BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4335
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31009|RS2_DROME 40S ribosomal protein S2 OS=Drosophila melanogaster GN=RpS2 PE=1
SV=2
Length = 267
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/138 (81%), Positives = 124/138 (89%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
R+GKI+SLE+IYL+SLPIKEFEIIDFF+GSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 54 REGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 113
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRL----T 123
GD+NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK +
Sbjct: 114 GDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGS 173
Query: 124 HGDQQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 174 VSVRLIPAPRGTGIVSAP 191
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2
Length = 293
Score = 219 bits (557), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+D KI+SLE+IYLFSLPIKE EIIDFF+G+SLKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 71 KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 130
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD NGH+GLGVKCSKEVATAIRGAIILAKLS+VPVRRGYWGNKIGKPHTVPCK
Sbjct: 131 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGS 190
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 191 VLVRLIPAPRGTGIVSAP 208
>sp|P27952|RS2_RAT 40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1
Length = 293
Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+D KI+SLE+IYLFSLPIKE EIIDFF+G+SLKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 71 KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 130
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD NGH+GLGVKCSKEVATAIRGAIILAKLS+VPVRRGYWGNKIGKPHTVPCK
Sbjct: 131 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGS 190
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 191 VLVRLIPAPRGTGIVSAP 208
>sp|P25444|RS2_MOUSE 40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3
Length = 293
Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+D KI+SLE+IYLFSLPIKE EIIDFF+G+SLKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 71 KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 130
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD NGH+GLGVKCSKEVATAIRGAIILAKLS+VPVRRGYWGNKIGKPHTVPCK
Sbjct: 131 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGS 190
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 191 VLVRLIPAPRGTGIVSAP 208
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2
Length = 293
Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+D KI+SLE+IYLFSLPIKE EIIDFF+G+SLKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 71 KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 130
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD NGH+GLGVKCSKEVATAIRGAIILAKLS+VPVRRGYWGNKIGKPHTVPCK
Sbjct: 131 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGS 190
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 191 VLVRLIPAPRGTGIVSAP 208
>sp|P49154|RS2_URECA 40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1
Length = 278
Score = 218 bits (556), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+D KI++LE+IYLFSLPIKEFEIIDFF+G +LKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 57 KDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAI 116
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD NGH+GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK
Sbjct: 117 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGS 176
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 177 VLVRLIPAPRGTGIVSAP 194
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2
PE=2 SV=1
Length = 202
Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+D KI+SLE+IYLFSLPIKE EIIDFF+G+SLKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 11 KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 70
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD NGH+GLGVKCSKEVATAIRGAIILAKLS+VPVRRGYWGNKIGKPHTVPCK
Sbjct: 71 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGS 130
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 131 VLVRLIPAPRGTGIVSAP 148
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1
Length = 277
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/138 (76%), Positives = 120/138 (86%), Gaps = 4/138 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+D KI+SLE+IYL+SLPIKE EIIDFF+GS+LKDEVLKIMPVQKQTRAGQRTRFKAFVAI
