BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4327
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1
SV=3
Length = 124
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 82/109 (75%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRLY +AIFTGFKRG R Q +TSLL +E KEDA FY GKR V+LYKA K LK
Sbjct: 16 GRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGH 75
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
+R RAIWGK+TRPHG++G+VRAKFH N+P +G+++R++LYPSNI
Sbjct: 76 TVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
>sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1
Length = 110
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+++AIF G+KRG RNQ +T+LL IE +++ FY+GKRC ++YKAK + P
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K ++ R IWGKVTR HG+SG VRAKF NLPA +G ++R+MLYPS I
Sbjct: 63 K-PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3
SV=1
Length = 110
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+++AIF G+KRG RNQ +T+LL IE +++ FY+GKRC ++YKAK + P
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K ++ R IWGKVTR HG+SG VRAKF NLPA +G ++R+MLYPS I
Sbjct: 63 K-PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2
Length = 110
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+++AIF G+KRG RNQ +T+LL IE +++ FY+GKRC ++YKAK + P
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K ++ R IWGKVTR HG+SG VRAKF NLPA +G ++R+MLYPS I
Sbjct: 63 K-PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC
PE=3 SV=1
Length = 112
Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY R G+KR + NQ+PNTSL+ IE NT+E+ +Y GKR ++YKAKTK K
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTK------K 64
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
S R IWGKVTRPHG+SG VRAKF NLP MG +VR+ +YPSNI
Sbjct: 65 NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=2 SV=1
Length = 110
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+++AIF G+KRG RNQ +T+LL IE +++ FY+GKRC ++YKAK + P
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K ++ R IWGK+TR HG+SG VRAKF NLPA +G ++R+MLYPS I
Sbjct: 63 K-PNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1
Length = 110
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+ +AIF G+KRG RNQ +T+LL IE +++ FY+GKRC ++YKAK + P
Sbjct: 3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K ++ R IWGKVTR HG+SG VRAKF NLPA +G ++R+MLYPS I
Sbjct: 63 K-PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2
Length = 110
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+ +AIF G+KRG RNQ +T+LL IE +++ FY+GKRC ++YKAK + P
Sbjct: 3 GRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K ++ R IWGKVTR HG+SG VRAKF NLPA +G ++R+MLYPS I
Sbjct: 63 K-PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB
PE=3 SV=1
Length = 111
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY R G+KR + NQ+PNTSL+ IE NT+E+ +Y GKR ++YKAKTK K
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTK------K 63
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
S R IWGKVTRPHG+SG VR+KF NLP MG +VR+ +YPSNI
Sbjct: 64 NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA
PE=3 SV=1
Length = 112
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY R G+KR + NQ+PNTSL+ +E NT E+ +Y GKR ++YKAKTK K
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTK------K 64
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
S R IWGKVTRPHG+SG VRAKF NLP MG +VR+ +YPSNI
Sbjct: 65 NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2
Length = 110
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+ +A F G+KRG RNQ +T+LL IE +++ FY GKRC ++YKAK + P
Sbjct: 3 GRLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K +R R IWGKVTR HG+SG VRAKF NLPA +G ++R+MLYPS I
Sbjct: 63 K-PNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD
PE=3 SV=2
Length = 111
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY R G+KR + NQ+PNTSL+ IE NT+E+ +Y GKR ++YKAKTK K
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTK------K 63
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
S R IWGKVTRPHG+SG VR+KF NLP MG +VR+ +YPSNI
