ ..|..|+. +|.+..| .=.+.-+|..||..
T Consensus 6 ~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 344554 55666664 3555444 11245678888854
No 269
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.22 E-value=11 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987653
No 270
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.07 E-value=13 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=18.1
Q ss_pred cccCcCCCCCCCc-ce--eeCCeecccccccccc--CcCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEK-CF--ARNGLLFCKEDFFKRF--GTKCAGCEMGI 139 (306)
Q Consensus 98 f~C~~C~~~l~~~-~f--~~~g~~yC~~cy~~~~--~~~C~~C~~~I 139 (306)
..|.+|...+... .+ ..=+..||..|..+.+ ...|..|..+|
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 3556666555332 11 1125555555543321 23444444444
No 271
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=35.40 E-value=21 Score=29.61 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHH
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~ 259 (306)
+...++..++++|.-..+ .+ .-.++|..+|+++..|+...+|-+.|.
T Consensus 170 ~~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIAV--GK----TMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 456799999999977543 21 357789999999999998877766654
No 272
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=35.31 E-value=9 Score=25.81 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.7
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998776
No 273
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=34.60 E-value=12 Score=23.10 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCccchhcccc
Q psy4325 233 VREQLSQDTGLDMRVVQVWFQ 253 (306)
Q Consensus 233 ~r~~La~~~~l~~~~V~~WFq 253 (306)
...++|+.+|++...|..|+.
T Consensus 33 s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 33 TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp CHHHHHHHHTSCHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 366789999999999999875
No 274
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.04 E-value=12 Score=24.53 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=21.0
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988664
No 275
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=33.89 E-value=15 Score=23.56 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=17.7
Q ss_pred HHHHHHhhCCCccchhccc
Q psy4325 234 REQLSQDTGLDMRVVQVWF 252 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WF 252 (306)
..+||+.+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998
No 276
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=33.82 E-value=18 Score=25.11 Aligned_cols=50 Identities=16% Similarity=0.384 Sum_probs=32.7
Q ss_pred CCCCCccCCCeeccceeeeecCccccccCcccCcCCCCCCCcceeeCCeecccc
Q psy4325 69 SIPKCGGCGDLILDRFILKVLERTWHARCLKCHECGAPLAEKCFARNGLLFCKE 122 (306)
Q Consensus 69 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~ 122 (306)
..-.|..|.+.+.+.-.+..-...-|+-||-|+.=. |. .-...+.+||..
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s--Ik--~q~~~~EvyCPS 63 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES--IK--AQGATGEVYCPS 63 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH--HH--HHHSSSCCCCTT
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHH--HH--hcCCCCcEECCC
Confidence 345789999999887666666777888888887311 10 012356777764
No 277
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.47 E-value=13 Score=24.42 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998864
No 278
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.17 E-value=13 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998765
No 279
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=33.14 E-value=13 Score=23.87 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=20.6
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999887654
No 280
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=33.07 E-value=19 Score=24.75 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCCcccchHhHHHHHhccc-----cCCCCCHHHHHHHHHhhCCCccchhcccc
Q psy4325 206 RPRTTITAKQLETLKMAYN-----TSPKPARHVREQLSQDTGLDMRVVQVWFQ 253 (306)
Q Consensus 206 r~rt~~s~~q~~~Le~~F~-----~~~~p~~~~r~~La~~~~l~~~~V~~WFq 253 (306)
.....++..+...|...|. .+.+.+..+...+...+|++..+|..+|.
T Consensus 16 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 16 FQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4456688888888888874 45788988888888888988777766653
No 281
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.84 E-value=13 Score=31.56 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=36.1
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
..+++.++++|...++ .+ .-+++|..+|+++..|++...+-|.|.|.
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5688889988888643 22 36778999999999999988777766554
No 282
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=32.65 E-value=24 Score=22.59 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=18.3
Q ss_pred ccccCCCCCCCCCceeeccCCcccc-cchh
Q psy4325 159 ACVMCARQLNTGDEFYLMEDRKLVC-KPDY 187 (306)
Q Consensus 159 ~C~~C~~~l~~g~~~~~~~~~~~~C-~~c~ 187 (306)
.|..|...+...+ .+..+|+.|| ..|.
