Query psy4327
Match_columns 187
No_of_seqs 110 out of 225
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 22:47:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_j 60S ribosomal protein L 100.0 2.7E-60 9.2E-65 368.6 8.2 108 74-187 4-111 (111)
2 3izc_j 60S ribosomal protein R 100.0 1.3E-60 4.6E-65 368.3 5.0 105 77-187 3-107 (107)
3 4a18_H RPL35A; ribosome, eukar 100.0 7.9E-59 2.7E-63 361.3 10.1 104 77-187 10-113 (113)
4 1sqr_A 50S ribosomal protein L 100.0 1.4E-50 4.6E-55 307.2 9.3 88 82-183 2-89 (95)
5 3j21_c 50S ribosomal protein L 100.0 1E-47 3.5E-52 287.5 9.9 84 83-180 3-86 (87)
6 1wb1_A Translation elongation 88.2 0.13 4.3E-06 45.9 0.9 68 97-185 413-480 (482)
7 3h9n_A Ribosome maturation fac 82.3 1.8 6.1E-05 34.3 4.8 41 84-130 46-86 (177)
8 2f1l_A 16S rRNA processing pro 79.6 3 0.0001 33.6 5.3 39 85-129 65-103 (187)
9 2dyi_A Probable 16S rRNA-proce 79.3 1.1 3.8E-05 35.1 2.7 38 86-129 42-79 (162)
10 2qgg_A 16S rRNA-processing pro 78.8 1.2 3.9E-05 35.5 2.7 39 85-129 56-94 (182)
11 2f1l_A 16S rRNA processing pro 61.8 6.8 0.00023 31.4 3.6 27 145-171 20-46 (187)
12 3kdf_A Replication protein A 1 58.0 31 0.0011 26.0 6.5 33 147-180 27-69 (121)
13 1xk5_A Snurportin-1; protein-R 56.3 9.3 0.00032 31.8 3.6 35 119-173 30-64 (204)
14 4gop_A Putative uncharacterize 51.2 45 0.0015 24.7 6.4 34 147-181 23-64 (114)
15 2bjq_A MFP2A; motility, nemato 41.5 41 0.0014 30.4 5.5 49 120-185 31-83 (345)
16 3kxt_A Chromatin protein CREN7 31.4 21 0.00071 24.8 1.6 19 150-168 22-40 (56)
17 3gjx_B Snurportin-1; transport 29.6 41 0.0014 30.5 3.6 60 95-174 100-166 (365)
No 1
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=100.00 E-value=2.7e-60 Score=368.59 Aligned_cols=108 Identities=56% Similarity=0.923 Sum_probs=96.7
Q ss_pred cccCCCceEEEEEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEeccccccCCCCCCCCceeeEEeEEEc
Q psy4327 74 LRLRHGRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTR 153 (187)
Q Consensus 74 ~~~~~~RLyvKgvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR 153 (187)
...+++|||+||+|+|||||++||||||||||||||++++||+|||||||+||||+++. .+++++|+|||||||
T Consensus 4 ~~~~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~------~~g~k~R~iwGKVtR 77 (111)
T 3iz5_j 4 RQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTK------SNDSTIRCIWGKVTR 77 (111)
T ss_dssp SCCCCCCCCCCEEEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSS------SCCCCSCCEECEEEE
T ss_pred ccCCCceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCcEEEEEEecccc------CCCceEEEEEEEEEe
Confidence 34678899999999999999999999999999999999999999999999999999876 367999999999999
Q ss_pred ccCCCceEEEEeCCCCCccCCCCeEEEEEeecCC
Q psy4327 154 PHGSSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187 (187)
Q Consensus 154 ~HGNSGvVRAKFk~NLPpqAiG~rVRVmLYPS~I 187 (187)
+|||||+|||+|++||||+|||++||||||||+|
T Consensus 78 ~HGnsGvVrAkF~~nLP~kA~G~~VrVmLyps~i 111 (111)
