RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4327
         (187 letters)



>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 87

 Score =  121 bits (306), Expect = 4e-37
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 14/101 (13%)

Query: 81  LYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKR 140
           +  + +   ++R + NQH N  ++     N++E+A   +G+  ++   +           
Sbjct: 1   MRIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSG---------- 50

Query: 141 KSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIM 181
               + + GK+ R HG+ G+VRA+F + LP   +G  V I+
Sbjct: 51  ----KILKGKIVRVHGTKGAVRARFEKGLPGQALGDYVEIV 87


>d2hiya1 d.356.1.1 (A:1-180) Hypothetical protein SP0830
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 180

 Score = 26.8 bits (59), Expect = 1.3
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 99  PNTSLLAIEKCNTKEDARFYVGKRCVFLYKAKTKELKPHSKRKSRLRAIWGKVTRPHGSS 158
               ++A  +    +D   Y GK  +F  K         S  K+       K   P    
Sbjct: 110 DVDQVIATVESLELKDEVLYFGKLGIFWGK-----FSEESYSKTAYHKYLLK--VPFYRH 162

Query: 159 GSVR 162
            ++R
Sbjct: 163 ITIR 166


>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 72

 Score = 24.6 bits (54), Expect = 3.1
 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 149 GKVTRPHGSSGSVRAKFHRNLPAIY 173
           G++    G+   V  +F   LP I 
Sbjct: 2   GRIVAVIGAV--VDVQFDEGLPPIL 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,763
Number of extensions: 27433
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 13
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)