T Consensus 9 aC~~C~c~Vs~~e--ai~~dGK~YCSe~Ca 36 (55)
T 1jjd_A 9 ACEPCLCNVDPSK--AIDRNGLYYCSEACA 36 (55)
T ss_dssp SSTTCCCCBCTTT--SEESSSCEESSHHHH
T ss_pred cCCCCeeEechHH--hhhcCCeEEehHHHH
Confidence 4778888886444 3457899999 5453
No 283
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.52 E-value=1e+02 Score=20.64 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=29.6
Q ss_pred CCCCCcccchHhHHHHHhccccCCC---CCHHHHHHHHHhhCCCccch
Q psy4325 204 NKRPRTTITAKQLETLKMAYNTSPK---PARHVREQLSQDTGLDMRVV 248 (306)
Q Consensus 204 ~kr~rt~~s~~q~~~Le~~F~~~~~---p~~~~r~~La~~~~l~~~~V 248 (306)
.+...+.|+..|+..|++.=-.... .+.+++..+| .|++.+..|
T Consensus 22 ~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~Fa-RLdIDP~TI 68 (71)
T 2eo2_A 22 LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFA-RLNIDPATI 68 (71)
T ss_dssp CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHH-HTCCCSTTC
T ss_pred CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhce-ecccCccce
Confidence 3456788999999999986322223 4566777766 467776655
No 284
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.72 E-value=14 Score=24.84 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999988765
No 285
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.17 E-value=19 Score=30.47 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=23.4
Q ss_pred cCCCCCCCCCCCCCceecccCccccCCCc----------ccccCCCCCC
Q psy4325 130 TKCAGCEMGIPPTQVVRRAQDLVYHLNCF----------ACVMCARQLN 168 (306)
Q Consensus 130 ~~C~~C~~~I~~~~~~~~~~~~~~H~~CF----------~C~~C~~~l~ 168 (306)
+.|..|...|..+..= ...+..||..|+ .|..|+..+.
T Consensus 181 ~~C~iC~~iv~~g~~C-~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSLLIQGQSC-ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCSBCSSCEEC-SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CcCcchhhHHhCCccc-CccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4677777766532111 124567888887 5777777763
No 286
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.14 E-value=58 Score=22.74 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=26.4
Q ss_pred CcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 157 CFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 157 CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
=|.|.+|...+. +.+.....|..||..|..+.+..
T Consensus 7 ~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~ 41 (94)
T 2yu4_A 7 GFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIES 41 (94)
T ss_dssp CCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHH
T ss_pred EeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHH
Confidence 478999999985 45554348899999998777654
No 287
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.49 E-value=15 Score=25.62 Aligned_cols=24 Identities=8% Similarity=0.362 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 577999999999999999988654
No 288
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=30.29 E-value=15 Score=24.17 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.8
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999999876
No 289
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.16 E-value=16 Score=23.77 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 290
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.84 E-value=17 Score=23.28 Aligned_cols=9 Identities=44% Similarity=1.187 Sum_probs=3.8
Q ss_pred CCccCCCee
Q psy4325 72 KCGGCGDLI 80 (306)
Q Consensus 72 ~C~~C~~~I 80 (306)
.|..|++..
T Consensus 20 ~C~~C~k~f 28 (73)
T 2ctu_A 20 KCSKCGIIF 28 (73)
T ss_dssp ECSSSCCEE
T ss_pred eCCcccchh
Confidence 344444433
No 291
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.49 E-value=18 Score=24.62 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=21.0
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999999886
No 292
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=29.44 E-value=35 Score=30.55 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=28.1
Q ss_pred cccCcCCCCCCCcceeeCCee-ccccccccccCcCCCCCCCCCCC
Q psy4325 98 LKCHECGAPLAEKCFARNGLL-FCKEDFFKRFGTKCAGCEMGIPP 141 (306)
Q Consensus 98 f~C~~C~~~l~~~~f~~~g~~-yC~~cy~~~~~~~C~~C~~~I~~ 141 (306)
+.|.+|-..+....+.-=|.. +|..|.... ..|..|..+|..