Sbjct: 64 NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3
SV=1
Length = 110
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 79 GRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHS 138
GRL+ +AIF G+KRG RNQ +T+LL +E ++ + FY+GKRC ++YKAK + P
Sbjct: 3 GRLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGG 62
Query: 139 KRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
K ++ R IWGKVTR HG+SG VRAKF NLP +G ++R+MLYPS +
Sbjct: 63 K-PNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
>sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33a PE=3 SV=2
Length = 108
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY +A F+R + HP TSL+ IE C++KE+A+FY+GKR F+YK+ KP
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSN----KP--V 60
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
R S++R IWG V+RPHG+SG VRA+F NLP G +R+MLYPSN+
Sbjct: 61 RGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
>sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33b PE=1 SV=1
Length = 108
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY +A F+R + HP TS++ IE C++KE+A+FY+GKR ++YK+ +
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSK------AV 60
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
R S++R IWG + RPHG+SG+VRA+F NLPA G +R+MLYPSNI
Sbjct: 61 RGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
>sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33A PE=1 SV=3
Length = 107
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY + ++R +R +PN SL+ IE T +DA+FY+GKR ++Y+A +KE+
Sbjct: 6 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRA-SKEV----- 59
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
R S++R +WGKVTR HG+SG VRA F NLPA G VRI LYPSNI
Sbjct: 60 RGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2
Length = 107
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 6/108 (5%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RLY + ++R +R +PN SL+ IE T ++A+FY+GKR ++Y+A +KE+
Sbjct: 6 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRA-SKEV----- 59
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
R S++R +WGKVTR HG+SG VRA F NLPA G VRI LYPSNI
Sbjct: 60 RGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a
PE=3 SV=1
Length = 105
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
++Y++ + G++R Q Q+PN SL+ IE ++ED+ FY+GK+ + K P
Sbjct: 3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGH 62
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187
+ S WGK+ + HGSSG V+A+F RNLP MG VR+MLYPSNI
Sbjct: 63 KIS-----WGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105
>sp|P0DJ22|RL35A_TETTS 60S ribosomal protein L35a OS=Tetrahymena thermophila (strain
SB210) GN=RPL35A PE=1 SV=1
Length = 113
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 7/106 (6%)
Query: 80 RLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSK 139
RL+ +A FTGF+R + Q+ N +LL ++ NTKED FY GKR V++YK + K
Sbjct: 13 RLWVKAAFTGFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKN------ 66
Query: 140 RKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPS 185
S R IWG++ + HG++G A+F NLP +G +R+MLYP+
Sbjct: 67 -GSNYRTIWGRIGKAHGNNGVAVARFAHNLPPQAIGSVLRVMLYPN 111
>sp|Q9V1P2|RL35A_PYRAB 50S ribosomal protein L35Ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl35ae PE=3 SV=1
Length = 87
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 84 RAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSR 143
+ + ++R + NQH N ++ N++E+A +G R V K LK
Sbjct: 4 KGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIG-RLVIWKSPSGKLLK-------- 54
Query: 144 LRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIM 181
GK+ R HG+ G+VRA+F + LP +G V I+
Sbjct: 55 -----GKIVRVHGTKGAVRARFEKGLPGQALGDYVEII 87
>sp|P20299|RL35A_PYRWO 50S ribosomal protein L35Ae OS=Pyrococcus woesei GN=rpl35ae PE=3
SV=1
Length = 87
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 84 RAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSR 143
+ + ++R + NQH N ++ N++E+A +G R V K LK
