RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4325
(306 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 83.7 bits (207), Expect = 2e-21
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+ ++ R T Q L+ + + R R ++++ L R V++WFQNRR K K+
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70
Query: 262 LKKDAGR 268
+ KD +
Sbjct: 71 INKDRAK 77
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 79.4 bits (196), Expect = 7e-20
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+R RT+ T +Q+E L+ + + P RE+L+ L +QVWF NRRAK +R +K
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 265 D 265
Sbjct: 62 L 62
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 78.1 bits (192), Expect = 5e-19
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 199 DGDQPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
G RT T +QL L+ ++ + +R R +++ L+ V++WFQNRR K
Sbjct: 22 PGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 81
Query: 259 EKRLKKD 265
+K+ +++
Sbjct: 82 QKKRERE 88
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 74.1 bits (182), Expect = 6e-18
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
R RT + KQL TL+ Y +P+P ++EQL + TGL RV++VWFQN+R K+K+
Sbjct: 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 73.7 bits (181), Expect = 9e-18
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
K + + Q L+ + T + R++L++ L R V+ WFQNRRAK +R
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 72.9 bits (179), Expect = 2e-17
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
R T T Q L+ ++ + R R +++ L R +++WFQNRR K K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 73.0 bits (179), Expect = 2e-17
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+R RTT +A QL+ L+ A+ + P + RE+L+Q T L +QVWFQNRRA+ ++
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
Query: 265 D 265
Sbjct: 63 S 63
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 72.6 bits (178), Expect = 2e-17
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
++ R + QL L+ Y + + R ++S T L R + +WFQNRR KEK+
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 71.5 bits (175), Expect = 6e-17
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+R RT T++QL+ L+ + + P RE+++ T L V+VWF+NRRAK ++
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 71.5 bits (175), Expect = 6e-17
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
++PRT T QL L+ + + R + S L V++WFQNRRAK KRL
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 71.9 bits (176), Expect = 6e-17
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ R + Q+ L+ + + RE L+ L V++WFQN R K KR K
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 265 D 265
D
Sbjct: 63 D 63
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 71.5 bits (175), Expect = 6e-17
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
+R RTT T+ Q+ L+ + LS L V++WF+NRR + K
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 265 D 265
Sbjct: 62 Q 62
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 71.1 bits (174), Expect = 7e-17
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
R RT T QL L+ + +R R +L+ L ++VWFQNRR K+KR
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 70.3 bits (172), Expect = 1e-16
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263
+ RTTI+ + L+ + KP+ +++++ L+ VV+VWF NRR +EKR+K
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 69.9 bits (171), Expect = 2e-16
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
RPRT +++QL LK +N + R+QLS + GL+ +++WFQN RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 68.7 bits (168), Expect = 5e-16
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 207 PRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 256
PR T Q TL + + +P++ ++ +SQ GL++ V +F N R
Sbjct: 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 69.3 bits (169), Expect = 5e-16
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 202 QPNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
Q KR RT+I + +L+ + PKP+ ++ GL+ VV+VWF NRR K KR
Sbjct: 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 68.8 bits (168), Expect = 7e-16
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 205 KRPRTTITAKQLETLK---MAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
+R R + E L ++ ++P P+ +E+L++ G+ + V WF N+R + K+
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 262 LKKD 265
Sbjct: 62 NIGK 65