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGC--SBCTTTCCBCCE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcC--CcCCCCCCCccC
Confidence 567777766655444434666 888887654 678888888743
No 293
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.38 E-value=6.3 Score=31.11 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=31.1
Q ss_pred cchHhHHHHHhcc-ccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHH
Q psy4325 211 ITAKQLETLKMAY-NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261 (306)
Q Consensus 211 ~s~~q~~~Le~~F-~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~ 261 (306)
+++.++.+|...| +.-. ..++|..+|+++..|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~s------~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLT------HRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCCS------SCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4555555555532 3222 2368999999999999999888887765
No 294
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=28.21 E-value=80 Score=26.41 Aligned_cols=36 Identities=6% Similarity=0.006 Sum_probs=28.0
Q ss_pred CCCcccccCCCCCCCCCceeeccCCcccccchhHHHhhc
Q psy4325 155 LNCFACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKAK 193 (306)
Q Consensus 155 ~~CF~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~~ 193 (306)
+.-|.|.+|...+. +++.. ..|..||..|..+....
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~-~~gh~f~~~~i~~~~~~ 241 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCIT-PSGITYDRKDIEEHLQR 241 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEEC-SSCCEEETTHHHHHHHH
T ss_pred CcccCCcCcCCHhc--CCeEC-CCCCEECHHHHHHHHHH
Confidence 46788999999995 44544 58999999998777765
No 295
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=27.72 E-value=22 Score=25.97 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=12.5
Q ss_pred CCCCCCccCCCeeccc
Q psy4325 68 ASIPKCGGCGDLILDR 83 (306)
Q Consensus 68 ~~~~~C~~C~~~I~~~ 83 (306)
..-..|..|++.|.-.
T Consensus 23 S~Ra~Ck~C~~kI~Kg 38 (106)
T 2dmj_A 23 SGRASCKKCSESIPKD 38 (106)
T ss_dssp SSCCBCSSSCCBCCTT
T ss_pred CCCCcchhhCCccCCC
Confidence 4566999999999643
No 296
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=27.57 E-value=33 Score=24.63 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=37.0
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHHHhh
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k~~~ 263 (306)
.+++.+..++...|-...+ ....-+++|..+|++...|+......+.+.|+..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4677778888776642211 1124678899999999999998877777766543
No 297
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=27.54 E-value=22 Score=23.31 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.2
Q ss_pred HHHHHHhhCCCccchhccccc
Q psy4325 234 REQLSQDTGLDMRVVQVWFQN 254 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqN 254 (306)
..++|..||++.+.|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999765
No 298
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=27.03 E-value=14 Score=29.02 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=35.4
Q ss_pred hHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 215 QLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 215 q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
-+..-...|.+..| . .....||+..|++...|-..|.|+-.-..
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 35555666888888 5 68899999999999999999999876443
No 299
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=26.64 E-value=19 Score=23.83 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|-.+++.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988753
No 300
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.51 E-value=14 Score=30.26 Aligned_cols=45 Identities=4% Similarity=0.085 Sum_probs=0.0
Q ss_pred ccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHH
Q psy4325 210 TITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKE 259 (306)
Q Consensus 210 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~ 259 (306)
.++..++.+|...|- ......++|..+|++...|+.+...-|.+.
T Consensus 198 ~L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp --------------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 355566666655332 234567899999999999999888776654
No 301
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=26.49 E-value=45 Score=28.31 Aligned_cols=48 Identities=8% Similarity=0.114 Sum_probs=36.9
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhHHH
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k~k 260 (306)
....+|..++++|.-..+-. ...++|..||++++.|+....|-+.|..