Sbjct: 4 KGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIG-RLVLWKSPSGKILK-------- 54
Query: 144 LRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIM 181
GK+ R HG+ G+VRA+F + LP +G V I+
Sbjct: 55 -----GKIVRVHGTKGAVRARFEKGLPGQALGDYVEIV 87
>sp|Q8TZV6|RL35A_PYRFU 50S ribosomal protein L35Ae OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl35ae PE=1 SV=1
Length = 87
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 84 RAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSR 143
+ + ++R + NQH N ++ N++E+A +G R V K LK
Sbjct: 4 KGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIG-RLVLWKSPSGKILK-------- 54
Query: 144 LRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIM 181
GK+ R HG+ G+VRA+F + LP +G V I+
Sbjct: 55 -----GKIVRVHGTKGAVRARFEKGLPGQALGDYVEIV 87
>sp|O74099|RL35A_PYRHO 50S ribosomal protein L35Ae OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl35ae PE=3 SV=1
Length = 87
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 84 RAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSR 143
+ + ++R + NQH N ++ N++E+A +G R V K LK
Sbjct: 4 KGVVLSYRRSKENQHTNVMIIKPLDINSREEASKLIG-RLVVWKSPSGKVLK-------- 54
Query: 144 LRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIM 181
GK+ R HG+ G+VRA+F + LP +G V I+
Sbjct: 55 -----GKIVRVHGTRGAVRARFEKGLPGQALGDYVEII 87
>sp|Q8TYY6|RL35A_METKA 50S ribosomal protein L35Ae OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl35ae PE=3 SV=1
Length = 90
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 84 RAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSR 143
R + ++ G+ Q P ++ E ++ +A +GK ++ + K ++
Sbjct: 6 RGVIVNYRMGRHTQDPRQCIIEFEGVESRSEAAQLIGKEVIWKHPETGKVIR-------- 57
Query: 144 LRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKV 178
GKV HG++G+VR +F R LP +G +V
Sbjct: 58 -----GKVVDTHGNNGAVRVRFERGLPGQALGTEV 87
>sp|P15923|TFE2_HUMAN Transcription factor E2-alpha OS=Homo sapiens GN=TCF3 PE=1 SV=1
Length = 654
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 12 RVSVMAAATEVKKDEKKKVAKPKTPKTGEEKKVAKKATATTPSKDAKATD----TKKVKK 67
R AAA+E+K++EK+ EE+K KA S D D +K ++
Sbjct: 487 RAGATAAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSPDEDEDDLLPPEQKAER 546
Query: 68 TKKHKRLRLRHGRLYARAIFTGFKRGQR-------NQHPNTSLLAIEK 108
K+ + RL R I FK R ++ P T LL + +
Sbjct: 547 EKERRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQ 594
>sp|P25979|UBF1A_XENLA Nucleolar transcription factor 1-A OS=Xenopus laevis GN=ubtf-a PE=2
SV=1
Length = 677
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 32 KPKTPKT---GEEKKVAKKATATTPSKDAKATDTKKVKKTKKHKRLRLRHGRLYARAIFT 88
KPKTP+ E+KV K A +KD K K+ + KRL+ H L R +
Sbjct: 198 KPKTPQQLWYNHERKVYLKLHADASTKDVKDALGKQWSQLTDKKRLKWIHKALEQRKQYE 257
Query: 89 GFKRGQRNQHPNTSL 103
G R +HP ++
Sbjct: 258 GIMREYMQKHPELNI 272
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B OS=Xenopus laevis GN=ubtf-b PE=2
SV=1
Length = 701
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 32 KPKTPKT---GEEKKVAKKATATTPSKDAKATDTKKVKKTKKHKRLRLRHGRLYARAIFT 88
KPKTP+ E+KV K A +KD K K+ + KRL+ H L R +
Sbjct: 198 KPKTPQQLWYNHERKVYLKLHADASTKDIKDALGKQWSQLPDKKRLKWIHKALEQRKQYE 257
Query: 89 GFKRGQRNQHPNTSL 103
G R +HP ++
Sbjct: 258 GVMREYMQKHPELNI 272
>sp|P21677|TFE2_RAT Transcription factor E2-alpha OS=Rattus norvegicus GN=Tcf3 PE=1
SV=1
Length = 649
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 12 RVSVMAAATEVKKDEKKKVAKPKTPKTGEEKKVAK-KATATTPSKDAK--ATDTKKVKKT 68
R V A A+E+K++EK+ E+KK K T T+P +D +K ++
Sbjct: 483 RAGVTAGASEIKREEKEDEEVTSVADAEEDKKDLKVPRTRTSPDEDEDDLLPPEQKAERE 542
Query: 69 KKHKRLRLRHGRLYARAIFTGFKRGQR-------NQHPNTSLLAIEK 108
K+ + RL R I FK R + P T LL + +
Sbjct: 543 KERRVANNARERLRVRDINEAFKELGRMCQLHLSTEKPQTKLLILHQ 589
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,017,653
Number of Sequences: 539616
Number of extensions: 2418674
Number of successful extensions: 14961
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 12977
Number of HSP's gapped (non-prelim): 1779
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)