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 68.2 bits (166), Expect = 1e-15
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 205 KRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKK 264
++ R T Q L+ + + RE L+ L V++WFQN R K KR +
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69
Query: 265 DAGRTR 270
+ G
Sbjct: 70 EKGYEG 75
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 67.2 bits (164), Expect = 2e-15
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260
+++I+ + L+ + +E++++ G+ V+VWF N+R + K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 65.9 bits (161), Expect = 5e-15
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 212 TAKQLETLKMAYNT-SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 261
TA+ L+ + + P E LS+ D+R +Q WF+ RR +EK
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 67.0 bits (163), Expect = 5e-15
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 206 RPRTTITAKQLETLKMAYNTSPKPARHVREQL---------------SQDTGLDMRVVQV 250
R T + L ++ +N + P RE++ S + V
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 251 WFQNRRAKEKRLKKDAG 267
WF NRR + KR A
Sbjct: 62 WFANRRKEIKRRANIAA 78
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 65.5 bits (159), Expect = 1e-14
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 200 GDQPNKRPRTTITAKQLETLKMAY-NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
R RT I+ + L L+ + P + LS L + +FQN+R
Sbjct: 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62
Query: 259 EKRLKKDAG 267
K +G
Sbjct: 63 VKHSGPSSG 71
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 64.8 bits (158), Expect = 2e-14
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 204 NKRPRTTITAKQLETLKMAYNTS---PKPARHVREQLSQDTGLDMRVVQVWFQNRRAK 258
K R + ++ P P ++Q++ T L + V WF N R +
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 65.0 bits (158), Expect = 2e-14
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 194 DGNCLDGDQPNKRPRTTITAKQLETLKM----AYNTSPKPARHVREQLSQDTGLDMRVVQ 249
N KR RT TA+Q E + K EQ +TG+ +V++
Sbjct: 7 GSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66
Query: 250 VWFQNRRAKEKR 261
+W N +
Sbjct: 67 IWMHNNKNSGPS 78
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 63.4 bits (154), Expect = 5e-14
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
RT+I L+ ++ + KP +++ ++ V++VWF NRR KEKR+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 63.1 bits (153), Expect = 9e-14
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 205 KRPRTTITAKQLETLKMAY-NTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263
T+T Q+E L+ + + P ++ + GL Q WF+ R A+ +R +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 264 K 264
Sbjct: 62 G 62
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 61.7 bits (150), Expect = 2e-13
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 212 TAKQLETLKMAYN---TSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
T + + L+ + +P E L ++T L ++ W NRR KEK +
Sbjct: 6 TKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 60.2 bits (146), Expect = 7e-13
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 206 RPRTTITAKQLETLKMAYNT-SPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEK 260
+ + +TL+ + + + P + LS+ +R +Q WF++RR ++K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 54.7 bits (131), Expect = 1e-10
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 203 PNKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
P K T A+QL L+ ++ S +L T L R + WF ++ +
Sbjct: 5 PQKFKEKT--AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 62
Query: 263 KK 264
++
Sbjct: 63 EE 64
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 54.0 bits (129), Expect = 2e-10
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 208 RTTITAKQLETLKMAYNTSPKPARHVREQLSQDT---------------------GLDMR 246
R + L AY P++ RE L ++ +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 247 VVQVWFQNRRAKEKRLKK 264
V WF NRR +E K
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 52.5 bits (126), Expect = 3e-10
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARC 97
S+ CGGC I DR+ LK +++ WH C
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDC 30
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 51.6 bits (124), Expect = 5e-10
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 69 SIPKCGGCGDLILDRFILKVLERTWHARCL 98
S +C GCG I DRF+L ++ WH+RCL