T 3iz5_j 78 PHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111 (111)
T ss_dssp ESSSSSCEEEECSSCCSTTCCSSCBCC-------
T ss_pred eeCCCCEEEEEeCCCCChHHcCCEEEEEEecCCC
Confidence 9999999999999999999999999999999997
No 2
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=100.00 E-value=1.3e-60 Score=368.35 Aligned_cols=105 Identities=50% Similarity=0.885 Sum_probs=95.1
Q ss_pred CCCceEEEEEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEeccccccCCCCCCCCceeeEEeEEEcccC
Q psy4327 77 RHGRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHG 156 (187)
Q Consensus 77 ~~~RLyvKgvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HG 156 (187)
+++|||+||+|+|||||++||||||||||||||++++||+|||||||+||||++++ .+++++|+|||||||+||
T Consensus 3 ~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~------~~g~k~RviwGKVtR~HG 76 (107)
T 3izc_j 3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKE------VRGSKIRVMWGKVTRTHG 76 (107)
T ss_dssp SSCCCCCCEEEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSS------SCCCCSCCCCCCEEECSS
T ss_pred CCceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcc------cCCceEEEEEEEEEeeeC
Confidence 57899999999999999999999999999999999999999999999999999876 368999999999999999
Q ss_pred CCceEEEEeCCCCCccCCCCeEEEEEeecCC
Q psy4327 157 SSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187 (187)
Q Consensus 157 NSGvVRAKFk~NLPpqAiG~rVRVmLYPS~I 187 (187)
|||+|||+|++||||||||++||||||||+|
T Consensus 77 nsGvVrAkF~~nLP~kA~G~~VrVmLyps~i 107 (107)
T 3izc_j 77 NSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107 (107)
T ss_dssp SSSCEEECCCSCCSTTCCSSCBCC-------
T ss_pred CCCeEEEEeCCCCChHHcCCeEEEEEecCCC
Confidence 9999999999999999999999999999997
No 3
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=100.00 E-value=7.9e-59 Score=361.34 Aligned_cols=104 Identities=43% Similarity=0.848 Sum_probs=100.2
Q ss_pred CCCceEEEEEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEeccccccCCCCCCCCceeeEEeEEEcccC
Q psy4327 77 RHGRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHG 156 (187)
Q Consensus 77 ~~~RLyvKgvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HG 156 (187)
+++|||+||+|+|||||++||||||||||||||++++||+|||||||+||||++++ .++++|+|||||||+||
T Consensus 10 ~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~-------~g~k~RviwGKVtR~HG 82 (113)
T 4a18_H 10 APTRLWVKAAFTGFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKK-------NGSNYRTIWGRIGKAHG 82 (113)
T ss_dssp CSCCCCEEEEEEEEEEETTEEEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEE-------TTEEEEEEEEEEEEEET
T ss_pred ccceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCC-------CCCeEEEEEEEEEeeeC
Confidence 67899999999999999999999999999999999999999999999999999874 46899999999999999
Q ss_pred CCceEEEEeCCCCCccCCCCeEEEEEeecCC
Q psy4327 157 SSGSVRAKFHRNLPAIYMGRKVRIMLYPSNI 187 (187)
Q Consensus 157 NSGvVRAKFk~NLPpqAiG~rVRVmLYPS~I 187 (187)
|||+|||+|++||||||||++||||||||+.