Sbjct: 56 KDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAI 115
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIGKPHTVPCK
Sbjct: 116 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGS 175
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 176 VLVRLIPAPRGTGIVSAP 193
>sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2
SV=1
Length = 276
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 106/113 (93%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI +EQIYL SLP+KE++IID +G SLKDEV+KIMPVQKQTRAGQRTRFKAF+ +
Sbjct: 56 KEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVV 115
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 120
GDSNGH+GLGVKCSKEVATAIRGAIILAKLSVVP+RRGYWGNKIGKPHTVPCK
Sbjct: 116 GDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCK 168
>sp|Q93VB8|RS22_ARATH 40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2
SV=1
Length = 284
Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 95/112 (84%), Positives = 103/112 (91%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
D KI LEQIYL SLP+KE++IID +G +LKDEV+KIMPVQKQTRAGQRTRFKAFV +G
Sbjct: 65 DNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 120
D NGH+GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK
Sbjct: 125 DGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
>sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2
SV=2
Length = 284
Score = 205 bits (521), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/112 (84%), Positives = 103/112 (91%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
D KI LEQIYL SLP+KE++IID +G +LKDEV+KIMPVQKQTRAGQRTRFKAFV +G
Sbjct: 65 DNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 120
D NGH+GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK
Sbjct: 125 DGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
>sp|P49688|RS23_ARATH 40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1
SV=2
Length = 285
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/111 (84%), Positives = 103/111 (92%)
Query: 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 69
G I+ +EQIYL SLP+KE++IID IG +LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 GHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD 126
Query: 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 120
NGH+GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK
Sbjct: 127 GNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 177
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=3
SV=1
Length = 272
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 110/138 (79%), Gaps = 5/138 (3%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++ KI +LE+IYL SLPIKEFEIID S+LKDEVLKI PVQKQT AGQRTRFKAFVAI
Sbjct: 68 KEKKITTLEEIYLNSLPIKEFEIIDALC-SNLKDEVLKISPVQKQTTAGQRTRFKAFVAI 126
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GD GH+GLGVKCSKEVATAIRGAI+ AKL+VVPVRRGYWGNKIG PHTVPCK
Sbjct: 127 GDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCAS 186
Query: 127 ---QQIPGGRKSKVLSSP 141
+ IP R + ++S+P
Sbjct: 187 VMVRLIPAPRGTGIVSAP 204
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps2 PE=1 SV=1
Length = 253
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 102/113 (90%), Gaps = 1/113 (0%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+ GKI+S+E+IYL+SLPIKE++I+D+F+ L DEV+K++PVQKQTRAGQRTRFKAFV I
Sbjct: 45 KAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVI 103
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 120
GDS+GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG +G PHTVP K
Sbjct: 104 GDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVK 156
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1
SV=1
Length = 265
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 100/111 (90%), Gaps = 2/111 (1%)
Query: 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 69
G ++++ +IYLFSLPIKE++IID F+ +LKDEV+KI+PVQKQTRAGQRTRFKAFV +GD
Sbjct: 62 GLVENIHEIYLFSLPIKEYQIIDKFL--NLKDEVMKIVPVQKQTRAGQRTRFKAFVVVGD 119
Query: 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 120
NGH+GLGVKC+KEVATAI GAI+ AKLSV+PVRRGYWGNK+G PHTVP K
Sbjct: 120 HNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTK 170
>sp|P25443|RS2_YEAST 40S ribosomal protein S2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS2 PE=1 SV=3
Length = 254
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/140 (57%), Positives = 105/140 (75%), Gaps = 9/140 (6%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+ GKI ++E+I+L SLP+KEF+IID + L+DEV+ I PVQKQTRAGQRTRFKA V +