Sbjct: 1 SWKRCAGCGGKIADRFLLYAMDSYWHSRCL 30
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 31
Score = 51.6 bits (124), Expect = 5e-10
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 132 CAGCEMGIPPTQVVRRAQDLVYHLNCF 158
C+ C IP +++V RAQ VYHL CF
Sbjct: 5 CSACGQSIPASELVMRAQGNVYHLKCF 31
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 49.3 bits (117), Expect = 8e-09
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263
+ T +QL LK + R ++L Q TGL + WF + R K
Sbjct: 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH-- 60
Query: 264 KDAGRTRWSQYFRS 277
G+ +W + S
Sbjct: 61 ---GQLKWFRDNAS 71
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 36.5 bits (85), Expect = 1e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 122 EDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCF 158
+DF F KC GC + + A D V+H CF
Sbjct: 1 KDFLAMFSPKCGGCNRPVLENYLS--AMDTVWHPECF 35
Score = 32.3 bits (74), Expect = 0.003
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 71 PKCGGCGDLILDRFILKVLERTWHARC 97
PKCGGC +L+ ++ ++ WH C
Sbjct: 9 PKCGGCNRPVLENYL-SAMDTVWHPEC 34
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 35.5 bits (82), Expect = 4e-04
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 99 KCHECGAPLAE-KCFARNGLLFCKEDFFKRFGTKCAGCEMG 138
+C +CG L ++G ++CK + K FG K G G
Sbjct: 1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG 41
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 34
Score = 34.4 bits (79), Expect = 7e-04
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 99 KCHECGAPLAE---KCFARNGLLFCKEDFFKRFG 129
KC C A L + + ++G++ C+ D+ + FG
Sbjct: 1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 34
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 32.1 bits (73), Expect = 0.004
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 67 IASIPKCGGCGDLILDRFILKVLERTWHARC 97
+A++ KC C ILDR IL+ + + +H C
Sbjct: 5 VATLEKCATCSQPILDR-ILRAMGKAYHPGC 34
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 31.3 bits (71), Expect = 0.009
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 99 KCHECGAPLAEKCFARNGLLFCKEDFFKRFG 129
KC C L + +++G+ +C+ D+ +FG
Sbjct: 1 KCQTCSVILTGEYISKDGVPYCESDYHAQFG 31
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 30.9 bits (70), Expect = 0.013
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWHARC 97
P C C +I F++ L ++WH
Sbjct: 18 TPMCAHCNQVIRGPFLV-ALGKSWHPEE 44
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 30.4 bits (69), Expect = 0.017
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 100 CHECGAPLAEKCF-ARNGLLFCKEDFFKRF 128
C +C E F G +C+ DF F
Sbjct: 3 CAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.5 bits (66), Expect = 0.046
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 66 PIASIPKCGGCGDLILDRFILKVLERTWHARCL 98
I C GC + I L L++ WH C
Sbjct: 4 KIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCF 36
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 29.0 bits (65), Expect = 0.056
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 70 IPKCGGCGDLILDRFILKVLERTWH 94
+P CG C I R ++ + + WH
Sbjct: 5 VPICGACRRPIEGR-VVNAMGKQWH 28
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.9 bits (62), Expect = 0.13
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 73 CGGCGDLILDRFILKVLERTWHARCL 98
C CG+ I+ R I K + +WH C
Sbjct: 1 CHQCGEFIIGRVI-KAMNNSWHPECF 25
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 28.2 bits (63), Expect = 0.15
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 123 DFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNC 157
D+ + +GT+C C+ I V A YH +C
Sbjct: 9 DYQRLYGTRCFSCDQFI--EGEVVSALGKTYHPDC 41
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 25.9 bits (57), Expect = 0.75
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 126 KRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNCF 158
+ KC GC I + V+H +CF
Sbjct: 5 REDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 34
Score = 25.5 bits (56), Expect = 0.86
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 122 EDFFKRFGTKCAGCEMGIPPTQVVRRAQDLVYHLNC 157
+D++ +FG C GC + + T A + YH C
Sbjct: 1 KDYWGKFGEFCHGCSLLM--TGPFMVAGEFKYHPEC 34
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 33
Score = 25.2 bits (55), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 98 LKCHECGAPLAE---KCFARNGLLFCKEDFFK 126
L C CG L E + + + G C+ D+ +
Sbjct: 1 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 32