T Consensus 83 nsGvVrAkF~~nLP~kA~G~~VrVmLyPs~~ 113 (113)
T 4a18_H 83 NNGVAVARFAHNLPPQAIGSVLRVMLYPNRA 113 (113)
T ss_dssp TTTEEEEEESSCCCGGGGGSEEEEECCCCCC
T ss_pred CCCeEEEEeCCCCChHHcCCeEEEEEecCCC
Confidence 9999999999999999999999999999973
No 4
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=100.00 E-value=1.4e-50 Score=307.23 Aligned_cols=88 Identities=28% Similarity=0.548 Sum_probs=84.3
Q ss_pred EEEEEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEeccccccCCCCCCCCceeeEEeEEEcccCCCceE
Q psy4327 82 YARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHGSSGSV 161 (187)
Q Consensus 82 yvKgvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HGNSGvV 161 (187)
|+||+|+|||||++||+|||||||||||++++||+|||||||+|||+++ |+|||||||+|||||+|
T Consensus 2 ~~Kgv~lgYkRg~~nQ~~~~aLlkIegV~~k~~a~fYlGKrvayvyka~--------------rviwGKVtR~HGnsGvV 67 (95)
T 1sqr_A 2 RIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSG--------------KILKGKIVRVHGTKGAV 67 (95)
T ss_dssp CCEEEEEEEECCSSSSSCCEEEEEESCCCCHHHHHHHTTCEEEECCSTT--------------CCEEEEEEEESSSSSCE
T ss_pred eeeEEEEeeccccCcCCCceEEEEEcCCCCHHHHHhhcCCeEEEEECCC--------------CEEEEEEEeeeCCCCEE
Confidence 8999999999999999999999999999999999999999999999773 89999999999999999
Q ss_pred EEEeCCCCCccCCCCeEEEEEe
Q psy4327 162 RAKFHRNLPAIYMGRKVRIMLY 183 (187)
Q Consensus 162 RAKFk~NLPpqAiG~rVRVmLY 183 (187)
||+|++||||||||++|||||-
T Consensus 68 rAkF~~nLP~kA~G~~VrVml~ 89 (95)
T 1sqr_A 68 RARFEKGLPGQALGDYVEIVLE 89 (95)
T ss_dssp EEECSSCCSSSCTTCEEECC--
T ss_pred EEEeCCCCChHHcCCEEEEEEe
Confidence 9999999999999999999984
No 5
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=100.00 E-value=1e-47 Score=287.55 Aligned_cols=84 Identities=29% Similarity=0.568 Sum_probs=80.7
Q ss_pred EEEEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEeccccccCCCCCCCCceeeEEeEEEcccCCCceEE
Q psy4327 83 ARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHGSSGSVR 162 (187)
Q Consensus 83 vKgvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HGNSGvVR 162 (187)
+||+|+|||||++||||||||||||||++++||+|||||||+|||++ | ++|||||||+|||||+||
T Consensus 3 ~Kg~~~gykRg~~nQ~~~taLlkieGV~~~~~a~fylGKrvayv~~~-------g-------~~iwGKVtr~HGnsGvVr 68 (87)
T 3j21_c 3 IKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPS-------G-------KILKGKIVRVHGTKGAVR 68 (87)
T ss_dssp EEEEEEEESCCSSCCCTTCEEEEESSCCSHHHHGGGTTCEEEECCSS-------S-------CCEEEEEEEECCSSSCEE
T ss_pred eeEEEEecccccCcCCCCeEEEEEcCcCCHHHHHhhcCceEEEEeCC-------C-------CEEEEEEEeeeCCCCeEE
Confidence 79999999999999999999999999999999999999999999963 1 489999999999999999
Q ss_pred EEeCCCCCccCCCCeEEE
Q psy4327 163 AKFHRNLPAIYMGRKVRI 180 (187)
Q Consensus 163 AKFk~NLPpqAiG~rVRV 180 (187)
|+|++||||||||++|||
T Consensus 69 AkF~~nLP~~a~G~~Vri 86 (87)
T 3j21_c 69 ARFEKGLPGQALGDYVEI 86 (87)
T ss_dssp EEESSCCCSSCSCCEECC
T ss_pred EEeCCCCChHHcCCeEEe
Confidence 999999999999999997
No 6
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=88.17 E-value=0.13 Score=45.87 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCCCeeEEeecCCCChhhhhhhccceEEEEEeccccccCCCCCCCCceeeEEeEEEcccCCCceEEEEeCCCCCccCCCC
Q psy4327 97 QHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGR 176 (187)
Q Consensus 97 Q~pntALLKIEGV~tkedA~FYlGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HGNSGvVRAKFk~NLPpqAiG~ 176 (187)
++.++++++=- ..+..|.++|+|.+|...+ | -|+|.|-.+.|.||.+++.|.-+|.++ +
T Consensus 413 ~~~~~~i~~~l-f~~~~~~~~f~g~~v~~~~---------g--------~~~G~I~~~fg~~G~~~~~f~~~~~~~---d 471 (482)
T 1wb1_A 413 IDKGRTVIDGL-AQSKVAAEKLIGEEISIEG---------K--------DIVGKIKGTFGTKGLLTAEFSGNVENR---D 471 (482)
T ss_dssp CCSSCCEETTS-CSSHHHHHHSCSCCCEETT---------T--------CCCBCCCCCBTTTTBBCCCBSSCCCSS---C
T ss_pred EcCCEEEEEcC-ccchhhhHHhcCcEEEEcC---------C--------ceEEEEeccCCCCceEEEEecCCCCCC---C
Confidence 46778877622 4566789999999987721 2 256999999999999999999998764 5
Q ss_pred eEEEEEeec
Q psy4327 177 KVRIMLYPS 185 (187)
Q Consensus 177 rVRVmLYPS 185 (187)
.|.+-||-.