Sbjct: 46 KAGKITTIEEIFLHSLPVKEFQIIDTLL-PGLQDEVMNIKPVQKQTRAGQRTRFKAVVVV 104
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTHGD- 126
GDSNGH+GLG+K +KEVA AIR II+AKLSV+P+RRGYWG +G+PH++ K T G
Sbjct: 105 GDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATK--TTGKC 162
Query: 127 -----QQIPGGRKSKVLSSP 141
+ IP R S +++SP
Sbjct: 163 GSVTVRLIPAPRGSGIVASP 182
>sp|O43992|RS2_LEIAM 40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1
Length = 265
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 89/111 (80%), Gaps = 1/111 (0%)
Query: 11 KIQSLEQIYLFSLPIKEFEIIDFFIGSS-LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 69
K+ SLE+I+LFS+PIKE +I+D I L DE++KI PVQK T AGQRTRFKAF +GD
Sbjct: 59 KVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGD 118
Query: 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 120
+GHIG+G + KEV+ AIR ++I AKL++VPVRRGYWGNKIG+PHT+P K
Sbjct: 119 CDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMK 169
>sp|A2BMD9|RS5_HYPBU 30S ribosomal protein S5 OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=rps5 PE=3 SV=1
Length = 213
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G+I+SL +I+ +LPI E EI+D+ IG LK E + + VQK T AG+ RF+ V I
Sbjct: 23 KEGRIRSLSEIFEKNLPILEPEIVDYLIGPELKSETVDVRLVQKMTDAGRINRFRVVVVI 82
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ NG +G+G ++++A AI AI AKL+++PVRR G W +PH+VP
Sbjct: 83 GNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVP 135
>sp|A3MU88|RS5_PYRCJ 30S ribosomal protein S5 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rps5 PE=3 SV=1
Length = 202
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI+++++I+ +L IKE EI+D + LK E+L + VQ+QT AG+R +F+A VA+
Sbjct: 20 KEGKIRTIDEIFANNLLIKEPEIVDILL-PGLKQELLNLNLVQRQTHAGERNQFQAVVAV 78
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ +G++G+G+ S++V AI A AKL++ PVRR G W +PH+VP
Sbjct: 79 GNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVP 131
>sp|A1RWR6|RS5_THEPD 30S ribosomal protein S5 OS=Thermofilum pendens (strain Hrk 5)
GN=rps5 PE=3 SV=1
Length = 202
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 80/114 (70%), Gaps = 3/114 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
+GKI+S+++++ ++PI+E EIID + LK EVL + VQ+QT +G+ ++++ VA+G
Sbjct: 17 EGKIKSIDEVFARNMPIREVEIIDTLL-PGLKSEVLSVGFVQRQTDSGEVSQYQVTVAVG 75
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
+ +G++G+G+ S+++ AI A AKL++VPVRR G W G+PH++P K
Sbjct: 76 NEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFK 129
>sp|A1RU37|RS5_PYRIL 30S ribosomal protein S5 OS=Pyrobaculum islandicum (strain DSM 4184
/ JCM 9189) GN=rps5 PE=3 SV=1
Length = 202
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI+++++I+ + IKE EI+D + LK E+L I VQ+QT AG+R++F+ VA+
Sbjct: 20 KEGKIRTIDEIFANNYIIKEPEIVDILL-PGLKQEILNINVVQRQTHAGERSQFQVVVAV 78
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ +G++G+G+ +K+V AI A+ AKL++ PVRR G W +PH+VP
Sbjct: 79 GNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVP 131
>sp|A4WHQ8|RS5_PYRAR 30S ribosomal protein S5 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps5 PE=3 SV=2
Length = 202
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI+++++++ + IKE EI+D + LK E+L + VQ+QT AG+R+ F+A VA+
Sbjct: 20 KEGKIRTIDEVFANNYIIKEPEIVDILV-PGLKQELLNVNIVQRQTHAGERSLFQAVVAV 78
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ +G++G+G+ +++V AI A+ AKL+++PVRR G W +PH+VP
Sbjct: 79 GNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVP 131
>sp|Q8ZXN9|RS5_PYRAE 30S ribosomal protein S5 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rps5
PE=3 SV=1
Length = 218
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI+++++I+ + IKE EI+D + LK E+L + VQ+QT AG+R +F+A VA+
Sbjct: 36 KEGKIRTIDEIFANNYIIKEPEIVDILL-PGLKQELLNVNLVQRQTHAGERNQFQAVVAV 94
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ +G++G+G+ +++V AI A AKL++VPVRR G W +PH+VP
Sbjct: 95 GNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPVRRGCGSWKCSCDEPHSVP 147
>sp|A5UL68|RS5_METS3 30S ribosomal protein S5 OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=rps5 PE=3 SV=1
Length = 213
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I +++I+ LPI E EI+D + L++EV+ + VQ+ ++G++ F+ VA+
Sbjct: 19 KEGTITDIDEIFEKGLPIMELEIVDALV-PDLEEEVMDVNLVQRMHKSGRKVNFRVIVAV 77
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
G+ NG++GLG +KEV AIR A+ AK +++ VRR G WG GK HTVP K