T Consensus 194 ~~~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 194 SNMPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CcCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34678999999998774322 3678899999999999998877766643
No 302
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=26.20 E-value=21 Score=24.04 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|.-|..++..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCC
Confidence 678999999999999999865433
No 303
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.06 E-value=57 Score=23.69 Aligned_cols=35 Identities=20% Similarity=0.557 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCceec-ccCccccCCCc------ccccCCCCC
Q psy4325 131 KCAGCEMGIPPTQVVRR-AQDLVYHLNCF------ACVMCARQL 167 (306)
Q Consensus 131 ~C~~C~~~I~~~~~~~~-~~~~~~H~~CF------~C~~C~~~l 167 (306)
.|..|...+. +.++. ..|..|+..|. .|..|...+
T Consensus 24 ~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 24 RCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp SCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred CCCCCChHhh--CccEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 5777766653 23333 56777766664 455666555
No 304
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=25.68 E-value=24 Score=23.26 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=30.7
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchh
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..++...+..+...... ...+||+.+|++...|..|=.+++.
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 35666777766654332 3578999999999999999887653
No 305
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=25.36 E-value=21 Score=23.82 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.8
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987753
No 306
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.32 E-value=32 Score=25.49 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=28.8
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccc
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNR 255 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNr 255 (306)
..++.++...+...+.. .. ...++|+.+|++..+|..|++.-
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 44666666555554432 22 35678999999999999998743
No 307
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.25 E-value=95 Score=22.07 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=28.1
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHH-HHHhhCC-------Cccchhccccc
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQ-LSQDTGL-------DMRVVQVWFQN 254 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~-La~~~~l-------~~~~V~~WFqN 254 (306)
..++.++...+......++..+..+... |.. .|+ +...|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~-~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIR-EGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHH-TSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHH-cCCccccCCcCHHHHHHHHHh
Confidence 4567777777887777777666554433 332 274 67888888764
No 308
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=24.90 E-value=22 Score=24.89 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=29.6
Q ss_pred cccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchh
Q psy4325 209 TTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 209 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+....+..+...-. -...+||+.+|++...|..|..+++-
T Consensus 22 M~i~~~rLk~lR~~~g-------lTq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 22 MRVSYNKLWKLLIDRD-------MKKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp EEEECHHHHHHHHHTT-------CCHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred ccHHHHHHHHHHHHcC-------CCHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 4455555655554322 13578999999999999999998764
No 309
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.84 E-value=23 Score=23.95 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 310
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=24.19 E-value=23 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.5
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||..+|++...|..|-.+++.
T Consensus 30 q~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 467999999999999999888753
No 311
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=23.38 E-value=33 Score=24.72 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=12.3
Q ss_pred Ceecccccccccc-------CcCCCCCCCCC
Q psy4325 116 GLLFCKEDFFKRF-------GTKCAGCEMGI 139 (306)
Q Consensus 116 g~~yC~~cy~~~~-------~~~C~~C~~~I 139 (306)
+..||..|..+-+ ...|..|...+
T Consensus 62 ~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 62 SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 4455655553322 23566666555
No 312
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=23.35 E-value=21 Score=24.69 Aligned_cols=23 Identities=0% Similarity=0.072 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 313
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=22.79 E-value=47 Score=23.51 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=8.3
Q ss_pred cCcCCCCCCCCC
Q psy4325 128 FGTKCAGCEMGI 139 (306)
Q Consensus 128 ~~~~C~~C~~~I 139 (306)
-++.|..|+..|
T Consensus 15 ~~qiCqiCGD~V 26 (93)
T 1weo_A 15 DGQFCEICGDQI 26 (93)
T ss_dssp SSCBCSSSCCBC
T ss_pred CCCccccccCcc
Confidence 346788887766
No 314
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=22.65 E-value=38 Score=22.58 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=5.9
Q ss_pred cCccccCCCc
Q psy4325 149 QDLVYHLNCF 158 (306)
Q Consensus 149 ~~~~~H~~CF 158 (306)
-+..||..|.