T Consensus 472 ~v~~~~~~~ 480 (482)
T 1wb1_A 472 KVILNRLRR 480 (482)
T ss_dssp EEEEECCCS
T ss_pred eeeeehhhc
Confidence 677667653
No 7
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=82.26 E-value=1.8 Score=34.31 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=31.5
Q ss_pred EEEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEecc
Q psy4327 84 RAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAK 130 (187)
Q Consensus 84 KgvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKaK 130 (187)
.-.+.++|. +.+..|++++||+++++|+.|.|..+ ||.+..
T Consensus 46 ~~~v~~~r~-----~~~~~lvkf~gi~dr~~Ae~L~G~~l-~v~~~~ 86 (177)
T 3h9n_A 46 SIELENWRY-----HNHEIIVKLKGVDDREAAQILANVEI-GVDLSV 86 (177)
T ss_dssp EECEEEEEE-----SSSCEEEEESSCCSHHHHHTTTTCEE-EEECCC
T ss_pred EEEEEEEEE-----eCCEEEEEEcCCCCHHHHHHhcCCEE-EEEHHH
Confidence 334556664 34668999999999999999999987 666653
No 8
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=79.57 E-value=3 Score=33.57 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=30.4
Q ss_pred EEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEec
Q psy4327 85 AIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKA 129 (187)
Q Consensus 85 gvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKa 129 (187)
-.+.++|. +.+..|++++||+++++|+.|.|..+ ||.+.
T Consensus 65 ~~v~~~r~-----~~~~~ivkf~gi~dr~~Ae~L~G~~l-~v~r~ 103 (187)
T 2f1l_A 65 AELVRGRL-----HGKVLAAKLKGLDDREEARTFTGYEI-CIPRS 103 (187)
T ss_dssp EEEEEEEE-----ETTEEEEEETTCCSHHHHHTTTTCEE-EEEGG
T ss_pred EEEEEEEE-----ECCEEEEEEeCCCCHHHHHHhCCCEE-EEEHH
Confidence 45666664 34679999999999999999999865 55554
No 9
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=79.29 E-value=1.1 Score=35.10 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=30.6
Q ss_pred EEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEec
Q psy4327 86 IFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKA 129 (187)
Q Consensus 86 vflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKa 129 (187)
.+.++|. +.+..|++++||+|+++|+.|.|..+ ||.+.
T Consensus 42 ~v~~~r~-----~~~~~ivkf~gi~~r~~Ae~L~G~~l-~v~~~ 79 (162)
T 2dyi_A 42 AIEDLYR-----VGEELVVHLAGVTDRTLAEALVGLRV-YAEVA 79 (162)
T ss_dssp EEEEEEE-----ETTEEEEEETTCCSHHHHHTTTTCEE-EEEGG
T ss_pred EEEEEEE-----ECCEEEEEEcCCCCHHHHHHhCCCEE-EEEHH
Confidence 6777764 35679999999999999999999865 55554
No 10
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=78.80 E-value=1.2 Score=35.54 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=30.0
Q ss_pred EEEEeeecccCCCCCCeeEEeecCCCChhhhhhhccceEEEEEec
Q psy4327 85 AIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKA 129 (187)
Q Consensus 85 gvflGYKRG~rnQ~pntALLKIEGV~tkedA~FYlGKRVaYVYKa 129 (187)
-.+.++|. +.+..|++++||+++++|+.|.|..+ ||.+.