Sbjct: 78 GNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFK 132
>sp|Q9HIS7|RS5_THEAC 30S ribosomal protein S5 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps5 PE=3 SV=1
Length = 221
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Query: 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 69
G+I+++ + LP+KE+EI+D+ + +LKDEV+ I Q+ T +G+R + V +G+
Sbjct: 18 GQIKTMGEALRSKLPLKEYEIVDYLL-PNLKDEVIDIKRAQRMTDSGRRMTYSITVVVGN 76
Query: 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
+G++GLG+ SKE A AIR A+I AKL+++ +RR G W G+ HT+P
Sbjct: 77 GDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLP 127
>sp|Q97BV6|RS5_THEVO 30S ribosomal protein S5 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rps5
PE=3 SV=1
Length = 221
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Query: 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 69
G+I+++ + LP+KE+EI+D+ + ++KDEV+ I Q+ T +G+R + V +G+
Sbjct: 18 GQIKTISEALKTKLPLKEYEIVDYLL-PNIKDEVIDIKRAQRMTDSGRRMTYSITVVVGN 76
Query: 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
+G+IGLG+ SKE A AIR A+I AKL+++ +RR G W G+ HT+P
Sbjct: 77 EDGYIGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLP 127
>sp|A8AC00|RS5_IGNH4 30S ribosomal protein S5 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rps5 PE=3 SV=1
Length = 211
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI S+ +++ +LPI E EI+D+ + LK EVL + VQK T AG+ TR + V I
Sbjct: 21 KEGKITSIYELFEKNLPILEPEIVDYLV-PDLKHEVLDVSLVQKVTDAGRVTRLRVLVVI 79
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ +G +GLG+ +K++ AI+ A+ AKL++ PVRR G W G+PH+VP
Sbjct: 80 GNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVP 132
>sp|Q9YF95|RS5_AERPE 30S ribosomal protein S5 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps5 PE=3
SV=1
Length = 218
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI+S+++I+ +LPI E EI+D+ + L EV+ + VQK T AG+ TRF+A V +
Sbjct: 25 KEGKIKSIDEIFRRNLPILETEIVDYLL-PGLDHEVIDVSIVQKMTDAGRITRFRAVVVV 83
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ +G++GLG +++ AI AI AKL+++PVRR G W G+ H+VP
Sbjct: 84 GNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVP 136
>sp|Q9UX87|RS5_SULSO 30S ribosomal protein S5 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps5 PE=3 SV=2
Length = 214
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 78/115 (67%), Gaps = 3/115 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI S+++++ +LPI E EI+D + LK EV+ I VQKQT AG+ +R+K V +
Sbjct: 24 KEGKISSIKELFDRNLPITEPEIVDVLL-PKLKYEVVDIKVVQKQTDAGEISRYKVLVIM 82
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
G+ +G++ +G +K++ AI+ AI AK++++PVRR G W G+PH++P K
Sbjct: 83 GNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFK 137
>sp|C3NH89|RS5_SULIN 30S ribosomal protein S5 OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=rps5 PE=3 SV=1
Length = 214
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 78/115 (67%), Gaps = 3/115 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI S+++++ +LPI E EI+D + LK EV+ I VQKQT AG+ +R+K V +
Sbjct: 24 KNGKISSIKELFDRNLPITEPEIVDVLL-PKLKYEVVDIKVVQKQTDAGEISRYKVLVIM 82
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
G+ +G++ +G +K++ AI+ AI AK++++PVRR G W G+PH++P K
Sbjct: 83 GNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFK 137
>sp|Q8PV30|RS5_METMA 30S ribosomal protein S5 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps5 PE=3 SV=1
Length = 209
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
+G++ S+++ LPI+E +IID + L+DEVL I VQ+ T +G+R +F+A V +G
Sbjct: 19 EGQVASMDEAIKSGLPIREPQIIDMLL-PDLEDEVLDINMVQRMTDSGRRVKFRATVIVG 77
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
+ NG++GLG +V AIR AI AKL++ +RR G W G PHTVP
Sbjct: 78 NRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVP 129
>sp|Q8TRS7|RS5_METAC 30S ribosomal protein S5 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps5 PE=3 SV=1
Length = 209
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
+G++ S+++ LPI+E +IID + L+DEVL I VQ+ T +G+R +F+A V +G
Sbjct: 19 EGQVASMDEAIKSGLPIREPQIIDMLL-PDLEDEVLDINMVQRMTDSGRRVKFRATVIVG 77
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
+ NG++GLG +V AIR AI AKL++ +RR G W G PHTVP
Sbjct: 78 NRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVP 129
>sp|Q46GB5|RS5_METBF 30S ribosomal protein S5 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps5 PE=3 SV=1
Length = 208
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