T Consensus 39 C~~~yH~~Cl 48 (70)
T 3asl_A 39 CDMAFHIYCL 48 (70)
T ss_dssp TCCEEEGGGS
T ss_pred CCCceecccC
Confidence 3455777664
No 315
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.60 E-value=29 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||+.+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999998765
No 316
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.50 E-value=41 Score=24.33 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=33.6
Q ss_pred CCcccchHhHHHHHhccc-----cCCCCCHHHHHHHHHhhCCCccchhcccc
Q psy4325 207 PRTTITAKQLETLKMAYN-----TSPKPARHVREQLSQDTGLDMRVVQVWFQ 253 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~-----~~~~p~~~~r~~La~~~~l~~~~V~~WFq 253 (306)
....++..+...+...|. .+.+.+..+...+-..+|++..+|..+|.
T Consensus 12 ~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 12 EPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344567777777877763 35678888888877788888877776543
No 317
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.13 E-value=27 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHhhCCCccchhccccc
Q psy4325 234 REQLSQDTGLDMRVVQVWFQN 254 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqN 254 (306)
..+||+.+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999988
No 318
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.13 E-value=26 Score=23.97 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.6
Q ss_pred HHHHHHhhCCCccchhcccccchh
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRRA 257 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR~ 257 (306)
..+||..+|++...|..|..+++.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999988653
No 319
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=21.90 E-value=34 Score=18.25 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.2
Q ss_pred cchhHHHHhhhh
Q psy4325 254 NRRAKEKRLKKD 265 (306)
Q Consensus 254 NrR~k~k~~~~~ 265 (306)
|||.+|+..+..
T Consensus 8 nRRRRWR~Rq~q 19 (26)
T 1etf_B 8 NRRRRWRERQRA 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 888899876654
No 320
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=21.89 E-value=1e+02 Score=23.33 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=32.5
Q ss_pred CCcccchHhHHHHHhccc-----cCCCCCHHHHHHHHHhhCCCcc
Q psy4325 207 PRTTITAKQLETLKMAYN-----TSPKPARHVREQLSQDTGLDMR 246 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~-----~~~~p~~~~r~~La~~~~l~~~ 246 (306)
.+..+|..|+..|+..|. .+.+.+..+...+-+.+|..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 356799999999999984 4678999998888888887654
No 321
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=21.75 E-value=52 Score=21.30 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCCCccCCCeec--cceeeee--cCccccccCcccCcCCCCCCCcceeeCCeecccccccc
Q psy4325 70 IPKCGGCGDLIL--DRFILKV--LERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126 (306)
Q Consensus 70 ~~~C~~C~~~I~--~~~~~~~--~~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~ 126 (306)
...|..|+..-. +..++.- -+..||..|..= +|......-++..||..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p-----~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP-----HIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS-----CCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC-----cccccccCCCCCEECCCCcCc
Confidence 457888887522 2334322 346688665321 222111113577888888644
No 322
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=21.70 E-value=29 Score=25.64 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=11.8
Q ss_pred CCCCCCccCCCeecc
Q psy4325 68 ASIPKCGGCGDLILD 82 (306)
Q Consensus 68 ~~~~~C~~C~~~I~~ 82 (306)
.+-..|.+|++.|..