T Consensus 56 ~~v~~~r~-----~~~~~ivkf~gi~dr~~Ae~L~G~~l-~v~~~ 94 (182)
T 2qgg_A 56 VDVKRWKP-----HGKGLVVSLKGVSDRTGAESLVASNI-WIAKS 94 (182)
T ss_dssp ECEEEEEE-----ETTEEEEEETTCCSHHHHHTTTTCEE-EEETT
T ss_pred EEEEEEEE-----cCCEEEEEECCCCCHHHHHHhCCCEE-EEEHH
Confidence 34566653 35679999999999999999999865 55554
No 11
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=61.82 E-value=6.8 Score=31.42 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=24.1
Q ss_pred eeEEeEEEcccCCCceEEEEeCCCCCc
Q psy4327 145 RAIWGKVTRPHGSSGSVRAKFHRNLPA 171 (187)
Q Consensus 145 RvIWGKVtR~HGNSGvVRAKFk~NLPp 171 (187)
.+..|+|.++||-.|-|+..-...-|-
T Consensus 20 ~v~VG~I~~~hGikGeVkV~~~Td~pe 46 (187)
T 2f1l_A 20 LVVIGKIVSVYGIRGEVKVYSFTDPLD 46 (187)
T ss_dssp EEEEEEEEEEETTTTEEEEEECSSSGG
T ss_pred EEEEEEEeCCEeeCEEEEEEECCCCHH
Confidence 588999999999999999988888774
No 12
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=57.96 E-value=31 Score=25.98 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=22.2
Q ss_pred EEeEEEcccCC----------CceEEEEeCCCCCccCCCCeEEE
Q psy4327 147 IWGKVTRPHGS----------SGSVRAKFHRNLPAIYMGRKVRI 180 (187)
Q Consensus 147 IWGKVtR~HGN----------SGvVRAKFk~NLPpqAiG~rVRV 180 (187)
|+|||.+.|.+ .|.|.+.+...|+... +.-|.|
T Consensus 27 ivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~~~l-~~~vEV 69 (121)
T 3kdf_A 27 FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEI-SGIVEV 69 (121)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCC-CSEEEE
T ss_pred EEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCccc-CcEEEE
Confidence 45899988843 3788999988665433 555554
No 13
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=56.30 E-value=9.3 Score=31.79 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.0
Q ss_pred ccceEEEEEeccccccCCCCCCCCceeeEEeEEEcccCCCceEEEEeCCCCCccC
Q psy4327 119 VGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIY 173 (187)
Q Consensus 119 lGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HGNSGvVRAKFk~NLPpqA 173 (187)
+||||.-|... | .|.++-.+|....+|.++||+-.
T Consensus 30 ~GkRcLvva~~-------------------G-~T~~~~k~G~~~~~F~S~LPgG~ 64 (204)
T 1xk5_A 30 VGKRALIVASR-------------------G-STSAYTKSGYCVNRFSSLLPGGN 64 (204)
T ss_dssp SSEEEEEEEET-------------------T-EEEEECTTSCEEEEECCSSSSSC
T ss_pred CCcEEEEEecC-------------------C-eEEEECCCCcEEEEEcccCCCCC
Confidence 59999987632 1 24466789999999999999864
No 14
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=51.16 E-value=45 Score=24.73 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=24.8
Q ss_pred EEeEEEcccCCC--------ceEEEEeCCCCCccCCCCeEEEE
Q psy4327 147 IWGKVTRPHGSS--------GSVRAKFHRNLPAIYMGRKVRIM 181 (187)
Q Consensus 147 IWGKVtR~HGNS--------GvVRAKFk~NLPpqAiG~rVRVm 181 (187)
|+|||...||+. |.|.+++..+++.+ +|.-|.|.