+G++ S+E+ LPI+E +IID + L+DEVL I VQ+ T +G+R +F+A V +G
Sbjct: 19 EGQVASMEEAIKSGLPIREPQIIDMLL-PDLEDEVLDINMVQRMTDSGRRVKFRATVIVG 77
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
+ NG++GLG +V AIR AI AKL + + R G W G PHTVP
Sbjct: 78 NRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVP 129
>sp|Q2FSG3|RS5_METHJ 30S ribosomal protein S5 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps5 PE=3 SV=1
Length = 205
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 69
G+I+S+++I PIKE EI+D F+ L DEVL I VQ+ T +G+R +F+A V +G+
Sbjct: 21 GEIKSIDEILSSGKPIKEPEIVDAFL-PDLVDEVLDINMVQRMTDSGRRVKFRAVVVVGN 79
Query: 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCKRLTHGD 126
+G+IG G +V AI+ AI+ AK+++V VRR G W PH++P L GD
Sbjct: 80 RDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPM--LVTGD 136
>sp|A4YCY6|RS5_METS5 30S ribosomal protein S5 OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rps5 PE=3 SV=1
Length = 214
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI S++++Y ++ I E EIID + ++K EV+ I VQKQT AG+ +R+K V +
Sbjct: 24 KEGKITSIKELYARNMSIAEPEIIDVLL-PNMKYEVIDIGMVQKQTDAGELSRYKVLVVM 82
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ +G++ +GV SK++ AI+ AI AK+ V+PVRR G W G+ H++P
Sbjct: 83 GNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLP 135
>sp|O26131|RS5_METTH 30S ribosomal protein S5 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps5 PE=3 SV=1
Length = 216
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I S+++I+ PI E EIID + L++EV+ + VQ+ ++G++ F+ VA+
Sbjct: 21 KEGVITSIDEIFEEGHPIMELEIIDALL-PDLEEEVIDVNLVQRMHKSGRKVNFRVIVAV 79
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
G+ +G++GLG ++EV AIR A+ AK +++ VRR G WG G+ HTVP K
Sbjct: 80 GNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFK 134
>sp|O28374|RS5_ARCFU 30S ribosomal protein S5 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps5 PE=3 SV=1
Length = 198
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 75/114 (65%), Gaps = 3/114 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
DGKI+++++ +LP+KE EI+D + L+D+VL+I VQ+ T +G+RT+F+ +G
Sbjct: 17 DGKIKTMDEALASNLPLKEPEIVDILL-PDLEDDVLEISMVQRMTDSGRRTKFRVTAVVG 75
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
+ NG++G+G + +VA AI+ AI AKL++ V+R G W G H++P K
Sbjct: 76 NRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFK 129
>sp|Q0W1W8|RS5_UNCMA 30S ribosomal protein S5 OS=Uncultured methanogenic archaeon RC-I
GN=rps5 PE=3 SV=1
Length = 212
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
+GKI ++E+ + LPIKE++I+D + L DEVL I VQ+ T +G+R +F+ V +G
Sbjct: 24 EGKITTMEEAFETGLPIKEYQIVDALL-PDLVDEVLDISMVQRMTDSGRRVKFRTTVVVG 82
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
+ NG++GL +V AIR AI AKL+++ V R G W G HTVP +
Sbjct: 83 NGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQ 136
>sp|A4FWA1|RS5_METM5 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rps5 PE=3 SV=1
Length = 229
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I + I LP+ E EI+D + L+++VL + VQ+ ++G+R R++A VA+
Sbjct: 31 KEGTISDISYIMDKGLPLLEPEIVDALL-PDLEEQVLDVKLVQRMHKSGRRARYRATVAV 89
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ NG++G+G+ SKEV AIR AI AKLS++ VR G W G PH++P
Sbjct: 90 GNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIP 142
>sp|Q12ZT1|RS5_METBU 30S ribosomal protein S5 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps5 PE=3 SV=1
Length = 211
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
DG++ S+++ LPI+E +I+D + L+DEVL I VQ+ T +G+R +F+A V +G
Sbjct: 21 DGQVTSMDEAMDSGLPIRESKIVDLLL-PELEDEVLDINMVQRMTDSGRRVKFRATVIVG 79
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
+ +G +GLG +V AIR AI AK+++ ++R G W G PHTVP +
Sbjct: 80 NGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSE 133
>sp|A6UQ64|RS5_METVS 30S ribosomal protein S5 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rps5 PE=3 SV=1
Length = 225
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I + I LP+ E EI+D + L+++VL + VQ+ ++G+R R++A V +
Sbjct: 27 KEGTISDISYIMDKGLPLLEPEIVDVLL-PDLEEQVLDVKLVQRMHKSGRRARYRATVVV 85
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ NG++G+G+ SKEV AIR AI AKLS++ VR G W G PH++P
Sbjct: 86 GNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIP 138
>sp|P14036|RS5_METVA 30S ribosomal protein S5 OS=Methanococcus vannielii GN=rps5 PE=3
SV=1
Length = 225
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I + I LP+ E EI+D + L+++VL + VQ+ ++G+R R++A V +