T Consensus 17 S~Ra~Ck~C~~kI~K 31 (111)
T 3odc_A 17 SNRSTCKGCMEKIEK 31 (111)
T ss_dssp SSCCBCTTTCCBCCT
T ss_pred cCCccccccCCCccC
Confidence 445689999999964
No 323
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=21.62 E-value=42 Score=27.87 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=34.1
Q ss_pred CCcccchHhHHHHHhccccCCCCCHHHHHHHHHhhCCCccchhcccccchhH
Q psy4325 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258 (306)
Q Consensus 207 ~rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~~~l~~~~V~~WFqNrR~k 258 (306)
....+|..++++|.-..+-. ..+++|..||++++.|+.-..|-+.|
T Consensus 172 ~~~~Lt~re~~vl~~~~~G~------s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 172 SNVRLTARETEMLKWTAVGK------TYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp GGCCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34678888888887753322 36788999999999999876665554
No 324
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.62 E-value=28 Score=23.26 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.1
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56899999999999999988764
No 325
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=21.56 E-value=36 Score=22.45 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=21.0
Q ss_pred HHHHHHHhhCCCccchhcccccch
Q psy4325 233 VREQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 233 ~r~~La~~~~l~~~~V~~WFqNrR 256 (306)
....||+.+|++...|..|+.|++
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCC
Confidence 367899999999999999998874
No 326
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=21.38 E-value=45 Score=25.24 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.0
Q ss_pred HHHHHHHhhCCCccchhcccccch
Q psy4325 233 VREQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 233 ~r~~La~~~~l~~~~V~~WFqNrR 256 (306)
-...+|+.+|++..+++.|.-..|
T Consensus 71 ~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 71 FVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHhCCCcccEEEEEeecC
Confidence 467899999999999999987666
No 327
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.27 E-value=27 Score=20.95 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=11.5
Q ss_pred CCCccCCCeecccee
Q psy4325 71 PKCGGCGDLILDRFI 85 (306)
Q Consensus 71 ~~C~~C~~~I~~~~~ 85 (306)
.+|..||++|.-..+
T Consensus 18 RvC~~CgkPi~lsAI 32 (44)
T 2lo3_A 18 RVCEKCGKPLALTAI 32 (44)
T ss_dssp EECTTTCCEEETTTH
T ss_pred hhhcccCCcchHHHH
Confidence 489999999964433
No 328
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=21.05 E-value=23 Score=26.48 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=13.3
Q ss_pred cccccCcCCCCCCCCCCCCC
Q psy4325 124 FFKRFGTKCAGCEMGIPPTQ 143 (306)
Q Consensus 124 y~~~~~~~C~~C~~~I~~~~ 143 (306)
|.+.-...|..|.+.|.-.+
T Consensus 33 yAkS~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDS 52 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTS
T ss_pred EeccCCccCcccCCccCCCC
Confidence 33444467889999986554
No 329
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=20.90 E-value=23 Score=23.55 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=9.5
Q ss_pred Ceecccccccccc
Q psy4325 116 GLLFCKEDFFKRF 128 (306)
Q Consensus 116 g~~yC~~cy~~~~ 128 (306)
|.+||..||.+..
T Consensus 27 gDLYC~rC~rE~H 39 (67)
T 2d8v_A 27 GDLYCARCFREGH 39 (67)
T ss_dssp SEEECSSHHHHHT
T ss_pred CceehHHHHHHHc
Confidence 5689988886644
No 330
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.75 E-value=27 Score=22.90 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=20.7
Q ss_pred HHHHHHhhCCCccchhcccccch
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNRR 256 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNrR 256 (306)
...||+.+|++...|..++.+++
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999999886
No 331
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=20.59 E-value=33 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCceeccc---CccccCCC
Q psy4325 131 KCAGCEMGIPPTQVVRRAQ---DLVYHLNC 157 (306)
Q Consensus 131 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 157 (306)
.|..|++++......|.-. ..=||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 5778888875544433333 33467655
No 332
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=20.58 E-value=72 Score=21.24 Aligned_cols=34 Identities=9% Similarity=0.329 Sum_probs=21.6
Q ss_pred cccccCCCCCCCCCceeeccCCcccccchhHHHhh
Q psy4325 158 FACVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKA 192 (306)
Q Consensus 158 F~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~~~ 192 (306)
..|+.|++.-........ ..+..+|..|......