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 28.0 bits (62), Expect = 1.5
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 252 FQNRRAKEKRLKKDAGRTRWSQYFRSMKGGTSPKDELKIDLDSNFSHS 299
FQ R +E ++ +W + + + + +D F
Sbjct: 13 FQKHREQELEERRK--LYQWGSWKEGLILNVAGSKLTDLPVDERFLED 58
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 93
Score = 26.6 bits (59), Expect = 1.5
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 205 KRPRTT-ITAKQLETLKMAYNTSPK-PARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
+ P + +E ++ SPK +++ + Q +RV+ + N K KR+
Sbjct: 7 QAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQA--FGVRVIGISTMNVPGKRKRV 64
Query: 263 KKDAGRT 269
+ G+
Sbjct: 65 GRFIGQR 71
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
C-terminal domain {Deinococcus radiodurans [TaxId:
1299]}
Length = 157
Score = 27.4 bits (60), Expect = 1.7
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 79 LILDRFILKVLERT-WHARCLKCHECGAPLAEKCFARNGLLFCKE 122
+ K+L + +C CGAP E G L C +
Sbjct: 51 WVALVMSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSK 95
>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 24.8 bits (54), Expect = 2.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 158 FACVMCARQLNTGDEFYLMEDRKLVCKPDY 187
FAC+ C + GD + L++ L C +
Sbjct: 1 FACMSCKVIIEDGDAYALVQHATLYCGKCH 30
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 24.3 bits (53), Expect = 2.2
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 100 CHECGAPLAEKCF-ARNGLLFCKEDFFKRFG 129
C +C + F +G FC+ + R G
Sbjct: 2 CGDCFTSFSTGSFFELDGRPFCELHYHHRRG 32
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 27.5 bits (61), Expect = 2.2
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 204 NKRPRTTITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLK 263
+ P I A+ K N SP+ + V +++R + W + + LK
Sbjct: 566 RRFPDVLIQARPSHFWKAVLNDSPEAVKAVMNLSHSHNFINIRDMMRWV-LLPSLQPSLK 624
Query: 264 KDAGRTRW 271
W
Sbjct: 625 LVLEEEAW 632
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 24.5 bits (53), Expect = 2.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 71 PKCGGCGDLILDRFILKVLERTWHARC 97
P C CG ++ + L++ WH C
Sbjct: 3 PNCARCGKIVYPTEKVNCLDKFWHKAC 29
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein
MecI {Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 25.7 bits (56), Expect = 4.5
Identities = 4/39 (10%), Positives = 17/39 (43%)
Query: 211 ITAKQLETLKMAYNTSPKPARHVREQLSQDTGLDMRVVQ 249
I++ + E + + + A ++ E++ + ++
Sbjct: 5 ISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIR 43
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and
3 {Salmonella typhimurium [TaxId: 90371]}
Length = 102
Score = 24.9 bits (54), Expect = 5.8
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 225 TSPKPARHVREQLSQ--DTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRS 277
TSP AR +RE+L L R K++ R W ++F +
Sbjct: 18 TSPVLARLLREKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVN 72
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 23.3 bits (50), Expect = 6.0
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 100 CHECGAP-LAEKCFARNGLLFCKEDFFKRFG 129
C +C P L + + R GL +C+ + + FG
Sbjct: 3 CAKCEKPFLGHRHYERKGLAYCETHYNQLFG 33
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 24.7 bits (54), Expect = 7.1
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 205 KRPRTTITA-KQLETLKMAYNTSPK-PARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRL 262
P + A K + PK ++ + ++VV+V + R K+KRL
Sbjct: 7 LAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETA--FKVKVVKVNTLHVRGKKKRL 64
Query: 263 KKDAGRT 269
+ G+
Sbjct: 65 GRYLGKR 71
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.8 bits (49), Expect = 8.0
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 71 PKCGGCGDLILDRFILKVLERTWHARCL 98
KC C + + L + WH CL
Sbjct: 3 SKCPKCDKTVYFAEKVSSLGKDWHKFCL 30
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 22.8 bits (49), Expect = 9.8
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 131 KCAGCEMGIPPTQVVRRAQDLVYHLNCF 158
C C+ + P + + A V+H++CF
Sbjct: 9 TCVECQKTVYPMERLL-ANQQVFHISCF 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.428
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,464
Number of extensions: 55312
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 75
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)