T Consensus 23 ivGkV~~~~g~~~~l~s~d~~~Vtv~l~~~~~~~-~~~~vEVi 64 (114)
T 4gop_A 23 IVGKVHKVTGNTLLMQTSDLGNVEIAMTPDSDVS-SSTFVEVT 64 (114)
T ss_dssp EEEEEEEEETTEEEEECTTSCEEEEECCSSCCGG-GCSEEEEE
T ss_pred EEEEEeeeCCCEEEEEeCCCCEEEEEeCCCCCcc-cCcEEEEE
Confidence 458888888753 78888888877764 67776664
No 15
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=41.52 E-value=41 Score=30.38 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=38.2
Q ss_pred cceEEEEEeccccccCCCCCCCCceeeEEeEEEcccCCCceEEEEeC----CCCCccCCCCeEEEEEeec
Q psy4327 120 GKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHGSSGSVRAKFH----RNLPAIYMGRKVRIMLYPS 185 (187)
Q Consensus 120 GKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HGNSGvVRAKFk----~NLPpqAiG~rVRVmLYPS 185 (187)
--+||-+||. | +.+.|+.. .|+|+|-|-|- .+--++..|.+|.|..|+-
T Consensus 31 N~yvALwyKs-------G-------k~vlGRaW---n~~G~V~csF~~~~~E~~g~~~~~GsiQiL~~~~ 83 (345)
T 2bjq_A 31 NMYVALWYKF-------G-------KPIHGRAW---NDNGNVECSFPYNKVELTGARDLGGQIQILTATE 83 (345)
T ss_dssp SCEEEEEEET-------T-------EEEEEEEE---EETTEEEEEEEETTEEECCTTTTTSEEEEEECSC
T ss_pred ceEEEEEEEc-------C-------cEEEeeee---cCCCcEEEEeecCCcccccccccCCeEEEEEeCC
Confidence 5789999975 2 57888766 88999999994 2345668999999988863
No 16
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=31.44 E-value=21 Score=24.77 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.9
Q ss_pred EEEcccCCCceEEEEeCCC
Q psy4327 150 KVTRPHGSSGSVRAKFHRN 168 (187)
Q Consensus 150 KVtR~HGNSGvVRAKFk~N 168 (187)
-+..+||..|++.+-|+..
T Consensus 22 WvL~P~GrkGVkIgLFk~P 40 (56)
T 3kxt_A 22 WALAPKGRKGVKIGLFKDP 40 (56)
T ss_dssp EEECCTTSCCEEEEEEECT
T ss_pred EEEcCCCCCceEEEEEECC
Confidence 3788999999999999965
No 17
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=29.56 E-value=41 Score=30.48 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=36.7
Q ss_pred CCCCCCeeEEe--ecCCCChhhhhhh-----ccceEEEEEeccccccCCCCCCCCceeeEEeEEEcccCCCceEEEEeCC
Q psy4327 95 RNQHPNTSLLA--IEKCNTKEDARFY-----VGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHGSSGSVRAKFHR 167 (187)
Q Consensus 95 rnQ~pntALLK--IEGV~tkedA~FY-----lGKRVaYVYKaK~~~~~pg~~k~sk~RvIWGKVtR~HGNSGvVRAKFk~ 167 (187)
+..|-|+..|- +..|-+-=+..|| +||||.-|... |. |...-.+|-...+|.+
T Consensus 100 ~k~yanqlMlsEWl~dvP~dL~~~W~~vpcPvGkRcLVVas~-------------------G~-T~aysk~G~~l~~F~S 159 (365)
T 3gjx_B 100 PKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASR-------------------GS-TSAYTKSGYCVNRFSS 159 (365)
T ss_dssp CCSSSSCSEEEEECCSCCTTHHHHEEEEEEESSEEEEEEEET-------------------TE-EEEECTTCCEEEEECC
T ss_pred cHHHHhhHHHHHhcccCCcccccCeeEEeccCCcEEEEEecC-------------------ce-EEEECCCCCEEeeeCC
Confidence 34455654442 2233332234565 59999988632 11 3345578999999999
Q ss_pred CCCccCC
Q psy4327 168 NLPAIYM 174 (187)
Q Consensus 168 NLPpqAi 174 (187)
+||+-.-
T Consensus 160 ~LPGG~~ 166 (365)
T 3gjx_B 160 LLPGGNR 166 (365)
T ss_dssp SSTTTCC
T ss_pred CCCCCCc
Confidence 9999544
Done!