T Consensus 19 ~~CSFCGK~e~eV~~LIa-GpgvyICdeCI~~c~~ 52 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIA-GPSVYICDECVDLCND 52 (67)
T ss_dssp CCCTTTCCCTTTSSSEEE-CSSCEEEHHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCC-CCCCChhHHHHHHHHH
Confidence 358888887754443332 3456799999765543
No 333
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.57 E-value=42 Score=23.09 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=28.2
Q ss_pred cchHhHHHHHhccc-----cCCCCCHHHHHHHHHhhCCCccchhccc
Q psy4325 211 ITAKQLETLKMAYN-----TSPKPARHVREQLSQDTGLDMRVVQVWF 252 (306)
Q Consensus 211 ~s~~q~~~Le~~F~-----~~~~p~~~~r~~La~~~~l~~~~V~~WF 252 (306)
++..+...+...|. .+.+.+..+...+-..+|++...+..+|
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 45667777777664 2456777777777777788776666444
No 334
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.35 E-value=40 Score=24.27 Aligned_cols=11 Identities=27% Similarity=0.464 Sum_probs=7.4
Q ss_pred Ceecccccccc
Q psy4325 116 GLLFCKEDFFK 126 (306)
Q Consensus 116 g~~yC~~cy~~ 126 (306)
+.-+|..||..
T Consensus 54 d~DLC~~C~~~ 64 (98)
T 2dip_A 54 EYHLCQECFDS 64 (98)
T ss_dssp SCEEEHHHHHT
T ss_pred CccHHHHHHcc
Confidence 35578888754
No 335
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=20.23 E-value=36 Score=22.84 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.1
Q ss_pred HHHHHHhhCCCccchhcccccc
Q psy4325 234 REQLSQDTGLDMRVVQVWFQNR 255 (306)
Q Consensus 234 r~~La~~~~l~~~~V~~WFqNr 255 (306)
..+||+.+|++...|..|..+.
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~~ 46 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALERH 46 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5679999999999999998763
No 336
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.22 E-value=40 Score=22.58 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=25.6
Q ss_pred CCCccCCCeeccceeeeec--CccccccCcccCcCCCCCCCcceeeCCeecccccccc
Q psy4325 71 PKCGGCGDLILDRFILKVL--ERTWHARCLKCHECGAPLAEKCFARNGLLFCKEDFFK 126 (306)
Q Consensus 71 ~~C~~C~~~I~~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~f~~~g~~yC~~cy~~ 126 (306)
..|..|+++-.+..++.-. +..||..|..= ++.. ...+..||..|..+
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~-----~~~~---~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI-----MAAP---PEEMQWFCPKCANK 68 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC-----SSCC---CSSSCCCCTTTHHH
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCCC-----CccC---CCCCCEEChhccCc
Confidence 4688888876544443222 35677665321 1111 12367788777644
No 337
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=20.18 E-value=78 Score=19.78 Aligned_cols=32 Identities=9% Similarity=0.344 Sum_probs=20.4
Q ss_pred cccccCCCCCCCCCceeeccCCcccccchhHHH
Q psy4325 158 FACVMCARQLNTGDEFYLMEDRKLVCKPDYEAA 190 (306)
Q Consensus 158 F~C~~C~~~l~~g~~~~~~~~~~~~C~~c~~~~ 190 (306)
.+|+.|++.-........ ..+...|..|....
T Consensus 12 ~~CSFCGk~~~ev~~LIa-Gpgv~IC~eCi~~~ 43 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIA-GPSVYICDECVDLC 43 (51)
T ss_dssp CBCTTTCCBTTTSSCEEE-CSSCEEEHHHHHHH
T ss_pred cEecCCCCCHHHhcccCC-CCCCEehHHHHHHH
Confidence 368888887754443332 34567898887554
No 338
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=20.17 E-value=56 Score=22.29 Aligned_cols=8 Identities=38% Similarity=1.315 Sum_probs=4.7
Q ss_pred CccccCCC
Q psy4325 150 DLVYHLNC 157 (306)
Q Consensus 150 ~~~~H~~C 157 (306)
+..||..|
T Consensus 48 ~~~yH~~C 55 (77)
T 3shb_A 48 DMAFHIYC 55 (77)
T ss_dssp CCEEETTT
T ss_pred CCccCccc
Confidence 44577666
Done!