Sbjct: 27 KEGTISDISYIMDKGLPLLEPEIVDVLL-PDLEEQVLDVKLVQRMHKSGRRARYRATVVV 85
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ NG++G+G+ SKEV AIR AI AKLS++ VR G W G PH++P
Sbjct: 86 GNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIP 138
>sp|A9A9P4|RS5_METM6 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rps5 PE=3 SV=1
Length = 229
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I + I LP+ E EI+D + L+++VL + VQ+ ++G+R R++A V +
Sbjct: 31 KEGTISDINYIMDKGLPLLEPEIVDALL-PDLEEQVLDVKLVQRMHKSGRRARYRATVVV 89
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ NG++G+G+ SKEV AIR AI AKLS++ VR G W G PH++P
Sbjct: 90 GNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIP 142
>sp|Q9HPB4|RS5_HALSA 30S ribosomal protein S5 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps5 PE=3 SV=1
Length = 212
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
+DG+++ + + LP+KE EI+D + L DEVL I VQ+ T +G+R +F+ VAI
Sbjct: 18 QDGEVEDMSEALDTGLPLKEPEIVDQLL-PGLDDEVLDINMVQRMTDSGRRVKFRCVVAI 76
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
G+ +G++G +V AI+ AI +AKL+++ V R G W G+PHTV K
Sbjct: 77 GNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALK 131
>sp|Q975K0|RS5_SULTO 30S ribosomal protein S5 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=rps5 PE=3 SV=1
Length = 214
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++GKI S+++I+ + PI E EI+D + LK EV+ I VQKQT AG+ +++K + +
Sbjct: 24 KEGKITSMKEIFEKNYPITEPEIVDVLL-PKLKYEVMDIKIVQKQTDAGEISKYKVLIVM 82
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
G+ +G++ G +K++ AI+ AI AK++++PVRR G W G+ H++P K
Sbjct: 83 GNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFK 137
>sp|Q6LXD3|RS5_METMP 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain S2 /
LL) GN=rps5 PE=3 SV=1
Length = 225
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I + I LP+ E EI+D + L+++VL + VQ+ ++G+R R++A V +
Sbjct: 27 KEGTISDISYIMDKGLPLLEPEIVDALL-PDLEEQVLDVKLVQRMHKSGRRARYRATVVV 85
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ NG++G+G+ SKEV AIR AI AKLS++ VR G W G PH++P
Sbjct: 86 GNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIP 138
>sp|A7I5Q9|RS5_METB6 30S ribosomal protein S5 OS=Methanoregula boonei (strain 6A8)
GN=rps5 PE=3 SV=1
Length = 205
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 69
G+I+S++Q+ PIKE EI+D F+ L+DEVL I +Q+ T +G+R +F+A V +G+
Sbjct: 21 GEIKSIDQVLESGRPIKEPEIVDMFL-PDLEDEVLDIAMMQRMTDSGRRVQFRAVVIVGN 79
Query: 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
NG+IG G +V AI+ AI AK+++V VRR G W H++P +
Sbjct: 80 RNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQ 132
>sp|P54045|RS5_METJA 30S ribosomal protein S5 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps5 PE=3 SV=1
Length = 217
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G+I ++ I +LPI E EI+D + L+++VL + VQ+ ++G+R RF+A V +
Sbjct: 19 KEGQITDIDYILDNNLPILEPEIVDALL-PDLEEKVLDVKLVQRMHKSGRRARFRATVVV 77
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
G+ NG++G+G +KEV AIR AI AK +++ V+R G W G PH++P K
Sbjct: 78 GNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYK 132
>sp|A6VH05|RS5_METM7 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rps5 PE=3 SV=1
Length = 229
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 67
++G I + I LP+ E EI+D + L+++VL + VQ+ ++G+R R++A V +
Sbjct: 31 KEGTISDINYIMDKGLPLLEPEIVDALL-PDLEEQVLDVKLVQRMHKSGRRARYRATVVV 89
Query: 68 GDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVP 118
G+ NG++G+G+ SKEV AIR AI AKLS++ VR G W G PH++P
Sbjct: 90 GNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRIGCGSWECGCGYPHSIP 142
>sp|P26815|RS5_HALMA 30S ribosomal protein S5 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps5 PE=3
SV=1
Length = 212
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 68
+G+I S+++ LP+KE E++D + L+DEVL I VQ+ T +G+R +F+ VA+G
Sbjct: 19 EGEIDSMQEALNSGLPLKESEVVDQLV-PDLEDEVLDINMVQRMTDSGRRVKFRCVVAVG 77
Query: 69 DSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR--GYWGNKIGKPHTVPCK 120
+ +G IG +V AI+ AI +AKL+++ V R G W G+PHTV +
Sbjct: 78 NRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGCGRPHTVALR 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,709,257
Number of Sequences: 539616
Number of extensions: 2049859
Number of successful extensions: 4182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3401
Number of HSP's gapped (non-prelim): 716
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)